locus-tag class description SPJ_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SPJ_RS00005 PF00308 Bacterial dnaA protein SPJ_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SPJ_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SPJ_RS00010 PF02767 DNA polymerase III beta subunit, central domain SPJ_RS00020 PF06071 Protein of unknown function (DUF933) SPJ_RS00020 PF01926 50S ribosome-binding GTPase SPJ_RS00025 PF01195 Peptidyl-tRNA hydrolase SPJ_RS00030 PF03461 TRCF domain SPJ_RS00030 PF00270 DEAD/DEAH box helicase SPJ_RS00030 PF17757 UvrB interaction domain SPJ_RS00030 PF02559 CarD-like/TRCF domain SPJ_RS00030 PF00271 Helicase conserved C-terminal domain SPJ_RS00035 PF01479 S4 domain SPJ_RS00055 PF11734 TilS substrate C-terminal domain SPJ_RS00055 PF01171 PP-loop family SPJ_RS00060 PF00156 Phosphoribosyl transferase domain SPJ_RS00065 PF06480 FtsH Extracellular SPJ_RS00065 PF17862 AAA+ lid domain SPJ_RS00065 PF01434 Peptidase family M41 SPJ_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SPJ_RS00115 PF13358 DDE superfamily endonuclease SPJ_RS00140 PF00709 Adenylosuccinate synthetase SPJ_RS00145 PF14437 MafB19-like deaminase SPJ_RS00150 PF14659 Phage integrase, N-terminal SAM-like domain SPJ_RS00150 PF00589 Phage integrase family SPJ_RS00155 PF14659 Phage integrase, N-terminal SAM-like domain SPJ_RS00155 PF00589 Phage integrase family SPJ_RS00195 PF01510 N-acetylmuramoyl-L-alanine amidase SPJ_RS00195 PF01473 Putative cell wall binding repeat SPJ_RS00205 PF00692 dUTPase SPJ_RS00220 PF00484 Carbonic anhydrase SPJ_RS00235 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPJ_RS00235 PF14572 Phosphoribosyl synthetase-associated domain SPJ_RS00255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SPJ_RS00255 PF01367 5'-3' exonuclease, C-terminal SAM fold SPJ_RS00255 PF00476 DNA polymerase family A SPJ_RS00260 PF13380 CoA binding domain SPJ_RS00265 PF03601 Conserved hypothetical protein 698 SPJ_RS00270 PF00155 Aminotransferase class I and II SPJ_RS00275 PF02565 Recombination protein O C terminal SPJ_RS00275 PF11967 Recombination protein O N terminal SPJ_RS00280 PF02504 Fatty acid synthesis protein SPJ_RS00285 PF00550 Phosphopantetheine attachment site SPJ_RS00330 PF01476 LysM domain SPJ_RS00330 PF00005 ABC transporter SPJ_RS00345 PF00664 ABC transporter transmembrane region SPJ_RS00345 PF00005 ABC transporter SPJ_RS00345 PF03412 Peptidase C39 family SPJ_RS00355 PF01259 SAICAR synthetase SPJ_RS00360 PF01259 SAICAR synthetase SPJ_RS00365 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SPJ_RS00365 PF00586 AIR synthase related protein, N-terminal domain SPJ_RS00365 PF02769 AIR synthase related protein, C-terminal domain SPJ_RS00370 PF13537 Glutamine amidotransferase domain SPJ_RS00370 PF00156 Phosphoribosyl transferase domain SPJ_RS00375 PF00586 AIR synthase related protein, N-terminal domain SPJ_RS00375 PF02769 AIR synthase related protein, C-terminal domain SPJ_RS00380 PF00551 Formyl transferase SPJ_RS00385 PF04892 VanZ like family SPJ_RS00390 PF02142 MGS-like domain SPJ_RS00390 PF01808 AICARFT/IMPCHase bienzyme SPJ_RS00395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SPJ_RS00395 PF02843 Phosphoribosylglycinamide synthetase, C domain SPJ_RS00395 PF02844 Phosphoribosylglycinamide synthetase, N domain SPJ_RS00400 PF00731 AIR carboxylase SPJ_RS00405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SPJ_RS00405 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SPJ_RS00405 PF02222 ATP-grasp domain SPJ_RS00415 PF10397 Adenylosuccinate lyase C-terminus SPJ_RS00415 PF00206 Lyase SPJ_RS00420 PF00746 LPXTG cell wall anchor motif SPJ_RS00420 PF04650 YSIRK type signal peptide SPJ_RS00420 PF07501 G5 domain SPJ_RS00420 PF00728 Glycosyl hydrolase family 20, catalytic domain SPJ_RS00425 PF07702 UTRA domain SPJ_RS00425 PF00392 Bacterial regulatory proteins, gntR family SPJ_RS00430 PF01301 Glycosyl hydrolases family 35 SPJ_RS00435 PF03830 PTS system sorbose subfamily IIB component SPJ_RS00440 PF03609 PTS system sorbose-specific iic component SPJ_RS00445 PF03613 PTS system mannose/fructose/sorbose family IID component SPJ_RS00455 PF01380 SIS domain SPJ_RS00460 PF01263 Aldose 1-epimerase SPJ_RS00465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPJ_RS00470 PF02583 Metal-sensitive transcriptional repressor SPJ_RS00505 PF02386 Cation transport protein SPJ_RS00510 PF02080 TrkA-C domain SPJ_RS00510 PF02254 TrkA-N domain SPJ_RS00520 PF00535 Glycosyl transferase family 2 SPJ_RS00535 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS00535 PF00072 Response regulator receiver domain SPJ_RS00540 PF00512 His Kinase A (phospho-acceptor) domain SPJ_RS00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS00545 PF01479 S4 domain SPJ_RS00545 PF00163 Ribosomal protein S4/S9 N-terminal domain SPJ_RS00560 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS00565 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS00575 PF12010 Domain of unknown function (DUF3502) SPJ_RS00580 PF12368 Rhodanase C-terminal SPJ_RS00580 PF00581 Rhodanese-like domain SPJ_RS00580 PF17773 UPF0176 acylphosphatase like domain SPJ_RS00605 PF10400 Virulence activator alpha C-term SPJ_RS00605 PF03551 Transcriptional regulator PadR-like family SPJ_RS00620 PF02719 Polysaccharide biosynthesis protein SPJ_RS00630 PF13419 Haloacid dehalogenase-like hydrolase SPJ_RS00635 PF03313 Serine dehydratase alpha chain SPJ_RS00640 PF03315 Serine dehydratase beta chain SPJ_RS00640 PF01842 ACT domain SPJ_RS00645 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPJ_RS00645 PF01476 LysM domain SPJ_RS00665 PF00005 ABC transporter SPJ_RS00665 PF02687 FtsX-like permease family SPJ_RS00665 PF12704 MacB-like periplasmic core domain SPJ_RS00670 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPJ_RS00675 PF00764 Arginosuccinate synthase SPJ_RS00680 PF00206 Lyase SPJ_RS00680 PF14698 Argininosuccinate lyase C-terminal SPJ_RS00685 PF01381 Helix-turn-helix SPJ_RS00690 PF03412 Peptidase C39 family SPJ_RS00690 PF00664 ABC transporter transmembrane region SPJ_RS00690 PF00005 ABC transporter SPJ_RS00750 PF00293 NUDIX domain SPJ_RS00755 PF01134 Glucose inhibited division protein A SPJ_RS00755 PF13932 GidA associated domain SPJ_RS00765 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPJ_RS00765 PF00753 Metallo-beta-lactamase superfamily SPJ_RS00765 PF17770 Ribonuclease J C-terminal domain SPJ_RS00770 PF07288 Protein of unknown function (DUF1447) SPJ_RS00785 PF00814 Glycoprotease family SPJ_RS00795 PF00814 Glycoprotease family SPJ_RS00800 PF13683 Integrase core domain SPJ_RS00800 PF01610 Transposase SPJ_RS00825 PF00534 Glycosyl transferases group 1 SPJ_RS00825 PF13439 Glycosyltransferase Family 4 SPJ_RS00830 PF00535 Glycosyl transferase family 2 SPJ_RS00835 PF00664 ABC transporter transmembrane region SPJ_RS00835 PF00005 ABC transporter SPJ_RS00835 PF03412 Peptidase C39 family SPJ_RS00855 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPJ_RS00855 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPJ_RS00860 PF01381 Helix-turn-helix SPJ_RS00890 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPJ_RS00895 PF03180 NLPA lipoprotein SPJ_RS00900 PF07687 Peptidase dimerisation domain SPJ_RS00900 PF01546 Peptidase family M20/M25/M40 SPJ_RS00905 PF09383 NIL domain SPJ_RS00905 PF00005 ABC transporter SPJ_RS00910 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS00925 PF06580 Histidine kinase SPJ_RS00925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS00925 PF00672 HAMP domain SPJ_RS00925 PF02743 Cache domain SPJ_RS00930 PF12833 Helix-turn-helix domain SPJ_RS00930 PF00072 Response regulator receiver domain SPJ_RS00940 PF07972 NrdI Flavodoxin like SPJ_RS00955 PF04397 LytTr DNA-binding domain SPJ_RS00960 PF08676 MutL C terminal dimerisation domain SPJ_RS00960 PF01119 DNA mismatch repair protein, C-terminal domain SPJ_RS00965 PF00885 6,7-dimethyl-8-ribityllumazine synthase SPJ_RS00970 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SPJ_RS00970 PF00925 GTP cyclohydrolase II SPJ_RS00975 PF00677 Lumazine binding domain SPJ_RS00980 PF01872 RibD C-terminal domain SPJ_RS00980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPJ_RS00985 PF01330 RuvA N terminal domain SPJ_RS00985 PF07499 RuvA, C-terminal domain SPJ_RS00990 PF13673 Acetyltransferase (GNAT) domain SPJ_RS00990 PF00958 GMP synthase C terminal domain SPJ_RS00990 PF00117 Glutamine amidotransferase class-I SPJ_RS00990 PF13302 Acetyltransferase (GNAT) domain SPJ_RS00990 PF03352 Methyladenine glycosylase SPJ_RS01015 PF17755 UvrA DNA-binding domain SPJ_RS01015 PF00005 ABC transporter SPJ_RS01015 PF17760 UvrA interaction domain SPJ_RS01020 PF01321 Creatinase/Prolidase N-terminal domain SPJ_RS01020 PF00557 Metallopeptidase family M24 SPJ_RS01025 PF03960 ArsC family SPJ_RS01035 PF06135 IreB regulatory phosphoprotein SPJ_RS01040 PF03652 Holliday junction resolvase SPJ_RS01045 PF06949 Protein of unknown function (DUF1292) SPJ_RS01050 PF02875 Mur ligase family, glutamate ligase domain SPJ_RS01050 PF08245 Mur ligase middle domain SPJ_RS01060 PF13091 PLD-like domain SPJ_RS01075 PF03477 ATP cone domain SPJ_RS01075 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPJ_RS01100 PF00338 Ribosomal protein S10p/S20e SPJ_RS01105 PF00297 Ribosomal protein L3 SPJ_RS01110 PF00573 Ribosomal protein L4/L1 family SPJ_RS01115 PF00276 Ribosomal protein L23 SPJ_RS01120 PF03947 Ribosomal Proteins L2, C-terminal domain SPJ_RS01120 PF00181 Ribosomal Proteins L2, RNA binding domain SPJ_RS01125 PF00203 Ribosomal protein S19 SPJ_RS01130 PF00237 Ribosomal protein L22p/L17e SPJ_RS01135 PF07650 KH domain SPJ_RS01135 PF00189 Ribosomal protein S3, C-terminal domain SPJ_RS01140 PF00252 Ribosomal protein L16p/L10e SPJ_RS01145 PF00831 Ribosomal L29 protein SPJ_RS01150 PF00366 Ribosomal protein S17 SPJ_RS01155 PF00238 Ribosomal protein L14p/L23e SPJ_RS01160 PF00467 KOW motif SPJ_RS01160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SPJ_RS01165 PF00673 ribosomal L5P family C-terminus SPJ_RS01165 PF00281 Ribosomal protein L5 SPJ_RS01170 PF00253 Ribosomal protein S14p/S29e SPJ_RS01175 PF00410 Ribosomal protein S8 SPJ_RS01180 PF00347 Ribosomal protein L6 SPJ_RS01185 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SPJ_RS01190 PF00333 Ribosomal protein S5, N-terminal domain SPJ_RS01190 PF03719 Ribosomal protein S5, C-terminal domain SPJ_RS01195 PF00327 Ribosomal protein L30p/L7e SPJ_RS01200 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SPJ_RS01205 PF00344 SecY translocase SPJ_RS01215 PF01176 Translation initiation factor 1A / IF-1 SPJ_RS01220 PF00444 Ribosomal protein L36 SPJ_RS01225 PF00416 Ribosomal protein S13/S18 SPJ_RS01230 PF00411 Ribosomal protein S11 SPJ_RS01235 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SPJ_RS01235 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SPJ_RS01235 PF01000 RNA polymerase Rpb3/RpoA insert domain SPJ_RS01240 PF01196 Ribosomal protein L17 SPJ_RS01250 PF05167 Uncharacterised ACR (DUF711) SPJ_RS01270 PF08402 TOBE domain SPJ_RS01270 PF00005 ABC transporter SPJ_RS01290 PF04055 Radical SAM superfamily SPJ_RS01295 PF00455 DeoR C terminal sensor domain SPJ_RS01295 PF08220 DeoR-like helix-turn-helix domain SPJ_RS01300 PF13936 Helix-turn-helix domain SPJ_RS01300 PF04198 Putative sugar-binding domain SPJ_RS01305 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPJ_RS01310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPJ_RS01315 PF02378 Phosphotransferase system, EIIC SPJ_RS01320 PF02901 Pyruvate formate lyase-like SPJ_RS01320 PF01228 Glycine radical SPJ_RS01325 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPJ_RS01330 PF00465 Iron-containing alcohol dehydrogenase SPJ_RS01335 PF00133 tRNA synthetases class I (I, L, M and V) SPJ_RS01335 PF09334 tRNA synthetases class I (M) SPJ_RS01335 PF13603 Leucyl-tRNA synthetase, Domain 2 SPJ_RS01335 PF08264 Anticodon-binding domain of tRNA SPJ_RS01355 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPJ_RS01355 PF05491 RuvB C-terminal winged helix domain SPJ_RS01355 PF17864 RuvB AAA lid domain SPJ_RS01365 PF01255 Putative undecaprenyl diphosphate synthase SPJ_RS01375 PF02163 Peptidase family M50 SPJ_RS01380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPJ_RS01380 PF04073 Aminoacyl-tRNA editing domain SPJ_RS01380 PF03129 Anticodon binding domain SPJ_RS01385 PF00232 Glycosyl hydrolase family 1 SPJ_RS01390 PF01380 SIS domain SPJ_RS01400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPJ_RS01400 PF03714 Bacterial pullanase-associated domain SPJ_RS01400 PF00128 Alpha amylase, catalytic domain SPJ_RS01405 PF00164 Ribosomal protein S12/S23 SPJ_RS01410 PF00177 Ribosomal protein S7p/S5e SPJ_RS01415 PF00679 Elongation factor G C-terminus SPJ_RS01415 PF03764 Elongation factor G, domain IV SPJ_RS01415 PF00009 Elongation factor Tu GTP binding domain SPJ_RS01415 PF14492 Elongation Factor G, domain II SPJ_RS01415 PF03144 Elongation factor Tu domain 2 SPJ_RS01420 PF11490 DNA polymerase III polC-type N-terminus II SPJ_RS01420 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPJ_RS01420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPJ_RS01420 PF14480 DNA polymerase III polC-type N-terminus I SPJ_RS01420 PF02811 PHP domain SPJ_RS01420 PF00929 Exonuclease SPJ_RS01440 PF02073 Thermophilic metalloprotease (M29) SPJ_RS01445 PF04226 Transglycosylase associated protein SPJ_RS01450 PF00849 RNA pseudouridylate synthase SPJ_RS01450 PF01479 S4 domain SPJ_RS01460 PF03051 Peptidase C1-like family SPJ_RS01465 PF03613 PTS system mannose/fructose/sorbose family IID component SPJ_RS01470 PF03609 PTS system sorbose-specific iic component SPJ_RS01475 PF03830 PTS system sorbose subfamily IIB component SPJ_RS01475 PF03610 PTS system fructose IIA component SPJ_RS01480 PF00107 Zinc-binding dehydrogenase SPJ_RS01480 PF08240 Alcohol dehydrogenase GroES-like domain SPJ_RS01490 PF00860 Permease family SPJ_RS01500 PF00809 Pterin binding enzyme SPJ_RS01505 PF02875 Mur ligase family, glutamate ligase domain SPJ_RS01505 PF08245 Mur ligase middle domain SPJ_RS01510 PF01227 GTP cyclohydrolase I SPJ_RS01515 PF02152 Dihydroneopterin aldolase SPJ_RS01515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SPJ_RS01530 PF00572 Ribosomal protein L13 SPJ_RS01535 PF00380 Ribosomal protein S9/S16 SPJ_RS01550 PF01055 Glycosyl hydrolases family 31 SPJ_RS01550 PF17137 Domain of unknown function (DUF5110) SPJ_RS01550 PF16338 Domain of unknown function (DUF4968) SPJ_RS01550 PF13802 Galactose mutarotase-like SPJ_RS01555 PF00255 Glutathione peroxidase SPJ_RS01560 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SPJ_RS01560 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SPJ_RS01560 PF02278 Polysaccharide lyase family 8, super-sandwich domain SPJ_RS01565 PF01797 Transposase IS200 like SPJ_RS01575 PF00294 pfkB family carbohydrate kinase SPJ_RS01595 PF07470 Glycosyl Hydrolase Family 88 SPJ_RS01600 PF03830 PTS system sorbose subfamily IIB component SPJ_RS01605 PF03609 PTS system sorbose-specific iic component SPJ_RS01610 PF03613 PTS system mannose/fructose/sorbose family IID component SPJ_RS01625 PF00356 Bacterial regulatory proteins, lacI family SPJ_RS01645 PF01795 MraW methylase family SPJ_RS01655 PF03793 PASTA domain SPJ_RS01655 PF00905 Penicillin binding protein transpeptidase domain SPJ_RS01655 PF03717 Penicillin-binding Protein dimerisation domain SPJ_RS01660 PF00953 Glycosyl transferase family 4 SPJ_RS01660 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SPJ_RS01665 PF17871 AAA lid domain SPJ_RS01665 PF07724 AAA domain (Cdc48 subfamily) SPJ_RS01665 PF00004 ATPase family associated with various cellular activities (AAA) SPJ_RS01665 PF10431 C-terminal, D2-small domain, of ClpB protein SPJ_RS01670 PF02664 S-Ribosylhomocysteinase (LuxS) SPJ_RS01675 PF08903 Domain of unknown function (DUF1846) SPJ_RS01680 PF00128 Alpha amylase, catalytic domain SPJ_RS01680 PF16657 Maltogenic Amylase, C-terminal domain SPJ_RS01705 PF02706 Chain length determinant protein SPJ_RS01710 PF13614 AAA domain SPJ_RS01715 PF02397 Bacterial sugar transferase SPJ_RS01720 PF04101 Glycosyltransferase family 28 C-terminal domain SPJ_RS01720 PF03033 Glycosyltransferase family 28 N-terminal domain SPJ_RS01735 PF00535 Glycosyl transferase family 2 SPJ_RS01740 PF01501 Glycosyl transferase family 8 SPJ_RS01740 PF00535 Glycosyl transferase family 2 SPJ_RS01760 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase SPJ_RS01775 PF13683 Integrase core domain SPJ_RS01775 PF01610 Transposase SPJ_RS01785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPJ_RS01790 PF00754 F5/8 type C domain SPJ_RS01790 PF04650 YSIRK type signal peptide SPJ_RS01790 PF12905 Endo-alpha-N-acetylgalactosaminidase SPJ_RS01790 PF17451 Glycosyl hydrolase 101 beta sandwich domain SPJ_RS01790 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal SPJ_RS01790 PF17974 Galactose-binding domain-like SPJ_RS01790 PF18080 Galactose mutarotase-like fold domain SPJ_RS01795 PF00912 Transglycosylase SPJ_RS01795 PF00905 Penicillin binding protein transpeptidase domain SPJ_RS01800 PF03838 Recombination protein U SPJ_RS01805 PF06908 YspA SLOG family SPJ_RS01810 PF05103 DivIVA protein SPJ_RS01820 PF01170 Putative RNA methylase family UPF0020 SPJ_RS01820 PF02926 THUMP domain SPJ_RS01825 PF18708 MapZ extracellular C-terminal domain 2 SPJ_RS01825 PF18041 MapZ extracellular domain 1 SPJ_RS01830 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SPJ_RS01830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SPJ_RS01835 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS01835 PF00072 Response regulator receiver domain SPJ_RS01860 PF10509 Galactokinase galactose-binding signature SPJ_RS01860 PF08544 GHMP kinases C terminal SPJ_RS01860 PF00288 GHMP kinases N terminal domain SPJ_RS01870 PF00288 GHMP kinases N terminal domain SPJ_RS01870 PF08544 GHMP kinases C terminal SPJ_RS01875 PF01070 FMN-dependent dehydrogenase SPJ_RS01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS01885 PF07730 Histidine kinase SPJ_RS01890 PF00072 Response regulator receiver domain SPJ_RS01890 PF00196 Bacterial regulatory proteins, luxR family SPJ_RS01925 PF13333 Integrase core domain SPJ_RS01925 PF00665 Integrase core domain SPJ_RS01945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPJ_RS01945 PF02378 Phosphotransferase system, EIIC SPJ_RS01950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPJ_RS01950 PF05043 Mga helix-turn-helix domain SPJ_RS01950 PF08279 HTH domain SPJ_RS01955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPJ_RS01960 PF08125 Mannitol dehydrogenase C-terminal domain SPJ_RS01960 PF01232 Mannitol dehydrogenase Rossmann domain SPJ_RS01975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SPJ_RS01975 PF05697 Bacterial trigger factor protein (TF) SPJ_RS01975 PF05698 Bacterial trigger factor protein (TF) C-terminus SPJ_RS01980 PF13538 UvrD-like helicase C-terminal domain SPJ_RS01980 PF14490 Helix-hairpin-helix containing domain SPJ_RS01980 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SPJ_RS01985 PF10502 Signal peptidase, peptidase S26 SPJ_RS01990 PF01351 Ribonuclease HII SPJ_RS01990 PF11858 Domain of unknown function (DUF3378) SPJ_RS02005 PF01713 Smr domain SPJ_RS02005 PF00488 MutS domain V SPJ_RS02010 PF01235 Sodium:alanine symporter family SPJ_RS02025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPJ_RS02025 PF02403 Seryl-tRNA synthetase N-terminal domain SPJ_RS02035 PF13840 ACT domain SPJ_RS02035 PF00696 Amino acid kinase family SPJ_RS02040 PF00378 Enoyl-CoA hydratase/isomerase SPJ_RS02045 PF01047 MarR family SPJ_RS02050 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SPJ_RS02050 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SPJ_RS02055 PF00550 Phosphopantetheine attachment site SPJ_RS02060 PF03060 Nitronate monooxygenase SPJ_RS02065 PF00698 Acyl transferase domain SPJ_RS02075 PF02801 Beta-ketoacyl synthase, C-terminal domain SPJ_RS02075 PF00109 Beta-ketoacyl synthase, N-terminal domain SPJ_RS02080 PF00364 Biotin-requiring enzyme SPJ_RS02085 PF07977 FabA-like domain SPJ_RS02090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPJ_RS02090 PF02785 Biotin carboxylase C-terminal domain SPJ_RS02090 PF00289 Biotin carboxylase, N-terminal domain SPJ_RS02095 PF01039 Carboxyl transferase domain SPJ_RS02100 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SPJ_RS02110 PF01029 NusB family SPJ_RS02115 PF03780 Asp23 family, cell envelope-related function SPJ_RS02120 PF01132 Elongation factor P (EF-P) OB domain SPJ_RS02120 PF09285 Elongation factor P, C-terminal SPJ_RS02120 PF08207 Elongation factor P (EF-P) KOW-like domain SPJ_RS02125 PF02934 GatB/GatE catalytic domain SPJ_RS02125 PF02637 GatB domain SPJ_RS02130 PF01425 Amidase SPJ_RS02135 PF02686 Glu-tRNAGln amidotransferase C subunit SPJ_RS02140 PF16658 Class II release factor RF3, C-terminal domain SPJ_RS02140 PF00009 Elongation factor Tu GTP binding domain SPJ_RS02140 PF03144 Elongation factor Tu domain 2 SPJ_RS02145 PF01501 Glycosyl transferase family 8 SPJ_RS02150 PF00830 Ribosomal L28 family SPJ_RS02155 PF03780 Asp23 family, cell envelope-related function SPJ_RS02160 PF13684 Dihydroxyacetone kinase family SPJ_RS02160 PF02734 DAK2 domain SPJ_RS02165 PF00205 Thiamine pyrophosphate enzyme, central domain SPJ_RS02165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SPJ_RS02165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SPJ_RS02170 PF01842 ACT domain SPJ_RS02170 PF10369 Small subunit of acetolactate synthase SPJ_RS02175 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SPJ_RS02175 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SPJ_RS02190 PF00585 C-terminal regulatory domain of Threonine dehydratase SPJ_RS02190 PF00291 Pyridoxal-phosphate dependent enzyme SPJ_RS02200 PF00005 ABC transporter SPJ_RS02205 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS02225 PF02673 Bacitracin resistance protein BacA SPJ_RS02230 PF11798 IMS family HHH motif SPJ_RS02230 PF00817 impB/mucB/samB family SPJ_RS02230 PF11799 impB/mucB/samB family C-terminal domain SPJ_RS02235 PF02901 Pyruvate formate lyase-like SPJ_RS02235 PF01228 Glycine radical SPJ_RS02275 PF02386 Cation transport protein SPJ_RS02280 PF02254 TrkA-N domain SPJ_RS02280 PF02080 TrkA-C domain SPJ_RS02290 PF07155 ECF-type riboflavin transporter, S component SPJ_RS02300 PF12558 ATP-binding cassette cobalt transporter SPJ_RS02300 PF00005 ABC transporter SPJ_RS02310 PF00588 SpoU rRNA Methylase family SPJ_RS02315 PF12822 ECF transporter, substrate-specific component SPJ_RS02320 PF01569 PAP2 superfamily SPJ_RS02330 PF00583 Acetyltransferase (GNAT) family SPJ_RS02335 PF05066 HB1, ASXL, restriction endonuclease HTH domain SPJ_RS02345 PF06418 CTP synthase N-terminus SPJ_RS02345 PF00117 Glutamine amidotransferase class-I SPJ_RS02360 PF00162 Phosphoglycerate kinase SPJ_RS02365 PF06081 Aromatic acid exporter family member 1 SPJ_RS02370 PF13411 MerR HTH family regulatory protein SPJ_RS02375 PF03951 Glutamine synthetase, beta-Grasp domain SPJ_RS02375 PF00120 Glutamine synthetase, catalytic domain SPJ_RS02385 PF01420 Type I restriction modification DNA specificity domain SPJ_RS02395 PF00589 Phage integrase family SPJ_RS02395 PF02899 Phage integrase, N-terminal SAM-like domain SPJ_RS02400 PF01420 Type I restriction modification DNA specificity domain SPJ_RS02405 PF12161 HsdM N-terminal domain SPJ_RS02405 PF02384 N-6 DNA Methylase SPJ_RS02410 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) SPJ_RS02410 PF04851 Type III restriction enzyme, res subunit SPJ_RS02410 PF08463 EcoEI R protein C-terminal SPJ_RS02410 PF00271 Helicase conserved C-terminal domain SPJ_RS02425 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SPJ_RS02425 PF01628 HrcA protein C terminal domain SPJ_RS02430 PF01025 GrpE SPJ_RS02435 PF00012 Hsp70 protein SPJ_RS02445 PF01556 DnaJ C terminal domain SPJ_RS02445 PF00684 DnaJ central domain SPJ_RS02445 PF00226 DnaJ domain SPJ_RS02460 PF01230 HIT domain SPJ_RS02465 PF00005 ABC transporter SPJ_RS02490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS02490 PF17203 Single cache domain 3 SPJ_RS02490 PF00989 PAS fold SPJ_RS02490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPJ_RS02505 PF00005 ABC transporter SPJ_RS02505 PF00664 ABC transporter transmembrane region SPJ_RS02505 PF03412 Peptidase C39 family SPJ_RS02510 PF00664 ABC transporter transmembrane region SPJ_RS02510 PF00005 ABC transporter SPJ_RS02510 PF03412 Peptidase C39 family SPJ_RS02565 PF02517 CPBP intramembrane metalloprotease SPJ_RS02575 PF02390 Putative methyltransferase SPJ_RS02580 PF17384 RimP C-terminal SH3 domain SPJ_RS02580 PF02576 RimP N-terminal domain SPJ_RS02585 PF00575 S1 RNA binding domain SPJ_RS02585 PF08529 NusA N-terminal domain SPJ_RS02585 PF13184 NusA-like KH domain SPJ_RS02590 PF04296 Protein of unknown function (DUF448) SPJ_RS02595 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SPJ_RS02600 PF04760 Translation initiation factor IF-2, N-terminal region SPJ_RS02600 PF11987 Translation-initiation factor 2 SPJ_RS02600 PF00009 Elongation factor Tu GTP binding domain SPJ_RS02605 PF02033 Ribosome-binding factor A SPJ_RS02650 PF13302 Acetyltransferase (GNAT) domain SPJ_RS02660 PF08264 Anticodon-binding domain of tRNA SPJ_RS02660 PF00133 tRNA synthetases class I (I, L, M and V) SPJ_RS02660 PF10458 Valyl tRNA synthetase tRNA binding arm SPJ_RS02670 PF02661 Fic/DOC family SPJ_RS02670 PF17841 BID domain of Bartonella effector protein (Bep) SPJ_RS02685 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SPJ_RS02685 PF01409 tRNA synthetases class II core domain (F) SPJ_RS02690 PF00583 Acetyltransferase (GNAT) family SPJ_RS02695 PF03484 tRNA synthetase B5 domain SPJ_RS02695 PF03483 B3/4 domain SPJ_RS02695 PF03147 Ferredoxin-fold anticodon binding domain SPJ_RS02695 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SPJ_RS02695 PF01588 Putative tRNA binding domain SPJ_RS02710 PF01381 Helix-turn-helix SPJ_RS02715 PF01717 Cobalamin-independent synthase, Catalytic domain SPJ_RS02715 PF08267 Cobalamin-independent synthase, N-terminal domain SPJ_RS02720 PF02219 Methylenetetrahydrofolate reductase SPJ_RS02725 PF03725 3' exoribonuclease family, domain 2 SPJ_RS02725 PF01138 3' exoribonuclease family, domain 1 SPJ_RS02725 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SPJ_RS02725 PF00013 KH domain SPJ_RS02725 PF00575 S1 RNA binding domain SPJ_RS02730 PF00132 Bacterial transferase hexapeptide (six repeats) SPJ_RS02730 PF06426 Serine acetyltransferase, N-terminal SPJ_RS02740 PF01406 tRNA synthetases class I (C) catalytic domain SPJ_RS02740 PF09190 DALR domain SPJ_RS02745 PF00636 Ribonuclease III domain SPJ_RS02750 PF13556 PucR C-terminal helix-turn-helix domain SPJ_RS02755 PF13683 Integrase core domain SPJ_RS02755 PF01610 Transposase SPJ_RS02770 PF02687 FtsX-like permease family SPJ_RS02770 PF12704 MacB-like periplasmic core domain SPJ_RS02775 PF00005 ABC transporter SPJ_RS02780 PF12704 MacB-like periplasmic core domain SPJ_RS02780 PF02687 FtsX-like permease family SPJ_RS02785 PF00072 Response regulator receiver domain SPJ_RS02785 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS02790 PF00512 His Kinase A (phospho-acceptor) domain SPJ_RS02790 PF00672 HAMP domain SPJ_RS02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS02795 PF01116 Fructose-bisphosphate aldolase class-II SPJ_RS02800 PF00970 Oxidoreductase FAD-binding domain SPJ_RS02800 PF00111 2Fe-2S iron-sulfur cluster binding domain SPJ_RS02800 PF00175 Oxidoreductase NAD-binding domain SPJ_RS02805 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS02810 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS02815 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPJ_RS02820 PF00005 ABC transporter SPJ_RS02825 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SPJ_RS02825 PF01368 DHH family SPJ_RS02825 PF02272 DHHA1 domain SPJ_RS02825 PF17768 RecJ OB domain SPJ_RS02830 PF00753 Metallo-beta-lactamase superfamily SPJ_RS02830 PF17770 Ribonuclease J C-terminal domain SPJ_RS02830 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPJ_RS02835 PF00756 Putative esterase SPJ_RS02855 PF08459 UvrC Helix-hairpin-helix N-terminal SPJ_RS02855 PF02151 UvrB/uvrC motif SPJ_RS02855 PF01541 GIY-YIG catalytic domain SPJ_RS02865 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPJ_RS02870 PF00881 Nitroreductase family SPJ_RS02875 PF01546 Peptidase family M20/M25/M40 SPJ_RS02880 PF03167 Uracil DNA glycosylase superfamily SPJ_RS02890 PF05525 Branched-chain amino acid transport protein SPJ_RS02895 PF05343 M42 glutamyl aminopeptidase SPJ_RS02910 PF00298 Ribosomal protein L11, RNA binding domain SPJ_RS02910 PF03946 Ribosomal protein L11, N-terminal domain SPJ_RS02915 PF00687 Ribosomal protein L1p/L10e family SPJ_RS02920 PF01610 Transposase SPJ_RS02920 PF13683 Integrase core domain SPJ_RS02945 PF00005 ABC transporter SPJ_RS02975 PF00082 Subtilase family SPJ_RS02990 PF03611 PTS system sugar-specific permease component SPJ_RS03000 PF00703 Glycosyl hydrolases family 2 SPJ_RS03000 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SPJ_RS03000 PF02837 Glycosyl hydrolases family 2, sugar binding domain SPJ_RS03000 PF16355 Domain of unknown function (DUF4982) SPJ_RS03000 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SPJ_RS03020 PF04055 Radical SAM superfamily SPJ_RS03020 PF16199 Radical_SAM C-terminal domain SPJ_RS03025 PF16199 Radical_SAM C-terminal domain SPJ_RS03025 PF04055 Radical SAM superfamily SPJ_RS03030 PF06962 Putative rRNA methylase SPJ_RS03040 PF00999 Sodium/hydrogen exchanger family SPJ_RS03050 PF02683 Cytochrome C biogenesis protein transmembrane region SPJ_RS03055 PF08534 Redoxin SPJ_RS03060 PF01641 SelR domain SPJ_RS03060 PF01625 Peptide methionine sulfoxide reductase SPJ_RS03065 PF00072 Response regulator receiver domain SPJ_RS03065 PF12833 Helix-turn-helix domain SPJ_RS03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS03070 PF06580 Histidine kinase SPJ_RS03070 PF02743 Cache domain SPJ_RS03070 PF00672 HAMP domain SPJ_RS03075 PF04260 Protein of unknown function (DUF436) SPJ_RS03085 PF00425 chorismate binding enzyme SPJ_RS03085 PF04715 Anthranilate synthase component I, N terminal region SPJ_RS03095 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain SPJ_RS03095 PF17890 Peptidoglycan hydrolase LytB WW-like domain SPJ_RS03095 PF01473 Putative cell wall binding repeat SPJ_RS03095 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPJ_RS03100 PF00480 ROK family SPJ_RS03105 PF00303 Thymidylate synthase SPJ_RS03120 PF01926 50S ribosome-binding GTPase SPJ_RS03120 PF13167 GTP-binding GTPase N-terminal SPJ_RS03120 PF16360 GTP-binding GTPase Middle Region SPJ_RS03125 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPJ_RS03125 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPJ_RS03130 PF12706 Beta-lactamase superfamily domain SPJ_RS03130 PF00753 Metallo-beta-lactamase superfamily SPJ_RS03135 PF00106 short chain dehydrogenase SPJ_RS03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPJ_RS03140 PF03466 LysR substrate binding domain SPJ_RS03150 PF00581 Rhodanese-like domain SPJ_RS03160 PF01479 S4 domain SPJ_RS03160 PF00849 RNA pseudouridylate synthase SPJ_RS03165 PF03144 Elongation factor Tu domain 2 SPJ_RS03165 PF00009 Elongation factor Tu GTP binding domain SPJ_RS03165 PF14492 Elongation Factor G, domain II SPJ_RS03165 PF00679 Elongation factor G C-terminus SPJ_RS03185 PF00005 ABC transporter SPJ_RS03190 PF02875 Mur ligase family, glutamate ligase domain SPJ_RS03190 PF08245 Mur ligase middle domain SPJ_RS03195 PF03033 Glycosyltransferase family 28 N-terminal domain SPJ_RS03195 PF04101 Glycosyltransferase family 28 C-terminal domain SPJ_RS03200 PF08478 POTRA domain, FtsQ-type SPJ_RS03205 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPJ_RS03210 PF00156 Phosphoribosyl transferase domain SPJ_RS03235 PF00005 ABC transporter SPJ_RS03240 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPJ_RS03250 PF00005 ABC transporter SPJ_RS03255 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS03260 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS03265 PF01070 FMN-dependent dehydrogenase SPJ_RS03270 PF00152 tRNA synthetases class II (D, K and N) SPJ_RS03270 PF01336 OB-fold nucleic acid binding domain SPJ_RS03275 PF01070 FMN-dependent dehydrogenase SPJ_RS03285 PF02110 Hydroxyethylthiazole kinase family SPJ_RS03290 PF02581 Thiamine monophosphate synthase SPJ_RS03300 PF00005 ABC transporter SPJ_RS03310 PF03070 TENA/THI-4/PQQC family SPJ_RS03320 PF02110 Hydroxyethylthiazole kinase family SPJ_RS03325 PF02581 Thiamine monophosphate synthase SPJ_RS03330 PF08543 Phosphomethylpyrimidine kinase SPJ_RS03335 PF03965 Penicillinase repressor SPJ_RS03345 PF00403 Heavy-metal-associated domain SPJ_RS03350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SPJ_RS03350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SPJ_RS03350 PF00205 Thiamine pyrophosphate enzyme, central domain SPJ_RS03375 PF00232 Glycosyl hydrolase family 1 SPJ_RS03380 PF01238 Phosphomannose isomerase type I SPJ_RS03385 PF00209 Sodium:neurotransmitter symporter family SPJ_RS03395 PF00293 NUDIX domain SPJ_RS03395 PF13344 Haloacid dehalogenase-like hydrolase SPJ_RS03405 PF02645 Uncharacterised protein, DegV family COG1307 SPJ_RS03415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPJ_RS03425 PF00574 Clp protease SPJ_RS03430 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SPJ_RS03435 PF13458 Periplasmic binding protein SPJ_RS03440 PF02653 Branched-chain amino acid transport system / permease component SPJ_RS03445 PF11862 Domain of unknown function (DUF3382) SPJ_RS03445 PF02653 Branched-chain amino acid transport system / permease component SPJ_RS03450 PF00005 ABC transporter SPJ_RS03450 PF12399 Branched-chain amino acid ATP-binding cassette transporter SPJ_RS03455 PF00005 ABC transporter SPJ_RS03460 PF00571 CBS domain SPJ_RS03460 PF01743 Poly A polymerase head domain SPJ_RS03465 PF03462 PCRF domain SPJ_RS03465 PF00472 RF-1 domain SPJ_RS03470 PF00005 ABC transporter SPJ_RS03475 PF18075 FtsX extracellular domain SPJ_RS03475 PF02687 FtsX-like permease family SPJ_RS03480 PF00367 phosphotransferase system, EIIB SPJ_RS03480 PF02378 Phosphotransferase system, EIIC SPJ_RS03480 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPJ_RS03485 PF03372 Endonuclease/Exonuclease/phosphatase family SPJ_RS03490 PF00270 DEAD/DEAH box helicase SPJ_RS03490 PF00271 Helicase conserved C-terminal domain SPJ_RS03495 PF02772 S-adenosylmethionine synthetase, central domain SPJ_RS03495 PF02773 S-adenosylmethionine synthetase, C-terminal domain SPJ_RS03495 PF00438 S-adenosylmethionine synthetase, N-terminal domain SPJ_RS03500 PF01180 Dihydroorotate dehydrogenase SPJ_RS03510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SPJ_RS03510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SPJ_RS03515 PF06265 Protein of unknown function (DUF1027) SPJ_RS03520 PF04055 Radical SAM superfamily SPJ_RS03530 PF00005 ABC transporter SPJ_RS03530 PF12848 ABC transporter SPJ_RS03535 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPJ_RS03550 PF00886 Ribosomal protein S16 SPJ_RS03565 PF05239 PRC-barrel domain SPJ_RS03565 PF01782 RimM N-terminal domain SPJ_RS03570 PF01746 tRNA (Guanine-1)-methyltransferase SPJ_RS03575 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPJ_RS03575 PF03477 ATP cone domain SPJ_RS03585 PF02229 Transcriptional Coactivator p15 (PC4) SPJ_RS03595 PF02632 BioY family SPJ_RS03610 PF12704 MacB-like periplasmic core domain SPJ_RS03610 PF00005 ABC transporter SPJ_RS03610 PF02687 FtsX-like permease family SPJ_RS03620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPJ_RS03620 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPJ_RS03625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SPJ_RS03630 PF00005 ABC transporter SPJ_RS03635 PF02687 FtsX-like permease family SPJ_RS03635 PF12704 MacB-like periplasmic core domain SPJ_RS03640 PF01588 Putative tRNA binding domain SPJ_RS03640 PF09334 tRNA synthetases class I (M) SPJ_RS03660 PF00248 Aldo/keto reductase family SPJ_RS03695 PF11838 ERAP1-like C-terminal domain SPJ_RS03695 PF01433 Peptidase family M1 domain SPJ_RS03700 PF13683 Integrase core domain SPJ_RS03700 PF01610 Transposase SPJ_RS03705 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS03705 PF00072 Response regulator receiver domain SPJ_RS03710 PF00512 His Kinase A (phospho-acceptor) domain SPJ_RS03710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS03725 PF00929 Exonuclease SPJ_RS03725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPJ_RS03725 PF14579 Helix-hairpin-helix motif SPJ_RS03725 PF02811 PHP domain SPJ_RS03725 PF11490 DNA polymerase III polC-type N-terminus II SPJ_RS03725 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPJ_RS03730 PF01098 Cell cycle protein SPJ_RS03735 PF01965 DJ-1/PfpI family SPJ_RS03745 PF00986 DNA gyrase B subunit, carboxyl terminus SPJ_RS03745 PF01751 Toprim domain SPJ_RS03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS03745 PF00204 DNA gyrase B SPJ_RS03750 PF06160 Septation ring formation regulator, EzrA SPJ_RS03765 PF00293 NUDIX domain SPJ_RS03780 PF00004 ATPase family associated with various cellular activities (AAA) SPJ_RS03780 PF10431 C-terminal, D2-small domain, of ClpB protein SPJ_RS03780 PF17871 AAA lid domain SPJ_RS03780 PF07724 AAA domain (Cdc48 subfamily) SPJ_RS03785 PF08796 Protein of unknown function (DUF1797) SPJ_RS03790 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS03795 PF00005 ABC transporter SPJ_RS03800 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SPJ_RS03800 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SPJ_RS03810 PF01256 Carbohydrate kinase SPJ_RS03815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SPJ_RS03820 PF01676 Metalloenzyme superfamily SPJ_RS03830 PF01048 Phosphorylase superfamily SPJ_RS03845 PF01289 Thiol-activated cytolysin SPJ_RS03845 PF17440 Thiol-activated cytolysin beta sandwich domain SPJ_RS03850 PF01048 Phosphorylase superfamily SPJ_RS03860 PF01649 Ribosomal protein S20 SPJ_RS03865 PF00485 Phosphoribulokinase / Uridine kinase family SPJ_RS03875 PF05175 Methyltransferase small domain SPJ_RS03880 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SPJ_RS03880 PF00591 Glycosyl transferase family, a/b domain SPJ_RS03880 PF02885 Glycosyl transferase family, helical bundle domain SPJ_RS03885 PF01791 DeoC/LacD family aldolase SPJ_RS03890 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPJ_RS03895 PF02608 ABC transporter substrate-binding protein PnrA-like SPJ_RS03900 PF00005 ABC transporter SPJ_RS03905 PF02653 Branched-chain amino acid transport system / permease component SPJ_RS03910 PF02653 Branched-chain amino acid transport system / permease component SPJ_RS03925 PF13333 Integrase core domain SPJ_RS03925 PF00665 Integrase core domain SPJ_RS03925 PF13276 HTH-like domain SPJ_RS03930 PF02660 Glycerol-3-phosphate acyltransferase SPJ_RS03935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS03935 PF00986 DNA gyrase B subunit, carboxyl terminus SPJ_RS03935 PF00204 DNA gyrase B SPJ_RS03935 PF01751 Toprim domain SPJ_RS03945 PF03989 DNA gyrase C-terminal domain, beta-propeller SPJ_RS03945 PF00521 DNA gyrase/topoisomerase IV, subunit A SPJ_RS03950 PF01063 Amino-transferase class IV SPJ_RS03955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPJ_RS03970 PF01470 Pyroglutamyl peptidase SPJ_RS03990 PF00575 S1 RNA binding domain SPJ_RS03995 PF13683 Integrase core domain SPJ_RS03995 PF01610 Transposase SPJ_RS04010 PF13185 GAF domain SPJ_RS04015 PF12169 DNA polymerase III subunits gamma and tau domain III SPJ_RS04025 PF00005 ABC transporter SPJ_RS04030 PF01458 Uncharacterized protein family (UPF0051) SPJ_RS04035 PF00266 Aminotransferase class-V SPJ_RS04040 PF01592 NifU-like N terminal domain SPJ_RS04045 PF01458 Uncharacterized protein family (UPF0051) SPJ_RS04055 PF07943 Penicillin-binding protein 5, C-terminal domain SPJ_RS04055 PF00768 D-alanyl-D-alanine carboxypeptidase SPJ_RS04060 PF01594 AI-2E family transporter SPJ_RS04070 PF08220 DeoR-like helix-turn-helix domain SPJ_RS04070 PF00455 DeoR C terminal sensor domain SPJ_RS04075 PF00294 pfkB family carbohydrate kinase SPJ_RS04080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPJ_RS04080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPJ_RS04085 PF09397 Ftsk gamma domain SPJ_RS04085 PF01580 FtsK/SpoIIIE family SPJ_RS04085 PF17854 FtsK alpha domain SPJ_RS04095 PF00266 Aminotransferase class-V SPJ_RS04100 PF02926 THUMP domain SPJ_RS04100 PF02568 Thiamine biosynthesis protein (ThiI) SPJ_RS04120 PF02384 N-6 DNA Methylase SPJ_RS04145 PF02899 Phage integrase, N-terminal SAM-like domain SPJ_RS04145 PF00589 Phage integrase family SPJ_RS04155 PF08463 EcoEI R protein C-terminal SPJ_RS04155 PF00271 Helicase conserved C-terminal domain SPJ_RS04155 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SPJ_RS04155 PF04851 Type III restriction enzyme, res subunit SPJ_RS04160 PF01316 Arginine repressor, DNA binding domain SPJ_RS04160 PF02863 Arginine repressor, C-terminal domain SPJ_RS04165 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPJ_RS04165 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPJ_RS04165 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPJ_RS04170 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPJ_RS04170 PF01336 OB-fold nucleic acid binding domain SPJ_RS04170 PF02811 PHP domain SPJ_RS04170 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPJ_RS04170 PF14579 Helix-hairpin-helix motif SPJ_RS04175 PF00365 Phosphofructokinase SPJ_RS04180 PF02887 Pyruvate kinase, alpha/beta domain SPJ_RS04180 PF00224 Pyruvate kinase, barrel domain SPJ_RS04215 PF09323 Domain of unknown function (DUF1980) SPJ_RS04220 PF03773 Predicted permease SPJ_RS04235 PF16921 Tex protein YqgF-like domain SPJ_RS04235 PF00575 S1 RNA binding domain SPJ_RS04235 PF09371 Tex-like protein N-terminal domain SPJ_RS04235 PF17674 HHH domain SPJ_RS04240 PF17283 SprT-like zinc ribbon domain SPJ_RS04240 PF10263 SprT-like family SPJ_RS04260 PF00005 ABC transporter SPJ_RS04265 PF02687 FtsX-like permease family SPJ_RS04275 PF13936 Helix-turn-helix domain SPJ_RS04280 PF01276 Orn/Lys/Arg decarboxylase, major domain SPJ_RS04280 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SPJ_RS04295 PF17284 Spermidine synthase tetramerisation domain SPJ_RS04300 PF16653 Saccharopine dehydrogenase C-terminal domain SPJ_RS04300 PF03435 Saccharopine dehydrogenase NADP binding domain SPJ_RS04305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SPJ_RS04310 PF04371 Porphyromonas-type peptidyl-arginine deiminase SPJ_RS04315 PF00795 Carbon-nitrogen hydrolase SPJ_RS04340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPJ_RS04340 PF03466 LysR substrate binding domain SPJ_RS04345 PF01252 Signal peptidase (SPase) II SPJ_RS04350 PF01479 S4 domain SPJ_RS04350 PF00849 RNA pseudouridylate synthase SPJ_RS04360 PF00696 Amino acid kinase family SPJ_RS04360 PF01472 PUA domain SPJ_RS04365 PF00171 Aldehyde dehydrogenase family SPJ_RS04370 PF03807 NADP oxidoreductase coenzyme F420-dependent SPJ_RS04370 PF14748 Pyrroline-5-carboxylate reductase dimerisation SPJ_RS04375 PF02223 Thymidylate kinase SPJ_RS04380 PF09115 DNA polymerase III, delta subunit, C terminal SPJ_RS04385 PF06156 Initiation control protein YabA SPJ_RS04390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SPJ_RS04420 PF01134 Glucose inhibited division protein A SPJ_RS04425 PF00696 Amino acid kinase family SPJ_RS04430 PF01765 Ribosome recycling factor SPJ_RS04435 PF17783 CvfB-like winged helix domain SPJ_RS04435 PF13509 S1 domain SPJ_RS04440 PF06855 YozE SAM-like fold SPJ_RS04445 PF02562 PhoH-like protein SPJ_RS04460 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SPJ_RS04460 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SPJ_RS04465 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SPJ_RS04465 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SPJ_RS04470 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SPJ_RS04470 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SPJ_RS04475 PF13302 Acetyltransferase (GNAT) domain SPJ_RS04480 PF10531 SLBB domain SPJ_RS04485 PF13567 Domain of unknown function (DUF4131) SPJ_RS04485 PF00753 Metallo-beta-lactamase superfamily SPJ_RS04485 PF03772 Competence protein SPJ_RS04495 PF00005 ABC transporter SPJ_RS04505 PF05198 Translation initiation factor IF-3, N-terminal domain SPJ_RS04505 PF00707 Translation initiation factor IF-3, C-terminal domain SPJ_RS04510 PF01632 Ribosomal protein L35 SPJ_RS04515 PF00453 Ribosomal protein L20 SPJ_RS04520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPJ_RS04525 PF00175 Oxidoreductase NAD-binding domain SPJ_RS04525 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SPJ_RS04525 PF00970 Oxidoreductase FAD-binding domain SPJ_RS04530 PF01180 Dihydroorotate dehydrogenase SPJ_RS04535 PF01473 Putative cell wall binding repeat SPJ_RS04535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPJ_RS04535 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain SPJ_RS04535 PF17890 Peptidoglycan hydrolase LytB WW-like domain SPJ_RS04540 PF05670 NFACT protein RNA binding domain SPJ_RS04545 PF02130 Uncharacterized protein family UPF0054 SPJ_RS04550 PF01219 Prokaryotic diacylglycerol kinase SPJ_RS04555 PF01926 50S ribosome-binding GTPase SPJ_RS04555 PF07650 KH domain SPJ_RS04560 PF06827 Zinc finger found in FPG and IleRS SPJ_RS04560 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SPJ_RS04560 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SPJ_RS04565 PF01121 Dephospho-CoA kinase SPJ_RS04570 PF07690 Major Facilitator Superfamily SPJ_RS04570 PF00083 Sugar (and other) transporter SPJ_RS04575 PF00471 Ribosomal protein L33 SPJ_RS04585 PF00575 S1 RNA binding domain SPJ_RS04585 PF08206 Ribonuclease B OB domain SPJ_RS04585 PF00773 RNB domain SPJ_RS04585 PF17876 Cold shock domain SPJ_RS04590 PF01668 SmpB protein SPJ_RS04595 PF03848 Tellurite resistance protein TehB SPJ_RS04595 PF09313 Domain of unknown function (DUF1971) SPJ_RS04605 PF01432 Peptidase family M3 SPJ_RS04605 PF08439 Oligopeptidase F SPJ_RS04610 PF01596 O-methyltransferase SPJ_RS04615 PF13145 PPIC-type PPIASE domain SPJ_RS04620 PF00665 Integrase core domain SPJ_RS04620 PF13333 Integrase core domain SPJ_RS04635 PF04073 Aminoacyl-tRNA editing domain SPJ_RS04650 PF00132 Bacterial transferase hexapeptide (six repeats) SPJ_RS04650 PF14602 Hexapeptide repeat of succinyl-transferase SPJ_RS04650 PF00483 Nucleotidyl transferase SPJ_RS04655 PF00293 NUDIX domain SPJ_RS04665 PF01048 Phosphorylase superfamily SPJ_RS04670 PF08279 HTH domain SPJ_RS04670 PF04394 Protein of unknown function, DUF536 SPJ_RS04675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPJ_RS04675 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPJ_RS04675 PF00929 Exonuclease SPJ_RS04675 PF11490 DNA polymerase III polC-type N-terminus II SPJ_RS04675 PF02811 PHP domain SPJ_RS04675 PF14579 Helix-hairpin-helix motif SPJ_RS04680 PF03009 Glycerophosphoryl diester phosphodiesterase family SPJ_RS04700 PF02683 Cytochrome C biogenesis protein transmembrane region SPJ_RS04705 PF00578 AhpC/TSA family SPJ_RS04710 PF13520 Amino acid permease SPJ_RS04715 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SPJ_RS04715 PF01297 Zinc-uptake complex component A periplasmic SPJ_RS04745 PF07687 Peptidase dimerisation domain SPJ_RS04745 PF01546 Peptidase family M20/M25/M40 SPJ_RS04750 PF00762 Ferrochelatase SPJ_RS04755 PF01741 Large-conductance mechanosensitive channel, MscL SPJ_RS04765 PF06177 QueT transporter SPJ_RS04775 PF02774 Semialdehyde dehydrogenase, dimerisation domain SPJ_RS04775 PF01118 Semialdehyde dehydrogenase, NAD binding domain SPJ_RS04780 PF00701 Dihydrodipicolinate synthetase family SPJ_RS04785 PF10396 GTP-binding protein TrmE N-terminus SPJ_RS04785 PF12631 MnmE helical domain SPJ_RS04785 PF01926 50S ribosome-binding GTPase SPJ_RS04790 PF01361 Tautomerase enzyme SPJ_RS04795 PF00265 Thymidine kinase SPJ_RS04800 PF00472 RF-1 domain SPJ_RS04800 PF03462 PCRF domain SPJ_RS04805 PF05175 Methyltransferase small domain SPJ_RS04820 PF00464 Serine hydroxymethyltransferase SPJ_RS04840 PF05958 tRNA (Uracil-5-)-methyltransferase SPJ_RS04860 PF01032 FecCD transport family SPJ_RS04865 PF01032 FecCD transport family SPJ_RS04870 PF00005 ABC transporter SPJ_RS04890 PF00239 Resolvase, N terminal domain SPJ_RS04890 PF02796 Helix-turn-helix domain of resolvase SPJ_RS04920 PF00781 Diacylglycerol kinase catalytic domain SPJ_RS04925 PF00128 Alpha amylase, catalytic domain SPJ_RS04925 PF02903 Alpha amylase, N-terminal ig-like domain SPJ_RS04940 PF01381 Helix-turn-helix SPJ_RS04945 PF06414 Zeta toxin SPJ_RS04970 PF03432 Relaxase/Mobilisation nuclease domain SPJ_RS05005 PF00005 ABC transporter SPJ_RS05025 PF01098 Cell cycle protein SPJ_RS05030 PF00311 Phosphoenolpyruvate carboxylase SPJ_RS05045 PF00005 ABC transporter SPJ_RS05050 PF08275 DNA primase catalytic core, N-terminal domain SPJ_RS05050 PF10410 DnaB-helicase binding domain of primase SPJ_RS05050 PF01807 CHC2 zinc finger SPJ_RS05055 PF00140 Sigma-70 factor, region 1.2 SPJ_RS05055 PF04545 Sigma-70, region 4 SPJ_RS05055 PF04542 Sigma-70 region 2 SPJ_RS05055 PF04539 Sigma-70 region 3 SPJ_RS05055 PF03979 Sigma-70 factor, region 1.1 SPJ_RS05060 PF01883 Iron-sulfur cluster assembly protein SPJ_RS05065 PF00534 Glycosyl transferases group 1 SPJ_RS05065 PF13439 Glycosyltransferase Family 4 SPJ_RS05070 PF00534 Glycosyl transferases group 1 SPJ_RS05070 PF13439 Glycosyltransferase Family 4 SPJ_RS05085 PF09269 Domain of unknown function (DUF1967) SPJ_RS05085 PF01018 GTP1/OBG SPJ_RS05085 PF01926 50S ribosome-binding GTPase SPJ_RS05095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPJ_RS05105 PF07085 DRTGG domain SPJ_RS05105 PF00392 Bacterial regulatory proteins, gntR family SPJ_RS05105 PF00571 CBS domain SPJ_RS05105 PF03061 Thioesterase superfamily SPJ_RS05110 PF00557 Metallopeptidase family M24 SPJ_RS05130 PF13361 UvrD-like helicase C-terminal domain SPJ_RS05130 PF00580 UvrD/REP helicase N-terminal domain SPJ_RS05135 PF04002 RadC-like JAB domain SPJ_RS05140 PF07722 Peptidase C26 SPJ_RS05145 PF02629 CoA binding domain SPJ_RS05145 PF06971 Putative DNA-binding protein N-terminus SPJ_RS05160 PF00266 Aminotransferase class-V SPJ_RS05165 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPJ_RS05165 PF14572 Phosphoribosyl synthetase-associated domain SPJ_RS05175 PF04607 Region found in RelA / SpoT proteins SPJ_RS05180 PF01513 ATP-NAD kinase SPJ_RS05185 PF00849 RNA pseudouridylate synthase SPJ_RS05190 PF01515 Phosphate acetyl/butaryl transferase SPJ_RS05210 PF02575 YbaB/EbfC DNA-binding family SPJ_RS05220 PF00829 Ribosomal prokaryotic L21 protein SPJ_RS05230 PF01016 Ribosomal L27 protein SPJ_RS05240 PF01687 Riboflavin kinase SPJ_RS05240 PF06574 FAD synthetase SPJ_RS05245 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPJ_RS05245 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPJ_RS05250 PF02645 Uncharacterised protein, DegV family COG1307 SPJ_RS05255 PF00216 Bacterial DNA-binding protein SPJ_RS05260 PF12848 ABC transporter SPJ_RS05260 PF16326 ABC transporter C-terminal domain SPJ_RS05260 PF00005 ABC transporter SPJ_RS05270 PF00083 Sugar (and other) transporter SPJ_RS05275 PF12826 Helix-hairpin-helix motif SPJ_RS05275 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SPJ_RS05275 PF00533 BRCA1 C Terminus (BRCT) domain SPJ_RS05275 PF01653 NAD-dependent DNA ligase adenylation domain SPJ_RS05275 PF03120 NAD-dependent DNA ligase OB-fold domain SPJ_RS05280 PF17999 Pullulanase N1-terminal domain SPJ_RS05280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPJ_RS05280 PF00128 Alpha amylase, catalytic domain SPJ_RS05290 PF00171 Aldehyde dehydrogenase family SPJ_RS05295 PF02806 Alpha amylase, C-terminal all-beta domain SPJ_RS05295 PF00128 Alpha amylase, catalytic domain SPJ_RS05295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPJ_RS05300 PF00483 Nucleotidyl transferase SPJ_RS05305 PF00483 Nucleotidyl transferase SPJ_RS05310 PF00534 Glycosyl transferases group 1 SPJ_RS05310 PF08323 Starch synthase catalytic domain SPJ_RS05325 PF02595 Glycerate kinase family SPJ_RS05335 PF00113 Enolase, C-terminal TIM barrel domain SPJ_RS05335 PF03952 Enolase, N-terminal domain SPJ_RS05340 PF14659 Phage integrase, N-terminal SAM-like domain SPJ_RS05340 PF00589 Phage integrase family SPJ_RS05350 PF12705 PD-(D/E)XK nuclease superfamily SPJ_RS05355 PF12705 PD-(D/E)XK nuclease superfamily SPJ_RS05355 PF13361 UvrD-like helicase C-terminal domain SPJ_RS05355 PF00580 UvrD/REP helicase N-terminal domain SPJ_RS05365 PF07501 G5 domain SPJ_RS05365 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SPJ_RS05365 PF04650 YSIRK type signal peptide SPJ_RS05365 PF00746 LPXTG cell wall anchor motif SPJ_RS05365 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SPJ_RS05365 PF07581 The GLUG motif SPJ_RS05370 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SPJ_RS05370 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SPJ_RS05370 PF00746 LPXTG cell wall anchor motif SPJ_RS05370 PF07501 G5 domain SPJ_RS05375 PF01926 50S ribosome-binding GTPase SPJ_RS05380 PF01351 Ribonuclease HII SPJ_RS05385 PF00654 Voltage gated chloride channel SPJ_RS05390 PF00589 Phage integrase family SPJ_RS05395 PF10437 Bacterial lipoate protein ligase C-terminus SPJ_RS05395 PF03099 Biotin/lipoate A/B protein ligase family SPJ_RS05400 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPJ_RS05400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPJ_RS05405 PF02817 e3 binding domain SPJ_RS05405 PF00364 Biotin-requiring enzyme SPJ_RS05405 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SPJ_RS05410 PF02779 Transketolase, pyrimidine binding domain SPJ_RS05410 PF02780 Transketolase, C-terminal domain SPJ_RS05415 PF00676 Dehydrogenase E1 component SPJ_RS05420 PF01554 MatE SPJ_RS05430 PF01979 Amidohydrolase family SPJ_RS05435 PF00293 NUDIX domain SPJ_RS05440 PF03167 Uracil DNA glycosylase superfamily SPJ_RS05450 PF13419 Haloacid dehalogenase-like hydrolase SPJ_RS05465 PF02896 PEP-utilising enzyme, TIM barrel domain SPJ_RS05465 PF00391 PEP-utilising enzyme, mobile domain SPJ_RS05465 PF05524 PEP-utilising enzyme, N-terminal SPJ_RS05470 PF00381 PTS HPr component phosphorylation site SPJ_RS05475 PF00462 Glutaredoxin SPJ_RS05480 PF08343 Ribonucleotide reductase N-terminal SPJ_RS05480 PF00317 Ribonucleotide reductase, all-alpha domain SPJ_RS05480 PF02867 Ribonucleotide reductase, barrel domain SPJ_RS05485 PF00268 Ribonucleotide reductase, small chain SPJ_RS05490 PF00455 DeoR C terminal sensor domain SPJ_RS05490 PF08220 DeoR-like helix-turn-helix domain SPJ_RS05495 PF00232 Glycosyl hydrolase family 1 SPJ_RS05500 PF02378 Phosphotransferase system, EIIC SPJ_RS05500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPJ_RS05505 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPJ_RS05510 PF00874 PRD domain SPJ_RS05510 PF03123 CAT RNA binding domain SPJ_RS05515 PF01791 DeoC/LacD family aldolase SPJ_RS05520 PF00294 pfkB family carbohydrate kinase SPJ_RS05525 PF02502 Ribose/Galactose Isomerase SPJ_RS05530 PF02502 Ribose/Galactose Isomerase SPJ_RS05535 PF01263 Aldose 1-epimerase SPJ_RS05565 PF03144 Elongation factor Tu domain 2 SPJ_RS05565 PF06421 GTP-binding protein LepA C-terminus SPJ_RS05565 PF00009 Elongation factor Tu GTP binding domain SPJ_RS05565 PF00679 Elongation factor G C-terminus SPJ_RS05570 PF00149 Calcineurin-like phosphoesterase SPJ_RS05575 PF13476 AAA domain SPJ_RS05580 PF02863 Arginine repressor, C-terminal domain SPJ_RS05580 PF01316 Arginine repressor, DNA binding domain SPJ_RS05585 PF01728 FtsJ-like methyltransferase SPJ_RS05585 PF01479 S4 domain SPJ_RS05590 PF00348 Polyprenyl synthetase SPJ_RS05595 PF02609 Exonuclease VII small subunit SPJ_RS05600 PF02601 Exonuclease VII, large subunit SPJ_RS05600 PF13742 OB-fold nucleic acid binding domain SPJ_RS05605 PF00485 Phosphoribulokinase / Uridine kinase family SPJ_RS05620 PF16198 tRNA pseudouridylate synthase B C-terminal domain SPJ_RS05620 PF01509 TruB family pseudouridylate synthase (N terminal domain) SPJ_RS05640 PF04203 Sortase domain SPJ_RS05645 PF00521 DNA gyrase/topoisomerase IV, subunit A SPJ_RS05645 PF03989 DNA gyrase C-terminal domain, beta-propeller SPJ_RS05650 PF00056 lactate/malate dehydrogenase, NAD binding domain SPJ_RS05650 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SPJ_RS05655 PF07885 Ion channel SPJ_RS05670 PF00753 Metallo-beta-lactamase superfamily SPJ_RS05675 PF00672 HAMP domain SPJ_RS05675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS05675 PF00512 His Kinase A (phospho-acceptor) domain SPJ_RS05675 PF13426 PAS domain SPJ_RS05680 PF00072 Response regulator receiver domain SPJ_RS05680 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS05685 PF14815 NUDIX domain SPJ_RS05685 PF00730 HhH-GPD superfamily base excision DNA repair protein SPJ_RS05690 PF01268 Formate--tetrahydrofolate ligase SPJ_RS05700 PF02441 Flavoprotein SPJ_RS05705 PF12822 ECF transporter, substrate-specific component SPJ_RS05715 PF02829 3H domain SPJ_RS05715 PF08279 HTH domain SPJ_RS05735 PF00271 Helicase conserved C-terminal domain SPJ_RS05735 PF17757 UvrB interaction domain SPJ_RS05735 PF12344 Ultra-violet resistance protein B SPJ_RS05735 PF02151 UvrB/uvrC motif SPJ_RS05735 PF04851 Type III restriction enzyme, res subunit SPJ_RS05745 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS05750 PF00005 ABC transporter SPJ_RS05755 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SPJ_RS05755 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SPJ_RS05760 PF02881 SRP54-type protein, helical bundle domain SPJ_RS05760 PF00448 SRP54-type protein, GTPase domain SPJ_RS05775 PF06470 SMC proteins Flexible Hinge Domain SPJ_RS05775 PF02463 RecF/RecN/SMC N terminal domain SPJ_RS05780 PF14622 Ribonuclease-III-like SPJ_RS05780 PF00035 Double-stranded RNA binding motif SPJ_RS05790 PF00478 IMP dehydrogenase / GMP reductase domain SPJ_RS05800 PF12102 Domain of unknown function (DUF3578) SPJ_RS05800 PF07728 AAA domain (dynein-related subfamily) SPJ_RS05815 PF00694 Aconitase C-terminal domain SPJ_RS05825 PF00180 Isocitrate/isopropylmalate dehydrogenase SPJ_RS05830 PF08502 LeuA allosteric (dimerisation) domain SPJ_RS05830 PF00682 HMGL-like SPJ_RS05835 PF08502 LeuA allosteric (dimerisation) domain SPJ_RS05835 PF00682 HMGL-like SPJ_RS05845 PF03932 CutC family SPJ_RS05850 PF04304 Protein of unknown function (DUF454) SPJ_RS05855 PF01131 DNA topoisomerase SPJ_RS05855 PF01396 Topoisomerase DNA binding C4 zinc finger SPJ_RS05855 PF01751 Toprim domain SPJ_RS05865 PF02481 DNA recombination-mediator protein A SPJ_RS05865 PF18255 DNA processing protein A sterile alpha motif domain SPJ_RS05870 PF12804 MobA-like NTP transferase domain SPJ_RS05885 PF08240 Alcohol dehydrogenase GroES-like domain SPJ_RS05890 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SPJ_RS05900 PF04991 LicD family SPJ_RS05905 PF04991 LicD family SPJ_RS05910 PF02142 MGS-like domain SPJ_RS05910 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SPJ_RS05910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPJ_RS05915 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SPJ_RS05915 PF00117 Glutamine amidotransferase class-I SPJ_RS05920 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPJ_RS05920 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPJ_RS05925 PF00156 Phosphoribosyl transferase domain SPJ_RS05930 PF00730 HhH-GPD superfamily base excision DNA repair protein SPJ_RS05930 PF10576 Iron-sulfur binding domain of endonuclease III SPJ_RS05930 PF00633 Helix-hairpin-helix motif SPJ_RS05950 PF00005 ABC transporter SPJ_RS05950 PF16326 ABC transporter C-terminal domain SPJ_RS05950 PF12848 ABC transporter SPJ_RS05955 PF01435 Peptidase family M48 SPJ_RS05960 PF04011 LemA family SPJ_RS05965 PF02527 rRNA small subunit methyltransferase G SPJ_RS05970 PF00860 Permease family SPJ_RS05975 PF00448 SRP54-type protein, GTPase domain SPJ_RS05975 PF02881 SRP54-type protein, helical bundle domain SPJ_RS05975 PF02978 Signal peptide binding domain SPJ_RS05980 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SPJ_RS05990 PF01966 HD domain SPJ_RS06010 PF01245 Ribosomal protein L19 SPJ_RS06015 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SPJ_RS06020 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SPJ_RS06025 PF01842 ACT domain SPJ_RS06025 PF00800 Prephenate dehydratase SPJ_RS06025 PF01817 Chorismate mutase type II SPJ_RS06030 PF00258 Flavodoxin SPJ_RS06035 PF02272 DHHA1 domain SPJ_RS06035 PF01368 DHH family SPJ_RS06040 PF01197 Ribosomal protein L31 SPJ_RS06055 PF13358 DDE superfamily endonuclease SPJ_RS06065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SPJ_RS06065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SPJ_RS06075 PF03412 Peptidase C39 family SPJ_RS06075 PF00005 ABC transporter SPJ_RS06075 PF00664 ABC transporter transmembrane region SPJ_RS06120 PF01813 ATP synthase subunit D SPJ_RS06125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPJ_RS06125 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPJ_RS06130 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPJ_RS06130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPJ_RS06130 PF16886 ATPsynthase alpha/beta subunit N-term extension SPJ_RS06135 PF01990 ATP synthase (F/14-kDa) subunit SPJ_RS06150 PF00137 ATP synthase subunit C SPJ_RS06155 PF01496 V-type ATPase 116kDa subunit family SPJ_RS06165 PF00480 ROK family SPJ_RS06170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPJ_RS06170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPJ_RS06175 PF02012 BNR/Asp-box repeat SPJ_RS06175 PF13088 BNR repeat-like domain SPJ_RS06175 PF02973 Sialidase, N-terminal domain SPJ_RS06185 PF00474 Sodium:solute symporter family SPJ_RS06190 PF00701 Dihydrodipicolinate synthetase family SPJ_RS06195 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPJ_RS06200 PF01380 SIS domain SPJ_RS06200 PF01418 Helix-turn-helix domain, rpiR family SPJ_RS06225 PF16320 Ribosomal protein L7/L12 dimerisation domain SPJ_RS06225 PF00542 Ribosomal protein L7/L12 C-terminal domain SPJ_RS06230 PF00466 Ribosomal protein L10 SPJ_RS06235 PF01979 Amidohydrolase family SPJ_RS06240 PF00005 ABC transporter SPJ_RS06240 PF00664 ABC transporter transmembrane region SPJ_RS06245 PF00664 ABC transporter transmembrane region SPJ_RS06245 PF00005 ABC transporter SPJ_RS06250 PF01641 SelR domain SPJ_RS06250 PF01625 Peptide methionine sulfoxide reductase SPJ_RS06260 PF08544 GHMP kinases C terminal SPJ_RS06260 PF00288 GHMP kinases N terminal domain SPJ_RS06265 PF00742 Homoserine dehydrogenase SPJ_RS06265 PF03447 Homoserine dehydrogenase, NAD binding domain SPJ_RS06270 PF05389 Negative regulator of genetic competence (MecA) SPJ_RS06285 PF00535 Glycosyl transferase family 2 SPJ_RS06290 PF13439 Glycosyltransferase Family 4 SPJ_RS06290 PF00534 Glycosyl transferases group 1 SPJ_RS06295 PF04991 LicD family SPJ_RS06300 PF03816 Cell envelope-related transcriptional attenuator domain SPJ_RS06305 PF00800 Prephenate dehydratase SPJ_RS06310 PF01202 Shikimate kinase SPJ_RS06315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPJ_RS06320 PF06133 Control of competence regulator ComK, YlbF/YmcA SPJ_RS06325 PF02153 Prephenate dehydrogenase SPJ_RS06330 PF01264 Chorismate synthase SPJ_RS06335 PF01761 3-dehydroquinate synthase SPJ_RS06340 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPJ_RS06340 PF08501 Shikimate dehydrogenase substrate binding domain SPJ_RS06345 PF01487 Type I 3-dehydroquinase SPJ_RS06350 PF10672 S-adenosylmethionine-dependent methyltransferase SPJ_RS06350 PF17785 PUA-like domain SPJ_RS06360 PF00005 ABC transporter SPJ_RS06365 PF00128 Alpha amylase, catalytic domain SPJ_RS06365 PF09154 Domain of unknown function (DUF1939) SPJ_RS06370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPJ_RS06370 PF02272 DHHA1 domain SPJ_RS06370 PF01411 tRNA synthetases class II (A) SPJ_RS06385 PF13416 Bacterial extracellular solute-binding protein SPJ_RS06390 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS06400 PF00005 ABC transporter SPJ_RS06400 PF08402 TOBE domain SPJ_RS06405 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SPJ_RS06405 PF01565 FAD binding domain SPJ_RS06415 PF03306 Alpha-acetolactate decarboxylase SPJ_RS06420 PF00392 Bacterial regulatory proteins, gntR family SPJ_RS06420 PF00155 Aminotransferase class I and II SPJ_RS06430 PF01895 PhoU domain SPJ_RS06435 PF00005 ABC transporter SPJ_RS06440 PF00005 ABC transporter SPJ_RS06445 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS06450 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS06455 PF12849 PBP superfamily domain SPJ_RS06460 PF01189 16S rRNA methyltransferase RsmB/F SPJ_RS06460 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SPJ_RS06460 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF SPJ_RS06465 PF00459 Inositol monophosphatase family SPJ_RS06470 PF05256 Uncharacterised protein family (UPF0223) SPJ_RS06475 PF03960 ArsC family SPJ_RS06485 PF13344 Haloacid dehalogenase-like hydrolase SPJ_RS06495 PF06969 HemN C-terminal domain SPJ_RS06495 PF04055 Radical SAM superfamily SPJ_RS06510 PF01790 Prolipoprotein diacylglyceryl transferase SPJ_RS06515 PF02603 HPr Serine kinase N terminus SPJ_RS06515 PF07475 HPr Serine kinase C-terminal domain SPJ_RS06520 PF01165 Ribosomal protein S21 SPJ_RS06525 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SPJ_RS06530 PF02547 Queuosine biosynthesis protein SPJ_RS06545 PF13302 Acetyltransferase (GNAT) domain SPJ_RS06550 PF02540 NAD synthase SPJ_RS06555 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SPJ_RS06555 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SPJ_RS06555 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SPJ_RS06565 PF01381 Helix-turn-helix SPJ_RS06580 PF01136 Peptidase family U32 SPJ_RS06580 PF16325 Peptidase family U32 C-terminal domain SPJ_RS06590 PF01136 Peptidase family U32 SPJ_RS06590 PF16325 Peptidase family U32 C-terminal domain SPJ_RS06605 PF18755 Restriction Enzyme Adenine Methylase Associated SPJ_RS06605 PF01555 DNA methylase SPJ_RS06615 PF00664 ABC transporter transmembrane region SPJ_RS06615 PF00005 ABC transporter SPJ_RS06620 PF00664 ABC transporter transmembrane region SPJ_RS06620 PF00005 ABC transporter SPJ_RS06635 PF00005 ABC transporter SPJ_RS06670 PF00117 Glutamine amidotransferase class-I SPJ_RS06670 PF00958 GMP synthase C terminal domain SPJ_RS06670 PF02540 NAD synthase SPJ_RS06675 PF07702 UTRA domain SPJ_RS06675 PF00392 Bacterial regulatory proteins, gntR family SPJ_RS06680 PF00892 EamA-like transporter family SPJ_RS06685 PF00144 Beta-lactamase SPJ_RS06710 PF09587 Bacterial capsule synthesis protein PGA_cap SPJ_RS06720 PF01327 Polypeptide deformylase SPJ_RS06725 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPJ_RS06725 PF00588 SpoU rRNA Methylase family SPJ_RS06730 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPJ_RS06740 PF00005 ABC transporter SPJ_RS06745 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS06750 PF03960 ArsC family SPJ_RS06755 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SPJ_RS06755 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SPJ_RS06770 PF03006 Haemolysin-III related SPJ_RS06775 PF01174 SNO glutamine amidotransferase family SPJ_RS06780 PF01680 SOR/SNZ family SPJ_RS06785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPJ_RS06785 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPJ_RS06790 PF02424 ApbE family SPJ_RS06795 PF00890 FAD binding domain SPJ_RS06795 PF04205 FMN-binding domain SPJ_RS06795 PF03358 NADPH-dependent FMN reductase SPJ_RS06800 PF03358 NADPH-dependent FMN reductase SPJ_RS06800 PF04205 FMN-binding domain SPJ_RS06800 PF00890 FAD binding domain SPJ_RS06805 PF05979 Bacterial protein of unknown function (DUF896) SPJ_RS06810 PF02092 Glycyl-tRNA synthetase beta subunit SPJ_RS06815 PF02091 Glycyl-tRNA synthetase alpha subunit SPJ_RS06825 PF00248 Aldo/keto reductase family SPJ_RS06830 PF01522 Polysaccharide deacetylase SPJ_RS06830 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SPJ_RS06840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPJ_RS06840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPJ_RS06845 PF00270 DEAD/DEAH box helicase SPJ_RS06845 PF00271 Helicase conserved C-terminal domain SPJ_RS06855 PF13358 DDE superfamily endonuclease SPJ_RS06875 PF01610 Transposase SPJ_RS06875 PF13683 Integrase core domain SPJ_RS06880 PF03144 Elongation factor Tu domain 2 SPJ_RS06880 PF03143 Elongation factor Tu C-terminal domain SPJ_RS06880 PF00009 Elongation factor Tu GTP binding domain SPJ_RS06890 PF00230 Major intrinsic protein SPJ_RS06930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPJ_RS06930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPJ_RS06930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPJ_RS06930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPJ_RS06940 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPJ_RS06945 PF00005 ABC transporter SPJ_RS06950 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS06960 PF01594 AI-2E family transporter SPJ_RS06965 PF10282 Lactonase, 7-bladed beta-propeller SPJ_RS06975 PF01610 Transposase SPJ_RS06975 PF13683 Integrase core domain SPJ_RS06980 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SPJ_RS06980 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SPJ_RS06985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPJ_RS06985 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPJ_RS06990 PF00231 ATP synthase SPJ_RS06995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPJ_RS06995 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPJ_RS06995 PF00306 ATP synthase alpha/beta chain, C terminal domain SPJ_RS07000 PF00213 ATP synthase delta (OSCP) subunit SPJ_RS07005 PF00430 ATP synthase B/B' CF(0) SPJ_RS07010 PF00119 ATP synthase A chain SPJ_RS07015 PF00137 ATP synthase subunit C SPJ_RS07020 PF13936 Helix-turn-helix domain SPJ_RS07025 PF00583 Acetyltransferase (GNAT) family SPJ_RS07035 PF03449 Transcription elongation factor, N-terminal SPJ_RS07035 PF01272 Transcription elongation factor, GreA/GreB, C-term SPJ_RS07055 PF02875 Mur ligase family, glutamate ligase domain SPJ_RS07055 PF01225 Mur ligase family, catalytic domain SPJ_RS07055 PF08245 Mur ligase middle domain SPJ_RS07070 PF00155 Aminotransferase class I and II SPJ_RS07075 PF01053 Cys/Met metabolism PLP-dependent enzyme SPJ_RS07080 PF00005 ABC transporter SPJ_RS07080 PF00664 ABC transporter transmembrane region SPJ_RS07085 PF00005 ABC transporter SPJ_RS07085 PF00664 ABC transporter transmembrane region SPJ_RS07095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPJ_RS07100 PF14667 Polysaccharide biosynthesis C-terminal domain SPJ_RS07100 PF01943 Polysaccharide biosynthesis protein SPJ_RS07105 PF02875 Mur ligase family, glutamate ligase domain SPJ_RS07105 PF08245 Mur ligase middle domain SPJ_RS07110 PF05532 CsbD-like SPJ_RS07125 PF01368 DHH family SPJ_RS07125 PF02833 DHHA2 domain SPJ_RS07130 PF01541 GIY-YIG catalytic domain SPJ_RS07135 PF05175 Methyltransferase small domain SPJ_RS07140 PF00575 S1 RNA binding domain SPJ_RS07145 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPJ_RS07150 PF01084 Ribosomal protein S18 SPJ_RS07155 PF00436 Single-strand binding protein family SPJ_RS07160 PF01250 Ribosomal protein S6 SPJ_RS07165 PF01336 OB-fold nucleic acid binding domain SPJ_RS07165 PF00152 tRNA synthetases class II (D, K and N) SPJ_RS07175 PF00155 Aminotransferase class I and II SPJ_RS07190 PF03358 NADPH-dependent FMN reductase SPJ_RS07195 PF04650 YSIRK type signal peptide SPJ_RS07195 PF00746 LPXTG cell wall anchor motif SPJ_RS07195 PF06458 MucBP domain SPJ_RS07200 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SPJ_RS07200 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPJ_RS07200 PF05043 Mga helix-turn-helix domain SPJ_RS07205 PF03883 Peroxide stress protein YaaA SPJ_RS07220 PF01327 Polypeptide deformylase SPJ_RS07225 PF02798 Glutathione S-transferase, N-terminal domain SPJ_RS07230 PF00690 Cation transporter/ATPase, N-terminus SPJ_RS07230 PF00689 Cation transporting ATPase, C-terminus SPJ_RS07235 PF01545 Cation efflux family SPJ_RS07235 PF16916 Dimerisation domain of Zinc Transporter SPJ_RS07240 PF00005 ABC transporter SPJ_RS07240 PF16326 ABC transporter C-terminal domain SPJ_RS07240 PF12848 ABC transporter SPJ_RS07245 PF13735 tRNA nucleotidyltransferase domain 2 putative SPJ_RS07245 PF12627 Probable RNA and SrmB- binding site of polymerase A SPJ_RS07245 PF01743 Poly A polymerase head domain SPJ_RS07250 PF05173 Dihydrodipicolinate reductase, C-terminus SPJ_RS07250 PF01113 Dihydrodipicolinate reductase, N-terminus SPJ_RS07255 PF02645 Uncharacterised protein, DegV family COG1307 SPJ_RS07265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPJ_RS07265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPJ_RS07265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPJ_RS07265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPJ_RS07275 PF02457 DisA bacterial checkpoint controller nucleotide-binding SPJ_RS07285 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPJ_RS07290 PF10298 WhiA N-terminal LAGLIDADG-like domain SPJ_RS07290 PF14527 WhiA LAGLIDADG-like domain SPJ_RS07290 PF02650 WhiA C-terminal HTH domain SPJ_RS07295 PF01933 Uncharacterised protein family UPF0052 SPJ_RS07300 PF03668 P-loop ATPase protein family SPJ_RS07305 PF01042 Endoribonuclease L-PSP SPJ_RS07310 PF01926 50S ribosome-binding GTPase SPJ_RS07315 PF06689 ClpX C4-type zinc finger SPJ_RS07315 PF10431 C-terminal, D2-small domain, of ClpB protein SPJ_RS07315 PF07724 AAA domain (Cdc48 subfamily) SPJ_RS07325 PF00186 Dihydrofolate reductase SPJ_RS07330 PF00210 Ferritin-like domain SPJ_RS07335 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain SPJ_RS07335 PF01473 Putative cell wall binding repeat SPJ_RS07335 PF17890 Peptidoglycan hydrolase LytB WW-like domain SPJ_RS07335 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPJ_RS07340 PF00121 Triosephosphate isomerase SPJ_RS07345 PF07261 Replication initiation and membrane attachment SPJ_RS07350 PF04204 Homoserine O-succinyltransferase SPJ_RS07355 PF00156 Phosphoribosyl transferase domain SPJ_RS07360 PF13649 Methyltransferase domain SPJ_RS07370 PF17912 MalK OB fold domain SPJ_RS07370 PF03459 TOBE domain SPJ_RS07370 PF00005 ABC transporter SPJ_RS07380 PF00857 Isochorismatase family SPJ_RS07385 PF08222 CodY helix-turn-helix domain SPJ_RS07385 PF06018 CodY GAF-like domain SPJ_RS07390 PF00271 Helicase conserved C-terminal domain SPJ_RS07390 PF00270 DEAD/DEAH box helicase SPJ_RS07395 PF07690 Major Facilitator Superfamily SPJ_RS07400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPJ_RS07400 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPJ_RS07405 PF08353 Domain of unknown function (DUF1727) SPJ_RS07405 PF08245 Mur ligase middle domain SPJ_RS07410 PF07685 CobB/CobQ-like glutamine amidotransferase domain SPJ_RS07415 PF01321 Creatinase/Prolidase N-terminal domain SPJ_RS07415 PF00557 Metallopeptidase family M24 SPJ_RS07420 PF13333 Integrase core domain SPJ_RS07420 PF00665 Integrase core domain SPJ_RS07435 PF07155 ECF-type riboflavin transporter, S component SPJ_RS07440 PF08543 Phosphomethylpyrimidine kinase SPJ_RS07445 PF01416 tRNA pseudouridine synthase SPJ_RS07465 PF03831 PhnA domain SPJ_RS07465 PF08274 PhnA Zinc-Ribbon SPJ_RS07470 PF02224 Cytidylate kinase SPJ_RS07485 PF00535 Glycosyl transferase family 2 SPJ_RS07490 PF16363 GDP-mannose 4,6 dehydratase SPJ_RS07495 PF01266 FAD dependent oxidoreductase SPJ_RS07500 PF01784 NIF3 (NGG1p interacting factor 3) SPJ_RS07505 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SPJ_RS07515 PF01553 Acyltransferase SPJ_RS07525 PF00312 Ribosomal protein S15 SPJ_RS07530 PF13460 NAD(P)H-binding SPJ_RS07545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPJ_RS07545 PF03129 Anticodon binding domain SPJ_RS07545 PF02824 TGS domain SPJ_RS07545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPJ_RS07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS07555 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS07555 PF00072 Response regulator receiver domain SPJ_RS07570 PF02082 Transcriptional regulator SPJ_RS07615 PF02580 D-Tyr-tRNA(Tyr) deacylase SPJ_RS07620 PF13291 ACT domain SPJ_RS07620 PF02824 TGS domain SPJ_RS07620 PF04607 Region found in RelA / SpoT proteins SPJ_RS07635 PF00753 Metallo-beta-lactamase superfamily SPJ_RS07640 PF01431 Peptidase family M13 SPJ_RS07640 PF05649 Peptidase family M13 SPJ_RS07645 PF00005 ABC transporter SPJ_RS07650 PF00950 ABC 3 transport family SPJ_RS07655 PF01297 Zinc-uptake complex component A periplasmic SPJ_RS07660 PF08534 Redoxin SPJ_RS07675 PF02687 FtsX-like permease family SPJ_RS07675 PF00005 ABC transporter SPJ_RS07675 PF12704 MacB-like periplasmic core domain SPJ_RS07685 PF00300 Histidine phosphatase superfamily (branch 1) SPJ_RS07705 PF08264 Anticodon-binding domain of tRNA SPJ_RS07705 PF00133 tRNA synthetases class I (I, L, M and V) SPJ_RS07705 PF06827 Zinc finger found in FPG and IleRS SPJ_RS07720 PF05103 DivIVA protein SPJ_RS07735 PF04472 Cell division protein SepF SPJ_RS07740 PF01168 Alanine racemase, N-terminal domain SPJ_RS07745 PF12327 FtsZ family, C-terminal domain SPJ_RS07745 PF00091 Tubulin/FtsZ family, GTPase domain SPJ_RS07750 PF11983 Membrane-attachment and polymerisation-promoting switch SPJ_RS07750 PF02491 SHS2 domain inserted in FTSA SPJ_RS07760 PF00293 NUDIX domain SPJ_RS07765 PF01225 Mur ligase family, catalytic domain SPJ_RS07765 PF02875 Mur ligase family, glutamate ligase domain SPJ_RS07765 PF08245 Mur ligase middle domain SPJ_RS07770 PF01820 D-ala D-ala ligase N-terminus SPJ_RS07770 PF07478 D-ala D-ala ligase C-terminus SPJ_RS07775 PF02132 RecR protein SPJ_RS07775 PF13662 Toprim domain SPJ_RS07780 PF03717 Penicillin-binding Protein dimerisation domain SPJ_RS07780 PF00905 Penicillin binding protein transpeptidase domain SPJ_RS07790 PF00480 ROK family SPJ_RS07795 PF00701 Dihydrodipicolinate synthetase family SPJ_RS07815 PF04074 YhcH/YjgK/YiaL SPJ_RS07820 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS07825 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS07835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPJ_RS07835 PF00367 phosphotransferase system, EIIB SPJ_RS07835 PF02378 Phosphotransferase system, EIIC SPJ_RS07840 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPJ_RS07845 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPJ_RS07845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPJ_RS07850 PF13088 BNR repeat-like domain SPJ_RS07850 PF02973 Sialidase, N-terminal domain SPJ_RS07850 PF02012 BNR/Asp-box repeat SPJ_RS07855 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS07860 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS07865 PF01547 Bacterial extracellular solute-binding protein SPJ_RS07875 PF02973 Sialidase, N-terminal domain SPJ_RS07875 PF13088 BNR repeat-like domain SPJ_RS07875 PF04650 YSIRK type signal peptide SPJ_RS07890 PF05448 Acetyl xylan esterase (AXE1) SPJ_RS07895 PF17191 RecG wedge domain SPJ_RS07895 PF00271 Helicase conserved C-terminal domain SPJ_RS07895 PF00270 DEAD/DEAH box helicase SPJ_RS07900 PF01168 Alanine racemase, N-terminal domain SPJ_RS07900 PF00842 Alanine racemase, C-terminal domain SPJ_RS07905 PF01648 4'-phosphopantetheinyl transferase superfamily SPJ_RS07910 PF00793 DAHP synthetase I family SPJ_RS07915 PF00793 DAHP synthetase I family SPJ_RS07920 PF07517 SecA DEAD-like domain SPJ_RS07920 PF02810 SEC-C motif SPJ_RS07920 PF07516 SecA Wing and Scaffold domain SPJ_RS07920 PF01043 SecA preprotein cross-linking domain SPJ_RS07930 PF00005 ABC transporter SPJ_RS07965 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SPJ_RS07965 PF01926 50S ribosome-binding GTPase SPJ_RS07970 PF00881 Nitroreductase family SPJ_RS07975 PF01695 IstB-like ATP binding protein SPJ_RS07975 PF07319 Primosomal protein DnaI N-terminus SPJ_RS07985 PF03477 ATP cone domain SPJ_RS07990 PF00392 Bacterial regulatory proteins, gntR family SPJ_RS07995 PF00005 ABC transporter SPJ_RS08010 PF00005 ABC transporter SPJ_RS08010 PF13732 Domain of unknown function (DUF4162) SPJ_RS08030 PF00480 ROK family SPJ_RS08035 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPJ_RS08035 PF00367 phosphotransferase system, EIIB SPJ_RS08035 PF02378 Phosphotransferase system, EIIC SPJ_RS08045 PF08244 Glycosyl hydrolases family 32 C terminal SPJ_RS08045 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPJ_RS08050 PF00356 Bacterial regulatory proteins, lacI family SPJ_RS08055 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SPJ_RS08060 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SPJ_RS08060 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SPJ_RS08090 PF03793 PASTA domain SPJ_RS08090 PF00069 Protein kinase domain SPJ_RS08100 PF01029 NusB family SPJ_RS08100 PF01189 16S rRNA methyltransferase RsmB/F SPJ_RS08105 PF00551 Formyl transferase SPJ_RS08105 PF02911 Formyl transferase, C-terminal domain SPJ_RS08110 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SPJ_RS08110 PF04851 Type III restriction enzyme, res subunit SPJ_RS08110 PF18074 Primosomal protein N C-terminal domain SPJ_RS08110 PF17764 3′ DNA-binding domain (3′BD) SPJ_RS08110 PF00271 Helicase conserved C-terminal domain SPJ_RS08115 PF01192 RNA polymerase Rpb6 SPJ_RS08120 PF00625 Guanylate kinase SPJ_RS08125 PF01966 HD domain SPJ_RS08125 PF12072 Domain of unknown function (DUF3552) SPJ_RS08125 PF00013 KH domain SPJ_RS08130 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SPJ_RS08140 PF05636 HIGH Nucleotidyl Transferase SPJ_RS08145 PF13649 Methyltransferase domain SPJ_RS08160 PF01966 HD domain SPJ_RS08165 PF01467 Cytidylyltransferase-like SPJ_RS08170 PF01985 CRS1 / YhbY (CRM) domain SPJ_RS08175 PF01926 50S ribosome-binding GTPase SPJ_RS08190 PF00924 Mechanosensitive ion channel SPJ_RS08210 PF16996 Accessory secretory protein Sec Asp4 SPJ_RS08220 PF00534 Glycosyl transferases group 1 SPJ_RS08225 PF01043 SecA preprotein cross-linking domain SPJ_RS08225 PF07517 SecA DEAD-like domain SPJ_RS08225 PF07516 SecA Wing and Scaffold domain SPJ_RS08235 PF16929 Accessory Sec system GspB-transporter SPJ_RS08240 PF16993 Accessory Sec system protein Asp1 SPJ_RS08245 PF00344 SecY translocase SPJ_RS08250 PF00535 Glycosyl transferase family 2 SPJ_RS08255 PF01501 Glycosyl transferase family 8 SPJ_RS08260 PF01501 Glycosyl transferase family 8 SPJ_RS08265 PF01501 Glycosyl transferase family 8 SPJ_RS08265 PF08759 Glycosyltransferase GT-D fold SPJ_RS08275 PF01501 Glycosyl transferase family 8 SPJ_RS08275 PF00535 Glycosyl transferase family 2 SPJ_RS08280 PF01501 Glycosyl transferase family 8 SPJ_RS08285 PF01501 Glycosyl transferase family 8 SPJ_RS08285 PF00535 Glycosyl transferase family 2 SPJ_RS08310 PF00085 Thioredoxin SPJ_RS08315 PF14489 QueF-like protein SPJ_RS08315 PF06508 Queuosine biosynthesis protein QueC SPJ_RS08325 PF00230 Major intrinsic protein SPJ_RS08340 PF01432 Peptidase family M3 SPJ_RS08340 PF08439 Oligopeptidase F SPJ_RS08345 PF04452 RNA methyltransferase SPJ_RS08405 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPJ_RS08405 PF12002 MgsA AAA+ ATPase C terminal SPJ_RS08405 PF16193 AAA C-terminal domain SPJ_RS08415 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPJ_RS08415 PF08244 Glycosyl hydrolases family 32 C terminal SPJ_RS08420 PF01547 Bacterial extracellular solute-binding protein SPJ_RS08425 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08430 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08435 PF13407 Periplasmic binding protein domain SPJ_RS08435 PF00356 Bacterial regulatory proteins, lacI family SPJ_RS08440 PF05043 Mga helix-turn-helix domain SPJ_RS08440 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPJ_RS08440 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SPJ_RS08460 PF03780 Asp23 family, cell envelope-related function SPJ_RS08465 PF05532 CsbD-like SPJ_RS08480 PF03781 Sulfatase-modifying factor enzyme 1 SPJ_RS08485 PF16347 Domain of unknown function (DUF4976) SPJ_RS08485 PF00884 Sulfatase SPJ_RS08490 PF02378 Phosphotransferase system, EIIC SPJ_RS08495 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPJ_RS08500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPJ_RS08510 PF02378 Phosphotransferase system, EIIC SPJ_RS08515 PF00480 ROK family SPJ_RS08525 PF06750 Bacterial Peptidase A24 N-terminal domain SPJ_RS08525 PF01478 Type IV leader peptidase family SPJ_RS08540 PF00290 Tryptophan synthase alpha chain SPJ_RS08545 PF00291 Pyridoxal-phosphate dependent enzyme SPJ_RS08550 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SPJ_RS08555 PF00218 Indole-3-glycerol phosphate synthase SPJ_RS08560 PF00591 Glycosyl transferase family, a/b domain SPJ_RS08560 PF02885 Glycosyl transferase family, helical bundle domain SPJ_RS08565 PF00117 Glutamine amidotransferase class-I SPJ_RS08570 PF04715 Anthranilate synthase component I, N terminal region SPJ_RS08570 PF00425 chorismate binding enzyme SPJ_RS08585 PF00356 Bacterial regulatory proteins, lacI family SPJ_RS08595 PF02308 MgtC family SPJ_RS08600 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08605 PF08402 TOBE domain SPJ_RS08605 PF00005 ABC transporter SPJ_RS08620 PF16363 GDP-mannose 4,6 dehydratase SPJ_RS08625 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPJ_RS08625 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPJ_RS08630 PF01895 PhoU domain SPJ_RS08645 PF13229 Right handed beta helix region SPJ_RS08645 PF12708 Pectate lyase superfamily protein SPJ_RS08645 PF04650 YSIRK type signal peptide SPJ_RS08660 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SPJ_RS08665 PF02397 Bacterial sugar transferase SPJ_RS08670 PF00005 ABC transporter SPJ_RS08670 PF00664 ABC transporter transmembrane region SPJ_RS08675 PF00005 ABC transporter SPJ_RS08675 PF00664 ABC transporter transmembrane region SPJ_RS08700 PF03372 Endonuclease/Exonuclease/phosphatase family SPJ_RS08715 PF00156 Phosphoribosyl transferase domain SPJ_RS08720 PF00860 Permease family SPJ_RS08725 PF14207 DpnD/PcfM-like protein SPJ_RS08730 PF17726 Dam-replacing HTH domain SPJ_RS08730 PF06044 Dam-replacing family SPJ_RS08740 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPJ_RS08740 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPJ_RS08745 PF10509 Galactokinase galactose-binding signature SPJ_RS08745 PF08544 GHMP kinases C terminal SPJ_RS08745 PF00288 GHMP kinases N terminal domain SPJ_RS08750 PF00356 Bacterial regulatory proteins, lacI family SPJ_RS08755 PF08240 Alcohol dehydrogenase GroES-like domain SPJ_RS08755 PF00107 Zinc-binding dehydrogenase SPJ_RS08760 PF13411 MerR HTH family regulatory protein SPJ_RS08765 PF01545 Cation efflux family SPJ_RS08775 PF04973 Nicotinamide mononucleotide transporter SPJ_RS08780 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08785 PF00571 CBS domain SPJ_RS08785 PF00005 ABC transporter SPJ_RS08805 PF05343 M42 glutamyl aminopeptidase SPJ_RS08810 PF01370 NAD dependent epimerase/dehydratase family SPJ_RS08820 PF01032 FecCD transport family SPJ_RS08825 PF01032 FecCD transport family SPJ_RS08830 PF00005 ABC transporter SPJ_RS08835 PF01497 Periplasmic binding protein SPJ_RS08840 PF01809 Putative membrane protein insertion efficiency factor SPJ_RS08845 PF01479 S4 domain SPJ_RS08845 PF00849 RNA pseudouridylate synthase SPJ_RS08850 PF04079 Segregation and condensation complex subunit ScpB SPJ_RS08855 PF02616 Segregation and condensation protein ScpA SPJ_RS08860 PF02899 Phage integrase, N-terminal SAM-like domain SPJ_RS08860 PF00589 Phage integrase family SPJ_RS08875 PF01725 Ham1 family SPJ_RS08880 PF01177 Asp/Glu/Hydantoin racemase SPJ_RS08885 PF03672 Uncharacterised protein family (UPF0154) SPJ_RS08890 PF16657 Maltogenic Amylase, C-terminal domain SPJ_RS08890 PF00128 Alpha amylase, catalytic domain SPJ_RS08895 PF00367 phosphotransferase system, EIIB SPJ_RS08895 PF02378 Phosphotransferase system, EIIC SPJ_RS08900 PF00392 Bacterial regulatory proteins, gntR family SPJ_RS08900 PF07702 UTRA domain SPJ_RS08905 PF00005 ABC transporter SPJ_RS08905 PF09383 NIL domain SPJ_RS08910 PF02653 Branched-chain amino acid transport system / permease component SPJ_RS08920 PF00005 ABC transporter SPJ_RS08920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPJ_RS08925 PF00005 ABC transporter SPJ_RS08925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPJ_RS08930 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08930 PF12911 N-terminal TM domain of oligopeptide transport permease C SPJ_RS08935 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPJ_RS08950 PF00128 Alpha amylase, catalytic domain SPJ_RS08960 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08965 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS08970 PF01547 Bacterial extracellular solute-binding protein SPJ_RS08975 PF16874 Glycosyl hydrolase family 36 C-terminal domain SPJ_RS08975 PF16875 Glycosyl hydrolase family 36 N-terminal domain SPJ_RS08980 PF02311 AraC-like ligand binding domain SPJ_RS08980 PF12833 Helix-turn-helix domain SPJ_RS08985 PF03099 Biotin/lipoate A/B protein ligase family SPJ_RS08985 PF02237 Biotin protein ligase C terminal domain SPJ_RS08995 PF13683 Integrase core domain SPJ_RS08995 PF01610 Transposase SPJ_RS09110 PF05958 tRNA (Uracil-5-)-methyltransferase SPJ_RS09110 PF01938 TRAM domain SPJ_RS09115 PF02631 RecX family SPJ_RS09120 PF04167 Protein of unknown function (DUF402) SPJ_RS09135 PF13683 Integrase core domain SPJ_RS09135 PF01610 Transposase SPJ_RS09140 PF00118 TCP-1/cpn60 chaperonin family SPJ_RS09145 PF00166 Chaperonin 10 Kd subunit SPJ_RS09150 PF00436 Single-strand binding protein family SPJ_RS09160 PF01510 N-acetylmuramoyl-L-alanine amidase SPJ_RS09160 PF01473 Putative cell wall binding repeat SPJ_RS09270 PF04607 Region found in RelA / SpoT proteins SPJ_RS09270 PF13291 ACT domain SPJ_RS09270 PF02824 TGS domain SPJ_RS09350 PF00436 Single-strand binding protein family SPJ_RS09440 PF02796 Helix-turn-helix domain of resolvase SPJ_RS09440 PF00239 Resolvase, N terminal domain SPJ_RS09445 PF00106 short chain dehydrogenase SPJ_RS09450 PF14794 Domain of unknown function (DUF4479) SPJ_RS09450 PF01588 Putative tRNA binding domain SPJ_RS09455 PF00085 Thioredoxin SPJ_RS09490 PF00664 ABC transporter transmembrane region SPJ_RS09490 PF00005 ABC transporter SPJ_RS09495 PF00005 ABC transporter SPJ_RS09495 PF00664 ABC transporter transmembrane region SPJ_RS09515 PF01709 Transcriptional regulator SPJ_RS09520 PF01289 Thiol-activated cytolysin SPJ_RS09520 PF17440 Thiol-activated cytolysin beta sandwich domain SPJ_RS09580 PF01473 Putative cell wall binding repeat SPJ_RS09580 PF01510 N-acetylmuramoyl-L-alanine amidase SPJ_RS09590 PF00154 recA bacterial DNA recombination protein SPJ_RS09595 PF18146 Damage-inducible protein CinA KH domain SPJ_RS09595 PF00994 Probable molybdopterin binding domain SPJ_RS09595 PF02464 Competence-damaged protein SPJ_RS09600 PF03816 Cell envelope-related transcriptional attenuator domain SPJ_RS09610 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SPJ_RS09640 PF05147 Lanthionine synthetase C-like protein SPJ_RS09640 PF13575 Domain of unknown function (DUF4135) SPJ_RS09655 PF00664 ABC transporter transmembrane region SPJ_RS09655 PF00005 ABC transporter SPJ_RS09655 PF03412 Peptidase C39 family SPJ_RS09660 PF00082 Subtilase family SPJ_RS09670 PF00005 ABC transporter SPJ_RS09670 PF02687 FtsX-like permease family SPJ_RS09670 PF12704 MacB-like periplasmic core domain SPJ_RS09680 PF00334 Nucleoside diphosphate kinase SPJ_RS09685 PF04997 RNA polymerase Rpb1, domain 1 SPJ_RS09685 PF05000 RNA polymerase Rpb1, domain 4 SPJ_RS09685 PF04983 RNA polymerase Rpb1, domain 3 SPJ_RS09685 PF00623 RNA polymerase Rpb1, domain 2 SPJ_RS09685 PF04998 RNA polymerase Rpb1, domain 5 SPJ_RS09690 PF04560 RNA polymerase Rpb2, domain 7 SPJ_RS09690 PF04565 RNA polymerase Rpb2, domain 3 SPJ_RS09690 PF00562 RNA polymerase Rpb2, domain 6 SPJ_RS09690 PF04561 RNA polymerase Rpb2, domain 2 SPJ_RS09690 PF10385 RNA polymerase beta subunit external 1 domain SPJ_RS09690 PF04563 RNA polymerase beta subunit SPJ_RS09700 PF01595 Cyclin M transmembrane N-terminal domain SPJ_RS09700 PF03471 Transporter associated domain SPJ_RS09700 PF00571 CBS domain SPJ_RS09705 PF01223 DNA/RNA non-specific endonuclease SPJ_RS09710 PF11772 DNA-directed RNA polymerase subunit beta SPJ_RS09715 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPJ_RS09725 PF13180 PDZ domain SPJ_RS09725 PF05362 Lon protease (S16) C-terminal proteolytic domain SPJ_RS09730 PF01467 Cytidylyltransferase-like SPJ_RS09740 PF03590 Aspartate-ammonia ligase SPJ_RS09750 PF01027 Inhibitor of apoptosis-promoting Bax1 SPJ_RS09755 PF00588 SpoU rRNA Methylase family SPJ_RS09755 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPJ_RS09760 PF00708 Acylphosphatase SPJ_RS09765 PF02096 60Kd inner membrane protein SPJ_RS09770 PF04055 Radical SAM superfamily SPJ_RS09775 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SPJ_RS09775 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SPJ_RS09780 PF09182 Bacterial purine repressor, N-terminal SPJ_RS09780 PF00156 Phosphoribosyl transferase domain SPJ_RS09785 PF01966 HD domain SPJ_RS09785 PF01336 OB-fold nucleic acid binding domain SPJ_RS09790 PF02646 RmuC family SPJ_RS09795 PF04263 Thiamin pyrophosphokinase, catalytic domain SPJ_RS09795 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SPJ_RS09800 PF00834 Ribulose-phosphate 3 epimerase family SPJ_RS09805 PF16745 RsgA N-terminal domain SPJ_RS09805 PF03193 RsgA GTPase SPJ_RS09810 PF00398 Ribosomal RNA adenine dimethylase SPJ_RS09820 PF00005 ABC transporter SPJ_RS09820 PF12704 MacB-like periplasmic core domain SPJ_RS09820 PF02687 FtsX-like permease family SPJ_RS09840 PF13662 Toprim domain SPJ_RS09840 PF13331 Domain of unknown function (DUF4093) SPJ_RS09845 PF01026 TatD related DNase SPJ_RS09855 PF00468 Ribosomal protein L34 SPJ_RS09860 PF00155 Aminotransferase class I and II SPJ_RS09870 PF00582 Universal stress protein family SPJ_RS09880 PF17763 Glutaminase/Asparaginase C-terminal domain SPJ_RS09880 PF00710 Asparaginase, N-terminal SPJ_RS09890 PF00356 Bacterial regulatory proteins, lacI family SPJ_RS09895 PF00072 Response regulator receiver domain SPJ_RS09895 PF00196 Bacterial regulatory proteins, luxR family SPJ_RS09900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS09900 PF07730 Histidine kinase SPJ_RS09910 PF00005 ABC transporter SPJ_RS10000 PF02357 Transcription termination factor nusG SPJ_RS10000 PF00467 KOW motif SPJ_RS10010 PF00471 Ribosomal protein L33 SPJ_RS10015 PF00905 Penicillin binding protein transpeptidase domain SPJ_RS10015 PF00912 Transglycosylase SPJ_RS10020 PF00849 RNA pseudouridylate synthase SPJ_RS10025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SPJ_RS10025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SPJ_RS10030 PF12704 MacB-like periplasmic core domain SPJ_RS10030 PF02687 FtsX-like permease family SPJ_RS10045 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SPJ_RS10045 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SPJ_RS10055 PF00005 ABC transporter SPJ_RS10060 PF00392 Bacterial regulatory proteins, gntR family SPJ_RS10060 PF07702 UTRA domain SPJ_RS10065 PF00232 Glycosyl hydrolase family 1 SPJ_RS10070 PF02378 Phosphotransferase system, EIIC SPJ_RS10075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPJ_RS10080 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPJ_RS10085 PF00171 Aldehyde dehydrogenase family SPJ_RS10085 PF00465 Iron-containing alcohol dehydrogenase SPJ_RS10095 PF01451 Low molecular weight phosphotyrosine protein phosphatase SPJ_RS10105 PF02779 Transketolase, pyrimidine binding domain SPJ_RS10105 PF02780 Transketolase, C-terminal domain SPJ_RS10105 PF00456 Transketolase, thiamine diphosphate binding domain SPJ_RS10120 PF00596 Class II Aldolase and Adducin N-terminal domain SPJ_RS10125 PF01261 Xylose isomerase-like TIM barrel SPJ_RS10130 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPJ_RS10135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPJ_RS10140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPJ_RS10145 PF03611 PTS system sugar-specific permease component SPJ_RS10155 PF01424 R3H domain SPJ_RS10155 PF14804 Jag N-terminus SPJ_RS10160 PF02096 60Kd inner membrane protein SPJ_RS10165 PF00825 Ribonuclease P SPJ_RS10170 PF00871 Acetokinase family SPJ_RS10180 PF01209 ubiE/COQ5 methyltransferase family SPJ_RS10205 PF07963 Prokaryotic N-terminal methylation motif SPJ_RS10210 PF00482 Type II secretion system (T2SS), protein F SPJ_RS10215 PF00437 Type II/IV secretion system protein SPJ_RS10225 PF13823 Alcohol dehydrogenase GroES-associated SPJ_RS10225 PF00107 Zinc-binding dehydrogenase SPJ_RS10225 PF08240 Alcohol dehydrogenase GroES-like domain SPJ_RS10230 PF01979 Amidohydrolase family SPJ_RS10235 PF01757 Acyltransferase family SPJ_RS10240 PF01702 Queuine tRNA-ribosyltransferase SPJ_RS10250 PF01470 Pyroglutamyl peptidase SPJ_RS10255 PF06993 Protein of unknown function (DUF1304) SPJ_RS10270 PF08645 Polynucleotide kinase 3 phosphatase SPJ_RS10270 PF00475 Imidazoleglycerol-phosphate dehydratase SPJ_RS10275 PF01554 MatE SPJ_RS10280 PF14821 Threonine synthase N terminus SPJ_RS10280 PF00291 Pyridoxal-phosphate dependent enzyme SPJ_RS10370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPJ_RS10375 PF00749 tRNA synthetases class I (E and Q), catalytic domain SPJ_RS10380 PF00342 Phosphoglucose isomerase SPJ_RS10390 PF07722 Peptidase C26 SPJ_RS10395 PF00664 ABC transporter transmembrane region SPJ_RS10395 PF00005 ABC transporter SPJ_RS10405 PF00664 ABC transporter transmembrane region SPJ_RS10405 PF00005 ABC transporter SPJ_RS10410 PF05190 MutS family domain IV SPJ_RS10410 PF05188 MutS domain II SPJ_RS10410 PF01624 MutS domain I SPJ_RS10410 PF00488 MutS domain V SPJ_RS10410 PF05192 MutS domain III SPJ_RS10415 PF02863 Arginine repressor, C-terminal domain SPJ_RS10415 PF01316 Arginine repressor, DNA binding domain SPJ_RS10420 PF05746 DALR anticodon binding domain SPJ_RS10420 PF03485 Arginyl tRNA synthetase N terminal domain SPJ_RS10420 PF00750 tRNA synthetases class I (R) SPJ_RS10435 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS10435 PF00072 Response regulator receiver domain SPJ_RS10440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS10440 PF16736 Single Cache-like SPJ_RS10440 PF00989 PAS fold SPJ_RS10440 PF00512 His Kinase A (phospho-acceptor) domain SPJ_RS10445 PF12849 PBP superfamily domain SPJ_RS10450 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS10455 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS10460 PF00005 ABC transporter SPJ_RS10465 PF01895 PhoU domain SPJ_RS10480 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SPJ_RS10480 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SPJ_RS10485 PF00483 Nucleotidyl transferase SPJ_RS10495 PF01812 5-formyltetrahydrofolate cyclo-ligase family SPJ_RS10500 PF01546 Peptidase family M20/M25/M40 SPJ_RS10500 PF07687 Peptidase dimerisation domain SPJ_RS10505 PF00132 Bacterial transferase hexapeptide (six repeats) SPJ_RS10505 PF14602 Hexapeptide repeat of succinyl-transferase SPJ_RS10505 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SPJ_RS10510 PF00892 EamA-like transporter family SPJ_RS10515 PF00912 Transglycosylase SPJ_RS10515 PF00905 Penicillin binding protein transpeptidase domain SPJ_RS10520 PF01479 S4 domain SPJ_RS10520 PF00579 tRNA synthetases class I (W and Y) SPJ_RS10525 PF00403 Heavy-metal-associated domain SPJ_RS10535 PF13847 Methyltransferase domain SPJ_RS10555 PF00343 Carbohydrate phosphorylase SPJ_RS10560 PF02446 4-alpha-glucanotransferase SPJ_RS10565 PF13416 Bacterial extracellular solute-binding protein SPJ_RS10570 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS10575 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS10585 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SPJ_RS10585 PF00356 Bacterial regulatory proteins, lacI family SPJ_RS10595 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPJ_RS10595 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPJ_RS10600 PF02938 GAD domain SPJ_RS10600 PF00152 tRNA synthetases class II (D, K and N) SPJ_RS10600 PF01336 OB-fold nucleic acid binding domain SPJ_RS10630 PF01381 Helix-turn-helix SPJ_RS10640 PF03129 Anticodon binding domain SPJ_RS10640 PF13393 Histidyl-tRNA synthetase SPJ_RS10660 PF01883 Iron-sulfur cluster assembly protein SPJ_RS10670 PF00920 Dehydratase family SPJ_RS10675 PF02780 Transketolase, C-terminal domain SPJ_RS10675 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SPJ_RS10675 PF02779 Transketolase, pyrimidine binding domain SPJ_RS10680 PF00456 Transketolase, thiamine diphosphate binding domain SPJ_RS10685 PF03611 PTS system sugar-specific permease component SPJ_RS10695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPJ_RS10710 PF01783 Ribosomal L32p protein family SPJ_RS10715 PF00471 Ribosomal protein L33 SPJ_RS10750 PF00480 ROK family SPJ_RS10755 PF09261 Alpha mannosidase middle domain SPJ_RS10755 PF01074 Glycosyl hydrolases family 38 N-terminal domain SPJ_RS10755 PF07748 Glycosyl hydrolases family 38 C-terminal domain SPJ_RS10755 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SPJ_RS10755 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SPJ_RS10765 PF07971 Glycosyl hydrolase family 92 SPJ_RS10765 PF17678 Glycosyl hydrolase family 92 N-terminal domain SPJ_RS10780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPJ_RS10780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPJ_RS10785 PF00696 Amino acid kinase family SPJ_RS10790 PF03606 C4-dicarboxylate anaerobic carrier SPJ_RS10795 PF01546 Peptidase family M20/M25/M40 SPJ_RS10805 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SPJ_RS10805 PF07581 The GLUG motif SPJ_RS10805 PF00746 LPXTG cell wall anchor motif SPJ_RS10805 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SPJ_RS10805 PF07501 G5 domain SPJ_RS10805 PF04650 YSIRK type signal peptide SPJ_RS10810 PF04650 YSIRK type signal peptide SPJ_RS10810 PF07501 G5 domain SPJ_RS10810 PF00746 LPXTG cell wall anchor motif SPJ_RS10810 PF00728 Glycosyl hydrolase family 20, catalytic domain SPJ_RS10820 PF00465 Iron-containing alcohol dehydrogenase SPJ_RS10825 PF07882 L-fucose isomerase, second N-terminal domain SPJ_RS10825 PF07881 L-fucose isomerase, first N-terminal domain SPJ_RS10825 PF02952 L-fucose isomerase, C-terminal domain SPJ_RS10830 PF08306 Glycosyl hydrolase family 98 SPJ_RS10830 PF08307 Glycosyl hydrolase family 98 C-terminal domain SPJ_RS10830 PF08305 NPCBM/NEW2 domain SPJ_RS10840 PF03613 PTS system mannose/fructose/sorbose family IID component SPJ_RS10850 PF03830 PTS system sorbose subfamily IIB component SPJ_RS10860 PF05025 RbsD / FucU transport protein family SPJ_RS10865 PF00596 Class II Aldolase and Adducin N-terminal domain SPJ_RS10870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPJ_RS10870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPJ_RS10875 PF08220 DeoR-like helix-turn-helix domain SPJ_RS10875 PF00455 DeoR C terminal sensor domain SPJ_RS10880 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SPJ_RS10880 PF01297 Zinc-uptake complex component A periplasmic SPJ_RS10885 PF00950 ABC 3 transport family SPJ_RS10890 PF00005 ABC transporter SPJ_RS10895 PF01047 MarR family SPJ_RS10900 PF04914 DltD protein SPJ_RS10905 PF00550 Phosphopantetheine attachment site SPJ_RS10910 PF03062 MBOAT, membrane-bound O-acyltransferase family SPJ_RS10915 PF00501 AMP-binding enzyme SPJ_RS10915 PF13193 AMP-binding enzyme C-terminal domain SPJ_RS10925 PF07690 Major Facilitator Superfamily SPJ_RS10930 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SPJ_RS10945 PF00230 Major intrinsic protein SPJ_RS10950 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SPJ_RS10950 PF01266 FAD dependent oxidoreductase SPJ_RS10955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPJ_RS10955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPJ_RS10965 PF01430 Hsp33 protein SPJ_RS10970 PF01207 Dihydrouridine synthase (Dus) SPJ_RS10980 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SPJ_RS10985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPJ_RS10985 PF00672 HAMP domain SPJ_RS10985 PF00512 His Kinase A (phospho-acceptor) domain SPJ_RS10990 PF00486 Transcriptional regulatory protein, C terminal SPJ_RS10990 PF00072 Response regulator receiver domain SPJ_RS10995 PF02861 Clp amino terminal domain, pathogenicity island component SPJ_RS10995 PF10431 C-terminal, D2-small domain, of ClpB protein SPJ_RS10995 PF07724 AAA domain (Cdc48 subfamily) SPJ_RS10995 PF00004 ATPase family associated with various cellular activities (AAA) SPJ_RS10995 PF17871 AAA lid domain SPJ_RS11000 PF05848 CtsR N-terminal HTH domain SPJ_RS11000 PF17727 CtsR C-terminal dimerization domain SPJ_RS11005 PF00005 ABC transporter SPJ_RS11010 PF09084 NMT1/THI5 like SPJ_RS11015 PF00528 Binding-protein-dependent transport system inner membrane component SPJ_RS11035 PF00772 DnaB-like helicase N terminal domain SPJ_RS11035 PF03796 DnaB-like helicase C terminal domain SPJ_RS11040 PF01281 Ribosomal protein L9, N-terminal domain SPJ_RS11040 PF03948 Ribosomal protein L9, C-terminal domain SPJ_RS11045 PF02272 DHHA1 domain SPJ_RS11045 PF01368 DHH family SPJ_RS11050 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SPJ_RS11050 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SPJ_RS11060 PF04851 Type III restriction enzyme, res subunit SPJ_RS11060 PF00271 Helicase conserved C-terminal domain SPJ_RS11065 PF01205 Uncharacterized protein family UPF0029 SPJ_RS11065 PF09186 Domain of unknown function (DUF1949) SPJ_RS11070 PF00291 Pyridoxal-phosphate dependent enzyme SPJ_RS11080 PF13358 DDE superfamily endonuclease SPJ_RS11090 PF00889 Elongation factor TS SPJ_RS11095 PF00318 Ribosomal protein S2 SPJ_RS11100 PF05257 CHAP domain SPJ_RS11100 PF01476 LysM domain SPJ_RS11110 PF04085 rod shape-determining protein MreC SPJ_RS11115 PF02361 Cobalt transport protein SPJ_RS11120 PF00005 ABC transporter SPJ_RS11125 PF00005 ABC transporter SPJ_RS11130 PF01066 CDP-alcohol phosphatidyltransferase SPJ_RS11140 PF00675 Insulinase (Peptidase family M16) SPJ_RS11140 PF05193 Peptidase M16 inactive domain SPJ_RS11145 PF00675 Insulinase (Peptidase family M16) SPJ_RS11145 PF05193 Peptidase M16 inactive domain SPJ_RS11155 PF02463 RecF/RecN/SMC N terminal domain SPJ_RS11160 PF00478 IMP dehydrogenase / GMP reductase domain SPJ_RS11160 PF00571 CBS domain SPJ_RS11165 PF00579 tRNA synthetases class I (W and Y) SPJ_RS11170 PF00005 ABC transporter SPJ_RS11170 PF12848 ABC transporter SPJ_RS11220 PF03047 COMC family SPJ_RS11230 PF02590 Predicted SPOUT methyltransferase SPJ_RS11235 PF13180 PDZ domain SPJ_RS11240 PF02195 ParB-like nuclease domain SPJ_RS11240 PF17762 HTH domain found in ParB protein SPJ_RS11305 PF00664 ABC transporter transmembrane region SPJ_RS11305 PF03412 Peptidase C39 family SPJ_RS11305 PF00005 ABC transporter SPJ_RS11310 PF03412 Peptidase C39 family SPJ_RS11310 PF00005 ABC transporter SPJ_RS11310 PF00664 ABC transporter transmembrane region