JMUB1235_RS00005	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
JMUB1235_RS00010	SM00480	DNA polymerase III beta subunit
JMUB1235_RS00030	SM00487	DEAD-like helicases superfamily
JMUB1235_RS00030	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS00030	SM00982	JMUB1235_RS00030
JMUB1235_RS00030	SM01058	CarD-like/TRCF domain
JMUB1235_RS00035	SM00363	S4 RNA-binding domain
JMUB1235_RS00060	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS00180	SM01400	JMUB1235_RS00180
JMUB1235_RS00205	SM01211	JMUB1235_RS00205
JMUB1235_RS00225	SM00798	AICARFT/IMPCHase bienzyme
JMUB1235_RS00225	SM00851	MGS-like domain
JMUB1235_RS00235	SM01209	JMUB1235_RS00235
JMUB1235_RS00235	SM01210	JMUB1235_RS00235
JMUB1235_RS00240	SM01001	AIR carboxylase
JMUB1235_RS00255	SM00998	Adenylosuccinate lyase C-terminus
JMUB1235_RS00260	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS00265	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS00270	SM00226	Low molecular weight phosphatase family
JMUB1235_RS00275	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
JMUB1235_RS00290	SM00829	Enoylreductase
JMUB1235_RS00300	SM01403	JMUB1235_RS00300
JMUB1235_RS00320	SM01382	JMUB1235_RS00320
JMUB1235_RS00320	SM01383	JMUB1235_RS00320
JMUB1235_RS00335	SM00322	K homology RNA-binding domain
JMUB1235_RS00355	SM01374	JMUB1235_RS00355
JMUB1235_RS00360	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
JMUB1235_RS00415	SM00316	Ribosomal protein S1-like RNA-binding domain
JMUB1235_RS00435	SM00662	RNA polymerases D
JMUB1235_RS00545	SM00347	helix_turn_helix multiple antibiotic resistance protein
JMUB1235_RS00550	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS00565	SM00363	S4 RNA-binding domain
JMUB1235_RS00580	SM00663	RNA polymerase I subunit A N-terminus
JMUB1235_RS00735	SM00342	helix_turn_helix, arabinose operon control protein
JMUB1235_RS00765	SM00882	Coenzyme A transferase
JMUB1235_RS00770	SM00882	Coenzyme A transferase
JMUB1235_RS00845	SM00788	Adenylosuccinate synthetase
JMUB1235_RS00855	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
JMUB1235_RS00855	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
JMUB1235_RS00920	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
JMUB1235_RS00930	SM01007	Class II Aldolase and Adducin N-terminal domain
JMUB1235_RS00950	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS00960	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
JMUB1235_RS00960	SM00474	3'-5' exonuclease
JMUB1235_RS00960	SM00475	5'-3' exonuclease
JMUB1235_RS00960	SM00482	DNA polymerase A domain
JMUB1235_RS00965	SM00881	CoA binding domain
JMUB1235_RS00985	SM00470	ParB-like nuclease domain
JMUB1235_RS01045	SM00849	Metallo-beta-lactamase superfamily
JMUB1235_RS01055	SM00460	Transglutaminase/protease-like homologues
JMUB1235_RS01095	SM00347	helix_turn_helix multiple antibiotic resistance protein
JMUB1235_RS01100	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01105	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01120	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01125	SM00947	Carbonic anhydrase
JMUB1235_RS01155	SM00448	cheY-homologous receiver domain
JMUB1235_RS01155	SM00850	LytTr DNA-binding domain
JMUB1235_RS01170	SM00393	Putative single-stranded nucleic acids-binding domain
JMUB1235_RS01170	SM01245	JMUB1235_RS01170
JMUB1235_RS01210	SM01130	JMUB1235_RS01210
JMUB1235_RS01235	SM00650	Ribosomal RNA adenine dimethylases
JMUB1235_RS01250	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
JMUB1235_RS01285	SM00838	Elongation factor G C-terminus
JMUB1235_RS01285	SM00889	Elongation factor G, domain IV
JMUB1235_RS01290	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
JMUB1235_RS01300	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01305	SM00062	Bacterial periplasmic substrate-binding proteins
JMUB1235_RS01330	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01360	SM00936	Penicillin-binding protein 5, C-terminal domain 
JMUB1235_RS01380	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01385	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01440	SM01103	JMUB1235_RS01440
JMUB1235_RS01450	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JMUB1235_RS01480	SM00062	Bacterial periplasmic substrate-binding proteins
JMUB1235_RS01490	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01490	SM00930	JMUB1235_RS01490
JMUB1235_RS01540	SM00448	cheY-homologous receiver domain
JMUB1235_RS01540	SM00862	Transcriptional regulatory protein, C terminal
JMUB1235_RS01545	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JMUB1235_RS01545	SM00387	Histidine kinase-like ATPases
JMUB1235_RS01545	SM00388	His Kinase A (phosphoacceptor) domain
JMUB1235_RS01570	SM00487	DEAD-like helicases superfamily
JMUB1235_RS01570	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS01610	SM00967	RNA 2'-O ribose methyltransferase substrate binding
JMUB1235_RS01645	SM00116	Domain in cystathionine beta-synthase and other proteins.
JMUB1235_RS01665	SM00363	S4 RNA-binding domain
JMUB1235_RS01670	SM01234	JMUB1235_RS01670
JMUB1235_RS01685	SM00014	Acid phosphatase homologues
JMUB1235_RS01690	SM00729	Elongator protein 3, MiaB family, Radical SAM
JMUB1235_RS01700	SM01091	Transporter associated domain
JMUB1235_RS01710	SM01131	JMUB1235_RS01710
JMUB1235_RS01735	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS01990	SM00529	Helix-turn-helix diphteria tox regulatory element
JMUB1235_RS01990	SM00899	JMUB1235_RS01990
JMUB1235_RS02000	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS02015	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS02015	SM00843	JMUB1235_RS02015
JMUB1235_RS02035	SM00649	Ribosomal protein L11/L12
JMUB1235_RS02070	SM00257	Lysin motif
JMUB1235_RS02085	SM00986	Uracil DNA glycosylase superfamily
JMUB1235_RS02085	SM00987	UreE urease accessory protein, C-terminal domain 
JMUB1235_RS02175	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS02180	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
JMUB1235_RS02180	SM01232	JMUB1235_RS02180
JMUB1235_RS02210	SM00316	Ribosomal protein S1-like RNA-binding domain
JMUB1235_RS02210	SM00955	JMUB1235_RS02210
JMUB1235_RS02260	SM00354	helix_turn _helix lactose operon repressor
JMUB1235_RS02275	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
JMUB1235_RS02280	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS02315	SM00448	cheY-homologous receiver domain
JMUB1235_RS02315	SM00862	Transcriptional regulatory protein, C terminal
JMUB1235_RS02320	SM00091	PAS domain
JMUB1235_RS02320	SM00387	Histidine kinase-like ATPases
JMUB1235_RS02320	SM00388	His Kinase A (phosphoacceptor) domain
JMUB1235_RS02325	SM00849	Metallo-beta-lactamase superfamily
JMUB1235_RS02330	SM00358	Double-stranded RNA binding motif
JMUB1235_RS02330	SM00535	Ribonuclease III family
JMUB1235_RS02335	SM00968	SMC proteins Flexible Hinge Domain
JMUB1235_RS02385	SM00984	UDP binding domain
JMUB1235_RS02450	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS02450	SM00962	SRP54-type protein, GTPase domain
JMUB1235_RS02450	SM00963	SRP54-type protein, helical bundle domain
JMUB1235_RS02460	SM01061	CAT RNA binding domain
JMUB1235_RS02490	SM00316	Ribosomal protein S1-like RNA-binding domain
JMUB1235_RS02490	SM00732	Likely ribonuclease with RNase H fold.
JMUB1235_RS02495	SM00731	SprT homologues.
JMUB1235_RS02560	SM00855	Phosphoglycerate mutase family
JMUB1235_RS02640	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JMUB1235_RS02650	SM00831	Cation transporter/ATPase, N-terminus
JMUB1235_RS02655	SM00354	helix_turn _helix lactose operon repressor
JMUB1235_RS02725	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS02735	SM00849	Metallo-beta-lactamase superfamily
JMUB1235_RS02745	SM00479	JMUB1235_RS02745
JMUB1235_RS02745	SM00487	DEAD-like helicases superfamily
JMUB1235_RS02745	SM00491	JMUB1235_RS02745
JMUB1235_RS02775	SM00857	Resolvase, N terminal domain
JMUB1235_RS02785	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS02790	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS02835	SM00487	DEAD-like helicases superfamily
JMUB1235_RS02835	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS02890	SM00470	ParB-like nuclease domain
JMUB1235_RS02925	SM00047	Lysozyme subfamily 2
JMUB1235_RS02935	SM00892	DNA/RNA non-specific endonuclease
JMUB1235_RS02950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS02950	SM00866	JMUB1235_RS02950
JMUB1235_RS02975	SM00830	Chorismate mutase type II
JMUB1235_RS03000	SM00387	Histidine kinase-like ATPases
JMUB1235_RS03000	SM00433	TopoisomeraseII
JMUB1235_RS03015	SM01192	JMUB1235_RS03015
JMUB1235_RS03015	SM01193	JMUB1235_RS03015
JMUB1235_RS03050	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03080	SM00278	Helix-hairpin-helix DNA-binding motif class 1
JMUB1235_RS03080	SM00292	breast cancer carboxy-terminal domain
JMUB1235_RS03080	SM00532	Ligase N family
JMUB1235_RS03085	SM00046	Diacylglycerol kinase catalytic domain (presumed)
JMUB1235_RS03120	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03145	SM00892	DNA/RNA non-specific endonuclease
JMUB1235_RS03155	SM00873	B3/4 domain
JMUB1235_RS03155	SM00874	tRNA synthetase B5 domain
JMUB1235_RS03155	SM00896	Ferredoxin-fold anticodon binding domain
JMUB1235_RS03175	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03195	SM00062	Bacterial periplasmic substrate-binding proteins
JMUB1235_RS03195	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
JMUB1235_RS03210	SM00400	zinc finger
JMUB1235_RS03210	SM00493	JMUB1235_RS03210
JMUB1235_RS03245	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03370	SM00981	JMUB1235_RS03370
JMUB1235_RS03375	SM00854	Bacterial capsule synthesis protein PGA_cap
JMUB1235_RS03410	SM00363	S4 RNA-binding domain
JMUB1235_RS03430	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
JMUB1235_RS03440	SM00851	MGS-like domain
JMUB1235_RS03440	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
JMUB1235_RS03440	SM01209	JMUB1235_RS03440
JMUB1235_RS03450	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03520	SM00420	helix_turn_helix, Deoxyribose operon repressor
JMUB1235_RS03520	SM01134	JMUB1235_RS03520
JMUB1235_RS03535	SM00047	Lysozyme subfamily 2
JMUB1235_RS03540	SM00047	Lysozyme subfamily 2
JMUB1235_RS03580	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03600	SM00954	Region found in RelA / SpoT proteins
JMUB1235_RS03605	SM00448	cheY-homologous receiver domain
JMUB1235_RS03605	SM00862	Transcriptional regulatory protein, C terminal
JMUB1235_RS03610	SM00387	Histidine kinase-like ATPases
JMUB1235_RS03610	SM00388	His Kinase A (phosphoacceptor) domain
JMUB1235_RS03660	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03660	SM00994	ClpX C4-type zinc finger
JMUB1235_RS03660	SM01086	C-terminal, D2-small domain, of ClpB protein
JMUB1235_RS03675	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03675	SM01086	C-terminal, D2-small domain, of ClpB protein
JMUB1235_RS03720	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
JMUB1235_RS03735	SM00062	Bacterial periplasmic substrate-binding proteins
JMUB1235_RS03745	SM00986	Uracil DNA glycosylase superfamily
JMUB1235_RS03745	SM00987	UreE urease accessory protein, C-terminal domain 
JMUB1235_RS03755	SM01207	JMUB1235_RS03755
JMUB1235_RS03760	SM00387	Histidine kinase-like ATPases
JMUB1235_RS03760	SM00433	TopoisomeraseII
JMUB1235_RS03765	SM00434	DNA Topoisomerase IV
JMUB1235_RS03790	SM00316	Ribosomal protein S1-like RNA-binding domain
JMUB1235_RS03805	SM00450	Rhodanese Homology Domain
JMUB1235_RS03870	SM00478	endonuclease III
JMUB1235_RS03870	SM00525	JMUB1235_RS03870
JMUB1235_RS03915	SM00028	Tetratricopeptide repeats
JMUB1235_RS03940	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03945	SM00849	Metallo-beta-lactamase superfamily
JMUB1235_RS03960	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS03970	SM00861	Transketolase, pyrimidine binding domain
JMUB1235_RS04035	SM00729	Elongator protein 3, MiaB family, Radical SAM
JMUB1235_RS04090	SM00838	Elongation factor G C-terminus
JMUB1235_RS04135	SM00342	helix_turn_helix, arabinose operon control protein
JMUB1235_RS04135	SM00448	cheY-homologous receiver domain
JMUB1235_RS04150	SM00465	GIY-YIG type nucleases (URI domain)
JMUB1235_RS04210	SM00448	cheY-homologous receiver domain
JMUB1235_RS04210	SM00862	Transcriptional regulatory protein, C terminal
JMUB1235_RS04215	SM00387	Histidine kinase-like ATPases
JMUB1235_RS04215	SM00388	His Kinase A (phosphoacceptor) domain
JMUB1235_RS04230	SM01260	JMUB1235_RS04230
JMUB1235_RS04245	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04280	SM00936	Penicillin-binding protein 5, C-terminal domain 
JMUB1235_RS04305	SM00905	Dihydroneopterin aldolase
JMUB1235_RS04320	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04340	SM00448	cheY-homologous receiver domain
JMUB1235_RS04355	SM00829	Enoylreductase
JMUB1235_RS04390	SM00881	CoA binding domain
JMUB1235_RS04405	SM01400	JMUB1235_RS04405
JMUB1235_RS04410	SM01118	JMUB1235_RS04410
JMUB1235_RS04415	SM00954	Region found in RelA / SpoT proteins
JMUB1235_RS04445	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04455	SM01240	JMUB1235_RS04455
JMUB1235_RS04490	SM00937	JMUB1235_RS04490
JMUB1235_RS04525	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04530	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04545	SM00434	DNA Topoisomerase IV
JMUB1235_RS04570	SM00046	Diacylglycerol kinase catalytic domain (presumed)
JMUB1235_RS04600	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
JMUB1235_RS04600	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
JMUB1235_RS04600	SM00493	JMUB1235_RS04600
JMUB1235_RS04665	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS04665	SM00895	JMUB1235_RS04665
JMUB1235_RS04715	SM00764	Citrate lyase ligase C-terminal domain
JMUB1235_RS04730	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS04735	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04735	SM00962	SRP54-type protein, GTPase domain
JMUB1235_RS04735	SM00963	SRP54-type protein, helical bundle domain
JMUB1235_RS04745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS04745	SM00866	JMUB1235_RS04745
JMUB1235_RS04765	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS04790	SM00155	Phospholipase D. Active site motifs.
JMUB1235_RS04810	SM00506	Appr-1"-p processing enzyme
JMUB1235_RS04865	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04895	SM00387	Histidine kinase-like ATPases
JMUB1235_RS04895	SM00388	His Kinase A (phosphoacceptor) domain
JMUB1235_RS04900	SM00448	cheY-homologous receiver domain
JMUB1235_RS04900	SM00862	Transcriptional regulatory protein, C terminal
JMUB1235_RS04920	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04925	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS04965	SM00904	Riboflavin kinase
JMUB1235_RS04995	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS05005	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS05060	SM00062	Bacterial periplasmic substrate-binding proteins
JMUB1235_RS05065	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS05100	SM00481	DNA polymerase alpha chain like domain
JMUB1235_RS05105	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS05110	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS05145	SM00354	helix_turn _helix lactose operon repressor
JMUB1235_RS05165	SM00354	helix_turn _helix lactose operon repressor
JMUB1235_RS05185	SM00632	JMUB1235_RS05185
JMUB1235_RS05185	SM00642	Alpha-amylase domain
JMUB1235_RS05185	SM01065	Starch binding domain
JMUB1235_RS05190	SM00642	Alpha-amylase domain
JMUB1235_RS05235	SM00487	DEAD-like helicases superfamily
JMUB1235_RS05235	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS05240	SM00062	Bacterial periplasmic substrate-binding proteins
JMUB1235_RS05240	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
JMUB1235_RS05245	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS05310	SM00363	S4 RNA-binding domain
JMUB1235_RS05370	SM00116	Domain in cystathionine beta-synthase and other proteins.
JMUB1235_RS05395	SM00364	Leucine-rich repeats, bacterial type
JMUB1235_RS05395	SM00365	Leucine-rich repeat, SDS22-like subfamily
JMUB1235_RS05395	SM00369	Leucine-rich repeats, typical (most populated) subfamily
JMUB1235_RS05410	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS05435	SM00487	DEAD-like helicases superfamily
JMUB1235_RS05435	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS05495	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS05500	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
JMUB1235_RS05530	SM00363	S4 RNA-binding domain
JMUB1235_RS05575	SM00849	Metallo-beta-lactamase superfamily
JMUB1235_RS05580	SM00278	Helix-hairpin-helix DNA-binding motif class 1
JMUB1235_RS05585	SM00563	Phosphate acyltransferases
JMUB1235_RS05605	SM00487	DEAD-like helicases superfamily
JMUB1235_RS05605	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS05635	SM00493	JMUB1235_RS05635
JMUB1235_RS05660	SM00855	Phosphoglycerate mutase family
JMUB1235_RS05675	SM00411	bacterial (prokaryotic) histone like domain
JMUB1235_RS05710	SM00363	S4 RNA-binding domain
JMUB1235_RS05745	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS05760	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS05760	SM01086	C-terminal, D2-small domain, of ClpB protein
JMUB1235_RS05785	SM00363	S4 RNA-binding domain
JMUB1235_RS05805	SM00864	Tubulin/FtsZ family, GTPase domain
JMUB1235_RS05805	SM00865	Tubulin/FtsZ family, C-terminal domain
JMUB1235_RS05810	SM00842	Cell division protein FtsA
JMUB1235_RS05835	SM00838	Elongation factor G C-terminus
JMUB1235_RS05840	SM00450	Rhodanese Homology Domain
JMUB1235_RS05875	SM00354	helix_turn _helix lactose operon repressor
JMUB1235_RS05930	SM00419	helix_turn_helix, cAMP Regulatory protein
JMUB1235_RS05940	SM00873	B3/4 domain
JMUB1235_RS05950	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JMUB1235_RS05950	SM00387	Histidine kinase-like ATPases
JMUB1235_RS05955	SM00342	helix_turn_helix, arabinose operon control protein
JMUB1235_RS05955	SM00448	cheY-homologous receiver domain
JMUB1235_RS06005	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JMUB1235_RS06005	SM00487	DEAD-like helicases superfamily
JMUB1235_RS06090	SM00342	helix_turn_helix, arabinose operon control protein
JMUB1235_RS06090	SM00448	cheY-homologous receiver domain
JMUB1235_RS06095	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JMUB1235_RS06135	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS06140	SM01149	JMUB1235_RS06140
JMUB1235_RS06145	SM00872	Alpha mannosidase, middle domain
JMUB1235_RS06250	SM00487	DEAD-like helicases superfamily
JMUB1235_RS06250	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS06265	SM00316	Ribosomal protein S1-like RNA-binding domain
JMUB1235_RS06275	SM00421	helix_turn_helix, Lux Regulon
JMUB1235_RS06275	SM00448	cheY-homologous receiver domain
JMUB1235_RS06280	SM00387	Histidine kinase-like ATPases
JMUB1235_RS06290	SM00220	Serine/Threonine protein kinases, catalytic domain
JMUB1235_RS06290	SM00740	JMUB1235_RS06290
JMUB1235_RS06295	SM00331	Sigma factor PP2C-like phosphatases
JMUB1235_RS06295	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
JMUB1235_RS06310	SM00487	DEAD-like helicases superfamily
JMUB1235_RS06310	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS06315	SM01409	JMUB1235_RS06315
JMUB1235_RS06320	SM00072	Guanylate kinase homologues.
JMUB1235_RS06325	SM00322	K homology RNA-binding domain
JMUB1235_RS06325	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JMUB1235_RS06345	SM00882	Coenzyme A transferase
JMUB1235_RS06370	SM00981	JMUB1235_RS06370
JMUB1235_RS06430	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS06440	SM00487	DEAD-like helicases superfamily
JMUB1235_RS06440	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS06450	SM00740	JMUB1235_RS06450
JMUB1235_RS06485	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS06495	SM00861	Transketolase, pyrimidine binding domain
JMUB1235_RS06600	SM01133	JMUB1235_RS06600
JMUB1235_RS06635	SM00420	helix_turn_helix, Deoxyribose operon repressor
JMUB1235_RS06635	SM01134	JMUB1235_RS06635
JMUB1235_RS06685	SM00322	K homology RNA-binding domain
JMUB1235_RS06715	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS06790	SM00878	Biotin carboxylase C-terminal domain
JMUB1235_RS06805	SM00825	Beta-ketoacyl synthase
JMUB1235_RS06810	SM00822	JMUB1235_RS06810
JMUB1235_RS06815	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
JMUB1235_RS06835	SM00347	helix_turn_helix multiple antibiotic resistance protein
JMUB1235_RS06845	SM00271	DnaJ molecular chaperone homology domain
JMUB1235_RS06865	SM00047	Lysozyme subfamily 2
JMUB1235_RS06875	SM00855	Phosphoglycerate mutase family
JMUB1235_RS06890	SM00845	GatB domain
JMUB1235_RS06940	SM00870	JMUB1235_RS06940
JMUB1235_RS06950	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS06955	SM00487	DEAD-like helicases superfamily
JMUB1235_RS06955	SM00490	helicase superfamily c-terminal domain
JMUB1235_RS06965	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS06980	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS06985	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS06990	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07010	SM00365	Leucine-rich repeat, SDS22-like subfamily
JMUB1235_RS07010	SM00369	Leucine-rich repeats, typical (most populated) subfamily
JMUB1235_RS07010	SM00725	NEAr Transporter domain
JMUB1235_RS07020	SM01005	Alanine racemase, C-terminal domain
JMUB1235_RS07030	SM00957	SecA DEAD-like domain
JMUB1235_RS07030	SM00958	SecA preprotein cross-linking domain
JMUB1235_RS07065	SM00640	Glycosyl hydrolases family 32
JMUB1235_RS07070	SM00354	helix_turn _helix lactose operon repressor
JMUB1235_RS07085	SM00841	Elongation factor P, C-terminal
JMUB1235_RS07085	SM01185	JMUB1235_RS07085
JMUB1235_RS07100	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07135	SM00478	endonuclease III
JMUB1235_RS07140	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS07150	SM00014	Acid phosphatase homologues
JMUB1235_RS07155	SM00463	Small MutS-related domain
JMUB1235_RS07155	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
JMUB1235_RS07155	SM00534	ATPase domain of DNA mismatch repair MUTS family
JMUB1235_RS07180	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07235	SM00419	helix_turn_helix, cAMP Regulatory protein
JMUB1235_RS07240	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
JMUB1235_RS07240	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
JMUB1235_RS07245	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS07250	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS07260	SM00422	helix_turn_helix, mercury resistance
JMUB1235_RS07265	SM00479	JMUB1235_RS07265
JMUB1235_RS07280	SM01133	JMUB1235_RS07280
JMUB1235_RS07295	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS07325	SM00849	Metallo-beta-lactamase superfamily
JMUB1235_RS07330	SM01230	JMUB1235_RS07330
JMUB1235_RS07335	SM00422	helix_turn_helix, mercury resistance
JMUB1235_RS07355	SM00244	prohibitin homologues
JMUB1235_RS07360	SM01120	JMUB1235_RS07360
JMUB1235_RS07360	SM01121	JMUB1235_RS07360
JMUB1235_RS07480	SM00487	DEAD-like helicases superfamily
JMUB1235_RS07500	SM00421	helix_turn_helix, Lux Regulon
JMUB1235_RS07500	SM00448	cheY-homologous receiver domain
JMUB1235_RS07515	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07545	SM01133	JMUB1235_RS07545
JMUB1235_RS07565	SM00420	helix_turn_helix, Deoxyribose operon repressor
JMUB1235_RS07565	SM01134	JMUB1235_RS07565
JMUB1235_RS07595	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS07615	SM00967	RNA 2'-O ribose methyltransferase substrate binding
JMUB1235_RS07630	SM00840	JMUB1235_RS07630
JMUB1235_RS07655	SM00316	Ribosomal protein S1-like RNA-binding domain
JMUB1235_RS07655	SM00322	K homology RNA-binding domain
JMUB1235_RS07680	SM01387	JMUB1235_RS07680
JMUB1235_RS07705	SM00347	helix_turn_helix multiple antibiotic resistance protein
JMUB1235_RS07710	SM00479	JMUB1235_RS07710
JMUB1235_RS07710	SM00481	DNA polymerase alpha chain like domain
JMUB1235_RS07735	SM01323	JMUB1235_RS07735
JMUB1235_RS07745	SM00642	Alpha-amylase domain
JMUB1235_RS07755	SM00642	Alpha-amylase domain
JMUB1235_RS07760	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07780	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
JMUB1235_RS07780	SM00954	Region found in RelA / SpoT proteins
JMUB1235_RS07830	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07880	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07885	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07950	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
JMUB1235_RS07950	SM00387	Histidine kinase-like ATPases
JMUB1235_RS07950	SM00388	His Kinase A (phosphoacceptor) domain
JMUB1235_RS07955	SM00448	cheY-homologous receiver domain
JMUB1235_RS07955	SM00862	Transcriptional regulatory protein, C terminal
JMUB1235_RS07965	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS07990	SM00327	von Willebrand factor (vWF) type A domain
JMUB1235_RS08035	SM00892	DNA/RNA non-specific endonuclease
JMUB1235_RS08080	SM00420	helix_turn_helix, Deoxyribose operon repressor
JMUB1235_RS08080	SM01134	JMUB1235_RS08080
JMUB1235_RS08140	SM00530	Helix-turn-helix XRE-family like proteins 
JMUB1235_RS08150	SM00883	Chaperonin 10 Kd subunit
JMUB1235_RS08155	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS08155	SM01086	C-terminal, D2-small domain, of ClpB protein
JMUB1235_RS08165	SM00357	Cold shock protein domain
JMUB1235_RS08195	SM01221	JMUB1235_RS08195
JMUB1235_RS08195	SM01222	JMUB1235_RS08195
JMUB1235_RS08230	SM00028	Tetratricopeptide repeats
JMUB1235_RS08230	SM01043	Bacterial transcriptional activator domain
JMUB1235_RS08250	SM00642	Alpha-amylase domain
JMUB1235_RS08260	SM00345	helix_turn_helix gluconate operon transcriptional repressor
JMUB1235_RS08260	SM00866	JMUB1235_RS08260
JMUB1235_RS08325	SM00732	Likely ribonuclease with RNase H fold.
JMUB1235_RS08340	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS08345	SM00852	Probable molybdopterin binding domain
JMUB1235_RS08355	SM00278	Helix-hairpin-helix DNA-binding motif class 1
JMUB1235_RS08365	SM00853	MutL C terminal dimerisation domain
JMUB1235_RS08365	SM01340	JMUB1235_RS08365
JMUB1235_RS08370	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
JMUB1235_RS08370	SM00534	ATPase domain of DNA mismatch repair MUTS family
JMUB1235_RS08385	SM00836	DALR anticodon binding domain
JMUB1235_RS08385	SM01016	Arginyl tRNA synthetase N terminal dom
JMUB1235_RS08440	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
JMUB1235_RS08500	SM00363	S4 RNA-binding domain
JMUB1235_RS08500	SM01390	JMUB1235_RS08500
JMUB1235_RS08535	SM01228	JMUB1235_RS08535
JMUB1235_RS08570	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS08575	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS08615	SM00116	Domain in cystathionine beta-synthase and other proteins.
JMUB1235_RS08615	SM01240	JMUB1235_RS08615
JMUB1235_RS08630	SM00382	ATPases associated with a variety of cellular activities
JMUB1235_RS08675	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
JMUB1235_RS08680	SM00470	ParB-like nuclease domain
