locus-tag class description spr0001 PF08299 Bacterial dnaA protein helix-turn-helix spr0001 PF00308 Bacterial dnaA protein spr0002 PF00712 DNA polymerase III beta subunit, N-terminal domain spr0002 PF02767 DNA polymerase III beta subunit, central domain spr0002 PF02768 DNA polymerase III beta subunit, C-terminal domain spr0004 PF06071 Protein of unknown function (DUF933) spr0004 PF01926 50S ribosome-binding GTPase spr0005 PF01195 Peptidyl-tRNA hydrolase spr0006 PF00271 Helicase conserved C-terminal domain spr0006 PF17757 UvrB interaction domain spr0006 PF03461 TRCF domain spr0006 PF00270 DEAD/DEAH box helicase spr0006 PF02559 CarD-like/TRCF domain spr0007 PF01479 S4 domain spr0010 PF11734 TilS substrate C-terminal domain spr0010 PF01171 PP-loop family spr0011 PF00156 Phosphoribosyl transferase domain spr0012 PF01434 Peptidase family M41 spr0012 PF06480 FtsH Extracellular spr0012 PF17862 AAA+ lid domain spr0012 PF00004 ATPase family associated with various cellular activities (AAA) spr0016 PF13358 DDE superfamily endonuclease spr0021 PF00709 Adenylosuccinate synthetase spr0022 PF14437 MafB19-like deaminase spr0023 PF00692 dUTPase spr0026 PF00484 Carbonic anhydrase spr0028 PF14572 Phosphoribosyl synthetase-associated domain spr0028 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase spr0032 PF01367 5'-3' exonuclease, C-terminal SAM fold spr0032 PF00476 DNA polymerase family A spr0032 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain spr0033 PF13380 CoA binding domain spr0034 PF03601 Conserved hypothetical protein 698 spr0035 PF00155 Aminotransferase class I and II spr0036 PF11967 Recombination protein O N terminal spr0036 PF02565 Recombination protein O C terminal spr0037 PF02504 Fatty acid synthesis protein spr0038 PF00550 Phosphopantetheine attachment site spr0041 PF13683 Integrase core domain spr0041 PF01610 Transposase spr0043 PF00664 ABC transporter transmembrane region spr0043 PF00005 ABC transporter spr0043 PF03412 Peptidase C39 family spr0045 PF01259 SAICAR synthetase spr0046 PF02769 AIR synthase related protein, C-terminal domain spr0046 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain spr0046 PF00586 AIR synthase related protein, N-terminal domain spr0047 PF00156 Phosphoribosyl transferase domain spr0048 PF02769 AIR synthase related protein, C-terminal domain spr0048 PF00586 AIR synthase related protein, N-terminal domain spr0049 PF00551 Formyl transferase spr0050 PF04892 VanZ like family spr0051 PF02142 MGS-like domain spr0051 PF01808 AICARFT/IMPCHase bienzyme spr0052 PF02843 Phosphoribosylglycinamide synthetase, C domain spr0052 PF02844 Phosphoribosylglycinamide synthetase, N domain spr0052 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain spr0053 PF00731 AIR carboxylase spr0054 PF02222 ATP-grasp domain spr0054 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain spr0054 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain spr0056 PF10397 Adenylosuccinate lyase C-terminus spr0056 PF00206 Lyase spr0057 PF07501 G5 domain spr0057 PF00728 Glycosyl hydrolase family 20, catalytic domain spr0057 PF04650 YSIRK type signal peptide spr0057 PF00746 LPXTG cell wall anchor motif spr0058 PF00392 Bacterial regulatory proteins, gntR family spr0058 PF07702 UTRA domain spr0059 PF01301 Glycosyl hydrolases family 35 spr0060 PF03830 PTS system sorbose subfamily IIB component spr0061 PF03609 PTS system sorbose-specific iic component spr0062 PF03613 PTS system mannose/fructose/sorbose family IID component spr0064 PF01380 SIS domain spr0065 PF01263 Aldose 1-epimerase spr0066 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily spr0067 PF02583 Metal-sensitive transcriptional repressor spr0070 PF02386 Cation transport protein spr0071 PF02080 TrkA-C domain spr0071 PF02254 TrkA-N domain spr0076 PF00486 Transcriptional regulatory protein, C terminal spr0076 PF00072 Response regulator receiver domain spr0077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0077 PF00512 His Kinase A (phospho-acceptor) domain spr0078 PF00163 Ribosomal protein S4/S9 N-terminal domain spr0078 PF01479 S4 domain spr0081 PF00528 Binding-protein-dependent transport system inner membrane component spr0082 PF00528 Binding-protein-dependent transport system inner membrane component spr0083 PF12010 Domain of unknown function (DUF3502) spr0084 PF17773 UPF0176 acylphosphatase like domain spr0084 PF12368 Rhodanase C-terminal spr0084 PF00581 Rhodanese-like domain spr0089 PF03551 Transcriptional regulator PadR-like family spr0089 PF10400 Virulence activator alpha C-term spr0092 PF02719 Polysaccharide biosynthesis protein spr0093 PF13419 Haloacid dehalogenase-like hydrolase spr0094 PF03313 Serine dehydratase alpha chain spr0095 PF03315 Serine dehydratase beta chain spr0095 PF01842 ACT domain spr0100 PF12704 MacB-like periplasmic core domain spr0100 PF00005 ABC transporter spr0100 PF02687 FtsX-like permease family spr0101 PF00497 Bacterial extracellular solute-binding proteins, family 3 spr0102 PF00764 Arginosuccinate synthase spr0103 PF14698 Argininosuccinate lyase C-terminal spr0103 PF00206 Lyase spr0104 PF01381 Helix-turn-helix spr0106 PF00664 ABC transporter transmembrane region spr0106 PF00005 ABC transporter spr0106 PF03412 Peptidase C39 family spr0123 PF00293 NUDIX domain spr0124 PF13932 GidA associated domain spr0124 PF01134 Glucose inhibited division protein A spr0125 PF00753 Metallo-beta-lactamase superfamily spr0125 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain spr0125 PF17770 Ribonuclease J C-terminal domain spr0126 PF07288 Protein of unknown function (DUF1447) spr0129 PF00814 Glycoprotease family spr0131 PF00814 Glycoprotease family spr0135 PF00534 Glycosyl transferases group 1 spr0135 PF13439 Glycosyltransferase Family 4 spr0136 PF00535 Glycosyl transferase family 2 spr0137 PF00664 ABC transporter transmembrane region spr0137 PF00005 ABC transporter spr0137 PF03412 Peptidase C39 family spr0139 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain spr0139 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain spr0140 PF01381 Helix-turn-helix spr0146 PF00497 Bacterial extracellular solute-binding proteins, family 3 spr0147 PF03180 NLPA lipoprotein spr0148 PF01546 Peptidase family M20/M25/M40 spr0148 PF07687 Peptidase dimerisation domain spr0149 PF00005 ABC transporter spr0149 PF09383 NIL domain spr0150 PF00528 Binding-protein-dependent transport system inner membrane component spr0153 PF06580 Histidine kinase spr0153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0153 PF00672 HAMP domain spr0153 PF02743 Cache domain spr0154 PF00072 Response regulator receiver domain spr0154 PF12833 Helix-turn-helix domain spr0156 PF07972 NrdI Flavodoxin like spr0159 PF04397 LytTr DNA-binding domain spr0160 PF08676 MutL C terminal dimerisation domain spr0160 PF01119 DNA mismatch repair protein, C-terminal domain spr0161 PF00885 6,7-dimethyl-8-ribityllumazine synthase spr0162 PF00925 GTP cyclohydrolase II spr0162 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase spr0163 PF00677 Lumazine binding domain spr0164 PF01872 RibD C-terminal domain spr0164 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region spr0165 PF07499 RuvA, C-terminal domain spr0165 PF01330 RuvA N terminal domain spr0166 PF03352 Methyladenine glycosylase spr0171 PF00005 ABC transporter spr0171 PF17755 UvrA DNA-binding domain spr0171 PF17760 UvrA interaction domain spr0172 PF00557 Metallopeptidase family M24 spr0172 PF01321 Creatinase/Prolidase N-terminal domain spr0173 PF03960 ArsC family spr0175 PF06135 IreB regulatory phosphoprotein spr0176 PF03652 Holliday junction resolvase spr0177 PF06949 Protein of unknown function (DUF1292) spr0178 PF02875 Mur ligase family, glutamate ligase domain spr0178 PF08245 Mur ligase middle domain spr0180 PF13091 PLD-like domain spr0183 PF13597 Anaerobic ribonucleoside-triphosphate reductase spr0183 PF03477 ATP cone domain spr0187 PF00338 Ribosomal protein S10p/S20e spr0188 PF00297 Ribosomal protein L3 spr0189 PF00573 Ribosomal protein L4/L1 family spr0190 PF00276 Ribosomal protein L23 spr0191 PF00181 Ribosomal Proteins L2, RNA binding domain spr0191 PF03947 Ribosomal Proteins L2, C-terminal domain spr0192 PF00203 Ribosomal protein S19 spr0194 PF00237 Ribosomal protein L22p/L17e spr0195 PF07650 KH domain spr0195 PF00189 Ribosomal protein S3, C-terminal domain spr0196 PF00252 Ribosomal protein L16p/L10e spr0197 PF00831 Ribosomal L29 protein spr0198 PF00366 Ribosomal protein S17 spr0199 PF00238 Ribosomal protein L14p/L23e spr0200 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 spr0200 PF00467 KOW motif spr0201 PF00281 Ribosomal protein L5 spr0201 PF00673 ribosomal L5P family C-terminus spr0202 PF00253 Ribosomal protein S14p/S29e spr0203 PF00410 Ribosomal protein S8 spr0204 PF00347 Ribosomal protein L6 spr0205 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast spr0206 PF00333 Ribosomal protein S5, N-terminal domain spr0206 PF03719 Ribosomal protein S5, C-terminal domain spr0207 PF00327 Ribosomal protein L30p/L7e spr0208 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A spr0209 PF00344 SecY translocase spr0211 PF01176 Translation initiation factor 1A / IF-1 spr0212 PF00444 Ribosomal protein L36 spr0213 PF00416 Ribosomal protein S13/S18 spr0214 PF00411 Ribosomal protein S11 spr0215 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain spr0215 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain spr0215 PF01000 RNA polymerase Rpb3/RpoA insert domain spr0216 PF01196 Ribosomal protein L17 spr0218 PF05167 Uncharacterised ACR (DUF711) spr0220 PF00528 Binding-protein-dependent transport system inner membrane component spr0221 PF00528 Binding-protein-dependent transport system inner membrane component spr0222 PF08402 TOBE domain spr0222 PF00005 ABC transporter spr0226 PF04055 Radical SAM superfamily spr0227 PF00455 DeoR C terminal sensor domain spr0227 PF08220 DeoR-like helix-turn-helix domain spr0228 PF13936 Helix-turn-helix domain spr0228 PF04198 Putative sugar-binding domain spr0229 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit spr0230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr0231 PF02378 Phosphotransferase system, EIIC spr0232 PF02901 Pyruvate formate lyase-like spr0232 PF01228 Glycine radical spr0233 PF00923 Transaldolase/Fructose-6-phosphate aldolase spr0234 PF00465 Iron-containing alcohol dehydrogenase spr0235 PF08264 Anticodon-binding domain of tRNA spr0235 PF13603 Leucyl-tRNA synthetase, Domain 2 spr0235 PF00133 tRNA synthetases class I (I, L, M and V) spr0235 PF09334 tRNA synthetases class I (M) spr0238 PF05491 RuvB C-terminal winged helix domain spr0238 PF05496 Holliday junction DNA helicase RuvB P-loop domain spr0238 PF17864 RuvB AAA lid domain spr0240 PF01255 Putative undecaprenyl diphosphate synthase spr0242 PF02163 Peptidase family M50 spr0243 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) spr0243 PF03129 Anticodon binding domain spr0243 PF04073 Aminoacyl-tRNA editing domain spr0244 PF00232 Glycosyl hydrolase family 1 spr0245 PF01380 SIS domain spr0247 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) spr0247 PF00128 Alpha amylase, catalytic domain spr0247 PF03714 Bacterial pullanase-associated domain spr0248 PF00164 Ribosomal protein S12/S23 spr0249 PF00177 Ribosomal protein S7p/S5e spr0250 PF14492 Elongation Factor G, domain II spr0250 PF00679 Elongation factor G C-terminus spr0250 PF00009 Elongation factor Tu GTP binding domain spr0250 PF03764 Elongation factor G, domain IV spr0250 PF03144 Elongation factor Tu domain 2 spr0251 PF14480 DNA polymerase III polC-type N-terminus I spr0251 PF07733 Bacterial DNA polymerase III alpha NTPase domain spr0251 PF17657 Bacterial DNA polymerase III alpha subunit finger domain spr0251 PF11490 DNA polymerase III polC-type N-terminus II spr0251 PF02811 PHP domain spr0251 PF00929 Exonuclease spr0254 PF02073 Thermophilic metalloprotease (M29) spr0255 PF04226 Transglycosylase associated protein spr0256 PF00849 RNA pseudouridylate synthase spr0256 PF01479 S4 domain spr0258 PF03051 Peptidase C1-like family spr0259 PF03613 PTS system mannose/fructose/sorbose family IID component spr0260 PF03609 PTS system sorbose-specific iic component spr0261 PF03610 PTS system fructose IIA component spr0261 PF03830 PTS system sorbose subfamily IIB component spr0262 PF08240 Alcohol dehydrogenase GroES-like domain spr0262 PF00107 Zinc-binding dehydrogenase spr0264 PF00860 Permease family spr0266 PF00809 Pterin binding enzyme spr0267 PF02875 Mur ligase family, glutamate ligase domain spr0267 PF08245 Mur ligase middle domain spr0268 PF01227 GTP cyclohydrolase I spr0269 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) spr0269 PF02152 Dihydroneopterin aldolase spr0271 PF00572 Ribosomal protein L13 spr0272 PF00380 Ribosomal protein S9/S16 spr0276 PF00232 Glycosyl hydrolase family 1 spr0277 PF04193 PQ loop repeat spr0278 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr0279 PF00874 PRD domain spr0279 PF05043 Mga helix-turn-helix domain spr0279 PF08279 HTH domain spr0279 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 spr0280 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit spr0282 PF02378 Phosphotransferase system, EIIC spr0284 PF17137 Domain of unknown function (DUF5110) spr0284 PF16338 Domain of unknown function (DUF4968) spr0284 PF01055 Glycosyl hydrolases family 31 spr0284 PF13802 Galactose mutarotase-like spr0285 PF00255 Glutathione peroxidase spr0286 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain spr0286 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain spr0286 PF02278 Polysaccharide lyase family 8, super-sandwich domain spr0292 PF07470 Glycosyl Hydrolase Family 88 spr0293 PF03830 PTS system sorbose subfamily IIB component spr0294 PF03609 PTS system sorbose-specific iic component spr0295 PF03613 PTS system mannose/fructose/sorbose family IID component spr0298 PF00356 Bacterial regulatory proteins, lacI family spr0302 PF01795 MraW methylase family spr0304 PF00905 Penicillin binding protein transpeptidase domain spr0304 PF03717 Penicillin-binding Protein dimerisation domain spr0304 PF03793 PASTA domain spr0305 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 spr0305 PF00953 Glycosyl transferase family 4 spr0307 PF10431 C-terminal, D2-small domain, of ClpB protein spr0307 PF17871 AAA lid domain spr0307 PF07724 AAA domain (Cdc48 subfamily) spr0307 PF00004 ATPase family associated with various cellular activities (AAA) spr0308 PF02664 S-Ribosylhomocysteinase (LuxS) spr0309 PF08903 Domain of unknown function (DUF1846) spr0310 PF00128 Alpha amylase, catalytic domain spr0310 PF16657 Maltogenic Amylase, C-terminal domain spr0311 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle spr0318 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain spr0318 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain spr0318 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain spr0319 PF03275 UDP-galactopyranose mutase spr0320 PF00483 Nucleotidyl transferase spr0321 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase spr0322 PF16363 GDP-mannose 4,6 dehydratase spr0323 PF04321 RmlD substrate binding domain spr0325 PF13007 Transposase C of IS166 homeodomain spr0325 PF13817 IS66 C-terminal element spr0325 PF13005 zinc-finger binding domain of transposase IS66 spr0325 PF03050 Transposase IS66 family spr0327 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle spr0328 PF00754 F5/8 type C domain spr0328 PF18080 Galactose mutarotase-like fold domain spr0328 PF17974 Galactose-binding domain-like spr0328 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal spr0328 PF17451 Glycosyl hydrolase 101 beta sandwich domain spr0328 PF12905 Endo-alpha-N-acetylgalactosaminidase spr0328 PF04650 YSIRK type signal peptide spr0329 PF00912 Transglycosylase spr0329 PF00905 Penicillin binding protein transpeptidase domain spr0330 PF03838 Recombination protein U spr0331 PF06908 YspA SLOG family spr0332 PF05103 DivIVA protein spr0333 PF02926 THUMP domain spr0333 PF01170 Putative RNA methylase family UPF0020 spr0334 PF18708 MapZ extracellular C-terminal domain 2 spr0334 PF18041 MapZ extracellular domain 1 spr0335 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain spr0335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase spr0336 PF00486 Transcriptional regulatory protein, C terminal spr0336 PF00072 Response regulator receiver domain spr0338 PF08544 GHMP kinases C terminal spr0338 PF10509 Galactokinase galactose-binding signature spr0338 PF00288 GHMP kinases N terminal domain spr0340 PF00288 GHMP kinases N terminal domain spr0340 PF08544 GHMP kinases C terminal spr0341 PF01070 FMN-dependent dehydrogenase spr0343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0343 PF07730 Histidine kinase spr0344 PF00196 Bacterial regulatory proteins, luxR family spr0344 PF00072 Response regulator receiver domain spr0356 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr0356 PF02378 Phosphotransferase system, EIIC spr0357 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 spr0357 PF08279 HTH domain spr0357 PF05043 Mga helix-turn-helix domain spr0358 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 spr0359 PF01232 Mannitol dehydrogenase Rossmann domain spr0359 PF08125 Mannitol dehydrogenase C-terminal domain spr0362 PF05697 Bacterial trigger factor protein (TF) spr0362 PF05698 Bacterial trigger factor protein (TF) C-terminus spr0362 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase spr0363 PF13538 UvrD-like helicase C-terminal domain spr0363 PF14490 Helix-hairpin-helix containing domain spr0363 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain spr0364 PF10502 Signal peptidase, peptidase S26 spr0365 PF01351 Ribonuclease HII spr0365 PF11858 Domain of unknown function (DUF3378) spr0368 PF01713 Smr domain spr0368 PF00488 MutS domain V spr0369 PF01235 Sodium:alanine symporter family spr0372 PF02403 Seryl-tRNA synthetase N-terminal domain spr0372 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) spr0374 PF00696 Amino acid kinase family spr0374 PF13840 ACT domain spr0375 PF00378 Enoyl-CoA hydratase/isomerase spr0376 PF01047 MarR family spr0377 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III spr0377 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal spr0378 PF00550 Phosphopantetheine attachment site spr0379 PF03060 Nitronate monooxygenase spr0380 PF00698 Acyl transferase domain spr0382 PF00109 Beta-ketoacyl synthase, N-terminal domain spr0382 PF02801 Beta-ketoacyl synthase, C-terminal domain spr0383 PF00364 Biotin-requiring enzyme spr0384 PF07977 FabA-like domain spr0385 PF02785 Biotin carboxylase C-terminal domain spr0385 PF00289 Biotin carboxylase, N-terminal domain spr0385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain spr0386 PF01039 Carboxyl transferase domain spr0387 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit spr0390 PF01029 NusB family spr0391 PF03780 Asp23 family, cell envelope-related function spr0392 PF01132 Elongation factor P (EF-P) OB domain spr0392 PF09285 Elongation factor P, C-terminal spr0392 PF08207 Elongation factor P (EF-P) KOW-like domain spr0393 PF02934 GatB/GatE catalytic domain spr0393 PF02637 GatB domain spr0394 PF01425 Amidase spr0395 PF02686 Glu-tRNAGln amidotransferase C subunit spr0396 PF03144 Elongation factor Tu domain 2 spr0396 PF16658 Class II release factor RF3, C-terminal domain spr0396 PF00009 Elongation factor Tu GTP binding domain spr0397 PF01501 Glycosyl transferase family 8 spr0398 PF00830 Ribosomal L28 family spr0399 PF03780 Asp23 family, cell envelope-related function spr0400 PF13684 Dihydroxyacetone kinase family spr0400 PF02734 DAK2 domain spr0401 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain spr0401 PF00205 Thiamine pyrophosphate enzyme, central domain spr0401 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain spr0402 PF10369 Small subunit of acetolactate synthase spr0402 PF01842 ACT domain spr0403 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain spr0403 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain spr0406 PF00291 Pyridoxal-phosphate dependent enzyme spr0406 PF00585 C-terminal regulatory domain of Threonine dehydratase spr0408 PF00005 ABC transporter spr0409 PF00528 Binding-protein-dependent transport system inner membrane component spr0413 PF02673 Bacitracin resistance protein BacA spr0414 PF11799 impB/mucB/samB family C-terminal domain spr0414 PF00817 impB/mucB/samB family spr0414 PF11798 IMS family HHH motif spr0415 PF01228 Glycine radical spr0415 PF02901 Pyruvate formate lyase-like spr0420 PF00480 ROK family spr0421 PF02378 Phosphotransferase system, EIIC spr0423 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit spr0424 PF00232 Glycosyl hydrolase family 1 spr0425 PF02378 Phosphotransferase system, EIIC spr0425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr0426 PF02386 Cation transport protein spr0427 PF02254 TrkA-N domain spr0427 PF02080 TrkA-C domain spr0429 PF07155 ECF-type riboflavin transporter, S component spr0430 PF12558 ATP-binding cassette cobalt transporter spr0430 PF00005 ABC transporter spr0432 PF00588 SpoU rRNA Methylase family spr0433 PF12822 ECF transporter, substrate-specific component spr0434 PF01569 PAP2 superfamily spr0436 PF00583 Acetyltransferase (GNAT) family spr0437 PF05066 HB1, ASXL, restriction endonuclease HTH domain spr0438 PF00117 Glutamine amidotransferase class-I spr0438 PF06418 CTP synthase N-terminus spr0439 PF02690 Na+/Pi-cotransporter spr0440 PF02973 Sialidase, N-terminal domain spr0440 PF04650 YSIRK type signal peptide spr0440 PF13088 BNR repeat-like domain spr0441 PF00162 Phosphoglycerate kinase spr0442 PF06081 Aromatic acid exporter family member 1 spr0443 PF13411 MerR HTH family regulatory protein spr0444 PF00120 Glutamine synthetase, catalytic domain spr0444 PF03951 Glutamine synthetase, beta-Grasp domain spr0445 PF01420 Type I restriction modification DNA specificity domain spr0447 PF00589 Phage integrase family spr0447 PF02899 Phage integrase, N-terminal SAM-like domain spr0448 PF01420 Type I restriction modification DNA specificity domain spr0449 PF12161 HsdM N-terminal domain spr0449 PF02384 N-6 DNA Methylase spr0450 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) spr0450 PF00271 Helicase conserved C-terminal domain spr0450 PF08463 EcoEI R protein C-terminal spr0450 PF04851 Type III restriction enzyme, res subunit spr0453 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding spr0453 PF01628 HrcA protein C terminal domain spr0454 PF01025 GrpE spr0455 PF00012 Hsp70 protein spr0456 PF00226 DnaJ domain spr0456 PF00684 DnaJ central domain spr0456 PF01556 DnaJ C terminal domain spr0458 PF01230 HIT domain spr0459 PF00005 ABC transporter spr0464 PF17203 Single cache domain 3 spr0464 PF00989 PAS fold spr0464 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain spr0464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0474 PF02517 CPBP intramembrane metalloprotease spr0476 PF02390 Putative methyltransferase spr0477 PF17384 RimP C-terminal SH3 domain spr0477 PF02576 RimP N-terminal domain spr0478 PF13184 NusA-like KH domain spr0478 PF08529 NusA N-terminal domain spr0478 PF00575 S1 RNA binding domain spr0479 PF04296 Protein of unknown function (DUF448) spr0480 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family spr0481 PF00009 Elongation factor Tu GTP binding domain spr0481 PF04760 Translation initiation factor IF-2, N-terminal region spr0481 PF11987 Translation-initiation factor 2 spr0482 PF02033 Ribosome-binding factor A spr0490 PF13673 Acetyltransferase (GNAT) domain spr0490 PF00958 GMP synthase C terminal domain spr0490 PF03352 Methyladenine glycosylase spr0490 PF00117 Glutamine amidotransferase class-I spr0490 PF13302 Acetyltransferase (GNAT) domain spr0492 PF08264 Anticodon-binding domain of tRNA spr0492 PF10458 Valyl tRNA synthetase tRNA binding arm spr0492 PF00133 tRNA synthetases class I (I, L, M and V) spr0494 PF02661 Fic/DOC family spr0494 PF17841 BID domain of Bartonella effector protein (Bep) spr0504 PF03123 CAT RNA binding domain spr0504 PF00874 PRD domain spr0505 PF02378 Phosphotransferase system, EIIC spr0505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 spr0505 PF00367 phosphotransferase system, EIIB spr0506 PF00232 Glycosyl hydrolase family 1 spr0507 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain spr0507 PF01409 tRNA synthetases class II core domain (F) spr0508 PF00583 Acetyltransferase (GNAT) family spr0509 PF03147 Ferredoxin-fold anticodon binding domain spr0509 PF03484 tRNA synthetase B5 domain spr0509 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain spr0509 PF03483 B3/4 domain spr0509 PF01588 Putative tRNA binding domain spr0513 PF01381 Helix-turn-helix spr0514 PF08267 Cobalamin-independent synthase, N-terminal domain spr0514 PF01717 Cobalamin-independent synthase, Catalytic domain spr0515 PF02219 Methylenetetrahydrofolate reductase spr0516 PF00575 S1 RNA binding domain spr0516 PF03725 3' exoribonuclease family, domain 2 spr0516 PF01138 3' exoribonuclease family, domain 1 spr0516 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain spr0516 PF00013 KH domain spr0517 PF00132 Bacterial transferase hexapeptide (six repeats) spr0517 PF06426 Serine acetyltransferase, N-terminal spr0519 PF09190 DALR domain spr0519 PF01406 tRNA synthetases class I (C) catalytic domain spr0520 PF00636 Ribonuclease III domain spr0521 PF13556 PucR C-terminal helix-turn-helix domain spr0524 PF12704 MacB-like periplasmic core domain spr0524 PF02687 FtsX-like permease family spr0525 PF00005 ABC transporter spr0526 PF02687 FtsX-like permease family spr0526 PF12704 MacB-like periplasmic core domain spr0528 PF00486 Transcriptional regulatory protein, C terminal spr0528 PF00072 Response regulator receiver domain spr0529 PF00672 HAMP domain spr0529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0529 PF00512 His Kinase A (phospho-acceptor) domain spr0530 PF01116 Fructose-bisphosphate aldolase class-II spr0531 PF00175 Oxidoreductase NAD-binding domain spr0531 PF00111 2Fe-2S iron-sulfur cluster binding domain spr0531 PF00970 Oxidoreductase FAD-binding domain spr0532 PF00528 Binding-protein-dependent transport system inner membrane component spr0533 PF00528 Binding-protein-dependent transport system inner membrane component spr0534 PF00497 Bacterial extracellular solute-binding proteins, family 3 spr0537 PF02272 DHHA1 domain spr0537 PF01368 DHH family spr0537 PF17768 RecJ OB domain spr0537 PF10141 Single-strand DNA-specific exonuclease, C terminal domain spr0538 PF17770 Ribonuclease J C-terminal domain spr0538 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain spr0538 PF00753 Metallo-beta-lactamase superfamily spr0539 PF00756 Putative esterase spr0543 PF02151 UvrB/uvrC motif spr0543 PF08459 UvrC Helix-hairpin-helix N-terminal spr0543 PF01541 GIY-YIG catalytic domain spr0545 PF00497 Bacterial extracellular solute-binding proteins, family 3 spr0546 PF00881 Nitroreductase family spr0547 PF01546 Peptidase family M20/M25/M40 spr0548 PF03167 Uracil DNA glycosylase superfamily spr0551 PF05525 Branched-chain amino acid transport protein spr0552 PF05343 M42 glutamyl aminopeptidase spr0555 PF03946 Ribosomal protein L11, N-terminal domain spr0555 PF00298 Ribosomal protein L11, RNA binding domain spr0556 PF00687 Ribosomal protein L1p/L10e family spr0557 PF00005 ABC transporter spr0561 PF00082 Subtilase family spr0564 PF03611 PTS system sugar-specific permease component spr0565 PF16355 Domain of unknown function (DUF4982) spr0565 PF02836 Glycosyl hydrolases family 2, TIM barrel domain spr0565 PF00703 Glycosyl hydrolases family 2 spr0565 PF02837 Glycosyl hydrolases family 2, sugar binding domain spr0565 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 spr0569 PF16199 Radical_SAM C-terminal domain spr0569 PF04055 Radical SAM superfamily spr0570 PF04055 Radical SAM superfamily spr0570 PF16199 Radical_SAM C-terminal domain spr0571 PF06962 Putative rRNA methylase spr0573 PF00999 Sodium/hydrogen exchanger family spr0575 PF02683 Cytochrome C biogenesis protein transmembrane region spr0576 PF08534 Redoxin spr0577 PF01641 SelR domain spr0577 PF01625 Peptide methionine sulfoxide reductase spr0578 PF12833 Helix-turn-helix domain spr0578 PF00072 Response regulator receiver domain spr0579 PF02743 Cache domain spr0579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0579 PF06580 Histidine kinase spr0579 PF00672 HAMP domain spr0580 PF04260 Protein of unknown function (DUF436) spr0581 PF00746 LPXTG cell wall anchor motif spr0581 PF07501 G5 domain spr0581 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region spr0581 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region spr0582 PF00425 chorismate binding enzyme spr0582 PF04715 Anthranilate synthase component I, N terminal region spr0584 PF00480 ROK family spr0585 PF00303 Thymidylate synthase spr0589 PF13167 GTP-binding GTPase N-terminal spr0589 PF16360 GTP-binding GTPase Middle Region spr0589 PF01926 50S ribosome-binding GTPase spr0590 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain spr0590 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain spr0591 PF12706 Beta-lactamase superfamily domain spr0591 PF00753 Metallo-beta-lactamase superfamily spr0592 PF00106 short chain dehydrogenase spr0593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family spr0593 PF03466 LysR substrate binding domain spr0595 PF00581 Rhodanese-like domain spr0597 PF01479 S4 domain spr0597 PF00849 RNA pseudouridylate synthase spr0598 PF00009 Elongation factor Tu GTP binding domain spr0598 PF00679 Elongation factor G C-terminus spr0598 PF03144 Elongation factor Tu domain 2 spr0598 PF14492 Elongation Factor G, domain II spr0602 PF00005 ABC transporter spr0603 PF08245 Mur ligase middle domain spr0603 PF02875 Mur ligase family, glutamate ligase domain spr0604 PF04101 Glycosyltransferase family 28 C-terminal domain spr0604 PF03033 Glycosyltransferase family 28 N-terminal domain spr0605 PF08478 POTRA domain, FtsQ-type spr0613 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family spr0614 PF00156 Phosphoribosyl transferase domain spr0619 PF00005 ABC transporter spr0622 PF00005 ABC transporter spr0623 PF00528 Binding-protein-dependent transport system inner membrane component spr0624 PF00528 Binding-protein-dependent transport system inner membrane component spr0626 PF01336 OB-fold nucleic acid binding domain spr0626 PF00152 tRNA synthetases class II (D, K and N) spr0627 PF01070 FMN-dependent dehydrogenase spr0629 PF02110 Hydroxyethylthiazole kinase family spr0630 PF02581 Thiamine monophosphate synthase spr0632 PF00005 ABC transporter spr0634 PF03070 TENA/THI-4/PQQC family spr0636 PF02110 Hydroxyethylthiazole kinase family spr0637 PF02581 Thiamine monophosphate synthase spr0638 PF08543 Phosphomethylpyrimidine kinase spr0639 PF03965 Penicillinase repressor spr0641 PF00403 Heavy-metal-associated domain spr0642 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain spr0642 PF00205 Thiamine pyrophosphate enzyme, central domain spr0642 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain spr0644 PF13358 DDE superfamily endonuclease spr0647 PF01238 Phosphomannose isomerase type I spr0648 PF00209 Sodium:neurotransmitter symporter family spr0649 PF13411 MerR HTH family regulatory protein spr0650 PF13344 Haloacid dehalogenase-like hydrolase spr0650 PF00293 NUDIX domain spr0652 PF02645 Uncharacterised protein, DegV family COG1307 spr0654 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region spr0656 PF00574 Clp protease spr0657 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) spr0659 PF13458 Periplasmic binding protein spr0660 PF02653 Branched-chain amino acid transport system / permease component spr0661 PF02653 Branched-chain amino acid transport system / permease component spr0661 PF11862 Domain of unknown function (DUF3382) spr0662 PF12399 Branched-chain amino acid ATP-binding cassette transporter spr0662 PF00005 ABC transporter spr0663 PF00005 ABC transporter spr0664 PF01743 Poly A polymerase head domain spr0664 PF00571 CBS domain spr0665 PF00472 RF-1 domain spr0665 PF03462 PCRF domain spr0666 PF00005 ABC transporter spr0667 PF02687 FtsX-like permease family spr0667 PF18075 FtsX extracellular domain spr0668 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 spr0668 PF00367 phosphotransferase system, EIIB spr0668 PF02378 Phosphotransferase system, EIIC spr0669 PF03372 Endonuclease/Exonuclease/phosphatase family spr0670 PF00271 Helicase conserved C-terminal domain spr0670 PF00270 DEAD/DEAH box helicase spr0671 PF00438 S-adenosylmethionine synthetase, N-terminal domain spr0671 PF02772 S-adenosylmethionine synthetase, central domain spr0671 PF02773 S-adenosylmethionine synthetase, C-terminal domain spr0672 PF01180 Dihydroorotate dehydrogenase spr0674 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain spr0674 PF02777 Iron/manganese superoxide dismutases, C-terminal domain spr0675 PF06265 Protein of unknown function (DUF1027) spr0676 PF04055 Radical SAM superfamily spr0678 PF12848 ABC transporter spr0678 PF00005 ABC transporter spr0679 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD spr0682 PF00886 Ribosomal protein S16 spr0686 PF05239 PRC-barrel domain spr0686 PF01782 RimM N-terminal domain spr0687 PF01746 tRNA (Guanine-1)-methyltransferase spr0688 PF03477 ATP cone domain spr0688 PF13597 Anaerobic ribonucleoside-triphosphate reductase spr0690 PF02229 Transcriptional Coactivator p15 (PC4) spr0691 PF02632 BioY family spr0692 PF07992 Pyridine nucleotide-disulphide oxidoreductase spr0692 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain spr0693 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion spr0694 PF00005 ABC transporter spr0695 PF02687 FtsX-like permease family spr0695 PF12704 MacB-like periplasmic core domain spr0696 PF09334 tRNA synthetases class I (M) spr0696 PF01588 Putative tRNA binding domain spr0699 PF00248 Aldo/keto reductase family spr0706 PF01433 Peptidase family M1 domain spr0706 PF11838 ERAP1-like C-terminal domain spr0707 PF00486 Transcriptional regulatory protein, C terminal spr0707 PF00072 Response regulator receiver domain spr0708 PF00512 His Kinase A (phospho-acceptor) domain spr0708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0711 PF17657 Bacterial DNA polymerase III alpha subunit finger domain spr0711 PF00929 Exonuclease spr0711 PF11490 DNA polymerase III polC-type N-terminus II spr0711 PF02811 PHP domain spr0711 PF14579 Helix-hairpin-helix motif spr0711 PF07733 Bacterial DNA polymerase III alpha NTPase domain spr0712 PF01098 Cell cycle protein spr0713 PF01965 DJ-1/PfpI family spr0715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0715 PF01751 Toprim domain spr0715 PF00986 DNA gyrase B subunit, carboxyl terminus spr0715 PF00204 DNA gyrase B spr0716 PF06160 Septation ring formation regulator, EzrA spr0718 PF13358 DDE superfamily endonuclease spr0721 PF00293 NUDIX domain spr0725 PF10431 C-terminal, D2-small domain, of ClpB protein spr0725 PF00004 ATPase family associated with various cellular activities (AAA) spr0725 PF17871 AAA lid domain spr0725 PF07724 AAA domain (Cdc48 subfamily) spr0726 PF08796 Protein of unknown function (DUF1797) spr0727 PF00528 Binding-protein-dependent transport system inner membrane component spr0728 PF00005 ABC transporter spr0729 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain spr0729 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain spr0730 PF01256 Carbohydrate kinase spr0731 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) spr0732 PF01676 Metalloenzyme superfamily spr0734 PF01048 Phosphorylase superfamily spr0737 PF01289 Thiol-activated cytolysin spr0737 PF17440 Thiol-activated cytolysin beta sandwich domain spr0738 PF01048 Phosphorylase superfamily spr0740 PF01649 Ribosomal protein S20 spr0741 PF00485 Phosphoribulokinase / Uridine kinase family spr0743 PF05175 Methyltransferase small domain spr0744 PF00591 Glycosyl transferase family, a/b domain spr0744 PF02885 Glycosyl transferase family, helical bundle domain spr0744 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain spr0745 PF01791 DeoC/LacD family aldolase spr0746 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region spr0747 PF02608 ABC transporter substrate-binding protein PnrA-like spr0748 PF00005 ABC transporter spr0749 PF02653 Branched-chain amino acid transport system / permease component spr0750 PF02653 Branched-chain amino acid transport system / permease component spr0755 PF02660 Glycerol-3-phosphate acyltransferase spr0756 PF00986 DNA gyrase B subunit, carboxyl terminus spr0756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr0756 PF01751 Toprim domain spr0756 PF00204 DNA gyrase B spr0757 PF00521 DNA gyrase/topoisomerase IV, subunit A spr0757 PF03989 DNA gyrase C-terminal domain, beta-propeller spr0758 PF01063 Amino-transferase class IV spr0762 PF01470 Pyroglutamyl peptidase spr0764 PF00575 S1 RNA binding domain spr0768 PF13185 GAF domain spr0769 PF12169 DNA polymerase III subunits gamma and tau domain III spr0771 PF00005 ABC transporter spr0772 PF01458 Uncharacterized protein family (UPF0051) spr0773 PF00266 Aminotransferase class-V spr0774 PF01592 NifU-like N terminal domain spr0775 PF01458 Uncharacterized protein family (UPF0051) spr0776 PF00768 D-alanyl-D-alanine carboxypeptidase spr0776 PF07943 Penicillin-binding protein 5, C-terminal domain spr0777 PF01594 AI-2E family transporter spr0778 PF00455 DeoR C terminal sensor domain spr0778 PF08220 DeoR-like helix-turn-helix domain spr0779 PF00294 pfkB family carbohydrate kinase spr0780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr0780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 spr0781 PF17854 FtsK alpha domain spr0781 PF09397 Ftsk gamma domain spr0781 PF01580 FtsK/SpoIIIE family spr0783 PF00266 Aminotransferase class-V spr0784 PF02568 Thiamine biosynthesis protein (ThiI) spr0784 PF02926 THUMP domain spr0790 PF02384 N-6 DNA Methylase spr0792 PF08463 EcoEI R protein C-terminal spr0792 PF00271 Helicase conserved C-terminal domain spr0792 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) spr0792 PF04851 Type III restriction enzyme, res subunit spr0793 PF02863 Arginine repressor, C-terminal domain spr0793 PF01316 Arginine repressor, DNA binding domain spr0794 PF02129 X-Pro dipeptidyl-peptidase (S15 family) spr0794 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain spr0794 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal spr0795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain spr0795 PF01336 OB-fold nucleic acid binding domain spr0795 PF07733 Bacterial DNA polymerase III alpha NTPase domain spr0795 PF02811 PHP domain spr0795 PF14579 Helix-hairpin-helix motif spr0796 PF00365 Phosphofructokinase spr0797 PF02887 Pyruvate kinase, alpha/beta domain spr0797 PF00224 Pyruvate kinase, barrel domain spr0804 PF09323 Domain of unknown function (DUF1980) spr0805 PF03773 Predicted permease spr0808 PF00575 S1 RNA binding domain spr0808 PF16921 Tex protein YqgF-like domain spr0808 PF09371 Tex-like protein N-terminal domain spr0808 PF17674 HHH domain spr0809 PF10263 SprT-like family spr0809 PF17283 SprT-like zinc ribbon domain spr0812 PF00005 ABC transporter spr0813 PF02687 FtsX-like permease family spr0815 PF13936 Helix-turn-helix domain spr0816 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain spr0816 PF01276 Orn/Lys/Arg decarboxylase, major domain spr0819 PF17284 Spermidine synthase tetramerisation domain spr0820 PF16653 Saccharopine dehydrogenase C-terminal domain spr0820 PF03435 Saccharopine dehydrogenase NADP binding domain spr0821 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain spr0822 PF04371 Porphyromonas-type peptidyl-arginine deiminase spr0823 PF00795 Carbon-nitrogen hydrolase spr0828 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family spr0828 PF03466 LysR substrate binding domain spr0829 PF01252 Signal peptidase (SPase) II spr0830 PF00849 RNA pseudouridylate synthase spr0830 PF01479 S4 domain spr0832 PF00696 Amino acid kinase family spr0832 PF01472 PUA domain spr0833 PF00171 Aldehyde dehydrogenase family spr0834 PF03807 NADP oxidoreductase coenzyme F420-dependent spr0834 PF14748 Pyrroline-5-carboxylate reductase dimerisation spr0835 PF02223 Thymidylate kinase spr0836 PF09115 DNA polymerase III, delta subunit, C terminal spr0837 PF06156 Initiation control protein YabA spr0838 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases spr0844 PF01134 Glucose inhibited division protein A spr0845 PF00696 Amino acid kinase family spr0846 PF01765 Ribosome recycling factor spr0847 PF13509 S1 domain spr0847 PF17783 CvfB-like winged helix domain spr0848 PF06855 YozE SAM-like fold spr0849 PF02562 PhoH-like protein spr0855 PF13302 Acetyltransferase (GNAT) domain spr0856 PF10531 SLBB domain spr0857 PF03772 Competence protein spr0857 PF13567 Domain of unknown function (DUF4131) spr0857 PF00753 Metallo-beta-lactamase superfamily spr0861 PF00707 Translation initiation factor IF-3, C-terminal domain spr0861 PF05198 Translation initiation factor IF-3, N-terminal domain spr0862 PF01632 Ribosomal protein L35 spr0863 PF00453 Ribosomal protein L20 spr0864 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily spr0865 PF00175 Oxidoreductase NAD-binding domain spr0865 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B spr0865 PF00970 Oxidoreductase FAD-binding domain spr0866 PF01180 Dihydroorotate dehydrogenase spr0867 PF17890 Peptidoglycan hydrolase LytB WW-like domain spr0867 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain spr0867 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase spr0867 PF01473 Putative cell wall binding repeat spr0868 PF05670 NFACT protein RNA binding domain spr0869 PF02130 Uncharacterized protein family UPF0054 spr0870 PF01219 Prokaryotic diacylglycerol kinase spr0871 PF01926 50S ribosome-binding GTPase spr0871 PF07650 KH domain spr0872 PF06827 Zinc finger found in FPG and IleRS spr0872 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain spr0872 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain spr0873 PF01121 Dephospho-CoA kinase spr0875 PF07690 Major Facilitator Superfamily spr0875 PF00083 Sugar (and other) transporter spr0876 PF00471 Ribosomal protein L33 spr0878 PF17876 Cold shock domain spr0878 PF00773 RNB domain spr0878 PF00575 S1 RNA binding domain spr0878 PF08206 Ribonuclease B OB domain spr0879 PF01668 SmpB protein spr0880 PF09313 Domain of unknown function (DUF1971) spr0880 PF03848 Tellurite resistance protein TehB spr0882 PF08439 Oligopeptidase F spr0882 PF01432 Peptidase family M3 spr0883 PF01596 O-methyltransferase spr0884 PF13145 PPIC-type PPIASE domain spr0888 PF04073 Aminoacyl-tRNA editing domain spr0891 PF00483 Nucleotidyl transferase spr0891 PF14602 Hexapeptide repeat of succinyl-transferase spr0891 PF00132 Bacterial transferase hexapeptide (six repeats) spr0892 PF00293 NUDIX domain spr0894 PF01048 Phosphorylase superfamily spr0895 PF08279 HTH domain spr0895 PF04394 Protein of unknown function, DUF536 spr0896 PF14579 Helix-hairpin-helix motif spr0896 PF00929 Exonuclease spr0896 PF07733 Bacterial DNA polymerase III alpha NTPase domain spr0896 PF02811 PHP domain spr0896 PF11490 DNA polymerase III polC-type N-terminus II spr0896 PF17657 Bacterial DNA polymerase III alpha subunit finger domain spr0897 PF03009 Glycerophosphoryl diester phosphodiesterase family spr0903 PF02683 Cytochrome C biogenesis protein transmembrane region spr0904 PF08534 Redoxin spr0905 PF13520 Amino acid permease spr0906 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment spr0906 PF01297 Zinc-uptake complex component A periplasmic spr0913 PF01546 Peptidase family M20/M25/M40 spr0913 PF07687 Peptidase dimerisation domain spr0914 PF00762 Ferrochelatase spr0915 PF01741 Large-conductance mechanosensitive channel, MscL spr0917 PF06177 QueT transporter spr0918 PF01118 Semialdehyde dehydrogenase, NAD binding domain spr0918 PF02774 Semialdehyde dehydrogenase, dimerisation domain spr0919 PF00701 Dihydrodipicolinate synthetase family spr0920 PF10396 GTP-binding protein TrmE N-terminus spr0920 PF01926 50S ribosome-binding GTPase spr0920 PF12631 MnmE helical domain spr0921 PF01361 Tautomerase enzyme spr0922 PF00265 Thymidine kinase spr0924 PF00472 RF-1 domain spr0924 PF03462 PCRF domain spr0925 PF05175 Methyltransferase small domain spr0928 PF00464 Serine hydroxymethyltransferase spr0932 PF05958 tRNA (Uracil-5-)-methyltransferase spr0935 PF01032 FecCD transport family spr0936 PF01032 FecCD transport family spr0938 PF00005 ABC transporter spr0942 PF02796 Helix-turn-helix domain of resolvase spr0942 PF00239 Resolvase, N terminal domain spr0947 PF00781 Diacylglycerol kinase catalytic domain spr0948 PF02903 Alpha amylase, N-terminal ig-like domain spr0948 PF00128 Alpha amylase, catalytic domain spr0951 PF01381 Helix-turn-helix spr0952 PF06414 Zeta toxin spr0966 PF00501 AMP-binding enzyme spr0966 PF13193 AMP-binding enzyme C-terminal domain spr0971 PF05977 Transmembrane secretion effector spr0973 PF01098 Cell cycle protein spr0974 PF00311 Phosphoenolpyruvate carboxylase spr0977 PF00005 ABC transporter spr0978 PF10410 DnaB-helicase binding domain of primase spr0978 PF01807 CHC2 zinc finger spr0978 PF08275 DNA primase catalytic core, N-terminal domain spr0979 PF00140 Sigma-70 factor, region 1.2 spr0979 PF04542 Sigma-70 region 2 spr0979 PF04539 Sigma-70 region 3 spr0979 PF03979 Sigma-70 factor, region 1.1 spr0979 PF04545 Sigma-70, region 4 spr0980 PF01883 Iron-sulfur cluster assembly protein spr0981 PF13439 Glycosyltransferase Family 4 spr0981 PF00534 Glycosyl transferases group 1 spr0982 PF00534 Glycosyl transferases group 1 spr0982 PF13439 Glycosyltransferase Family 4 spr0984 PF01926 50S ribosome-binding GTPase spr0984 PF01018 GTP1/OBG spr0984 PF09269 Domain of unknown function (DUF1967) spr0989 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) spr0991 PF03061 Thioesterase superfamily spr0991 PF00571 CBS domain spr0991 PF07085 DRTGG domain spr0991 PF00392 Bacterial regulatory proteins, gntR family spr0992 PF00557 Metallopeptidase family M24 spr0995 PF13361 UvrD-like helicase C-terminal domain spr0995 PF00580 UvrD/REP helicase N-terminal domain spr0996 PF04002 RadC-like JAB domain spr0997 PF07722 Peptidase C26 spr0998 PF06971 Putative DNA-binding protein N-terminus spr0998 PF02629 CoA binding domain spr1001 PF00266 Aminotransferase class-V spr1002 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase spr1002 PF14572 Phosphoribosyl synthetase-associated domain spr1004 PF04607 Region found in RelA / SpoT proteins spr1005 PF01513 ATP-NAD kinase spr1006 PF00849 RNA pseudouridylate synthase spr1007 PF01515 Phosphate acetyl/butaryl transferase spr1010 PF02575 YbaB/EbfC DNA-binding family spr1012 PF00829 Ribosomal prokaryotic L21 protein spr1014 PF01016 Ribosomal L27 protein spr1017 PF01687 Riboflavin kinase spr1017 PF06574 FAD synthetase spr1018 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) spr1018 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 spr1019 PF02645 Uncharacterised protein, DegV family COG1307 spr1020 PF00216 Bacterial DNA-binding protein spr1021 PF12848 ABC transporter spr1021 PF16326 ABC transporter C-terminal domain spr1021 PF00005 ABC transporter spr1024 PF03119 NAD-dependent DNA ligase C4 zinc finger domain spr1024 PF00533 BRCA1 C Terminus (BRCT) domain spr1024 PF01653 NAD-dependent DNA ligase adenylation domain spr1024 PF03120 NAD-dependent DNA ligase OB-fold domain spr1024 PF12826 Helix-hairpin-helix motif spr1025 PF17999 Pullulanase N1-terminal domain spr1025 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) spr1025 PF00128 Alpha amylase, catalytic domain spr1028 PF00171 Aldehyde dehydrogenase family spr1029 PF02806 Alpha amylase, C-terminal all-beta domain spr1029 PF00128 Alpha amylase, catalytic domain spr1029 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) spr1030 PF00483 Nucleotidyl transferase spr1031 PF00483 Nucleotidyl transferase spr1032 PF00534 Glycosyl transferases group 1 spr1032 PF08323 Starch synthase catalytic domain spr1034 PF02595 Glycerate kinase family spr1036 PF03952 Enolase, N-terminal domain spr1036 PF00113 Enolase, C-terminal TIM barrel domain spr1039 PF12705 PD-(D/E)XK nuclease superfamily spr1040 PF13361 UvrD-like helicase C-terminal domain spr1040 PF00580 UvrD/REP helicase N-terminal domain spr1040 PF12705 PD-(D/E)XK nuclease superfamily spr1042 PF07501 G5 domain spr1042 PF07581 The GLUG motif spr1042 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region spr1042 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region spr1042 PF04650 YSIRK type signal peptide spr1042 PF00746 LPXTG cell wall anchor motif spr1043 PF01926 50S ribosome-binding GTPase spr1044 PF01351 Ribonuclease HII spr1045 PF00654 Voltage gated chloride channel spr1046 PF00589 Phage integrase family spr1047 PF03099 Biotin/lipoate A/B protein ligase family spr1047 PF10437 Bacterial lipoate protein ligase C-terminus spr1048 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain spr1048 PF07992 Pyridine nucleotide-disulphide oxidoreductase spr1049 PF02817 e3 binding domain spr1049 PF00364 Biotin-requiring enzyme spr1049 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) spr1050 PF02779 Transketolase, pyrimidine binding domain spr1050 PF02780 Transketolase, C-terminal domain spr1051 PF00676 Dehydrogenase E1 component spr1052 PF01554 MatE spr1053 PF01979 Amidohydrolase family spr1054 PF00293 NUDIX domain spr1055 PF03167 Uracil DNA glycosylase superfamily spr1057 PF13419 Haloacid dehalogenase-like hydrolase spr1062 PF02896 PEP-utilising enzyme, TIM barrel domain spr1062 PF00391 PEP-utilising enzyme, mobile domain spr1062 PF05524 PEP-utilising enzyme, N-terminal spr1063 PF00381 PTS HPr component phosphorylation site spr1064 PF00462 Glutaredoxin spr1065 PF02867 Ribonucleotide reductase, barrel domain spr1065 PF00317 Ribonucleotide reductase, all-alpha domain spr1065 PF08343 Ribonucleotide reductase N-terminal spr1066 PF00268 Ribonucleotide reductase, small chain spr1067 PF08220 DeoR-like helix-turn-helix domain spr1067 PF00455 DeoR C terminal sensor domain spr1069 PF00232 Glycosyl hydrolase family 1 spr1070 PF02378 Phosphotransferase system, EIIC spr1070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr1071 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit spr1072 PF00874 PRD domain spr1072 PF03123 CAT RNA binding domain spr1073 PF01791 DeoC/LacD family aldolase spr1074 PF00294 pfkB family carbohydrate kinase spr1075 PF02502 Ribose/Galactose Isomerase spr1076 PF02502 Ribose/Galactose Isomerase spr1082 PF06421 GTP-binding protein LepA C-terminus spr1082 PF00679 Elongation factor G C-terminus spr1082 PF03144 Elongation factor Tu domain 2 spr1082 PF00009 Elongation factor Tu GTP binding domain spr1083 PF00149 Calcineurin-like phosphoesterase spr1084 PF13476 AAA domain spr1085 PF02863 Arginine repressor, C-terminal domain spr1085 PF01316 Arginine repressor, DNA binding domain spr1086 PF01728 FtsJ-like methyltransferase spr1086 PF01479 S4 domain spr1087 PF00348 Polyprenyl synthetase spr1088 PF02609 Exonuclease VII small subunit spr1089 PF13742 OB-fold nucleic acid binding domain spr1089 PF02601 Exonuclease VII, large subunit spr1090 PF00485 Phosphoribulokinase / Uridine kinase family spr1092 PF16198 tRNA pseudouridylate synthase B C-terminal domain spr1092 PF01509 TruB family pseudouridylate synthase (N terminal domain) spr1098 PF04203 Sortase domain spr1099 PF03989 DNA gyrase C-terminal domain, beta-propeller spr1099 PF00521 DNA gyrase/topoisomerase IV, subunit A spr1100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain spr1100 PF00056 lactate/malate dehydrogenase, NAD binding domain spr1102 PF07669 Eco57I restriction-modification methylase spr1105 PF00753 Metallo-beta-lactamase superfamily spr1106 PF13426 PAS domain spr1106 PF00512 His Kinase A (phospho-acceptor) domain spr1106 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr1106 PF00672 HAMP domain spr1107 PF00486 Transcriptional regulatory protein, C terminal spr1107 PF00072 Response regulator receiver domain spr1108 PF14815 NUDIX domain spr1108 PF00730 HhH-GPD superfamily base excision DNA repair protein spr1109 PF01268 Formate--tetrahydrofolate ligase spr1111 PF02441 Flavoprotein spr1112 PF12822 ECF transporter, substrate-specific component spr1114 PF02829 3H domain spr1114 PF08279 HTH domain spr1118 PF02151 UvrB/uvrC motif spr1118 PF04851 Type III restriction enzyme, res subunit spr1118 PF00271 Helicase conserved C-terminal domain spr1118 PF12344 Ultra-violet resistance protein B spr1118 PF17757 UvrB interaction domain spr1120 PF00528 Binding-protein-dependent transport system inner membrane component spr1121 PF00005 ABC transporter spr1122 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain spr1122 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain spr1123 PF02881 SRP54-type protein, helical bundle domain spr1123 PF00448 SRP54-type protein, GTPase domain spr1126 PF06470 SMC proteins Flexible Hinge Domain spr1126 PF02463 RecF/RecN/SMC N terminal domain spr1127 PF00035 Double-stranded RNA binding motif spr1127 PF14622 Ribonuclease-III-like spr1128 PF00478 IMP dehydrogenase / GMP reductase domain spr1130 PF07728 AAA domain (dynein-related subfamily) spr1130 PF12102 Domain of unknown function (DUF3578) spr1135 PF00180 Isocitrate/isopropylmalate dehydrogenase spr1139 PF03932 CutC family spr1140 PF04304 Protein of unknown function (DUF454) spr1141 PF01396 Topoisomerase DNA binding C4 zinc finger spr1141 PF01751 Toprim domain spr1141 PF01131 DNA topoisomerase spr1144 PF02481 DNA recombination-mediator protein A spr1144 PF18255 DNA processing protein A sterile alpha motif domain spr1145 PF12804 MobA-like NTP transferase domain spr1148 PF08240 Alcohol dehydrogenase GroES-like domain spr1149 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase spr1151 PF04991 LicD family spr1152 PF04991 LicD family spr1153 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain spr1153 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain spr1153 PF02142 MGS-like domain spr1154 PF00117 Glutamine amidotransferase class-I spr1154 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain spr1155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain spr1155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain spr1156 PF00156 Phosphoribosyl transferase domain spr1157 PF00730 HhH-GPD superfamily base excision DNA repair protein spr1157 PF10576 Iron-sulfur binding domain of endonuclease III spr1157 PF00633 Helix-hairpin-helix motif spr1161 PF12848 ABC transporter spr1161 PF00005 ABC transporter spr1161 PF16326 ABC transporter C-terminal domain spr1162 PF01435 Peptidase family M48 spr1163 PF04011 LemA family spr1164 PF02527 rRNA small subunit methyltransferase G spr1165 PF00860 Permease family spr1166 PF00448 SRP54-type protein, GTPase domain spr1166 PF02881 SRP54-type protein, helical bundle domain spr1166 PF02978 Signal peptide binding domain spr1167 PF04297 Putative helix-turn-helix protein, YlxM / p13 like spr1169 PF01966 HD domain spr1171 PF01245 Ribosomal protein L19 spr1172 PF02537 CrcB-like protein, Camphor Resistance (CrcB) spr1173 PF02537 CrcB-like protein, Camphor Resistance (CrcB) spr1174 PF01842 ACT domain spr1174 PF00800 Prephenate dehydratase spr1174 PF01817 Chorismate mutase type II spr1175 PF00258 Flavodoxin spr1176 PF02272 DHHA1 domain spr1176 PF01368 DHH family spr1177 PF01197 Ribosomal protein L31 spr1179 PF04261 Dyp-type peroxidase family spr1179 PF10518 TAT (twin-arginine translocation) pathway signal sequence spr1181 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase spr1181 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain spr1183 PF00664 ABC transporter transmembrane region spr1183 PF03412 Peptidase C39 family spr1183 PF00005 ABC transporter spr1188 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region spr1189 PF04608 Phosphatidylglycerophosphatase A spr1191 PF00005 ABC transporter spr1191 PF08352 Oligopeptide/dipeptide transporter, C-terminal region spr1192 PF00528 Binding-protein-dependent transport system inner membrane component spr1192 PF12911 N-terminal TM domain of oligopeptide transport permease C spr1193 PF00528 Binding-protein-dependent transport system inner membrane component spr1194 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle spr1196 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase spr1202 PF00005 ABC transporter spr1202 PF02687 FtsX-like permease family spr1202 PF12704 MacB-like periplasmic core domain spr1203 PF00005 ABC transporter spr1203 PF00664 ABC transporter transmembrane region spr1204 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain spr1204 PF00326 Prolyl oligopeptidase family spr1205 PF00069 Protein kinase domain spr1211 PF00542 Ribosomal protein L7/L12 C-terminal domain spr1211 PF16320 Ribosomal protein L7/L12 dimerisation domain spr1212 PF00466 Ribosomal protein L10 spr1214 PF01979 Amidohydrolase family spr1215 PF00664 ABC transporter transmembrane region spr1215 PF00005 ABC transporter spr1216 PF00664 ABC transporter transmembrane region spr1216 PF00005 ABC transporter spr1217 PF01625 Peptide methionine sulfoxide reductase spr1217 PF01641 SelR domain spr1218 PF00288 GHMP kinases N terminal domain spr1218 PF08544 GHMP kinases C terminal spr1219 PF03447 Homoserine dehydrogenase, NAD binding domain spr1219 PF00742 Homoserine dehydrogenase spr1220 PF05389 Negative regulator of genetic competence (MecA) spr1223 PF00535 Glycosyl transferase family 2 spr1224 PF00534 Glycosyl transferases group 1 spr1224 PF13439 Glycosyltransferase Family 4 spr1225 PF04991 LicD family spr1226 PF03816 Cell envelope-related transcriptional attenuator domain spr1227 PF00800 Prephenate dehydratase spr1228 PF01202 Shikimate kinase spr1229 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) spr1230 PF06133 Control of competence regulator ComK, YlbF/YmcA spr1231 PF02153 Prephenate dehydrogenase spr1232 PF01264 Chorismate synthase spr1233 PF01761 3-dehydroquinate synthase spr1234 PF08501 Shikimate dehydrogenase substrate binding domain spr1234 PF18317 Shikimate 5'-dehydrogenase C-terminal domain spr1235 PF01487 Type I 3-dehydroquinase spr1236 PF10672 S-adenosylmethionine-dependent methyltransferase spr1236 PF17785 PUA-like domain spr1238 PF00005 ABC transporter spr1239 PF00128 Alpha amylase, catalytic domain spr1239 PF09154 Domain of unknown function (DUF1939) spr1240 PF02272 DHHA1 domain spr1240 PF01411 tRNA synthetases class II (A) spr1240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain spr1243 PF13416 Bacterial extracellular solute-binding protein spr1244 PF00528 Binding-protein-dependent transport system inner membrane component spr1246 PF00005 ABC transporter spr1246 PF08402 TOBE domain spr1247 PF01565 FAD binding domain spr1247 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain spr1249 PF03306 Alpha-acetolactate decarboxylase spr1250 PF00155 Aminotransferase class I and II spr1250 PF00392 Bacterial regulatory proteins, gntR family spr1251 PF00497 Bacterial extracellular solute-binding proteins, family 3 spr1252 PF01895 PhoU domain spr1253 PF00005 ABC transporter spr1254 PF00005 ABC transporter spr1255 PF00528 Binding-protein-dependent transport system inner membrane component spr1256 PF00528 Binding-protein-dependent transport system inner membrane component spr1257 PF12849 PBP superfamily domain spr1260 PF00459 Inositol monophosphatase family spr1261 PF05256 Uncharacterised protein family (UPF0223) spr1262 PF03960 ArsC family spr1264 PF13344 Haloacid dehalogenase-like hydrolase spr1266 PF04055 Radical SAM superfamily spr1266 PF06969 HemN C-terminal domain spr1269 PF01790 Prolipoprotein diacylglyceryl transferase spr1270 PF02603 HPr Serine kinase N terminus spr1270 PF07475 HPr Serine kinase C-terminal domain spr1271 PF01165 Ribosomal protein S21 spr1272 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase spr1273 PF02547 Queuosine biosynthesis protein spr1275 PF13302 Acetyltransferase (GNAT) domain spr1276 PF02540 NAD synthase spr1277 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family spr1277 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain spr1277 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain spr1279 PF01381 Helix-turn-helix spr1281 PF00005 ABC transporter spr1282 PF16325 Peptidase family U32 C-terminal domain spr1282 PF01136 Peptidase family U32 spr1284 PF16325 Peptidase family U32 C-terminal domain spr1284 PF01136 Peptidase family U32 spr1289 PF00005 ABC transporter spr1289 PF00664 ABC transporter transmembrane region spr1290 PF00664 ABC transporter transmembrane region spr1290 PF00005 ABC transporter spr1293 PF00005 ABC transporter spr1300 PF00958 GMP synthase C terminal domain spr1300 PF02540 NAD synthase spr1300 PF00117 Glutamine amidotransferase class-I spr1301 PF00392 Bacterial regulatory proteins, gntR family spr1301 PF07702 UTRA domain spr1302 PF00892 EamA-like transporter family spr1303 PF00144 Beta-lactamase spr1310 PF01327 Polypeptide deformylase spr1311 PF00588 SpoU rRNA Methylase family spr1311 PF08032 RNA 2'-O ribose methyltransferase substrate binding spr1312 PF07992 Pyridine nucleotide-disulphide oxidoreductase spr1314 PF00005 ABC transporter spr1315 PF00528 Binding-protein-dependent transport system inner membrane component spr1316 PF03960 ArsC family spr1317 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain spr1317 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain spr1320 PF03006 Haemolysin-III related spr1321 PF01174 SNO glutamine amidotransferase family spr1322 PF01680 SOR/SNZ family spr1323 PF07992 Pyridine nucleotide-disulphide oxidoreductase spr1323 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain spr1324 PF02424 ApbE family spr1325 PF00890 FAD binding domain spr1325 PF04205 FMN-binding domain spr1325 PF03358 NADPH-dependent FMN reductase spr1326 PF00890 FAD binding domain spr1326 PF03358 NADPH-dependent FMN reductase spr1326 PF04205 FMN-binding domain spr1327 PF05979 Bacterial protein of unknown function (DUF896) spr1328 PF02092 Glycyl-tRNA synthetase beta subunit spr1329 PF02091 Glycyl-tRNA synthetase alpha subunit spr1332 PF00248 Aldo/keto reductase family spr1333 PF01522 Polysaccharide deacetylase spr1333 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain spr1335 PF01408 Oxidoreductase family, NAD-binding Rossmann fold spr1335 PF02894 Oxidoreductase family, C-terminal alpha/beta domain spr1336 PF00270 DEAD/DEAH box helicase spr1336 PF00271 Helicase conserved C-terminal domain spr1343 PF03144 Elongation factor Tu domain 2 spr1343 PF00009 Elongation factor Tu GTP binding domain spr1343 PF03143 Elongation factor Tu C-terminal domain spr1344 PF00230 Major intrinsic protein spr1351 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I spr1351 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II spr1351 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III spr1351 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain spr1353 PF00497 Bacterial extracellular solute-binding proteins, family 3 spr1354 PF00005 ABC transporter spr1355 PF00528 Binding-protein-dependent transport system inner membrane component spr1357 PF01594 AI-2E family transporter spr1358 PF10282 Lactonase, 7-bladed beta-propeller spr1359 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain spr1359 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain spr1360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain spr1360 PF02874 ATP synthase alpha/beta family, beta-barrel domain spr1361 PF00231 ATP synthase spr1362 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain spr1362 PF00306 ATP synthase alpha/beta chain, C terminal domain spr1362 PF02874 ATP synthase alpha/beta family, beta-barrel domain spr1363 PF00213 ATP synthase delta (OSCP) subunit spr1364 PF00430 ATP synthase B/B' CF(0) spr1365 PF00119 ATP synthase A chain spr1366 PF00137 ATP synthase subunit C spr1368 PF00583 Acetyltransferase (GNAT) family spr1369 PF03449 Transcription elongation factor, N-terminal spr1369 PF01272 Transcription elongation factor, GreA/GreB, C-term spr1370 PF02618 YceG-like family spr1373 PF08245 Mur ligase middle domain spr1373 PF02875 Mur ligase family, glutamate ligase domain spr1373 PF01225 Mur ligase family, catalytic domain spr1375 PF00271 Helicase conserved C-terminal domain spr1375 PF12419 SNF2 Helicase protein spr1375 PF00176 SNF2 family N-terminal domain spr1376 PF00155 Aminotransferase class I and II spr1377 PF01053 Cys/Met metabolism PLP-dependent enzyme spr1382 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle spr1383 PF01943 Polysaccharide biosynthesis protein spr1383 PF14667 Polysaccharide biosynthesis C-terminal domain spr1384 PF08245 Mur ligase middle domain spr1384 PF02875 Mur ligase family, glutamate ligase domain spr1385 PF05532 CsbD-like spr1389 PF02833 DHHA2 domain spr1389 PF01368 DHH family spr1390 PF01541 GIY-YIG catalytic domain spr1391 PF05175 Methyltransferase small domain spr1392 PF00575 S1 RNA binding domain spr1393 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD spr1394 PF01084 Ribosomal protein S18 spr1395 PF00436 Single-strand binding protein family spr1396 PF01250 Ribosomal protein S6 spr1397 PF00152 tRNA synthetases class II (D, K and N) spr1397 PF01336 OB-fold nucleic acid binding domain spr1399 PF00155 Aminotransferase class I and II spr1402 PF03358 NADPH-dependent FMN reductase spr1403 PF04650 YSIRK type signal peptide spr1403 PF06458 MucBP domain spr1403 PF00746 LPXTG cell wall anchor motif spr1404 PF08270 M protein trans-acting positive regulator (MGA) PRD domain spr1404 PF05043 Mga helix-turn-helix domain spr1404 PF08280 M protein trans-acting positive regulator (MGA) HTH domain spr1405 PF03883 Peroxide stress protein YaaA spr1408 PF01327 Polypeptide deformylase spr1409 PF02798 Glutathione S-transferase, N-terminal domain spr1410 PF00690 Cation transporter/ATPase, N-terminus spr1410 PF00689 Cation transporting ATPase, C-terminus spr1411 PF01545 Cation efflux family spr1411 PF16916 Dimerisation domain of Zinc Transporter spr1412 PF16326 ABC transporter C-terminal domain spr1412 PF12848 ABC transporter spr1412 PF00005 ABC transporter spr1413 PF13735 tRNA nucleotidyltransferase domain 2 putative spr1413 PF01743 Poly A polymerase head domain spr1413 PF12627 Probable RNA and SrmB- binding site of polymerase A spr1414 PF05173 Dihydrodipicolinate reductase, C-terminus spr1414 PF01113 Dihydrodipicolinate reductase, N-terminus spr1415 PF02645 Uncharacterised protein, DegV family COG1307 spr1417 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain spr1417 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III spr1417 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II spr1417 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I spr1419 PF02457 DisA bacterial checkpoint controller nucleotide-binding spr1421 PF07992 Pyridine nucleotide-disulphide oxidoreductase spr1422 PF02650 WhiA C-terminal HTH domain spr1422 PF10298 WhiA N-terminal LAGLIDADG-like domain spr1422 PF14527 WhiA LAGLIDADG-like domain spr1423 PF01933 Uncharacterised protein family UPF0052 spr1424 PF03668 P-loop ATPase protein family spr1425 PF01042 Endoribonuclease L-PSP spr1426 PF01926 50S ribosome-binding GTPase spr1427 PF07724 AAA domain (Cdc48 subfamily) spr1427 PF10431 C-terminal, D2-small domain, of ClpB protein spr1427 PF06689 ClpX C4-type zinc finger spr1429 PF00186 Dihydrofolate reductase spr1430 PF00210 Ferritin-like domain spr1431 PF17890 Peptidoglycan hydrolase LytB WW-like domain spr1431 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain spr1431 PF01473 Putative cell wall binding repeat spr1431 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase spr1432 PF00121 Triosephosphate isomerase spr1433 PF07261 Replication initiation and membrane attachment spr1434 PF04204 Homoserine O-succinyltransferase spr1435 PF00156 Phosphoribosyl transferase domain spr1436 PF13649 Methyltransferase domain spr1437 PF03459 TOBE domain spr1437 PF00005 ABC transporter spr1437 PF17912 MalK OB fold domain spr1438 PF00857 Isochorismatase family spr1439 PF08222 CodY helix-turn-helix domain spr1439 PF06018 CodY GAF-like domain spr1440 PF00270 DEAD/DEAH box helicase spr1440 PF00271 Helicase conserved C-terminal domain spr1441 PF07690 Major Facilitator Superfamily spr1442 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain spr1442 PF07992 Pyridine nucleotide-disulphide oxidoreductase spr1443 PF08245 Mur ligase middle domain spr1443 PF08353 Domain of unknown function (DUF1727) spr1444 PF07685 CobB/CobQ-like glutamine amidotransferase domain spr1445 PF01321 Creatinase/Prolidase N-terminal domain spr1445 PF00557 Metallopeptidase family M24 spr1446 PF00665 Integrase core domain spr1446 PF13333 Integrase core domain spr1447 PF13276 HTH-like domain spr1447 PF13333 Integrase core domain spr1447 PF00665 Integrase core domain spr1449 PF07155 ECF-type riboflavin transporter, S component spr1450 PF08543 Phosphomethylpyrimidine kinase spr1451 PF01416 tRNA pseudouridine synthase spr1455 PF03831 PhnA domain spr1455 PF08274 PhnA Zinc-Ribbon spr1456 PF02224 Cytidylate kinase spr1459 PF00535 Glycosyl transferase family 2 spr1460 PF16363 GDP-mannose 4,6 dehydratase spr1461 PF01266 FAD dependent oxidoreductase spr1462 PF01784 NIF3 (NGG1p interacting factor 3) spr1463 PF04816 tRNA (adenine(22)-N(1))-methyltransferase spr1465 PF01553 Acyltransferase spr1467 PF00312 Ribosomal protein S15 spr1468 PF13460 NAD(P)H-binding spr1472 PF03129 Anticodon binding domain spr1472 PF02824 TGS domain spr1472 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) spr1472 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain spr1473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr1474 PF00072 Response regulator receiver domain spr1474 PF00486 Transcriptional regulatory protein, C terminal spr1477 PF02082 Transcriptional regulator spr1486 PF02580 D-Tyr-tRNA(Tyr) deacylase spr1487 PF13291 ACT domain spr1487 PF04607 Region found in RelA / SpoT proteins spr1487 PF02824 TGS domain spr1490 PF00753 Metallo-beta-lactamase superfamily spr1491 PF05649 Peptidase family M13 spr1491 PF01431 Peptidase family M13 spr1492 PF00005 ABC transporter spr1493 PF00950 ABC 3 transport family spr1494 PF01297 Zinc-uptake complex component A periplasmic spr1495 PF08534 Redoxin spr1497 PF00005 ABC transporter spr1497 PF02687 FtsX-like permease family spr1497 PF12704 MacB-like periplasmic core domain spr1499 PF00300 Histidine phosphatase superfamily (branch 1) spr1502 PF06827 Zinc finger found in FPG and IleRS spr1502 PF00133 tRNA synthetases class I (I, L, M and V) spr1502 PF08264 Anticodon-binding domain of tRNA spr1505 PF05103 DivIVA protein spr1508 PF04472 Cell division protein SepF spr1509 PF01168 Alanine racemase, N-terminal domain spr1510 PF00091 Tubulin/FtsZ family, GTPase domain spr1510 PF12327 FtsZ family, C-terminal domain spr1511 PF02491 SHS2 domain inserted in FTSA spr1511 PF11983 Membrane-attachment and polymerisation-promoting switch spr1513 PF00293 NUDIX domain spr1514 PF01225 Mur ligase family, catalytic domain spr1514 PF02875 Mur ligase family, glutamate ligase domain spr1514 PF08245 Mur ligase middle domain spr1515 PF07478 D-ala D-ala ligase C-terminus spr1515 PF01820 D-ala D-ala ligase N-terminus spr1516 PF02132 RecR protein spr1516 PF13662 Toprim domain spr1517 PF00905 Penicillin binding protein transpeptidase domain spr1517 PF03717 Penicillin-binding Protein dimerisation domain spr1519 PF00480 ROK family spr1524 PF04074 YhcH/YjgK/YiaL spr1525 PF00528 Binding-protein-dependent transport system inner membrane component spr1526 PF00528 Binding-protein-dependent transport system inner membrane component spr1528 PF02378 Phosphotransferase system, EIIC spr1528 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 spr1528 PF00367 phosphotransferase system, EIIB spr1529 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase spr1530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold spr1530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain spr1531 PF02012 BNR/Asp-box repeat spr1531 PF13088 BNR repeat-like domain spr1531 PF02973 Sialidase, N-terminal domain spr1532 PF00528 Binding-protein-dependent transport system inner membrane component spr1533 PF00528 Binding-protein-dependent transport system inner membrane component spr1534 PF01547 Bacterial extracellular solute-binding protein spr1536 PF13088 BNR repeat-like domain spr1536 PF02973 Sialidase, N-terminal domain spr1536 PF04650 YSIRK type signal peptide spr1538 PF05448 Acetyl xylan esterase (AXE1) spr1539 PF00270 DEAD/DEAH box helicase spr1539 PF00271 Helicase conserved C-terminal domain spr1539 PF17191 RecG wedge domain spr1540 PF00842 Alanine racemase, C-terminal domain spr1540 PF01168 Alanine racemase, N-terminal domain spr1541 PF01648 4'-phosphopantetheinyl transferase superfamily spr1542 PF00793 DAHP synthetase I family spr1543 PF00793 DAHP synthetase I family spr1544 PF07516 SecA Wing and Scaffold domain spr1544 PF01043 SecA preprotein cross-linking domain spr1544 PF07517 SecA DEAD-like domain spr1544 PF02810 SEC-C motif spr1546 PF00005 ABC transporter spr1553 PF01926 50S ribosome-binding GTPase spr1553 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal spr1554 PF00881 Nitroreductase family spr1555 PF07319 Primosomal protein DnaI N-terminus spr1555 PF01695 IstB-like ATP binding protein spr1557 PF03477 ATP cone domain spr1558 PF00392 Bacterial regulatory proteins, gntR family spr1559 PF00005 ABC transporter spr1562 PF00005 ABC transporter spr1562 PF13732 Domain of unknown function (DUF4162) spr1565 PF00480 ROK family spr1566 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 spr1566 PF02378 Phosphotransferase system, EIIC spr1566 PF00367 phosphotransferase system, EIIB spr1568 PF08244 Glycosyl hydrolases family 32 C terminal spr1568 PF00251 Glycosyl hydrolases family 32 N-terminal domain spr1569 PF00356 Bacterial regulatory proteins, lacI family spr1570 PF00368 Hydroxymethylglutaryl-coenzyme A reductase spr1571 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal spr1571 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal spr1577 PF00069 Protein kinase domain spr1577 PF03793 PASTA domain spr1579 PF01029 NusB family spr1579 PF01189 16S rRNA methyltransferase RsmB/F spr1580 PF02911 Formyl transferase, C-terminal domain spr1580 PF00551 Formyl transferase spr1581 PF04851 Type III restriction enzyme, res subunit spr1581 PF00271 Helicase conserved C-terminal domain spr1581 PF17764 3′ DNA-binding domain (3′BD) spr1581 PF18074 Primosomal protein N C-terminal domain spr1581 PF18319 PriA DNA helicase Cys-rich region (CRR) domain spr1582 PF01192 RNA polymerase Rpb6 spr1583 PF00625 Guanylate kinase spr1584 PF01966 HD domain spr1584 PF00013 KH domain spr1584 PF12072 Domain of unknown function (DUF3552) spr1585 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system spr1587 PF05636 HIGH Nucleotidyl Transferase spr1588 PF13649 Methyltransferase domain spr1591 PF01966 HD domain spr1592 PF01467 Cytidylyltransferase-like spr1593 PF01985 CRS1 / YhbY (CRM) domain spr1594 PF01926 50S ribosome-binding GTPase spr1597 PF00924 Mechanosensitive ion channel spr1598 PF00375 Sodium:dicarboxylate symporter family spr1602 PF00085 Thioredoxin spr1603 PF06508 Queuosine biosynthesis protein QueC spr1603 PF14489 QueF-like protein spr1604 PF00230 Major intrinsic protein spr1606 PF01432 Peptidase family M3 spr1606 PF08439 Oligopeptidase F spr1607 PF04452 RNA methyltransferase spr1609 PF00293 NUDIX domain spr1616 PF12002 MgsA AAA+ ATPase C terminal spr1616 PF16193 AAA C-terminal domain spr1616 PF05496 Holliday junction DNA helicase RuvB P-loop domain spr1617 PF00251 Glycosyl hydrolases family 32 N-terminal domain spr1617 PF08244 Glycosyl hydrolases family 32 C terminal spr1618 PF00528 Binding-protein-dependent transport system inner membrane component spr1619 PF00528 Binding-protein-dependent transport system inner membrane component spr1621 PF00356 Bacterial regulatory proteins, lacI family spr1622 PF08270 M protein trans-acting positive regulator (MGA) PRD domain spr1622 PF08280 M protein trans-acting positive regulator (MGA) HTH domain spr1622 PF05043 Mga helix-turn-helix domain spr1625 PF03780 Asp23 family, cell envelope-related function spr1626 PF05532 CsbD-like spr1631 PF00290 Tryptophan synthase alpha chain spr1632 PF00291 Pyridoxal-phosphate dependent enzyme spr1633 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase spr1634 PF00218 Indole-3-glycerol phosphate synthase spr1635 PF02885 Glycosyl transferase family, helical bundle domain spr1635 PF00591 Glycosyl transferase family, a/b domain spr1636 PF00117 Glutamine amidotransferase class-I spr1637 PF04715 Anthranilate synthase component I, N terminal region spr1637 PF00425 chorismate binding enzyme spr1639 PF00356 Bacterial regulatory proteins, lacI family spr1641 PF02308 MgtC family spr1643 PF00528 Binding-protein-dependent transport system inner membrane component spr1644 PF08402 TOBE domain spr1644 PF00005 ABC transporter spr1647 PF16363 GDP-mannose 4,6 dehydratase spr1648 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain spr1648 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain spr1649 PF01895 PhoU domain spr1652 PF13229 Right handed beta helix region spr1652 PF04650 YSIRK type signal peptide spr1652 PF12708 Pectate lyase superfamily protein spr1654 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family spr1655 PF02397 Bacterial sugar transferase spr1656 PF00005 ABC transporter spr1656 PF00664 ABC transporter transmembrane region spr1657 PF00664 ABC transporter transmembrane region spr1657 PF00005 ABC transporter spr1660 PF03372 Endonuclease/Exonuclease/phosphatase family spr1662 PF00156 Phosphoribosyl transferase domain spr1663 PF00860 Permease family spr1664 PF14207 DpnD/PcfM-like protein spr1665 PF17726 Dam-replacing HTH domain spr1665 PF06044 Dam-replacing family spr1667 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain spr1667 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain spr1668 PF10509 Galactokinase galactose-binding signature spr1668 PF08544 GHMP kinases C terminal spr1668 PF00288 GHMP kinases N terminal domain spr1669 PF00356 Bacterial regulatory proteins, lacI family spr1670 PF08240 Alcohol dehydrogenase GroES-like domain spr1670 PF00107 Zinc-binding dehydrogenase spr1671 PF13411 MerR HTH family regulatory protein spr1672 PF01545 Cation efflux family spr1674 PF04973 Nicotinamide mononucleotide transporter spr1677 PF00528 Binding-protein-dependent transport system inner membrane component spr1678 PF00571 CBS domain spr1678 PF00005 ABC transporter spr1682 PF05343 M42 glutamyl aminopeptidase spr1683 PF01370 NAD dependent epimerase/dehydratase family spr1684 PF01032 FecCD transport family spr1685 PF01032 FecCD transport family spr1686 PF00005 ABC transporter spr1687 PF01497 Periplasmic binding protein spr1688 PF01809 Putative membrane protein insertion efficiency factor spr1689 PF01479 S4 domain spr1689 PF00849 RNA pseudouridylate synthase spr1690 PF04079 Segregation and condensation complex subunit ScpB spr1691 PF02616 Segregation and condensation protein ScpA spr1692 PF02899 Phage integrase, N-terminal SAM-like domain spr1692 PF00589 Phage integrase family spr1695 PF01725 Ham1 family spr1696 PF01177 Asp/Glu/Hydantoin racemase spr1697 PF03672 Uncharacterised protein family (UPF0154) spr1698 PF00128 Alpha amylase, catalytic domain spr1698 PF16657 Maltogenic Amylase, C-terminal domain spr1699 PF00367 phosphotransferase system, EIIB spr1699 PF02378 Phosphotransferase system, EIIC spr1700 PF00392 Bacterial regulatory proteins, gntR family spr1700 PF07702 UTRA domain spr1703 PF00005 ABC transporter spr1703 PF08352 Oligopeptide/dipeptide transporter, C-terminal region spr1704 PF08352 Oligopeptide/dipeptide transporter, C-terminal region spr1704 PF00005 ABC transporter spr1705 PF12911 N-terminal TM domain of oligopeptide transport permease C spr1705 PF00528 Binding-protein-dependent transport system inner membrane component spr1706 PF00528 Binding-protein-dependent transport system inner membrane component spr1707 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle spr1709 PF00128 Alpha amylase, catalytic domain spr1710 PF00528 Binding-protein-dependent transport system inner membrane component spr1711 PF00528 Binding-protein-dependent transport system inner membrane component spr1712 PF01547 Bacterial extracellular solute-binding protein spr1713 PF16874 Glycosyl hydrolase family 36 C-terminal domain spr1713 PF16875 Glycosyl hydrolase family 36 N-terminal domain spr1714 PF12833 Helix-turn-helix domain spr1714 PF02311 AraC-like ligand binding domain spr1715 PF03099 Biotin/lipoate A/B protein ligase family spr1715 PF02237 Biotin protein ligase C terminal domain spr1717 PF05958 tRNA (Uracil-5-)-methyltransferase spr1717 PF01938 TRAM domain spr1718 PF02631 RecX family spr1719 PF04167 Protein of unknown function (DUF402) spr1721 PF13683 Integrase core domain spr1721 PF01610 Transposase spr1722 PF00118 TCP-1/cpn60 chaperonin family spr1723 PF00166 Chaperonin 10 Kd subunit spr1724 PF00436 Single-strand binding protein family spr1725 PF00106 short chain dehydrogenase spr1726 PF01588 Putative tRNA binding domain spr1726 PF14794 Domain of unknown function (DUF4479) spr1727 PF00085 Thioredoxin spr1734 PF00664 ABC transporter transmembrane region spr1734 PF00005 ABC transporter spr1738 PF01709 Transcriptional regulator spr1739 PF01289 Thiol-activated cytolysin spr1739 PF17440 Thiol-activated cytolysin beta sandwich domain spr1754 PF01510 N-acetylmuramoyl-L-alanine amidase spr1754 PF01473 Putative cell wall binding repeat spr1757 PF00154 recA bacterial DNA recombination protein spr1758 PF00994 Probable molybdopterin binding domain spr1758 PF18146 Damage-inducible protein CinA KH domain spr1758 PF02464 Competence-damaged protein spr1759 PF03816 Cell envelope-related transcriptional attenuator domain spr1761 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE spr1767 PF05147 Lanthionine synthetase C-like protein spr1767 PF13575 Domain of unknown function (DUF4135) spr1770 PF03412 Peptidase C39 family spr1770 PF00005 ABC transporter spr1770 PF00664 ABC transporter transmembrane region spr1771 PF00082 Subtilase family spr1773 PF00005 ABC transporter spr1775 PF00334 Nucleoside diphosphate kinase spr1776 PF04983 RNA polymerase Rpb1, domain 3 spr1776 PF04997 RNA polymerase Rpb1, domain 1 spr1776 PF04998 RNA polymerase Rpb1, domain 5 spr1776 PF00623 RNA polymerase Rpb1, domain 2 spr1776 PF05000 RNA polymerase Rpb1, domain 4 spr1777 PF04560 RNA polymerase Rpb2, domain 7 spr1777 PF04561 RNA polymerase Rpb2, domain 2 spr1777 PF10385 RNA polymerase beta subunit external 1 domain spr1777 PF04565 RNA polymerase Rpb2, domain 3 spr1777 PF04563 RNA polymerase beta subunit spr1777 PF00562 RNA polymerase Rpb2, domain 6 spr1778 PF01595 Cyclin M transmembrane N-terminal domain spr1778 PF00571 CBS domain spr1778 PF03471 Transporter associated domain spr1779 PF01223 DNA/RNA non-specific endonuclease spr1780 PF11772 DNA-directed RNA polymerase subunit beta spr1781 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) spr1782 PF13180 PDZ domain spr1782 PF05362 Lon protease (S16) C-terminal proteolytic domain spr1783 PF01467 Cytidylyltransferase-like spr1785 PF03590 Aspartate-ammonia ligase spr1787 PF01027 Inhibitor of apoptosis-promoting Bax1 spr1788 PF08032 RNA 2'-O ribose methyltransferase substrate binding spr1788 PF00588 SpoU rRNA Methylase family spr1789 PF00708 Acylphosphatase spr1790 PF02096 60Kd inner membrane protein spr1791 PF04055 Radical SAM superfamily spr1792 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain spr1792 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain spr1793 PF00156 Phosphoribosyl transferase domain spr1793 PF09182 Bacterial purine repressor, N-terminal spr1794 PF01336 OB-fold nucleic acid binding domain spr1794 PF01966 HD domain spr1795 PF02646 RmuC family spr1796 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain spr1796 PF04263 Thiamin pyrophosphokinase, catalytic domain spr1797 PF00834 Ribulose-phosphate 3 epimerase family spr1798 PF16745 RsgA N-terminal domain spr1798 PF03193 RsgA GTPase spr1799 PF00398 Ribosomal RNA adenine dimethylase spr1801 PF00005 ABC transporter spr1801 PF12704 MacB-like periplasmic core domain spr1801 PF02687 FtsX-like permease family spr1804 PF13331 Domain of unknown function (DUF4093) spr1804 PF13662 Toprim domain spr1805 PF01026 TatD related DNase spr1807 PF00468 Ribosomal protein L34 spr1808 PF00155 Aminotransferase class I and II spr1810 PF00582 Universal stress protein family spr1812 PF17763 Glutaminase/Asparaginase C-terminal domain spr1812 PF00710 Asparaginase, N-terminal spr1813 PF00356 Bacterial regulatory proteins, lacI family spr1814 PF00072 Response regulator receiver domain spr1814 PF00196 Bacterial regulatory proteins, luxR family spr1815 PF07730 Histidine kinase spr1815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr1817 PF00005 ABC transporter spr1820 PF00467 KOW motif spr1820 PF02357 Transcription termination factor nusG spr1822 PF00471 Ribosomal protein L33 spr1823 PF00912 Transglycosylase spr1823 PF00905 Penicillin binding protein transpeptidase domain spr1824 PF00849 RNA pseudouridylate synthase spr1825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain spr1825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain spr1826 PF02687 FtsX-like permease family spr1826 PF12704 MacB-like periplasmic core domain spr1829 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain spr1829 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain spr1831 PF00005 ABC transporter spr1832 PF00392 Bacterial regulatory proteins, gntR family spr1832 PF07702 UTRA domain spr1833 PF00232 Glycosyl hydrolase family 1 spr1834 PF02378 Phosphotransferase system, EIIC spr1835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr1836 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit spr1837 PF00465 Iron-containing alcohol dehydrogenase spr1837 PF00171 Aldehyde dehydrogenase family spr1839 PF01451 Low molecular weight phosphotyrosine protein phosphatase spr1841 PF00456 Transketolase, thiamine diphosphate binding domain spr1841 PF02780 Transketolase, C-terminal domain spr1841 PF02779 Transketolase, pyrimidine binding domain spr1844 PF00596 Class II Aldolase and Adducin N-terminal domain spr1845 PF01261 Xylose isomerase-like TIM barrel spr1846 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family spr1847 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 spr1848 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit spr1849 PF03611 PTS system sugar-specific permease component spr1851 PF01424 R3H domain spr1851 PF14804 Jag N-terminus spr1852 PF02096 60Kd inner membrane protein spr1853 PF00825 Ribonuclease P spr1854 PF00871 Acetokinase family spr1862 PF07963 Prokaryotic N-terminal methylation motif spr1863 PF00482 Type II secretion system (T2SS), protein F spr1864 PF00437 Type II/IV secretion system protein spr1866 PF00107 Zinc-binding dehydrogenase spr1866 PF13823 Alcohol dehydrogenase GroES-associated spr1866 PF08240 Alcohol dehydrogenase GroES-like domain spr1867 PF01979 Amidohydrolase family spr1868 PF01757 Acyltransferase family spr1869 PF01702 Queuine tRNA-ribosyltransferase spr1876 PF08645 Polynucleotide kinase 3 phosphatase spr1876 PF00475 Imidazoleglycerol-phosphate dehydratase spr1877 PF01554 MatE spr1878 PF14821 Threonine synthase N terminus spr1878 PF00291 Pyridoxal-phosphate dependent enzyme spr1880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region spr1881 PF00749 tRNA synthetases class I (E and Q), catalytic domain spr1882 PF00342 Phosphoglucose isomerase spr1884 PF07722 Peptidase C26 spr1885 PF00005 ABC transporter spr1885 PF00664 ABC transporter transmembrane region spr1887 PF00664 ABC transporter transmembrane region spr1887 PF00005 ABC transporter spr1888 PF05188 MutS domain II spr1888 PF01624 MutS domain I spr1888 PF05190 MutS family domain IV spr1888 PF00488 MutS domain V spr1888 PF05192 MutS domain III spr1889 PF01316 Arginine repressor, DNA binding domain spr1889 PF02863 Arginine repressor, C-terminal domain spr1890 PF05746 DALR anticodon binding domain spr1890 PF03485 Arginyl tRNA synthetase N terminal domain spr1890 PF00750 tRNA synthetases class I (R) spr1893 PF00486 Transcriptional regulatory protein, C terminal spr1893 PF00072 Response regulator receiver domain spr1894 PF16736 Single Cache-like spr1894 PF00989 PAS fold spr1894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr1894 PF00512 His Kinase A (phospho-acceptor) domain spr1895 PF12849 PBP superfamily domain spr1896 PF00528 Binding-protein-dependent transport system inner membrane component spr1897 PF00528 Binding-protein-dependent transport system inner membrane component spr1898 PF00005 ABC transporter spr1899 PF01895 PhoU domain spr1902 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus spr1902 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus spr1903 PF00483 Nucleotidyl transferase spr1905 PF01812 5-formyltetrahydrofolate cyclo-ligase family spr1906 PF01546 Peptidase family M20/M25/M40 spr1906 PF07687 Peptidase dimerisation domain spr1907 PF00132 Bacterial transferase hexapeptide (six repeats) spr1907 PF14602 Hexapeptide repeat of succinyl-transferase spr1907 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal spr1908 PF00892 EamA-like transporter family spr1909 PF00905 Penicillin binding protein transpeptidase domain spr1909 PF00912 Transglycosylase spr1910 PF00579 tRNA synthetases class I (W and Y) spr1910 PF01479 S4 domain spr1911 PF00403 Heavy-metal-associated domain spr1913 PF13847 Methyltransferase domain spr1916 PF00343 Carbohydrate phosphorylase spr1917 PF02446 4-alpha-glucanotransferase spr1918 PF13416 Bacterial extracellular solute-binding protein spr1919 PF00528 Binding-protein-dependent transport system inner membrane component spr1920 PF00528 Binding-protein-dependent transport system inner membrane component spr1922 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family spr1922 PF00356 Bacterial regulatory proteins, lacI family spr1923 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) spr1923 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 spr1924 PF01336 OB-fold nucleic acid binding domain spr1924 PF02938 GAD domain spr1924 PF00152 tRNA synthetases class II (D, K and N) spr1929 PF01381 Helix-turn-helix spr1931 PF13393 Histidyl-tRNA synthetase spr1931 PF03129 Anticodon binding domain spr1934 PF01883 Iron-sulfur cluster assembly protein spr1935 PF00920 Dehydratase family spr1936 PF02780 Transketolase, C-terminal domain spr1936 PF13292 1-deoxy-D-xylulose-5-phosphate synthase spr1936 PF02779 Transketolase, pyrimidine binding domain spr1937 PF00456 Transketolase, thiamine diphosphate binding domain spr1938 PF03611 PTS system sugar-specific permease component spr1940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 spr1943 PF01783 Ribosomal L32p protein family spr1944 PF00471 Ribosomal protein L33 spr1950 PF00480 ROK family spr1951 PF09261 Alpha mannosidase middle domain spr1951 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 spr1951 PF07748 Glycosyl hydrolases family 38 C-terminal domain spr1951 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain spr1951 PF01074 Glycosyl hydrolases family 38 N-terminal domain spr1953 PF07971 Glycosyl hydrolase family 92 spr1953 PF17678 Glycosyl hydrolase family 92 N-terminal domain spr1957 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain spr1957 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain spr1958 PF00696 Amino acid kinase family spr1959 PF03606 C4-dicarboxylate anaerobic carrier spr1960 PF01546 Peptidase family M20/M25/M40 spr1961 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region spr1961 PF07501 G5 domain spr1961 PF04650 YSIRK type signal peptide spr1961 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region spr1961 PF00746 LPXTG cell wall anchor motif spr1961 PF07581 The GLUG motif spr1963 PF00465 Iron-containing alcohol dehydrogenase spr1964 PF07882 L-fucose isomerase, second N-terminal domain spr1964 PF07881 L-fucose isomerase, first N-terminal domain spr1964 PF02952 L-fucose isomerase, C-terminal domain spr1965 PF08306 Glycosyl hydrolase family 98 spr1965 PF08307 Glycosyl hydrolase family 98 C-terminal domain spr1965 PF08305 NPCBM/NEW2 domain spr1967 PF03613 PTS system mannose/fructose/sorbose family IID component spr1969 PF03830 PTS system sorbose subfamily IIB component spr1971 PF05025 RbsD / FucU transport protein family spr1972 PF00596 Class II Aldolase and Adducin N-terminal domain spr1973 PF00370 FGGY family of carbohydrate kinases, N-terminal domain spr1973 PF02782 FGGY family of carbohydrate kinases, C-terminal domain spr1974 PF08220 DeoR-like helix-turn-helix domain spr1974 PF00455 DeoR C terminal sensor domain spr1975 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment spr1975 PF01297 Zinc-uptake complex component A periplasmic spr1976 PF00950 ABC 3 transport family spr1977 PF00005 ABC transporter spr1978 PF01047 MarR family spr1979 PF04914 DltD protein spr1980 PF00550 Phosphopantetheine attachment site spr1981 PF03062 MBOAT, membrane-bound O-acyltransferase family spr1982 PF00501 AMP-binding enzyme spr1982 PF13193 AMP-binding enzyme C-terminal domain spr1983 PF07690 Major Facilitator Superfamily spr1988 PF00230 Major intrinsic protein spr1991 PF02782 FGGY family of carbohydrate kinases, C-terminal domain spr1991 PF00370 FGGY family of carbohydrate kinases, N-terminal domain spr1993 PF01430 Hsp33 protein spr1994 PF01207 Dihydrouridine synthase (Dus) spr1996 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family spr1997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase spr1997 PF00672 HAMP domain spr1997 PF00512 His Kinase A (phospho-acceptor) domain spr1998 PF00072 Response regulator receiver domain spr1998 PF00486 Transcriptional regulatory protein, C terminal spr1999 PF02861 Clp amino terminal domain, pathogenicity island component spr1999 PF17871 AAA lid domain spr1999 PF07724 AAA domain (Cdc48 subfamily) spr1999 PF00004 ATPase family associated with various cellular activities (AAA) spr1999 PF10431 C-terminal, D2-small domain, of ClpB protein spr2001 PF05848 CtsR N-terminal HTH domain spr2001 PF17727 CtsR C-terminal dimerization domain spr2002 PF00005 ABC transporter spr2003 PF09084 NMT1/THI5 like spr2004 PF00528 Binding-protein-dependent transport system inner membrane component spr2008 PF00772 DnaB-like helicase N terminal domain spr2008 PF03796 DnaB-like helicase C terminal domain spr2009 PF01281 Ribosomal protein L9, N-terminal domain spr2009 PF03948 Ribosomal protein L9, C-terminal domain spr2010 PF02272 DHHA1 domain spr2010 PF01368 DHH family spr2011 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein spr2011 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus spr2013 PF00271 Helicase conserved C-terminal domain spr2013 PF04851 Type III restriction enzyme, res subunit spr2014 PF01205 Uncharacterized protein family UPF0029 spr2014 PF09186 Domain of unknown function (DUF1949) spr2015 PF00291 Pyridoxal-phosphate dependent enzyme spr2019 PF00889 Elongation factor TS spr2020 PF00318 Ribosomal protein S2 spr2021 PF01476 LysM domain spr2021 PF05257 CHAP domain spr2023 PF04085 rod shape-determining protein MreC spr2024 PF02361 Cobalt transport protein spr2025 PF00005 ABC transporter spr2026 PF00005 ABC transporter spr2027 PF01066 CDP-alcohol phosphatidyltransferase spr2029 PF05193 Peptidase M16 inactive domain spr2029 PF00675 Insulinase (Peptidase family M16) spr2030 PF05193 Peptidase M16 inactive domain spr2030 PF00675 Insulinase (Peptidase family M16) spr2032 PF02463 RecF/RecN/SMC N terminal domain spr2033 PF00478 IMP dehydrogenase / GMP reductase domain spr2033 PF00571 CBS domain spr2034 PF00579 tRNA synthetases class I (W and Y) spr2035 PF12848 ABC transporter spr2035 PF00005 ABC transporter spr2043 PF03047 COMC family spr2044 PF02590 Predicted SPOUT methyltransferase spr2045 PF13180 PDZ domain spr2046 PF02195 ParB-like nuclease domain spr2046 PF17762 HTH domain found in ParB protein