HKU360_RS00005	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
HKU360_RS00010	SM00480	DNA polymerase III beta subunit
HKU360_RS00030	SM00487	DEAD-like helicases superfamily
HKU360_RS00030	SM00490	helicase superfamily c-terminal domain
HKU360_RS00030	SM00982	HKU360_RS00030
HKU360_RS00030	SM01058	CarD-like/TRCF domain
HKU360_RS00035	SM00363	S4 RNA-binding domain
HKU360_RS00060	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS00245	SM01400	HKU360_RS00245
HKU360_RS00270	SM01211	HKU360_RS00270
HKU360_RS00290	SM00798	AICARFT/IMPCHase bienzyme
HKU360_RS00290	SM00851	MGS-like domain
HKU360_RS00300	SM01209	HKU360_RS00300
HKU360_RS00300	SM01210	HKU360_RS00300
HKU360_RS00305	SM01001	AIR carboxylase
HKU360_RS00320	SM00998	Adenylosuccinate lyase C-terminus
HKU360_RS00325	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS00330	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS00335	SM00226	Low molecular weight phosphatase family
HKU360_RS00340	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
HKU360_RS00355	SM00829	Enoylreductase
HKU360_RS00365	SM01403	HKU360_RS00365
HKU360_RS00385	SM01382	HKU360_RS00385
HKU360_RS00385	SM01383	HKU360_RS00385
HKU360_RS00400	SM00322	K homology RNA-binding domain
HKU360_RS00420	SM01374	HKU360_RS00420
HKU360_RS00425	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
HKU360_RS00480	SM00316	Ribosomal protein S1-like RNA-binding domain
HKU360_RS00495	SM00662	RNA polymerases D
HKU360_RS00600	SM00347	helix_turn_helix multiple antibiotic resistance protein
HKU360_RS00605	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS00620	SM00363	S4 RNA-binding domain
HKU360_RS00635	SM00663	RNA polymerase I subunit A N-terminus
HKU360_RS00780	SM00342	helix_turn_helix, arabinose operon control protein
HKU360_RS00810	SM00882	Coenzyme A transferase
HKU360_RS00815	SM00882	Coenzyme A transferase
HKU360_RS00890	SM00788	Adenylosuccinate synthetase
HKU360_RS00900	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
HKU360_RS00900	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
HKU360_RS00960	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
HKU360_RS00970	SM01007	Class II Aldolase and Adducin N-terminal domain
HKU360_RS00985	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS00995	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
HKU360_RS00995	SM00474	3'-5' exonuclease
HKU360_RS00995	SM00475	5'-3' exonuclease
HKU360_RS00995	SM00482	DNA polymerase A domain
HKU360_RS01000	SM00881	CoA binding domain
HKU360_RS01020	SM00470	ParB-like nuclease domain
HKU360_RS01090	SM00849	Metallo-beta-lactamase superfamily
HKU360_RS01100	SM00460	Transglutaminase/protease-like homologues
HKU360_RS01145	SM00347	helix_turn_helix multiple antibiotic resistance protein
HKU360_RS01150	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01155	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01170	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01175	SM00947	Carbonic anhydrase
HKU360_RS01200	SM00448	cheY-homologous receiver domain
HKU360_RS01200	SM00850	LytTr DNA-binding domain
HKU360_RS01215	SM00393	Putative single-stranded nucleic acids-binding domain
HKU360_RS01215	SM01245	HKU360_RS01215
HKU360_RS01250	SM01130	HKU360_RS01250
HKU360_RS01275	SM00650	Ribosomal RNA adenine dimethylases
HKU360_RS01290	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
HKU360_RS01325	SM00838	Elongation factor G C-terminus
HKU360_RS01325	SM00889	Elongation factor G, domain IV
HKU360_RS01330	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
HKU360_RS01335	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01340	SM00062	Bacterial periplasmic substrate-binding proteins
HKU360_RS01365	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01395	SM00936	Penicillin-binding protein 5, C-terminal domain 
HKU360_RS01415	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01420	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01475	SM01103	HKU360_RS01475
HKU360_RS01485	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HKU360_RS01510	SM00062	Bacterial periplasmic substrate-binding proteins
HKU360_RS01520	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01520	SM00930	HKU360_RS01520
HKU360_RS01570	SM00448	cheY-homologous receiver domain
HKU360_RS01570	SM00862	Transcriptional regulatory protein, C terminal
HKU360_RS01575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HKU360_RS01575	SM00387	Histidine kinase-like ATPases
HKU360_RS01575	SM00388	His Kinase A (phosphoacceptor) domain
HKU360_RS01600	SM00487	DEAD-like helicases superfamily
HKU360_RS01600	SM00490	helicase superfamily c-terminal domain
HKU360_RS01640	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HKU360_RS01675	SM00116	Domain in cystathionine beta-synthase and other proteins.
HKU360_RS01695	SM00363	S4 RNA-binding domain
HKU360_RS01700	SM01234	HKU360_RS01700
HKU360_RS01715	SM00014	Acid phosphatase homologues
HKU360_RS01720	SM00729	Elongator protein 3, MiaB family, Radical SAM
HKU360_RS01730	SM01091	Transporter associated domain
HKU360_RS01740	SM01131	HKU360_RS01740
HKU360_RS01765	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01965	SM00529	Helix-turn-helix diphteria tox regulatory element
HKU360_RS01965	SM00899	HKU360_RS01965
HKU360_RS01975	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01990	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS01990	SM00843	HKU360_RS01990
HKU360_RS02000	SM00649	Ribosomal protein L11/L12
HKU360_RS02035	SM00257	Lysin motif
HKU360_RS02050	SM00986	Uracil DNA glycosylase superfamily
HKU360_RS02050	SM00987	UreE urease accessory protein, C-terminal domain 
HKU360_RS02125	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS02130	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
HKU360_RS02130	SM01232	HKU360_RS02130
HKU360_RS02155	SM00316	Ribosomal protein S1-like RNA-binding domain
HKU360_RS02155	SM00955	HKU360_RS02155
HKU360_RS02205	SM00354	helix_turn _helix lactose operon repressor
HKU360_RS02220	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HKU360_RS02225	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS02260	SM00448	cheY-homologous receiver domain
HKU360_RS02260	SM00862	Transcriptional regulatory protein, C terminal
HKU360_RS02265	SM00091	PAS domain
HKU360_RS02265	SM00387	Histidine kinase-like ATPases
HKU360_RS02265	SM00388	His Kinase A (phosphoacceptor) domain
HKU360_RS02270	SM00849	Metallo-beta-lactamase superfamily
HKU360_RS02275	SM00358	Double-stranded RNA binding motif
HKU360_RS02275	SM00535	Ribonuclease III family
HKU360_RS02280	SM00968	SMC proteins Flexible Hinge Domain
HKU360_RS02325	SM00984	UDP binding domain
HKU360_RS02395	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS02395	SM00962	SRP54-type protein, GTPase domain
HKU360_RS02395	SM00963	SRP54-type protein, helical bundle domain
HKU360_RS02405	SM01061	CAT RNA binding domain
HKU360_RS02435	SM00316	Ribosomal protein S1-like RNA-binding domain
HKU360_RS02435	SM00732	Likely ribonuclease with RNase H fold.
HKU360_RS02440	SM00731	SprT homologues.
HKU360_RS02505	SM00855	Phosphoglycerate mutase family
HKU360_RS02585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HKU360_RS02595	SM00831	Cation transporter/ATPase, N-terminus
HKU360_RS02600	SM00354	helix_turn _helix lactose operon repressor
HKU360_RS02665	SM00937	HKU360_RS02665
HKU360_RS02670	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS02680	SM00849	Metallo-beta-lactamase superfamily
HKU360_RS02690	SM00479	HKU360_RS02690
HKU360_RS02690	SM00487	DEAD-like helicases superfamily
HKU360_RS02690	SM00491	HKU360_RS02690
HKU360_RS02730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS02730	SM00866	HKU360_RS02730
HKU360_RS02755	SM00830	Chorismate mutase type II
HKU360_RS02780	SM00387	Histidine kinase-like ATPases
HKU360_RS02780	SM00433	TopoisomeraseII
HKU360_RS02795	SM01192	HKU360_RS02795
HKU360_RS02795	SM01193	HKU360_RS02795
HKU360_RS02845	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS02870	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HKU360_RS02870	SM00292	breast cancer carboxy-terminal domain
HKU360_RS02870	SM00532	Ligase N family
HKU360_RS02875	SM00046	Diacylglycerol kinase catalytic domain (presumed)
HKU360_RS02910	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS02935	SM00892	DNA/RNA non-specific endonuclease
HKU360_RS02945	SM00873	B3/4 domain
HKU360_RS02945	SM00874	tRNA synthetase B5 domain
HKU360_RS02945	SM00896	Ferredoxin-fold anticodon binding domain
HKU360_RS02965	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS02985	SM00062	Bacterial periplasmic substrate-binding proteins
HKU360_RS02985	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
HKU360_RS03000	SM00400	zinc finger
HKU360_RS03000	SM00493	HKU360_RS03000
HKU360_RS03035	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS03155	SM00981	HKU360_RS03155
HKU360_RS03160	SM00854	Bacterial capsule synthesis protein PGA_cap
HKU360_RS03190	SM00363	S4 RNA-binding domain
HKU360_RS03210	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
HKU360_RS03215	SM00851	MGS-like domain
HKU360_RS03215	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
HKU360_RS03215	SM01209	HKU360_RS03215
HKU360_RS03225	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS03295	SM00420	helix_turn_helix, Deoxyribose operon repressor
HKU360_RS03295	SM01134	HKU360_RS03295
HKU360_RS03310	SM00047	Lysozyme subfamily 2
HKU360_RS03315	SM00047	Lysozyme subfamily 2
HKU360_RS03355	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS03375	SM00954	Region found in RelA / SpoT proteins
HKU360_RS03380	SM00448	cheY-homologous receiver domain
HKU360_RS03380	SM00862	Transcriptional regulatory protein, C terminal
HKU360_RS03385	SM00387	Histidine kinase-like ATPases
HKU360_RS03385	SM00388	His Kinase A (phosphoacceptor) domain
HKU360_RS03440	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS03440	SM00994	ClpX C4-type zinc finger
HKU360_RS03440	SM01086	C-terminal, D2-small domain, of ClpB protein
HKU360_RS03455	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS03455	SM01086	C-terminal, D2-small domain, of ClpB protein
HKU360_RS03500	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
HKU360_RS03515	SM00062	Bacterial periplasmic substrate-binding proteins
HKU360_RS03525	SM00986	Uracil DNA glycosylase superfamily
HKU360_RS03525	SM00987	UreE urease accessory protein, C-terminal domain 
HKU360_RS03535	SM01207	HKU360_RS03535
HKU360_RS03540	SM00387	Histidine kinase-like ATPases
HKU360_RS03540	SM00433	TopoisomeraseII
HKU360_RS03545	SM00434	DNA Topoisomerase IV
HKU360_RS03570	SM00316	Ribosomal protein S1-like RNA-binding domain
HKU360_RS03585	SM00450	Rhodanese Homology Domain
HKU360_RS03640	SM00478	endonuclease III
HKU360_RS03640	SM00525	HKU360_RS03640
HKU360_RS03685	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS03920	SM00641	Glycosyl hydrolases family 25
HKU360_RS03945	SM00028	Tetratricopeptide repeats
HKU360_RS03965	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS03970	SM00849	Metallo-beta-lactamase superfamily
HKU360_RS03985	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS03995	SM00861	Transketolase, pyrimidine binding domain
HKU360_RS04055	SM00729	Elongator protein 3, MiaB family, Radical SAM
HKU360_RS04115	SM00838	Elongation factor G C-terminus
HKU360_RS04160	SM00342	helix_turn_helix, arabinose operon control protein
HKU360_RS04160	SM00448	cheY-homologous receiver domain
HKU360_RS04175	SM00465	GIY-YIG type nucleases (URI domain)
HKU360_RS04235	SM00448	cheY-homologous receiver domain
HKU360_RS04235	SM00862	Transcriptional regulatory protein, C terminal
HKU360_RS04240	SM00387	Histidine kinase-like ATPases
HKU360_RS04240	SM00388	His Kinase A (phosphoacceptor) domain
HKU360_RS04250	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04255	SM01260	HKU360_RS04255
HKU360_RS04265	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04280	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS04305	SM00936	Penicillin-binding protein 5, C-terminal domain 
HKU360_RS04330	SM00905	Dihydroneopterin aldolase
HKU360_RS04345	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04365	SM00448	cheY-homologous receiver domain
HKU360_RS04380	SM00919	Malic enzyme, NAD binding domain
HKU360_RS04380	SM01274	HKU360_RS04380
HKU360_RS04385	SM00829	Enoylreductase
HKU360_RS04420	SM00881	CoA binding domain
HKU360_RS04435	SM01400	HKU360_RS04435
HKU360_RS04440	SM01118	HKU360_RS04440
HKU360_RS04445	SM00954	Region found in RelA / SpoT proteins
HKU360_RS04475	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04485	SM01240	HKU360_RS04485
HKU360_RS04515	SM00937	HKU360_RS04515
HKU360_RS04550	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04555	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04570	SM00434	DNA Topoisomerase IV
HKU360_RS04590	SM00046	Diacylglycerol kinase catalytic domain (presumed)
HKU360_RS04620	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
HKU360_RS04620	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
HKU360_RS04620	SM00493	HKU360_RS04620
HKU360_RS04660	SM00764	Citrate lyase ligase C-terminal domain
HKU360_RS04675	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS04680	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04680	SM00962	SRP54-type protein, GTPase domain
HKU360_RS04680	SM00963	SRP54-type protein, helical bundle domain
HKU360_RS04690	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS04690	SM00866	HKU360_RS04690
HKU360_RS04710	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04725	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS04735	SM00155	Phospholipase D. Active site motifs.
HKU360_RS04755	SM00506	Appr-1"-p processing enzyme
HKU360_RS04810	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04840	SM00387	Histidine kinase-like ATPases
HKU360_RS04840	SM00388	His Kinase A (phosphoacceptor) domain
HKU360_RS04845	SM00448	cheY-homologous receiver domain
HKU360_RS04845	SM00862	Transcriptional regulatory protein, C terminal
HKU360_RS04860	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04865	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04905	SM00904	Riboflavin kinase
HKU360_RS04935	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS04945	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS05000	SM00062	Bacterial periplasmic substrate-binding proteins
HKU360_RS05005	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS05040	SM00481	DNA polymerase alpha chain like domain
HKU360_RS05045	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS05050	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS05080	SM00354	helix_turn _helix lactose operon repressor
HKU360_RS05140	SM00487	DEAD-like helicases superfamily
HKU360_RS05140	SM00490	helicase superfamily c-terminal domain
HKU360_RS05145	SM00062	Bacterial periplasmic substrate-binding proteins
HKU360_RS05145	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
HKU360_RS05150	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS05220	SM00363	S4 RNA-binding domain
HKU360_RS05250	SM00857	Resolvase, N terminal domain
HKU360_RS05270	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS05275	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS05305	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS05315	SM00889	Elongation factor G, domain IV
HKU360_RS05360	SM00650	Ribosomal RNA adenine dimethylases
HKU360_RS05370	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS05390	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS05425	SM00487	DEAD-like helicases superfamily
HKU360_RS05425	SM00490	helicase superfamily c-terminal domain
HKU360_RS05435	SM00966	SpoVT / AbrB like domain 
HKU360_RS05440	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
HKU360_RS05440	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
HKU360_RS05440	SM00493	HKU360_RS05440
HKU360_RS05545	SM00116	Domain in cystathionine beta-synthase and other proteins.
HKU360_RS05570	SM00364	Leucine-rich repeats, bacterial type
HKU360_RS05570	SM00365	Leucine-rich repeat, SDS22-like subfamily
HKU360_RS05570	SM00369	Leucine-rich repeats, typical (most populated) subfamily
HKU360_RS05585	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS05610	SM00487	DEAD-like helicases superfamily
HKU360_RS05610	SM00490	helicase superfamily c-terminal domain
HKU360_RS05680	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS05685	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
HKU360_RS05715	SM00363	S4 RNA-binding domain
HKU360_RS05760	SM00849	Metallo-beta-lactamase superfamily
HKU360_RS05765	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HKU360_RS05770	SM00563	Phosphate acyltransferases
HKU360_RS05790	SM00487	DEAD-like helicases superfamily
HKU360_RS05790	SM00490	helicase superfamily c-terminal domain
HKU360_RS05815	SM00493	HKU360_RS05815
HKU360_RS05835	SM00855	Phosphoglycerate mutase family
HKU360_RS05865	SM00047	Lysozyme subfamily 2
HKU360_RS05865	SM01095	Cpl-7 lysozyme C-terminal domain
HKU360_RS05995	SM00507	HNH nucleases
HKU360_RS06070	SM00990	HKU360_RS06070
HKU360_RS06080	SM00885	D5 N terminal like
HKU360_RS06085	SM00942	Primase C terminal 1 (PriCT-1)
HKU360_RS06085	SM00943	Bifunctional DNA primase/polymerase, N-terminal
HKU360_RS06095	SM00490	helicase superfamily c-terminal domain
HKU360_RS06125	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS06130	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS06135	SM00910	HKU360_RS06135
HKU360_RS06145	SM00411	bacterial (prokaryotic) histone like domain
HKU360_RS06180	SM00363	S4 RNA-binding domain
HKU360_RS06215	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS06230	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS06230	SM01086	C-terminal, D2-small domain, of ClpB protein
HKU360_RS06255	SM00363	S4 RNA-binding domain
HKU360_RS06275	SM00864	Tubulin/FtsZ family, GTPase domain
HKU360_RS06275	SM00865	Tubulin/FtsZ family, C-terminal domain
HKU360_RS06280	SM00842	Cell division protein FtsA
HKU360_RS06305	SM00838	Elongation factor G C-terminus
HKU360_RS06310	SM00450	Rhodanese Homology Domain
HKU360_RS06345	SM00354	helix_turn _helix lactose operon repressor
HKU360_RS06400	SM00419	helix_turn_helix, cAMP Regulatory protein
HKU360_RS06410	SM00873	B3/4 domain
HKU360_RS06420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HKU360_RS06420	SM00387	Histidine kinase-like ATPases
HKU360_RS06425	SM00342	helix_turn_helix, arabinose operon control protein
HKU360_RS06425	SM00448	cheY-homologous receiver domain
HKU360_RS06475	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HKU360_RS06475	SM00487	DEAD-like helicases superfamily
HKU360_RS06545	SM00342	helix_turn_helix, arabinose operon control protein
HKU360_RS06545	SM00448	cheY-homologous receiver domain
HKU360_RS06550	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HKU360_RS06590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS06595	SM01149	HKU360_RS06595
HKU360_RS06600	SM00872	Alpha mannosidase, middle domain
HKU360_RS06695	SM00487	DEAD-like helicases superfamily
HKU360_RS06695	SM00490	helicase superfamily c-terminal domain
HKU360_RS06710	SM00316	Ribosomal protein S1-like RNA-binding domain
HKU360_RS06720	SM00421	helix_turn_helix, Lux Regulon
HKU360_RS06720	SM00448	cheY-homologous receiver domain
HKU360_RS06725	SM00387	Histidine kinase-like ATPases
HKU360_RS06735	SM00220	Serine/Threonine protein kinases, catalytic domain
HKU360_RS06735	SM00740	HKU360_RS06735
HKU360_RS06740	SM00331	Sigma factor PP2C-like phosphatases
HKU360_RS06740	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
HKU360_RS06755	SM00487	DEAD-like helicases superfamily
HKU360_RS06755	SM00490	helicase superfamily c-terminal domain
HKU360_RS06760	SM01409	HKU360_RS06760
HKU360_RS06765	SM00072	Guanylate kinase homologues.
HKU360_RS06770	SM00322	K homology RNA-binding domain
HKU360_RS06770	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HKU360_RS06785	SM00882	Coenzyme A transferase
HKU360_RS06790	SM00882	Coenzyme A transferase
HKU360_RS06815	SM00981	HKU360_RS06815
HKU360_RS06870	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS06880	SM00487	DEAD-like helicases superfamily
HKU360_RS06880	SM00490	helicase superfamily c-terminal domain
HKU360_RS06890	SM00740	HKU360_RS06890
HKU360_RS06925	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS06935	SM00861	Transketolase, pyrimidine binding domain
HKU360_RS07035	SM01133	HKU360_RS07035
HKU360_RS07070	SM00420	helix_turn_helix, Deoxyribose operon repressor
HKU360_RS07070	SM01134	HKU360_RS07070
HKU360_RS07115	SM00322	K homology RNA-binding domain
HKU360_RS07130	SM00892	DNA/RNA non-specific endonuclease
HKU360_RS07135	SM00047	Lysozyme subfamily 2
HKU360_RS07135	SM00287	Bacterial SH3 domain homologues
HKU360_RS07280	SM00487	DEAD-like helicases superfamily
HKU360_RS07285	SM00990	HKU360_RS07285
HKU360_RS07290	SM00885	D5 N terminal like
HKU360_RS07295	SM00482	DNA polymerase A domain
HKU360_RS07355	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS07395	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS07470	SM00878	Biotin carboxylase C-terminal domain
HKU360_RS07485	SM00825	Beta-ketoacyl synthase
HKU360_RS07490	SM00822	HKU360_RS07490
HKU360_RS07495	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
HKU360_RS07515	SM00347	helix_turn_helix multiple antibiotic resistance protein
HKU360_RS07525	SM00271	DnaJ molecular chaperone homology domain
HKU360_RS07545	SM00047	Lysozyme subfamily 2
HKU360_RS07555	SM00855	Phosphoglycerate mutase family
HKU360_RS07570	SM00845	GatB domain
HKU360_RS07615	SM00870	HKU360_RS07615
HKU360_RS07625	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS07630	SM00487	DEAD-like helicases superfamily
HKU360_RS07630	SM00490	helicase superfamily c-terminal domain
HKU360_RS07635	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS07650	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS07655	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS07660	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS07680	SM00365	Leucine-rich repeat, SDS22-like subfamily
HKU360_RS07680	SM00369	Leucine-rich repeats, typical (most populated) subfamily
HKU360_RS07680	SM00725	NEAr Transporter domain
HKU360_RS07690	SM01005	Alanine racemase, C-terminal domain
HKU360_RS07700	SM00957	SecA DEAD-like domain
HKU360_RS07700	SM00958	SecA preprotein cross-linking domain
HKU360_RS07735	SM00640	Glycosyl hydrolases family 32
HKU360_RS07740	SM00354	helix_turn _helix lactose operon repressor
HKU360_RS07755	SM00841	Elongation factor P, C-terminal
HKU360_RS07755	SM01185	HKU360_RS07755
HKU360_RS07770	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS07780	SM00892	DNA/RNA non-specific endonuclease
HKU360_RS07805	SM00047	Lysozyme subfamily 2
HKU360_RS07805	SM00287	Bacterial SH3 domain homologues
HKU360_RS08040	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS08050	SM01040	BRO family, N-terminal domain
HKU360_RS08065	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS08080	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS08125	SM00478	endonuclease III
HKU360_RS08130	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS08140	SM00014	Acid phosphatase homologues
HKU360_RS08145	SM00463	Small MutS-related domain
HKU360_RS08145	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HKU360_RS08145	SM00534	ATPase domain of DNA mismatch repair MUTS family
HKU360_RS08170	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS08215	SM00419	helix_turn_helix, cAMP Regulatory protein
HKU360_RS08220	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
HKU360_RS08220	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
HKU360_RS08225	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS08230	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS08240	SM00422	helix_turn_helix, mercury resistance
HKU360_RS08245	SM00479	HKU360_RS08245
HKU360_RS08260	SM01133	HKU360_RS08260
HKU360_RS08275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS08305	SM00849	Metallo-beta-lactamase superfamily
HKU360_RS08310	SM01230	HKU360_RS08310
HKU360_RS08315	SM00422	helix_turn_helix, mercury resistance
HKU360_RS08335	SM00244	prohibitin homologues
HKU360_RS08340	SM01120	HKU360_RS08340
HKU360_RS08340	SM01121	HKU360_RS08340
HKU360_RS08450	SM00487	DEAD-like helicases superfamily
HKU360_RS08470	SM00421	helix_turn_helix, Lux Regulon
HKU360_RS08470	SM00448	cheY-homologous receiver domain
HKU360_RS08485	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS08520	SM01133	HKU360_RS08520
HKU360_RS08540	SM00420	helix_turn_helix, Deoxyribose operon repressor
HKU360_RS08540	SM01134	HKU360_RS08540
HKU360_RS08570	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS08590	SM00967	RNA 2'-O ribose methyltransferase substrate binding
HKU360_RS08605	SM00840	HKU360_RS08605
HKU360_RS08625	SM00316	Ribosomal protein S1-like RNA-binding domain
HKU360_RS08625	SM00322	K homology RNA-binding domain
HKU360_RS08650	SM01387	HKU360_RS08650
HKU360_RS08675	SM00347	helix_turn_helix multiple antibiotic resistance protein
HKU360_RS08680	SM00479	HKU360_RS08680
HKU360_RS08680	SM00481	DNA polymerase alpha chain like domain
HKU360_RS08705	SM01323	HKU360_RS08705
HKU360_RS08715	SM00642	Alpha-amylase domain
HKU360_RS08720	SM00642	Alpha-amylase domain
HKU360_RS08725	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS08745	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
HKU360_RS08745	SM00954	Region found in RelA / SpoT proteins
HKU360_RS08810	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS08855	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS08860	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS08930	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
HKU360_RS08930	SM00387	Histidine kinase-like ATPases
HKU360_RS08930	SM00388	His Kinase A (phosphoacceptor) domain
HKU360_RS08935	SM00448	cheY-homologous receiver domain
HKU360_RS08935	SM00862	Transcriptional regulatory protein, C terminal
HKU360_RS08945	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS08975	SM00327	von Willebrand factor (vWF) type A domain
HKU360_RS09005	SM00892	DNA/RNA non-specific endonuclease
HKU360_RS09050	SM00420	helix_turn_helix, Deoxyribose operon repressor
HKU360_RS09050	SM01134	HKU360_RS09050
HKU360_RS09100	SM00530	Helix-turn-helix XRE-family like proteins 
HKU360_RS09110	SM00883	Chaperonin 10 Kd subunit
HKU360_RS09115	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS09115	SM01086	C-terminal, D2-small domain, of ClpB protein
HKU360_RS09125	SM00357	Cold shock protein domain
HKU360_RS09155	SM01221	HKU360_RS09155
HKU360_RS09155	SM01222	HKU360_RS09155
HKU360_RS09190	SM00028	Tetratricopeptide repeats
HKU360_RS09190	SM01043	Bacterial transcriptional activator domain
HKU360_RS09210	SM00642	Alpha-amylase domain
HKU360_RS09220	SM00345	helix_turn_helix gluconate operon transcriptional repressor
HKU360_RS09220	SM00866	HKU360_RS09220
HKU360_RS09270	SM00732	Likely ribonuclease with RNase H fold.
HKU360_RS09285	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS09290	SM00852	Probable molybdopterin binding domain
HKU360_RS09300	SM00278	Helix-hairpin-helix DNA-binding motif class 1
HKU360_RS09310	SM00853	MutL C terminal dimerisation domain
HKU360_RS09310	SM01340	HKU360_RS09310
HKU360_RS09315	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
HKU360_RS09315	SM00534	ATPase domain of DNA mismatch repair MUTS family
HKU360_RS09330	SM00836	DALR anticodon binding domain
HKU360_RS09330	SM01016	Arginyl tRNA synthetase N terminal dom
HKU360_RS09380	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
HKU360_RS09440	SM00363	S4 RNA-binding domain
HKU360_RS09440	SM01390	HKU360_RS09440
HKU360_RS09465	SM01228	HKU360_RS09465
HKU360_RS09500	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS09505	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS09535	SM00984	UDP binding domain
HKU360_RS09560	SM00116	Domain in cystathionine beta-synthase and other proteins.
HKU360_RS09560	SM01240	HKU360_RS09560
HKU360_RS09575	SM00382	ATPases associated with a variety of cellular activities
HKU360_RS09610	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
HKU360_RS09615	SM00470	ParB-like nuclease domain
