locus-tag class description SPYJRS4_RS00005 PF00308 Bacterial dnaA protein SPYJRS4_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SPYJRS4_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SPYJRS4_RS00010 PF02767 DNA polymerase III beta subunit, central domain SPYJRS4_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SPYJRS4_RS00020 PF01926 50S ribosome-binding GTPase SPYJRS4_RS00020 PF06071 Protein of unknown function (DUF933) SPYJRS4_RS00025 PF01195 Peptidyl-tRNA hydrolase SPYJRS4_RS00030 PF17757 UvrB interaction domain SPYJRS4_RS00030 PF02559 CarD-like/TRCF domain SPYJRS4_RS00030 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS00030 PF03461 TRCF domain SPYJRS4_RS00030 PF00270 DEAD/DEAH box helicase SPYJRS4_RS00035 PF01479 S4 domain SPYJRS4_RS00050 PF01171 PP-loop family SPYJRS4_RS00055 PF00156 Phosphoribosyl transferase domain SPYJRS4_RS00060 PF01434 Peptidase family M41 SPYJRS4_RS00060 PF06480 FtsH Extracellular SPYJRS4_RS00060 PF00004 ATPase family associated with various cellular activities (AAA) SPYJRS4_RS00060 PF17862 AAA+ lid domain SPYJRS4_RS00065 PF13936 Helix-turn-helix domain SPYJRS4_RS00070 PF13520 Amino acid permease SPYJRS4_RS00245 PF01476 LysM domain SPYJRS4_RS00245 PF05257 CHAP domain SPYJRS4_RS00250 PF14572 Phosphoribosyl synthetase-associated domain SPYJRS4_RS00250 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPYJRS4_RS00255 PF11967 Recombination protein O N terminal SPYJRS4_RS00255 PF02565 Recombination protein O C terminal SPYJRS4_RS00260 PF02504 Fatty acid synthesis protein SPYJRS4_RS00265 PF00550 Phosphopantetheine attachment site SPYJRS4_RS00270 PF01259 SAICAR synthetase SPYJRS4_RS00275 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SPYJRS4_RS00275 PF02769 AIR synthase related protein, C-terminal domain SPYJRS4_RS00275 PF00586 AIR synthase related protein, N-terminal domain SPYJRS4_RS00280 PF00156 Phosphoribosyl transferase domain SPYJRS4_RS00280 PF13537 Glutamine amidotransferase domain SPYJRS4_RS00285 PF00586 AIR synthase related protein, N-terminal domain SPYJRS4_RS00285 PF02769 AIR synthase related protein, C-terminal domain SPYJRS4_RS00290 PF00551 Formyl transferase SPYJRS4_RS00295 PF01808 AICARFT/IMPCHase bienzyme SPYJRS4_RS00295 PF02142 MGS-like domain SPYJRS4_RS00305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SPYJRS4_RS00305 PF02844 Phosphoribosylglycinamide synthetase, N domain SPYJRS4_RS00305 PF02843 Phosphoribosylglycinamide synthetase, C domain SPYJRS4_RS00310 PF00731 AIR carboxylase SPYJRS4_RS00315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SPYJRS4_RS00315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SPYJRS4_RS00315 PF02222 ATP-grasp domain SPYJRS4_RS00325 PF00206 Lyase SPYJRS4_RS00325 PF10397 Adenylosuccinate lyase C-terminus SPYJRS4_RS00335 PF17864 RuvB AAA lid domain SPYJRS4_RS00335 PF05491 RuvB C-terminal winged helix domain SPYJRS4_RS00335 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPYJRS4_RS00340 PF01451 Low molecular weight phosphotyrosine protein phosphatase SPYJRS4_RS00350 PF01757 Acyltransferase family SPYJRS4_RS00355 PF00171 Aldehyde dehydrogenase family SPYJRS4_RS00355 PF00465 Iron-containing alcohol dehydrogenase SPYJRS4_RS00360 PF00107 Zinc-binding dehydrogenase SPYJRS4_RS00360 PF08240 Alcohol dehydrogenase GroES-like domain SPYJRS4_RS00365 PF01554 MatE SPYJRS4_RS00370 PF00338 Ribosomal protein S10p/S20e SPYJRS4_RS00375 PF00297 Ribosomal protein L3 SPYJRS4_RS00380 PF00573 Ribosomal protein L4/L1 family SPYJRS4_RS00385 PF00276 Ribosomal protein L23 SPYJRS4_RS00390 PF00181 Ribosomal Proteins L2, RNA binding domain SPYJRS4_RS00390 PF03947 Ribosomal Proteins L2, C-terminal domain SPYJRS4_RS00395 PF00203 Ribosomal protein S19 SPYJRS4_RS00400 PF00237 Ribosomal protein L22p/L17e SPYJRS4_RS00405 PF07650 KH domain SPYJRS4_RS00405 PF00189 Ribosomal protein S3, C-terminal domain SPYJRS4_RS00410 PF00252 Ribosomal protein L16p/L10e SPYJRS4_RS00415 PF00831 Ribosomal L29 protein SPYJRS4_RS00420 PF00366 Ribosomal protein S17 SPYJRS4_RS00425 PF00238 Ribosomal protein L14p/L23e SPYJRS4_RS00430 PF00467 KOW motif SPYJRS4_RS00430 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SPYJRS4_RS00435 PF00281 Ribosomal protein L5 SPYJRS4_RS00435 PF00673 ribosomal L5P family C-terminus SPYJRS4_RS00440 PF00253 Ribosomal protein S14p/S29e SPYJRS4_RS00445 PF00410 Ribosomal protein S8 SPYJRS4_RS00450 PF00347 Ribosomal protein L6 SPYJRS4_RS00455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SPYJRS4_RS00460 PF00333 Ribosomal protein S5, N-terminal domain SPYJRS4_RS00460 PF03719 Ribosomal protein S5, C-terminal domain SPYJRS4_RS00465 PF00327 Ribosomal protein L30p/L7e SPYJRS4_RS00470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SPYJRS4_RS00475 PF00344 SecY translocase SPYJRS4_RS00485 PF01176 Translation initiation factor 1A / IF-1 SPYJRS4_RS00490 PF00416 Ribosomal protein S13/S18 SPYJRS4_RS00495 PF00411 Ribosomal protein S11 SPYJRS4_RS00500 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SPYJRS4_RS00500 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SPYJRS4_RS00500 PF01000 RNA polymerase Rpb3/RpoA insert domain SPYJRS4_RS00505 PF01196 Ribosomal protein L17 SPYJRS4_RS00510 PF13936 Helix-turn-helix domain SPYJRS4_RS00600 PF00288 GHMP kinases N terminal domain SPYJRS4_RS00600 PF08544 GHMP kinases C terminal SPYJRS4_RS00605 PF00288 GHMP kinases N terminal domain SPYJRS4_RS00605 PF08544 GHMP kinases C terminal SPYJRS4_RS00610 PF01047 MarR family SPYJRS4_RS00615 PF00005 ABC transporter SPYJRS4_RS00620 PF00950 ABC 3 transport family SPYJRS4_RS00630 PF00579 tRNA synthetases class I (W and Y) SPYJRS4_RS00630 PF01479 S4 domain SPYJRS4_RS00635 PF00912 Transglycosylase SPYJRS4_RS00635 PF00905 Penicillin binding protein transpeptidase domain SPYJRS4_RS00640 PF00562 RNA polymerase Rpb2, domain 6 SPYJRS4_RS00640 PF04560 RNA polymerase Rpb2, domain 7 SPYJRS4_RS00640 PF04563 RNA polymerase beta subunit SPYJRS4_RS00640 PF10385 RNA polymerase beta subunit external 1 domain SPYJRS4_RS00640 PF04561 RNA polymerase Rpb2, domain 2 SPYJRS4_RS00640 PF04565 RNA polymerase Rpb2, domain 3 SPYJRS4_RS00645 PF05000 RNA polymerase Rpb1, domain 4 SPYJRS4_RS00645 PF00623 RNA polymerase Rpb1, domain 2 SPYJRS4_RS00645 PF04997 RNA polymerase Rpb1, domain 1 SPYJRS4_RS00645 PF04998 RNA polymerase Rpb1, domain 5 SPYJRS4_RS00645 PF04983 RNA polymerase Rpb1, domain 3 SPYJRS4_RS00655 PF00437 Type II/IV secretion system protein SPYJRS4_RS00660 PF00482 Type II secretion system (T2SS), protein F SPYJRS4_RS00665 PF07963 Prokaryotic N-terminal methylation motif SPYJRS4_RS00695 PF00871 Acetokinase family SPYJRS4_RS00705 PF03807 NADP oxidoreductase coenzyme F420-dependent SPYJRS4_RS00705 PF14748 Pyrroline-5-carboxylate reductase dimerisation SPYJRS4_RS00710 PF05343 M42 glutamyl aminopeptidase SPYJRS4_RS00720 PF00085 Thioredoxin SPYJRS4_RS00725 PF14794 Domain of unknown function (DUF4479) SPYJRS4_RS00725 PF01588 Putative tRNA binding domain SPYJRS4_RS00730 PF00436 Single-strand binding protein family SPYJRS4_RS00740 PF01712 Deoxynucleoside kinase SPYJRS4_RS00745 PF01207 Dihydrouridine synthase (Dus) SPYJRS4_RS00750 PF01430 Hsp33 protein SPYJRS4_RS00760 PF08341 Thioester domain SPYJRS4_RS00760 PF17802 Prealbumin-like fold domain SPYJRS4_RS00770 PF18002 T6 antigen Ig like domain SPYJRS4_RS00770 PF16569 Gram-positive pilin backbone subunit 2, Cna-B-like domain SPYJRS4_RS00770 PF00746 LPXTG cell wall anchor motif SPYJRS4_RS00770 PF17802 Prealbumin-like fold domain SPYJRS4_RS00785 PF02667 Short chain fatty acid transporter SPYJRS4_RS00795 PF02803 Thiolase, C-terminal domain SPYJRS4_RS00795 PF00108 Thiolase, N-terminal domain SPYJRS4_RS00800 PF01144 Coenzyme A transferase SPYJRS4_RS00805 PF01144 Coenzyme A transferase SPYJRS4_RS00815 PF01042 Endoribonuclease L-PSP SPYJRS4_RS00830 PF01496 V-type ATPase 116kDa subunit family SPYJRS4_RS00835 PF00137 ATP synthase subunit C SPYJRS4_RS00845 PF01992 ATP synthase (C/AC39) subunit SPYJRS4_RS00850 PF01990 ATP synthase (F/14-kDa) subunit SPYJRS4_RS00855 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPYJRS4_RS00855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPYJRS4_RS00855 PF16886 ATPsynthase alpha/beta subunit N-term extension SPYJRS4_RS00860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPYJRS4_RS00860 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPYJRS4_RS00865 PF01813 ATP synthase subunit D SPYJRS4_RS00880 PF00709 Adenylosuccinate synthetase SPYJRS4_RS00885 PF02608 ABC transporter substrate-binding protein PnrA-like SPYJRS4_RS00890 PF00467 KOW motif SPYJRS4_RS00890 PF02357 Transcription termination factor nusG SPYJRS4_RS00905 PF01289 Thiol-activated cytolysin SPYJRS4_RS00905 PF17440 Thiol-activated cytolysin beta sandwich domain SPYJRS4_RS00920 PF01053 Cys/Met metabolism PLP-dependent enzyme SPYJRS4_RS00925 PF00133 tRNA synthetases class I (I, L, M and V) SPYJRS4_RS00925 PF13603 Leucyl-tRNA synthetase, Domain 2 SPYJRS4_RS00925 PF08264 Anticodon-binding domain of tRNA SPYJRS4_RS00925 PF09334 tRNA synthetases class I (M) SPYJRS4_RS00930 PF03611 PTS system sugar-specific permease component SPYJRS4_RS00935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS00940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPYJRS4_RS00945 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPYJRS4_RS00950 PF01261 Xylose isomerase-like TIM barrel SPYJRS4_RS00955 PF00596 Class II Aldolase and Adducin N-terminal domain SPYJRS4_RS00970 PF00571 CBS domain SPYJRS4_RS00970 PF00005 ABC transporter SPYJRS4_RS00975 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS00980 PF01367 5'-3' exonuclease, C-terminal SAM fold SPYJRS4_RS00980 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SPYJRS4_RS00980 PF00476 DNA polymerase family A SPYJRS4_RS00990 PF01475 Ferric uptake regulator family SPYJRS4_RS01000 PF01702 Queuine tRNA-ribosyltransferase SPYJRS4_RS01005 PF02632 BioY family SPYJRS4_RS01010 PF12706 Beta-lactamase superfamily domain SPYJRS4_RS01015 PF14437 MafB19-like deaminase SPYJRS4_RS01035 PF00342 Phosphoglucose isomerase SPYJRS4_RS01045 PF01694 Rhomboid family SPYJRS4_RS01050 PF00483 Nucleotidyl transferase SPYJRS4_RS01055 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SPYJRS4_RS01055 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SPYJRS4_RS01065 PF00664 ABC transporter transmembrane region SPYJRS4_RS01065 PF00005 ABC transporter SPYJRS4_RS01070 PF00664 ABC transporter transmembrane region SPYJRS4_RS01070 PF00005 ABC transporter SPYJRS4_RS01075 PF02677 Epoxyqueuosine reductase QueH SPYJRS4_RS01080 PF00692 dUTPase SPYJRS4_RS01085 PF18073 Rubredoxin metal binding domain SPYJRS4_RS01090 PF00484 Carbonic anhydrase SPYJRS4_RS01095 PF01987 Mitochondrial biogenesis AIM24 SPYJRS4_RS01100 PF00749 tRNA synthetases class I (E and Q), catalytic domain SPYJRS4_RS01105 PF17203 Single cache domain 3 SPYJRS4_RS01105 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPYJRS4_RS01105 PF00989 PAS fold SPYJRS4_RS01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS01120 PF00825 Ribonuclease P SPYJRS4_RS01125 PF02096 60Kd inner membrane protein SPYJRS4_RS01130 PF14804 Jag N-terminus SPYJRS4_RS01130 PF01424 R3H domain SPYJRS4_RS01135 PF00468 Ribosomal protein L34 SPYJRS4_RS01140 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPYJRS4_RS01150 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS01155 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS01165 PF00701 Dihydrodipicolinate synthetase family SPYJRS4_RS01170 PF00480 ROK family SPYJRS4_RS01180 PF01026 TatD related DNase SPYJRS4_RS01185 PF13331 Domain of unknown function (DUF4093) SPYJRS4_RS01190 PF00398 Ribosomal RNA adenine dimethylase SPYJRS4_RS01195 PF03193 RsgA GTPase SPYJRS4_RS01195 PF16745 RsgA N-terminal domain SPYJRS4_RS01200 PF00834 Ribulose-phosphate 3 epimerase family SPYJRS4_RS01205 PF04263 Thiamin pyrophosphokinase, catalytic domain SPYJRS4_RS01205 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SPYJRS4_RS01210 PF02646 RmuC family SPYJRS4_RS01215 PF01966 HD domain SPYJRS4_RS01220 PF00156 Phosphoribosyl transferase domain SPYJRS4_RS01220 PF09182 Bacterial purine repressor, N-terminal SPYJRS4_RS01230 PF00164 Ribosomal protein S12/S23 SPYJRS4_RS01235 PF00177 Ribosomal protein S7p/S5e SPYJRS4_RS01240 PF00009 Elongation factor Tu GTP binding domain SPYJRS4_RS01240 PF03764 Elongation factor G, domain IV SPYJRS4_RS01240 PF14492 Elongation Factor G, domain II SPYJRS4_RS01240 PF03144 Elongation factor Tu domain 2 SPYJRS4_RS01240 PF00679 Elongation factor G C-terminus SPYJRS4_RS01245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SPYJRS4_RS01245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SPYJRS4_RS01250 PF00005 ABC transporter SPYJRS4_RS01255 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS01265 PF02673 Bacitracin resistance protein BacA SPYJRS4_RS01270 PF05389 Negative regulator of genetic competence (MecA) SPYJRS4_RS01275 PF00953 Glycosyl transferase family 4 SPYJRS4_RS01280 PF00005 ABC transporter SPYJRS4_RS01285 PF01458 Uncharacterized protein family (UPF0051) SPYJRS4_RS01290 PF00266 Aminotransferase class-V SPYJRS4_RS01295 PF01592 NifU-like N terminal domain SPYJRS4_RS01300 PF01458 Uncharacterized protein family (UPF0051) SPYJRS4_RS01305 PF00768 D-alanyl-D-alanine carboxypeptidase SPYJRS4_RS01305 PF07943 Penicillin-binding protein 5, C-terminal domain SPYJRS4_RS01310 PF00768 D-alanyl-D-alanine carboxypeptidase SPYJRS4_RS01310 PF07943 Penicillin-binding protein 5, C-terminal domain SPYJRS4_RS01315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPYJRS4_RS01320 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS01325 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS01325 PF12911 N-terminal TM domain of oligopeptide transport permease C SPYJRS4_RS01330 PF00005 ABC transporter SPYJRS4_RS01330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPYJRS4_RS01335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPYJRS4_RS01335 PF00005 ABC transporter SPYJRS4_RS01385 PF01926 50S ribosome-binding GTPase SPYJRS4_RS01390 PF01985 CRS1 / YhbY (CRM) domain SPYJRS4_RS01395 PF01467 Cytidylyltransferase-like SPYJRS4_RS01400 PF01966 HD domain SPYJRS4_RS01410 PF13649 Methyltransferase domain SPYJRS4_RS01415 PF05636 HIGH Nucleotidyl Transferase SPYJRS4_RS01420 PF01709 Transcriptional regulator SPYJRS4_RS01425 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPYJRS4_RS01430 PF03180 NLPA lipoprotein SPYJRS4_RS01435 PF00005 ABC transporter SPYJRS4_RS01435 PF09383 NIL domain SPYJRS4_RS01440 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS01445 PF05525 Branched-chain amino acid transport protein SPYJRS4_RS01450 PF00375 Sodium:dicarboxylate symporter family SPYJRS4_RS01455 PF02080 TrkA-C domain SPYJRS4_RS01455 PF02254 TrkA-N domain SPYJRS4_RS01460 PF02386 Cation transport protein SPYJRS4_RS01465 PF02527 rRNA small subunit methyltransferase G SPYJRS4_RS01470 PF04011 LemA family SPYJRS4_RS01475 PF01435 Peptidase family M48 SPYJRS4_RS01485 PF00486 Transcriptional regulatory protein, C terminal SPYJRS4_RS01485 PF00072 Response regulator receiver domain SPYJRS4_RS01490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS01490 PF18719 ArlS sensor domain SPYJRS4_RS01490 PF00512 His Kinase A (phospho-acceptor) domain SPYJRS4_RS01495 PF03477 ATP cone domain SPYJRS4_RS01505 PF01695 IstB-like ATP binding protein SPYJRS4_RS01505 PF07319 Primosomal protein DnaI N-terminus SPYJRS4_RS01510 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SPYJRS4_RS01510 PF01926 50S ribosome-binding GTPase SPYJRS4_RS01515 PF12419 SNF2 Helicase protein SPYJRS4_RS01515 PF00176 SNF2 family N-terminal domain SPYJRS4_RS01515 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS01525 PF01225 Mur ligase family, catalytic domain SPYJRS4_RS01525 PF02875 Mur ligase family, glutamate ligase domain SPYJRS4_RS01525 PF08245 Mur ligase middle domain SPYJRS4_RS01535 PF02618 YceG-like family SPYJRS4_RS01540 PF03449 Transcription elongation factor, N-terminal SPYJRS4_RS01540 PF01272 Transcription elongation factor, GreA/GreB, C-term SPYJRS4_RS01545 PF02096 60Kd inner membrane protein SPYJRS4_RS01550 PF00708 Acylphosphatase SPYJRS4_RS01555 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPYJRS4_RS01555 PF00588 SpoU rRNA Methylase family SPYJRS4_RS01565 PF01027 Inhibitor of apoptosis-promoting Bax1 SPYJRS4_RS01570 PF03672 Uncharacterised protein family (UPF0154) SPYJRS4_RS01575 PF01177 Asp/Glu/Hydantoin racemase SPYJRS4_RS01580 PF01725 Ham1 family SPYJRS4_RS01600 PF02616 Segregation and condensation protein ScpA SPYJRS4_RS01605 PF04079 Segregation and condensation complex subunit ScpB SPYJRS4_RS01610 PF00849 RNA pseudouridylate synthase SPYJRS4_RS01610 PF01479 S4 domain SPYJRS4_RS01615 PF01809 Putative membrane protein insertion efficiency factor SPYJRS4_RS01620 PF00588 SpoU rRNA Methylase family SPYJRS4_RS01625 PF12822 ECF transporter, substrate-specific component SPYJRS4_RS01630 PF01569 PAP2 superfamily SPYJRS4_RS01635 PF16199 Radical_SAM C-terminal domain SPYJRS4_RS01635 PF04055 Radical SAM superfamily SPYJRS4_RS01640 PF06962 Putative rRNA methylase SPYJRS4_RS01645 PF00571 CBS domain SPYJRS4_RS01645 PF03471 Transporter associated domain SPYJRS4_RS01645 PF01595 Cyclin M transmembrane N-terminal domain SPYJRS4_RS01650 PF04055 Radical SAM superfamily SPYJRS4_RS01655 PF01368 DHH family SPYJRS4_RS01655 PF02833 DHHA2 domain SPYJRS4_RS01665 PF01032 FecCD transport family SPYJRS4_RS01670 PF01032 FecCD transport family SPYJRS4_RS01675 PF01497 Periplasmic binding protein SPYJRS4_RS01680 PF00005 ABC transporter SPYJRS4_RS01685 PF08245 Mur ligase middle domain SPYJRS4_RS01685 PF02875 Mur ligase family, glutamate ligase domain SPYJRS4_RS01690 PF01943 Polysaccharide biosynthesis protein SPYJRS4_RS01690 PF14667 Polysaccharide biosynthesis C-terminal domain SPYJRS4_RS01700 PF00574 Clp protease SPYJRS4_RS01705 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SPYJRS4_RS01710 PF02223 Thymidylate kinase SPYJRS4_RS01715 PF09115 DNA polymerase III, delta subunit, C terminal SPYJRS4_RS01725 PF06156 Initiation control protein YabA SPYJRS4_RS01730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SPYJRS4_RS01740 PF03932 CutC family SPYJRS4_RS01745 PF03960 ArsC family SPYJRS4_RS01750 PF03372 Endonuclease/Exonuclease/phosphatase family SPYJRS4_RS01760 PF01070 FMN-dependent dehydrogenase SPYJRS4_RS01765 PF02225 PA domain SPYJRS4_RS01765 PF00746 LPXTG cell wall anchor motif SPYJRS4_RS01765 PF06280 Fn3-like domain SPYJRS4_RS01765 PF00082 Subtilase family SPYJRS4_RS01775 PF09334 tRNA synthetases class I (M) SPYJRS4_RS01775 PF01588 Putative tRNA binding domain SPYJRS4_RS01780 PF00268 Ribonucleotide reductase, small chain SPYJRS4_RS01785 PF07972 NrdI Flavodoxin like SPYJRS4_RS01790 PF02867 Ribonucleotide reductase, barrel domain SPYJRS4_RS01790 PF00317 Ribonucleotide reductase, all-alpha domain SPYJRS4_RS01790 PF08343 Ribonucleotide reductase N-terminal SPYJRS4_RS01795 PF03496 ADP-ribosyltransferase exoenzyme SPYJRS4_RS01825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPYJRS4_RS01825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPYJRS4_RS01830 PF07690 Major Facilitator Superfamily SPYJRS4_RS01835 PF12804 MobA-like NTP transferase domain SPYJRS4_RS01835 PF00132 Bacterial transferase hexapeptide (six repeats) SPYJRS4_RS01840 PF00293 NUDIX domain SPYJRS4_RS01850 PF01048 Phosphorylase superfamily SPYJRS4_RS01865 PF01297 Zinc-uptake complex component A periplasmic SPYJRS4_RS01870 PF00005 ABC transporter SPYJRS4_RS01875 PF00950 ABC 3 transport family SPYJRS4_RS01880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPYJRS4_RS01885 PF01580 FtsK/SpoIIIE family SPYJRS4_RS01885 PF09397 Ftsk gamma domain SPYJRS4_RS01885 PF17854 FtsK alpha domain SPYJRS4_RS01900 PF13936 Helix-turn-helix domain SPYJRS4_RS01905 PF00298 Ribosomal protein L11, RNA binding domain SPYJRS4_RS01905 PF03946 Ribosomal protein L11, N-terminal domain SPYJRS4_RS01910 PF00687 Ribosomal protein L1p/L10e family SPYJRS4_RS01915 PF13936 Helix-turn-helix domain SPYJRS4_RS01920 PF00696 Amino acid kinase family SPYJRS4_RS01925 PF01765 Ribosome recycling factor SPYJRS4_RS01935 PF01625 Peptide methionine sulfoxide reductase SPYJRS4_RS01940 PF06855 YozE SAM-like fold SPYJRS4_RS01950 PF06100 MCRA family SPYJRS4_RS01955 PF02562 PhoH-like protein SPYJRS4_RS01960 PF03167 Uracil DNA glycosylase superfamily SPYJRS4_RS01965 PF02130 Uncharacterized protein family UPF0054 SPYJRS4_RS01970 PF01219 Prokaryotic diacylglycerol kinase SPYJRS4_RS01975 PF01926 50S ribosome-binding GTPase SPYJRS4_RS01975 PF07650 KH domain SPYJRS4_RS01995 PF00872 Transposase, Mutator family SPYJRS4_RS02000 PF00872 Transposase, Mutator family SPYJRS4_RS02060 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SPYJRS4_RS02060 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SPYJRS4_RS02060 PF06827 Zinc finger found in FPG and IleRS SPYJRS4_RS02065 PF01121 Dephospho-CoA kinase SPYJRS4_RS02075 PF07690 Major Facilitator Superfamily SPYJRS4_RS02075 PF00083 Sugar (and other) transporter SPYJRS4_RS02085 PF17876 Cold shock domain SPYJRS4_RS02085 PF08206 Ribonuclease B OB domain SPYJRS4_RS02085 PF00575 S1 RNA binding domain SPYJRS4_RS02085 PF00773 RNB domain SPYJRS4_RS02090 PF01668 SmpB protein SPYJRS4_RS02100 PF01470 Pyroglutamyl peptidase SPYJRS4_RS02115 PF00535 Glycosyl transferase family 2 SPYJRS4_RS02120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPYJRS4_RS02125 PF00881 Nitroreductase family SPYJRS4_RS02130 PF00557 Metallopeptidase family M24 SPYJRS4_RS02130 PF01321 Creatinase/Prolidase N-terminal domain SPYJRS4_RS02135 PF00356 Bacterial regulatory proteins, lacI family SPYJRS4_RS02140 PF13439 Glycosyltransferase Family 4 SPYJRS4_RS02140 PF00534 Glycosyl transferases group 1 SPYJRS4_RS02145 PF13439 Glycosyltransferase Family 4 SPYJRS4_RS02145 PF00534 Glycosyl transferases group 1 SPYJRS4_RS02150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPYJRS4_RS02150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPYJRS4_RS02150 PF02824 TGS domain SPYJRS4_RS02150 PF03129 Anticodon binding domain SPYJRS4_RS02155 PF00005 ABC transporter SPYJRS4_RS02170 PF02733 Dak1 domain SPYJRS4_RS02180 PF02733 Dak1 domain SPYJRS4_RS02185 PF02734 DAK2 domain SPYJRS4_RS02190 PF03610 PTS system fructose IIA component SPYJRS4_RS02195 PF00230 Major intrinsic protein SPYJRS4_RS02205 PF00108 Thiolase, N-terminal domain SPYJRS4_RS02205 PF02803 Thiolase, C-terminal domain SPYJRS4_RS02220 PF00486 Transcriptional regulatory protein, C terminal SPYJRS4_RS02220 PF00072 Response regulator receiver domain SPYJRS4_RS02225 PF00512 His Kinase A (phospho-acceptor) domain SPYJRS4_RS02225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS02225 PF13426 PAS domain SPYJRS4_RS02225 PF00672 HAMP domain SPYJRS4_RS02230 PF00753 Metallo-beta-lactamase superfamily SPYJRS4_RS02235 PF00035 Double-stranded RNA binding motif SPYJRS4_RS02235 PF14622 Ribonuclease-III-like SPYJRS4_RS02240 PF06470 SMC proteins Flexible Hinge Domain SPYJRS4_RS02240 PF02463 RecF/RecN/SMC N terminal domain SPYJRS4_RS02250 PF08501 Shikimate dehydrogenase substrate binding domain SPYJRS4_RS02250 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPYJRS4_RS02270 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) SPYJRS4_RS02290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPYJRS4_RS02290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SPYJRS4_RS02290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPYJRS4_RS02335 PF04860 Phage portal protein SPYJRS4_RS02355 PF02881 SRP54-type protein, helical bundle domain SPYJRS4_RS02355 PF00448 SRP54-type protein, GTPase domain SPYJRS4_RS02360 PF07690 Major Facilitator Superfamily SPYJRS4_RS02370 PF00367 phosphotransferase system, EIIB SPYJRS4_RS02370 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS02370 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPYJRS4_RS02375 PF00232 Glycosyl hydrolase family 1 SPYJRS4_RS02380 PF09323 Domain of unknown function (DUF1980) SPYJRS4_RS02385 PF03773 Predicted permease SPYJRS4_RS02390 PF16921 Tex protein YqgF-like domain SPYJRS4_RS02390 PF17674 HHH domain SPYJRS4_RS02390 PF00575 S1 RNA binding domain SPYJRS4_RS02390 PF09371 Tex-like protein N-terminal domain SPYJRS4_RS02395 PF10263 SprT-like family SPYJRS4_RS02405 PF07475 HPr Serine kinase C-terminal domain SPYJRS4_RS02405 PF02603 HPr Serine kinase N terminus SPYJRS4_RS02410 PF01790 Prolipoprotein diacylglyceryl transferase SPYJRS4_RS02420 PF12732 YtxH-like protein SPYJRS4_RS02435 PF16325 Peptidase family U32 C-terminal domain SPYJRS4_RS02435 PF01136 Peptidase family U32 SPYJRS4_RS02440 PF02229 Transcriptional Coactivator p15 (PC4) SPYJRS4_RS02445 PF00152 tRNA synthetases class II (D, K and N) SPYJRS4_RS02445 PF01336 OB-fold nucleic acid binding domain SPYJRS4_RS02465 PF09515 Thiamine transporter protein (Thia_YuaJ) SPYJRS4_RS02485 PF00255 Glutathione peroxidase SPYJRS4_RS02490 PF01432 Peptidase family M3 SPYJRS4_RS02490 PF08439 Oligopeptidase F SPYJRS4_RS02495 PF00311 Phosphoenolpyruvate carboxylase SPYJRS4_RS02500 PF01098 Cell cycle protein SPYJRS4_RS02505 PF03144 Elongation factor Tu domain 2 SPYJRS4_RS02505 PF03143 Elongation factor Tu C-terminal domain SPYJRS4_RS02505 PF00009 Elongation factor Tu GTP binding domain SPYJRS4_RS02510 PF00121 Triosephosphate isomerase SPYJRS4_RS02535 PF01966 HD domain SPYJRS4_RS02545 PF00689 Cation transporting ATPase, C-terminus SPYJRS4_RS02545 PF00690 Cation transporter/ATPase, N-terminus SPYJRS4_RS02550 PF00356 Bacterial regulatory proteins, lacI family SPYJRS4_RS02560 PF03613 PTS system mannose/fructose/sorbose family IID component SPYJRS4_RS02565 PF03609 PTS system sorbose-specific iic component SPYJRS4_RS02570 PF03830 PTS system sorbose subfamily IIB component SPYJRS4_RS02575 PF07470 Glycosyl Hydrolase Family 88 SPYJRS4_RS02600 PF01081 KDPG and KHG aldolase SPYJRS4_RS02605 PF13419 Haloacid dehalogenase-like hydrolase SPYJRS4_RS02610 PF08331 Domain of unknown function (DUF1730) SPYJRS4_RS02615 PF03462 PCRF domain SPYJRS4_RS02615 PF00472 RF-1 domain SPYJRS4_RS02620 PF00005 ABC transporter SPYJRS4_RS02625 PF18075 FtsX extracellular domain SPYJRS4_RS02625 PF02687 FtsX-like permease family SPYJRS4_RS02630 PF00753 Metallo-beta-lactamase superfamily SPYJRS4_RS02640 PF00929 Exonuclease SPYJRS4_RS02640 PF04851 Type III restriction enzyme, res subunit SPYJRS4_RS02640 PF13307 Helicase C-terminal domain SPYJRS4_RS02645 PF00155 Aminotransferase class I and II SPYJRS4_RS02650 PF01336 OB-fold nucleic acid binding domain SPYJRS4_RS02650 PF00152 tRNA synthetases class II (D, K and N) SPYJRS4_RS02655 PF03668 P-loop ATPase protein family SPYJRS4_RS02660 PF01933 Uncharacterised protein family UPF0052 SPYJRS4_RS02665 PF02650 WhiA C-terminal HTH domain SPYJRS4_RS02665 PF10298 WhiA N-terminal LAGLIDADG-like domain SPYJRS4_RS02665 PF14527 WhiA LAGLIDADG-like domain SPYJRS4_RS02670 PF03577 Peptidase family C69 SPYJRS4_RS02675 PF01297 Zinc-uptake complex component A periplasmic SPYJRS4_RS02675 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SPYJRS4_RS02680 PF07702 UTRA domain SPYJRS4_RS02680 PF00392 Bacterial regulatory proteins, gntR family SPYJRS4_RS02685 PF01380 SIS domain SPYJRS4_RS02690 PF01197 Ribosomal protein L31 SPYJRS4_RS02695 PF02272 DHHA1 domain SPYJRS4_RS02695 PF01368 DHH family SPYJRS4_RS02700 PF00258 Flavodoxin SPYJRS4_RS02710 PF00654 Voltage gated chloride channel SPYJRS4_RS02715 PF01245 Ribosomal protein L19 SPYJRS4_RS02730 PF01751 Toprim domain SPYJRS4_RS02730 PF00986 DNA gyrase B subunit, carboxyl terminus SPYJRS4_RS02730 PF00204 DNA gyrase B SPYJRS4_RS02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS02735 PF06160 Septation ring formation regulator, EzrA SPYJRS4_RS02745 PF00113 Enolase, C-terminal TIM barrel domain SPYJRS4_RS02745 PF03952 Enolase, N-terminal domain SPYJRS4_RS02780 PF00005 ABC transporter SPYJRS4_RS02800 PF06177 QueT transporter SPYJRS4_RS02805 PF12826 Helix-hairpin-helix motif SPYJRS4_RS02805 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SPYJRS4_RS02805 PF01653 NAD-dependent DNA ligase adenylation domain SPYJRS4_RS02805 PF03120 NAD-dependent DNA ligase OB-fold domain SPYJRS4_RS02805 PF00533 BRCA1 C Terminus (BRCT) domain SPYJRS4_RS02810 PF00781 Diacylglycerol kinase catalytic domain SPYJRS4_RS02815 PF00137 ATP synthase subunit C SPYJRS4_RS02820 PF00119 ATP synthase A chain SPYJRS4_RS02825 PF00430 ATP synthase B/B' CF(0) SPYJRS4_RS02830 PF00213 ATP synthase delta (OSCP) subunit SPYJRS4_RS02835 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPYJRS4_RS02835 PF00306 ATP synthase alpha/beta chain, C terminal domain SPYJRS4_RS02835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPYJRS4_RS02840 PF00231 ATP synthase SPYJRS4_RS02845 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPYJRS4_RS02845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPYJRS4_RS02850 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SPYJRS4_RS02850 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SPYJRS4_RS02860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPYJRS4_RS02870 PF01223 DNA/RNA non-specific endonuclease SPYJRS4_RS02875 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SPYJRS4_RS02875 PF01409 tRNA synthetases class II core domain (F) SPYJRS4_RS02880 PF03484 tRNA synthetase B5 domain SPYJRS4_RS02880 PF03147 Ferredoxin-fold anticodon binding domain SPYJRS4_RS02880 PF03483 B3/4 domain SPYJRS4_RS02880 PF01588 Putative tRNA binding domain SPYJRS4_RS02880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SPYJRS4_RS02895 PF02687 FtsX-like permease family SPYJRS4_RS02900 PF00005 ABC transporter SPYJRS4_RS02905 PF04228 Putative neutral zinc metallopeptidase SPYJRS4_RS02910 PF12705 PD-(D/E)XK nuclease superfamily SPYJRS4_RS02915 PF13361 UvrD-like helicase C-terminal domain SPYJRS4_RS02915 PF00580 UvrD/REP helicase N-terminal domain SPYJRS4_RS02915 PF12705 PD-(D/E)XK nuclease superfamily SPYJRS4_RS02920 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPYJRS4_RS02925 PF01165 Ribosomal protein S21 SPYJRS4_RS02930 PF01741 Large-conductance mechanosensitive channel, MscL SPYJRS4_RS02935 PF10410 DnaB-helicase binding domain of primase SPYJRS4_RS02935 PF08275 DNA primase catalytic core, N-terminal domain SPYJRS4_RS02935 PF01807 CHC2 zinc finger SPYJRS4_RS02940 PF04539 Sigma-70 region 3 SPYJRS4_RS02940 PF04545 Sigma-70, region 4 SPYJRS4_RS02940 PF04542 Sigma-70 region 2 SPYJRS4_RS02940 PF03979 Sigma-70 factor, region 1.1 SPYJRS4_RS02940 PF00140 Sigma-70 factor, region 1.2 SPYJRS4_RS02945 PF01883 Iron-sulfur cluster assembly protein SPYJRS4_RS02950 PF04321 RmlD substrate binding domain SPYJRS4_RS02960 PF02709 N-terminal domain of galactosyltransferase SPYJRS4_RS02960 PF00535 Glycosyl transferase family 2 SPYJRS4_RS02970 PF00005 ABC transporter SPYJRS4_RS02975 PF00535 Glycosyl transferase family 2 SPYJRS4_RS02990 PF00535 Glycosyl transferase family 2 SPYJRS4_RS03010 PF01546 Peptidase family M20/M25/M40 SPYJRS4_RS03010 PF07687 Peptidase dimerisation domain SPYJRS4_RS03025 PF02224 Cytidylate kinase SPYJRS4_RS03030 PF00707 Translation initiation factor IF-3, C-terminal domain SPYJRS4_RS03030 PF05198 Translation initiation factor IF-3, N-terminal domain SPYJRS4_RS03035 PF01632 Ribosomal protein L35 SPYJRS4_RS03040 PF00453 Ribosomal protein L20 SPYJRS4_RS03045 PF00884 Sulfatase SPYJRS4_RS03050 PF17785 PUA-like domain SPYJRS4_RS03050 PF10672 S-adenosylmethionine-dependent methyltransferase SPYJRS4_RS03055 PF01487 Type I 3-dehydroquinase SPYJRS4_RS03060 PF01264 Chorismate synthase SPYJRS4_RS03065 PF06133 Control of competence regulator ComK, YlbF/YmcA SPYJRS4_RS03070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPYJRS4_RS03070 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPYJRS4_RS03075 PF08245 Mur ligase middle domain SPYJRS4_RS03075 PF02875 Mur ligase family, glutamate ligase domain SPYJRS4_RS03085 PF00266 Aminotransferase class-V SPYJRS4_RS03090 PF02926 THUMP domain SPYJRS4_RS03090 PF02568 Thiamine biosynthesis protein (ThiI) SPYJRS4_RS03095 PF09587 Bacterial capsule synthesis protein PGA_cap SPYJRS4_RS03100 PF13936 Helix-turn-helix domain SPYJRS4_RS03105 PF00829 Ribosomal prokaryotic L21 protein SPYJRS4_RS03115 PF01016 Ribosomal L27 protein SPYJRS4_RS03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPYJRS4_RS03120 PF03466 LysR substrate binding domain SPYJRS4_RS03125 PF01252 Signal peptidase (SPase) II SPYJRS4_RS03130 PF00849 RNA pseudouridylate synthase SPYJRS4_RS03130 PF01479 S4 domain SPYJRS4_RS03135 PF00156 Phosphoribosyl transferase domain SPYJRS4_RS03140 PF00860 Permease family SPYJRS4_RS03145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPYJRS4_RS03145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPYJRS4_RS03150 PF00117 Glutamine amidotransferase class-I SPYJRS4_RS03150 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SPYJRS4_RS03155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPYJRS4_RS03155 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SPYJRS4_RS03155 PF02142 MGS-like domain SPYJRS4_RS03160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SPYJRS4_RS03165 PF00005 ABC transporter SPYJRS4_RS03170 PF02687 FtsX-like permease family SPYJRS4_RS03170 PF12704 MacB-like periplasmic core domain SPYJRS4_RS03175 PF03009 Glycerophosphoryl diester phosphodiesterase family SPYJRS4_RS03180 PF00886 Ribosomal protein S16 SPYJRS4_RS03210 PF01782 RimM N-terminal domain SPYJRS4_RS03210 PF05239 PRC-barrel domain SPYJRS4_RS03215 PF01746 tRNA (Guanine-1)-methyltransferase SPYJRS4_RS03220 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPYJRS4_RS03230 PF02558 Ketopantoate reductase PanE/ApbA SPYJRS4_RS03230 PF08546 Ketopantoate reductase PanE/ApbA C terminal SPYJRS4_RS03235 PF08220 DeoR-like helix-turn-helix domain SPYJRS4_RS03235 PF00455 DeoR C terminal sensor domain SPYJRS4_RS03240 PF00294 pfkB family carbohydrate kinase SPYJRS4_RS03245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS03245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPYJRS4_RS03250 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPYJRS4_RS03250 PF01476 LysM domain SPYJRS4_RS03255 PF01476 LysM domain SPYJRS4_RS03255 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPYJRS4_RS03265 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPYJRS4_RS03265 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPYJRS4_RS03270 PF09028 Mac 1 SPYJRS4_RS03275 PF00334 Nucleoside diphosphate kinase SPYJRS4_RS03285 PF02645 Uncharacterised protein, DegV family COG1307 SPYJRS4_RS03290 PF13735 tRNA nucleotidyltransferase domain 2 putative SPYJRS4_RS03290 PF01743 Poly A polymerase head domain SPYJRS4_RS03290 PF12627 Probable RNA and SrmB- binding site of polymerase A SPYJRS4_RS03295 PF12848 ABC transporter SPYJRS4_RS03295 PF16326 ABC transporter C-terminal domain SPYJRS4_RS03295 PF00005 ABC transporter SPYJRS4_RS03305 PF01327 Polypeptide deformylase SPYJRS4_RS03310 PF17936 Bacterial Ig domain SPYJRS4_RS03310 PF02872 5'-nucleotidase, C-terminal domain SPYJRS4_RS03310 PF00149 Calcineurin-like phosphoesterase SPYJRS4_RS03315 PF04607 Region found in RelA / SpoT proteins SPYJRS4_RS03320 PF00486 Transcriptional regulatory protein, C terminal SPYJRS4_RS03320 PF00072 Response regulator receiver domain SPYJRS4_RS03325 PF00512 His Kinase A (phospho-acceptor) domain SPYJRS4_RS03325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS03330 PF10509 Galactokinase galactose-binding signature SPYJRS4_RS03330 PF00288 GHMP kinases N terminal domain SPYJRS4_RS03330 PF08544 GHMP kinases C terminal SPYJRS4_RS03340 PF00288 GHMP kinases N terminal domain SPYJRS4_RS03340 PF08544 GHMP kinases C terminal SPYJRS4_RS03345 PF01070 FMN-dependent dehydrogenase SPYJRS4_RS03350 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SPYJRS4_RS03355 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SPYJRS4_RS03355 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SPYJRS4_RS03360 PF00303 Thymidylate synthase SPYJRS4_RS03365 PF00186 Dihydrofolate reductase SPYJRS4_RS03370 PF07724 AAA domain (Cdc48 subfamily) SPYJRS4_RS03370 PF10431 C-terminal, D2-small domain, of ClpB protein SPYJRS4_RS03370 PF06689 ClpX C4-type zinc finger SPYJRS4_RS03375 PF01926 50S ribosome-binding GTPase SPYJRS4_RS03385 PF17871 AAA lid domain SPYJRS4_RS03385 PF10431 C-terminal, D2-small domain, of ClpB protein SPYJRS4_RS03385 PF07724 AAA domain (Cdc48 subfamily) SPYJRS4_RS03385 PF00004 ATPase family associated with various cellular activities (AAA) SPYJRS4_RS03390 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SPYJRS4_RS03395 PF01676 Metalloenzyme superfamily SPYJRS4_RS03400 PF03960 ArsC family SPYJRS4_RS03405 PF01048 Phosphorylase superfamily SPYJRS4_RS03410 PF01048 Phosphorylase superfamily SPYJRS4_RS03420 PF03466 LysR substrate binding domain SPYJRS4_RS03420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPYJRS4_RS03430 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPYJRS4_RS03435 PF00156 Phosphoribosyl transferase domain SPYJRS4_RS03440 PF01425 Amidase SPYJRS4_RS03445 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPYJRS4_RS03450 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS03455 PF03167 Uracil DNA glycosylase superfamily SPYJRS4_RS03460 PF01979 Amidohydrolase family SPYJRS4_RS03465 PF02660 Glycerol-3-phosphate acyltransferase SPYJRS4_RS03470 PF00204 DNA gyrase B SPYJRS4_RS03470 PF01751 Toprim domain SPYJRS4_RS03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS03470 PF00986 DNA gyrase B subunit, carboxyl terminus SPYJRS4_RS03475 PF00521 DNA gyrase/topoisomerase IV, subunit A SPYJRS4_RS03475 PF03989 DNA gyrase C-terminal domain, beta-propeller SPYJRS4_RS03480 PF01063 Amino-transferase class IV SPYJRS4_RS03500 PF00575 S1 RNA binding domain SPYJRS4_RS03515 PF13333 Integrase core domain SPYJRS4_RS03515 PF13276 HTH-like domain SPYJRS4_RS03515 PF00665 Integrase core domain SPYJRS4_RS03560 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPYJRS4_RS03560 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPYJRS4_RS03570 PF17773 UPF0176 acylphosphatase like domain SPYJRS4_RS03570 PF12368 Rhodanase C-terminal SPYJRS4_RS03570 PF00581 Rhodanese-like domain SPYJRS4_RS03590 PF16360 GTP-binding GTPase Middle Region SPYJRS4_RS03590 PF13167 GTP-binding GTPase N-terminal SPYJRS4_RS03590 PF01926 50S ribosome-binding GTPase SPYJRS4_RS03595 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPYJRS4_RS03595 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPYJRS4_RS03600 PF00753 Metallo-beta-lactamase superfamily SPYJRS4_RS03600 PF12706 Beta-lactamase superfamily domain SPYJRS4_RS03605 PF00106 short chain dehydrogenase SPYJRS4_RS03610 PF02272 DHHA1 domain SPYJRS4_RS03610 PF01368 DHH family SPYJRS4_RS03610 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SPYJRS4_RS03610 PF17768 RecJ OB domain SPYJRS4_RS03615 PF00156 Phosphoribosyl transferase domain SPYJRS4_RS03625 PF10576 Iron-sulfur binding domain of endonuclease III SPYJRS4_RS03625 PF00633 Helix-hairpin-helix motif SPYJRS4_RS03625 PF00730 HhH-GPD superfamily base excision DNA repair protein SPYJRS4_RS03630 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SPYJRS4_RS03635 PF01784 NIF3 (NGG1p interacting factor 3) SPYJRS4_RS03640 PF01266 FAD dependent oxidoreductase SPYJRS4_RS03645 PF00483 Nucleotidyl transferase SPYJRS4_RS03650 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SPYJRS4_RS03655 PF16363 GDP-mannose 4,6 dehydratase SPYJRS4_RS03660 PF00293 NUDIX domain SPYJRS4_RS03665 PF01594 AI-2E family transporter SPYJRS4_RS03675 PF05670 NFACT protein RNA binding domain SPYJRS4_RS03690 PF00005 ABC transporter SPYJRS4_RS03695 PF00753 Metallo-beta-lactamase superfamily SPYJRS4_RS03695 PF17770 Ribonuclease J C-terminal domain SPYJRS4_RS03695 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPYJRS4_RS03700 PF00756 Putative esterase SPYJRS4_RS03710 PF12848 ABC transporter SPYJRS4_RS03710 PF00005 ABC transporter SPYJRS4_RS03710 PF16326 ABC transporter C-terminal domain SPYJRS4_RS03715 PF00676 Dehydrogenase E1 component SPYJRS4_RS03720 PF00364 Biotin-requiring enzyme SPYJRS4_RS03720 PF02779 Transketolase, pyrimidine binding domain SPYJRS4_RS03720 PF02780 Transketolase, C-terminal domain SPYJRS4_RS03725 PF02817 e3 binding domain SPYJRS4_RS03725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SPYJRS4_RS03725 PF00364 Biotin-requiring enzyme SPYJRS4_RS03735 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPYJRS4_RS03735 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPYJRS4_RS03740 PF02278 Polysaccharide lyase family 8, super-sandwich domain SPYJRS4_RS03740 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SPYJRS4_RS03740 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SPYJRS4_RS03745 PF03099 Biotin/lipoate A/B protein ligase family SPYJRS4_RS03745 PF10437 Bacterial lipoate protein ligase C-terminus SPYJRS4_RS03750 PF07685 CobB/CobQ-like glutamine amidotransferase domain SPYJRS4_RS03755 PF08353 Domain of unknown function (DUF1727) SPYJRS4_RS03755 PF08245 Mur ligase middle domain SPYJRS4_RS03760 PF02457 DisA bacterial checkpoint controller nucleotide-binding SPYJRS4_RS03770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPYJRS4_RS03770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPYJRS4_RS03770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPYJRS4_RS03770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPYJRS4_RS03780 PF04055 Radical SAM superfamily SPYJRS4_RS03780 PF06969 HemN C-terminal domain SPYJRS4_RS03790 PF13344 Haloacid dehalogenase-like hydrolase SPYJRS4_RS03805 PF03144 Elongation factor Tu domain 2 SPYJRS4_RS03805 PF14492 Elongation Factor G, domain II SPYJRS4_RS03805 PF00009 Elongation factor Tu GTP binding domain SPYJRS4_RS03805 PF00679 Elongation factor G C-terminus SPYJRS4_RS03805 PF06421 GTP-binding protein LepA C-terminus SPYJRS4_RS03810 PF02370 M protein repeat SPYJRS4_RS03810 PF00746 LPXTG cell wall anchor motif SPYJRS4_RS03815 PF01641 SelR domain SPYJRS4_RS03820 PF03601 Conserved hypothetical protein 698 SPYJRS4_RS03830 PF03830 PTS system sorbose subfamily IIB component SPYJRS4_RS03835 PF03609 PTS system sorbose-specific iic component SPYJRS4_RS03840 PF03613 PTS system mannose/fructose/sorbose family IID component SPYJRS4_RS03845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS03845 PF06580 Histidine kinase SPYJRS4_RS03850 PF00072 Response regulator receiver domain SPYJRS4_RS03850 PF12833 Helix-turn-helix domain SPYJRS4_RS03860 PF00171 Aldehyde dehydrogenase family SPYJRS4_RS03865 PF08459 UvrC Helix-hairpin-helix N-terminal SPYJRS4_RS03865 PF02151 UvrB/uvrC motif SPYJRS4_RS03865 PF01541 GIY-YIG catalytic domain SPYJRS4_RS03870 PF00881 Nitroreductase family SPYJRS4_RS03875 PF01546 Peptidase family M20/M25/M40 SPYJRS4_RS03880 PF01926 50S ribosome-binding GTPase SPYJRS4_RS03880 PF12631 MnmE helical domain SPYJRS4_RS03880 PF10396 GTP-binding protein TrmE N-terminus SPYJRS4_RS03885 PF13936 Helix-turn-helix domain SPYJRS4_RS03895 PF00571 CBS domain SPYJRS4_RS03895 PF07085 DRTGG domain SPYJRS4_RS03895 PF00392 Bacterial regulatory proteins, gntR family SPYJRS4_RS03895 PF03061 Thioesterase superfamily SPYJRS4_RS03900 PF00557 Metallopeptidase family M24 SPYJRS4_RS03910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPYJRS4_RS03915 PF01202 Shikimate kinase SPYJRS4_RS03920 PF03816 Cell envelope-related transcriptional attenuator domain SPYJRS4_RS03925 PF01938 TRAM domain SPYJRS4_RS03925 PF05958 tRNA (Uracil-5-)-methyltransferase SPYJRS4_RS03940 PF08903 Domain of unknown function (DUF1846) SPYJRS4_RS03945 PF07690 Major Facilitator Superfamily SPYJRS4_RS03955 PF01479 S4 domain SPYJRS4_RS03955 PF00849 RNA pseudouridylate synthase SPYJRS4_RS03970 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SPYJRS4_RS03970 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SPYJRS4_RS03975 PF13333 Integrase core domain SPYJRS4_RS03975 PF13276 HTH-like domain SPYJRS4_RS03975 PF00665 Integrase core domain SPYJRS4_RS03985 PF09269 Domain of unknown function (DUF1967) SPYJRS4_RS03985 PF01018 GTP1/OBG SPYJRS4_RS03985 PF01926 50S ribosome-binding GTPase SPYJRS4_RS03995 PF00232 Glycosyl hydrolase family 1 SPYJRS4_RS04005 PF08279 HTH domain SPYJRS4_RS04005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPYJRS4_RS04005 PF00874 PRD domain SPYJRS4_RS04005 PF05043 Mga helix-turn-helix domain SPYJRS4_RS04010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS04015 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPYJRS4_RS04025 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS04030 PF00005 ABC transporter SPYJRS4_RS04035 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPYJRS4_RS04040 PF04851 Type III restriction enzyme, res subunit SPYJRS4_RS04040 PF02151 UvrB/uvrC motif SPYJRS4_RS04040 PF12344 Ultra-violet resistance protein B SPYJRS4_RS04040 PF17757 UvrB interaction domain SPYJRS4_RS04040 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS04050 PF00501 AMP-binding enzyme SPYJRS4_RS04050 PF13193 AMP-binding enzyme C-terminal domain SPYJRS4_RS04055 PF03062 MBOAT, membrane-bound O-acyltransferase family SPYJRS4_RS04060 PF00550 Phosphopantetheine attachment site SPYJRS4_RS04065 PF04914 DltD protein SPYJRS4_RS04070 PF00934 PE family SPYJRS4_RS04070 PF07859 alpha/beta hydrolase fold SPYJRS4_RS04085 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04090 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04095 PF13416 Bacterial extracellular solute-binding protein SPYJRS4_RS04100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SPYJRS4_RS04100 PF00356 Bacterial regulatory proteins, lacI family SPYJRS4_RS04105 PF02446 4-alpha-glucanotransferase SPYJRS4_RS04110 PF00343 Carbohydrate phosphorylase SPYJRS4_RS04135 PF00005 ABC transporter SPYJRS4_RS04140 PF00392 Bacterial regulatory proteins, gntR family SPYJRS4_RS04145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPYJRS4_RS04145 PF01336 OB-fold nucleic acid binding domain SPYJRS4_RS04145 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPYJRS4_RS04145 PF02811 PHP domain SPYJRS4_RS04145 PF14579 Helix-hairpin-helix motif SPYJRS4_RS04150 PF00365 Phosphofructokinase SPYJRS4_RS04155 PF02887 Pyruvate kinase, alpha/beta domain SPYJRS4_RS04155 PF00224 Pyruvate kinase, barrel domain SPYJRS4_RS04160 PF10502 Signal peptidase, peptidase S26 SPYJRS4_RS04170 PF01380 SIS domain SPYJRS4_RS04175 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS04175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS04180 PF05043 Mga helix-turn-helix domain SPYJRS4_RS04180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPYJRS4_RS04180 PF08279 HTH domain SPYJRS4_RS04185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPYJRS4_RS04190 PF01232 Mannitol dehydrogenase Rossmann domain SPYJRS4_RS04190 PF08125 Mannitol dehydrogenase C-terminal domain SPYJRS4_RS04205 PF08274 PhnA Zinc-Ribbon SPYJRS4_RS04205 PF03831 PhnA domain SPYJRS4_RS04210 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04215 PF00005 ABC transporter SPYJRS4_RS04220 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPYJRS4_RS04225 PF07373 CAMP factor (Cfa) SPYJRS4_RS04230 PF01545 Cation efflux family SPYJRS4_RS04230 PF16916 Dimerisation domain of Zinc Transporter SPYJRS4_RS04235 PF01235 Sodium:alanine symporter family SPYJRS4_RS04240 PF00580 UvrD/REP helicase N-terminal domain SPYJRS4_RS04240 PF13361 UvrD-like helicase C-terminal domain SPYJRS4_RS04260 PF03780 Asp23 family, cell envelope-related function SPYJRS4_RS04265 PF05532 CsbD-like SPYJRS4_RS04270 PF03780 Asp23 family, cell envelope-related function SPYJRS4_RS04285 PF12704 MacB-like periplasmic core domain SPYJRS4_RS04285 PF02687 FtsX-like permease family SPYJRS4_RS04285 PF00005 ABC transporter SPYJRS4_RS04310 PF01509 TruB family pseudouridylate synthase (N terminal domain) SPYJRS4_RS04310 PF16198 tRNA pseudouridylate synthase B C-terminal domain SPYJRS4_RS04315 PF01687 Riboflavin kinase SPYJRS4_RS04315 PF06574 FAD synthetase SPYJRS4_RS04320 PF03960 ArsC family SPYJRS4_RS04325 PF05256 Uncharacterised protein family (UPF0223) SPYJRS4_RS04330 PF00459 Inositol monophosphatase family SPYJRS4_RS04335 PF17126 RsmF rRNA methyltransferase first C-terminal domain SPYJRS4_RS04335 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SPYJRS4_RS04335 PF01189 16S rRNA methyltransferase RsmB/F SPYJRS4_RS04340 PF12849 PBP superfamily domain SPYJRS4_RS04345 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04350 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04355 PF00005 ABC transporter SPYJRS4_RS04360 PF00005 ABC transporter SPYJRS4_RS04365 PF01895 PhoU domain SPYJRS4_RS04370 PF11838 ERAP1-like C-terminal domain SPYJRS4_RS04370 PF01433 Peptidase family M1 domain SPYJRS4_RS04375 PF00486 Transcriptional regulatory protein, C terminal SPYJRS4_RS04375 PF00072 Response regulator receiver domain SPYJRS4_RS04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS04380 PF00512 His Kinase A (phospho-acceptor) domain SPYJRS4_RS04385 PF01649 Ribosomal protein S20 SPYJRS4_RS04390 PF00485 Phosphoribulokinase / Uridine kinase family SPYJRS4_RS04395 PF05175 Methyltransferase small domain SPYJRS4_RS04400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPYJRS4_RS04405 PF02608 ABC transporter substrate-binding protein PnrA-like SPYJRS4_RS04410 PF00005 ABC transporter SPYJRS4_RS04415 PF02653 Branched-chain amino acid transport system / permease component SPYJRS4_RS04420 PF02653 Branched-chain amino acid transport system / permease component SPYJRS4_RS04425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPYJRS4_RS04425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPYJRS4_RS04425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPYJRS4_RS04425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPYJRS4_RS04430 PF12822 ECF transporter, substrate-specific component SPYJRS4_RS04435 PF02441 Flavoprotein SPYJRS4_RS04440 PF02441 Flavoprotein SPYJRS4_RS04440 PF04127 DNA / pantothenate metabolism flavoprotein SPYJRS4_RS04445 PF03099 Biotin/lipoate A/B protein ligase family SPYJRS4_RS04450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SPYJRS4_RS04455 PF00296 Luciferase-like monooxygenase SPYJRS4_RS04460 PF01597 Glycine cleavage H-protein SPYJRS4_RS04465 PF01661 Macro domain SPYJRS4_RS04475 PF03099 Biotin/lipoate A/B protein ligase family SPYJRS4_RS04475 PF10437 Bacterial lipoate protein ligase C-terminus SPYJRS4_RS04480 PF01268 Formate--tetrahydrofolate ligase SPYJRS4_RS04485 PF13091 PLD-like domain SPYJRS4_RS04490 PF03477 ATP cone domain SPYJRS4_RS04490 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPYJRS4_RS04495 PF00392 Bacterial regulatory proteins, gntR family SPYJRS4_RS04495 PF00155 Aminotransferase class I and II SPYJRS4_RS04500 PF02581 Thiamine monophosphate synthase SPYJRS4_RS04500 PF08543 Phosphomethylpyrimidine kinase SPYJRS4_RS04510 PF00005 ABC transporter SPYJRS4_RS04510 PF12848 ABC transporter SPYJRS4_RS04520 PF00958 GMP synthase C terminal domain SPYJRS4_RS04520 PF00117 Glutamine amidotransferase class-I SPYJRS4_RS04520 PF02540 NAD synthase SPYJRS4_RS04530 PF07702 UTRA domain SPYJRS4_RS04530 PF00392 Bacterial regulatory proteins, gntR family SPYJRS4_RS04535 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SPYJRS4_RS04540 PF02978 Signal peptide binding domain SPYJRS4_RS04540 PF02881 SRP54-type protein, helical bundle domain SPYJRS4_RS04540 PF00448 SRP54-type protein, GTPase domain SPYJRS4_RS04550 PF00589 Phage integrase family SPYJRS4_RS04550 PF13495 Phage integrase, N-terminal SAM-like domain SPYJRS4_RS04560 PF08218 Citrate lyase ligase C-terminal domain SPYJRS4_RS04565 PF00682 HMGL-like SPYJRS4_RS04565 PF02436 Conserved carboxylase domain SPYJRS4_RS04565 PF00364 Biotin-requiring enzyme SPYJRS4_RS04570 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SPYJRS4_RS04575 PF04223 Citrate lyase, alpha subunit (CitF) SPYJRS4_RS04580 PF03328 HpcH/HpaI aldolase/citrate lyase family SPYJRS4_RS04585 PF06857 Malonate decarboxylase delta subunit (MdcD) SPYJRS4_RS04590 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SPYJRS4_RS04595 PF00364 Biotin-requiring enzyme SPYJRS4_RS04605 PF03600 Citrate transporter SPYJRS4_RS04615 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SPYJRS4_RS04620 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SPYJRS4_RS04625 PF00364 Biotin-requiring enzyme SPYJRS4_RS04635 PF00682 HMGL-like SPYJRS4_RS04635 PF00364 Biotin-requiring enzyme SPYJRS4_RS04635 PF02436 Conserved carboxylase domain SPYJRS4_RS04640 PF01134 Glucose inhibited division protein A SPYJRS4_RS04645 PF01396 Topoisomerase DNA binding C4 zinc finger SPYJRS4_RS04645 PF01751 Toprim domain SPYJRS4_RS04645 PF01131 DNA topoisomerase SPYJRS4_RS04650 PF18255 DNA processing protein A sterile alpha motif domain SPYJRS4_RS04650 PF02481 DNA recombination-mediator protein A SPYJRS4_RS04655 PF01351 Ribonuclease HII SPYJRS4_RS04660 PF01926 50S ribosome-binding GTPase SPYJRS4_RS04670 PF03006 Haemolysin-III related SPYJRS4_RS04685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPYJRS4_RS04690 PF04203 Sortase domain SPYJRS4_RS04695 PF00521 DNA gyrase/topoisomerase IV, subunit A SPYJRS4_RS04695 PF03989 DNA gyrase C-terminal domain, beta-propeller SPYJRS4_RS04700 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SPYJRS4_RS04700 PF00056 lactate/malate dehydrogenase, NAD binding domain SPYJRS4_RS04705 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPYJRS4_RS04705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPYJRS4_RS04710 PF00005 ABC transporter SPYJRS4_RS04710 PF00664 ABC transporter transmembrane region SPYJRS4_RS04715 PF00005 ABC transporter SPYJRS4_RS04715 PF00664 ABC transporter transmembrane region SPYJRS4_RS04730 PF00464 Serine hydroxymethyltransferase SPYJRS4_RS04745 PF05175 Methyltransferase small domain SPYJRS4_RS04750 PF00472 RF-1 domain SPYJRS4_RS04750 PF03462 PCRF domain SPYJRS4_RS04755 PF00265 Thymidine kinase SPYJRS4_RS04760 PF01361 Tautomerase enzyme SPYJRS4_RS04765 PF02424 ApbE family SPYJRS4_RS04770 PF00860 Permease family SPYJRS4_RS04775 PF00156 Phosphoribosyl transferase domain SPYJRS4_RS04780 PF00478 IMP dehydrogenase / GMP reductase domain SPYJRS4_RS04785 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04790 PF00005 ABC transporter SPYJRS4_RS04790 PF00571 CBS domain SPYJRS4_RS04800 PF00106 short chain dehydrogenase SPYJRS4_RS04805 PF01515 Phosphate acetyl/butaryl transferase SPYJRS4_RS04810 PF00849 RNA pseudouridylate synthase SPYJRS4_RS04810 PF01479 S4 domain SPYJRS4_RS04815 PF01513 ATP-NAD kinase SPYJRS4_RS04820 PF04607 Region found in RelA / SpoT proteins SPYJRS4_RS04830 PF14572 Phosphoribosyl synthetase-associated domain SPYJRS4_RS04830 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPYJRS4_RS04835 PF00266 Aminotransferase class-V SPYJRS4_RS04845 PF06971 Putative DNA-binding protein N-terminus SPYJRS4_RS04845 PF02629 CoA binding domain SPYJRS4_RS04850 PF07722 Peptidase C26 SPYJRS4_RS04855 PF04002 RadC-like JAB domain SPYJRS4_RS04870 PF00654 Voltage gated chloride channel SPYJRS4_RS04875 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SPYJRS4_RS04885 PF00390 Malic enzyme, N-terminal domain SPYJRS4_RS04885 PF03949 Malic enzyme, NAD binding domain SPYJRS4_RS04890 PF03390 2-hydroxycarboxylate transporter family SPYJRS4_RS04895 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPYJRS4_RS04895 PF17203 Single cache domain 3 SPYJRS4_RS04895 PF00989 PAS fold SPYJRS4_RS04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS04900 PF00072 Response regulator receiver domain SPYJRS4_RS04905 PF13416 Bacterial extracellular solute-binding protein SPYJRS4_RS04910 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04915 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS04920 PF08402 TOBE domain SPYJRS4_RS04920 PF00005 ABC transporter SPYJRS4_RS04925 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SPYJRS4_RS04925 PF01565 FAD binding domain SPYJRS4_RS04930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SPYJRS4_RS04935 PF02152 Dihydroneopterin aldolase SPYJRS4_RS04940 PF00809 Pterin binding enzyme SPYJRS4_RS04945 PF01227 GTP cyclohydrolase I SPYJRS4_RS04950 PF08245 Mur ligase middle domain SPYJRS4_RS04950 PF02875 Mur ligase family, glutamate ligase domain SPYJRS4_RS04960 PF00768 D-alanyl-D-alanine carboxypeptidase SPYJRS4_RS04960 PF07943 Penicillin-binding protein 5, C-terminal domain SPYJRS4_RS04965 PF00542 Ribosomal protein L7/L12 C-terminal domain SPYJRS4_RS04965 PF16320 Ribosomal protein L7/L12 dimerisation domain SPYJRS4_RS04970 PF00466 Ribosomal protein L10 SPYJRS4_RS04975 PF13936 Helix-turn-helix domain SPYJRS4_RS04980 PF17573 GA-like domain SPYJRS4_RS04980 PF01378 B domain SPYJRS4_RS04980 PF01378 B domain SPYJRS4_RS04980 PF00746 LPXTG cell wall anchor motif SPYJRS4_RS04980 PF17573 GA-like domain SPYJRS4_RS04980 PF00746 LPXTG cell wall anchor motif SPYJRS4_RS04990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPYJRS4_RS04995 PF02773 S-adenosylmethionine synthetase, C-terminal domain SPYJRS4_RS04995 PF02772 S-adenosylmethionine synthetase, central domain SPYJRS4_RS04995 PF00438 S-adenosylmethionine synthetase, N-terminal domain SPYJRS4_RS05005 PF02237 Biotin protein ligase C terminal domain SPYJRS4_RS05005 PF03099 Biotin/lipoate A/B protein ligase family SPYJRS4_RS05005 PF08279 HTH domain SPYJRS4_RS05010 PF12169 DNA polymerase III subunits gamma and tau domain III SPYJRS4_RS05015 PF13185 GAF domain SPYJRS4_RS05030 PF00485 Phosphoribulokinase / Uridine kinase family SPYJRS4_RS05035 PF00270 DEAD/DEAH box helicase SPYJRS4_RS05035 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS05040 PF01522 Polysaccharide deacetylase SPYJRS4_RS05040 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SPYJRS4_RS05045 PF00171 Aldehyde dehydrogenase family SPYJRS4_RS05050 PF05524 PEP-utilising enzyme, N-terminal SPYJRS4_RS05050 PF02896 PEP-utilising enzyme, TIM barrel domain SPYJRS4_RS05050 PF00391 PEP-utilising enzyme, mobile domain SPYJRS4_RS05055 PF00381 PTS HPr component phosphorylation site SPYJRS4_RS05060 PF00462 Glutaredoxin SPYJRS4_RS05065 PF02867 Ribonucleotide reductase, barrel domain SPYJRS4_RS05065 PF08343 Ribonucleotide reductase N-terminal SPYJRS4_RS05065 PF00317 Ribonucleotide reductase, all-alpha domain SPYJRS4_RS05070 PF00268 Ribonucleotide reductase, small chain SPYJRS4_RS05085 PF00665 Integrase core domain SPYJRS4_RS05085 PF13276 HTH-like domain SPYJRS4_RS05085 PF13333 Integrase core domain SPYJRS4_RS05090 PF00665 Integrase core domain SPYJRS4_RS05090 PF13333 Integrase core domain SPYJRS4_RS05090 PF13276 HTH-like domain SPYJRS4_RS05095 PF13276 HTH-like domain SPYJRS4_RS05095 PF00665 Integrase core domain SPYJRS4_RS05095 PF13333 Integrase core domain SPYJRS4_RS05110 PF01381 Helix-turn-helix SPYJRS4_RS05115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPYJRS4_RS05115 PF01411 tRNA synthetases class II (A) SPYJRS4_RS05115 PF02272 DHHA1 domain SPYJRS4_RS05120 PF13145 PPIC-type PPIASE domain SPYJRS4_RS05125 PF01596 O-methyltransferase SPYJRS4_RS05130 PF07690 Major Facilitator Superfamily SPYJRS4_RS05135 PF08439 Oligopeptidase F SPYJRS4_RS05135 PF01432 Peptidase family M3 SPYJRS4_RS05145 PF00849 RNA pseudouridylate synthase SPYJRS4_RS05145 PF01479 S4 domain SPYJRS4_RS05150 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SPYJRS4_RS05155 PF02547 Queuosine biosynthesis protein SPYJRS4_RS05175 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SPYJRS4_RS05175 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SPYJRS4_RS05185 PF00753 Metallo-beta-lactamase superfamily SPYJRS4_RS05185 PF03772 Competence protein SPYJRS4_RS05185 PF13567 Domain of unknown function (DUF4131) SPYJRS4_RS05225 PF01553 Acyltransferase SPYJRS4_RS05230 PF05175 Methyltransferase small domain SPYJRS4_RS05230 PF17827 PrmC N-terminal domain SPYJRS4_RS05235 PF01541 GIY-YIG catalytic domain SPYJRS4_RS05240 PF02705 K+ potassium transporter SPYJRS4_RS05245 PF00270 DEAD/DEAH box helicase SPYJRS4_RS05245 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS05250 PF03144 Elongation factor Tu domain 2 SPYJRS4_RS05250 PF00009 Elongation factor Tu GTP binding domain SPYJRS4_RS05250 PF16658 Class II release factor RF3, C-terminal domain SPYJRS4_RS05260 PF02875 Mur ligase family, glutamate ligase domain SPYJRS4_RS05260 PF01225 Mur ligase family, catalytic domain SPYJRS4_RS05260 PF08245 Mur ligase middle domain SPYJRS4_RS05265 PF01820 D-ala D-ala ligase N-terminus SPYJRS4_RS05265 PF07478 D-ala D-ala ligase C-terminus SPYJRS4_RS05270 PF13662 Toprim domain SPYJRS4_RS05270 PF02132 RecR protein SPYJRS4_RS05275 PF01226 Formate/nitrite transporter SPYJRS4_RS05285 PF08279 HTH domain SPYJRS4_RS05285 PF02829 3H domain SPYJRS4_RS05290 PF00300 Histidine phosphatase superfamily (branch 1) SPYJRS4_RS05295 PF01180 Dihydroorotate dehydrogenase SPYJRS4_RS05315 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPYJRS4_RS05315 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPYJRS4_RS05325 PF05105 Bacteriophage holin family SPYJRS4_RS05480 PF14284 PcfJ-like protein SPYJRS4_RS05500 PF03837 RecT family SPYJRS4_RS05545 PF01381 Helix-turn-helix SPYJRS4_RS05555 PF14659 Phage integrase, N-terminal SAM-like domain SPYJRS4_RS05555 PF00589 Phage integrase family SPYJRS4_RS05560 PF00216 Bacterial DNA-binding protein SPYJRS4_RS05570 PF13472 GDSL-like Lipase/Acylhydrolase family SPYJRS4_RS05575 PF02645 Uncharacterised protein, DegV family COG1307 SPYJRS4_RS05585 PF13476 AAA domain SPYJRS4_RS05590 PF02863 Arginine repressor, C-terminal domain SPYJRS4_RS05590 PF01316 Arginine repressor, DNA binding domain SPYJRS4_RS05595 PF01479 S4 domain SPYJRS4_RS05595 PF01728 FtsJ-like methyltransferase SPYJRS4_RS05600 PF00348 Polyprenyl synthetase SPYJRS4_RS05605 PF02609 Exonuclease VII small subunit SPYJRS4_RS05610 PF02601 Exonuclease VII, large subunit SPYJRS4_RS05610 PF13742 OB-fold nucleic acid binding domain SPYJRS4_RS05615 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SPYJRS4_RS05615 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SPYJRS4_RS05620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPYJRS4_RS05620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPYJRS4_RS05620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPYJRS4_RS05620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPYJRS4_RS05625 PF00875 DNA photolyase SPYJRS4_RS05625 PF03441 FAD binding domain of DNA photolyase SPYJRS4_RS05630 PF00005 ABC transporter SPYJRS4_RS05635 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS05640 PF08796 Protein of unknown function (DUF1797) SPYJRS4_RS05645 PF17871 AAA lid domain SPYJRS4_RS05645 PF07724 AAA domain (Cdc48 subfamily) SPYJRS4_RS05645 PF00004 ATPase family associated with various cellular activities (AAA) SPYJRS4_RS05645 PF10431 C-terminal, D2-small domain, of ClpB protein SPYJRS4_RS05650 PF00293 NUDIX domain SPYJRS4_RS05660 PF00133 tRNA synthetases class I (I, L, M and V) SPYJRS4_RS05660 PF08264 Anticodon-binding domain of tRNA SPYJRS4_RS05665 PF05103 DivIVA protein SPYJRS4_RS05670 PF01479 S4 domain SPYJRS4_RS05670 PF17774 Putative RNA-binding domain in YlmH SPYJRS4_RS05680 PF04472 Cell division protein SepF SPYJRS4_RS05685 PF01168 Alanine racemase, N-terminal domain SPYJRS4_RS05690 PF00091 Tubulin/FtsZ family, GTPase domain SPYJRS4_RS05690 PF12327 FtsZ family, C-terminal domain SPYJRS4_RS05695 PF02491 SHS2 domain inserted in FTSA SPYJRS4_RS05695 PF11983 Membrane-attachment and polymerisation-promoting switch SPYJRS4_RS05700 PF08478 POTRA domain, FtsQ-type SPYJRS4_RS05705 PF03033 Glycosyltransferase family 28 N-terminal domain SPYJRS4_RS05705 PF04101 Glycosyltransferase family 28 C-terminal domain SPYJRS4_RS05710 PF02875 Mur ligase family, glutamate ligase domain SPYJRS4_RS05710 PF08245 Mur ligase middle domain SPYJRS4_RS05720 PF03144 Elongation factor Tu domain 2 SPYJRS4_RS05720 PF00009 Elongation factor Tu GTP binding domain SPYJRS4_RS05720 PF00679 Elongation factor G C-terminus SPYJRS4_RS05720 PF14492 Elongation Factor G, domain II SPYJRS4_RS05725 PF00581 Rhodanese-like domain SPYJRS4_RS05730 PF00480 ROK family SPYJRS4_RS05740 PF00210 Ferritin-like domain SPYJRS4_RS05750 PF04055 Radical SAM superfamily SPYJRS4_RS05755 PF06265 Protein of unknown function (DUF1027) SPYJRS4_RS05765 PF05362 Lon protease (S16) C-terminal proteolytic domain SPYJRS4_RS05765 PF13180 PDZ domain SPYJRS4_RS05770 PF01467 Cytidylyltransferase-like SPYJRS4_RS05780 PF03590 Aspartate-ammonia ligase SPYJRS4_RS05785 PF00696 Amino acid kinase family SPYJRS4_RS05790 PF01546 Peptidase family M20/M25/M40 SPYJRS4_RS05795 PF03606 C4-dicarboxylate anaerobic carrier SPYJRS4_RS05800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPYJRS4_RS05800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPYJRS4_RS05805 PF13673 Acetyltransferase (GNAT) domain SPYJRS4_RS05820 PF02863 Arginine repressor, C-terminal domain SPYJRS4_RS05820 PF01316 Arginine repressor, DNA binding domain SPYJRS4_RS05835 PF06580 Histidine kinase SPYJRS4_RS05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS05835 PF02743 Cache domain SPYJRS4_RS05835 PF00672 HAMP domain SPYJRS4_RS05840 PF12833 Helix-turn-helix domain SPYJRS4_RS05840 PF00072 Response regulator receiver domain SPYJRS4_RS05845 PF01641 SelR domain SPYJRS4_RS05845 PF01625 Peptide methionine sulfoxide reductase SPYJRS4_RS05850 PF08534 Redoxin SPYJRS4_RS05855 PF02683 Cytochrome C biogenesis protein transmembrane region SPYJRS4_RS05865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPYJRS4_RS05865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPYJRS4_RS05875 PF10458 Valyl tRNA synthetase tRNA binding arm SPYJRS4_RS05875 PF00133 tRNA synthetases class I (I, L, M and V) SPYJRS4_RS05875 PF08264 Anticodon-binding domain of tRNA SPYJRS4_RS05905 PF01817 Chorismate mutase type II SPYJRS4_RS05905 PF00793 DAHP synthetase I family SPYJRS4_RS05910 PF01761 3-dehydroquinate synthase SPYJRS4_RS05925 PF13649 Methyltransferase domain SPYJRS4_RS05930 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPYJRS4_RS05930 PF08501 Shikimate dehydrogenase substrate binding domain SPYJRS4_RS05935 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SPYJRS4_RS05935 PF16355 Domain of unknown function (DUF4982) SPYJRS4_RS05935 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SPYJRS4_RS05935 PF00703 Glycosyl hydrolases family 2 SPYJRS4_RS05935 PF02837 Glycosyl hydrolases family 2, sugar binding domain SPYJRS4_RS05940 PF00072 Response regulator receiver domain SPYJRS4_RS05940 PF12833 Helix-turn-helix domain SPYJRS4_RS05945 PF06580 Histidine kinase SPYJRS4_RS05945 PF00672 HAMP domain SPYJRS4_RS05945 PF02743 Cache domain SPYJRS4_RS05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS05955 PF12010 Domain of unknown function (DUF3502) SPYJRS4_RS05960 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS05965 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS05970 PF00480 ROK family SPYJRS4_RS05975 PF00232 Glycosyl hydrolase family 1 SPYJRS4_RS05980 PF02838 Glycosyl hydrolase family 20, domain 2 SPYJRS4_RS05980 PF07555 beta-N-acetylglucosaminidase SPYJRS4_RS05985 PF00392 Bacterial regulatory proteins, gntR family SPYJRS4_RS05995 PF07748 Glycosyl hydrolases family 38 C-terminal domain SPYJRS4_RS05995 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SPYJRS4_RS05995 PF09261 Alpha mannosidase middle domain SPYJRS4_RS05995 PF01074 Glycosyl hydrolases family 38 N-terminal domain SPYJRS4_RS05995 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SPYJRS4_RS06005 PF05958 tRNA (Uracil-5-)-methyltransferase SPYJRS4_RS06005 PF01938 TRAM domain SPYJRS4_RS06030 PF08460 Bacterial SH3 domain SPYJRS4_RS06030 PF05257 CHAP domain SPYJRS4_RS06030 PF01520 N-acetylmuramoyl-L-alanine amidase SPYJRS4_RS06170 PF02195 ParB-like nuclease domain SPYJRS4_RS06220 PF05866 Endodeoxyribonuclease RusA SPYJRS4_RS06230 PF00436 Single-strand binding protein family SPYJRS4_RS06265 PF01381 Helix-turn-helix SPYJRS4_RS06280 PF10548 P22AR C-terminal domain SPYJRS4_RS06280 PF08346 AntA/AntB antirepressor SPYJRS4_RS06305 PF00589 Phage integrase family SPYJRS4_RS06305 PF02899 Phage integrase, N-terminal SAM-like domain SPYJRS4_RS06310 PF02631 RecX family SPYJRS4_RS06315 PF04167 Protein of unknown function (DUF402) SPYJRS4_RS06375 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SPYJRS4_RS06375 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SPYJRS4_RS06385 PF04851 Type III restriction enzyme, res subunit SPYJRS4_RS06385 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS06390 PF01205 Uncharacterized protein family UPF0029 SPYJRS4_RS06390 PF09186 Domain of unknown function (DUF1949) SPYJRS4_RS06395 PF00291 Pyridoxal-phosphate dependent enzyme SPYJRS4_RS06400 PF00575 S1 RNA binding domain SPYJRS4_RS06405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPYJRS4_RS06410 PF00072 Response regulator receiver domain SPYJRS4_RS06410 PF00196 Bacterial regulatory proteins, luxR family SPYJRS4_RS06415 PF07730 Histidine kinase SPYJRS4_RS06415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS06415 PF00672 HAMP domain SPYJRS4_RS06425 PF03793 PASTA domain SPYJRS4_RS06425 PF00069 Protein kinase domain SPYJRS4_RS06435 PF01029 NusB family SPYJRS4_RS06435 PF01189 16S rRNA methyltransferase RsmB/F SPYJRS4_RS06440 PF02911 Formyl transferase, C-terminal domain SPYJRS4_RS06440 PF00551 Formyl transferase SPYJRS4_RS06445 PF17764 3′ DNA-binding domain (3′BD) SPYJRS4_RS06445 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS06445 PF18074 Primosomal protein N C-terminal domain SPYJRS4_RS06445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SPYJRS4_RS06445 PF04851 Type III restriction enzyme, res subunit SPYJRS4_RS06450 PF01192 RNA polymerase Rpb6 SPYJRS4_RS06455 PF00625 Guanylate kinase SPYJRS4_RS06460 PF01966 HD domain SPYJRS4_RS06460 PF00013 KH domain SPYJRS4_RS06460 PF12072 Domain of unknown function (DUF3552) SPYJRS4_RS06465 PF03466 LysR substrate binding domain SPYJRS4_RS06465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPYJRS4_RS06470 PF02803 Thiolase, C-terminal domain SPYJRS4_RS06470 PF00108 Thiolase, N-terminal domain SPYJRS4_RS06475 PF01144 Coenzyme A transferase SPYJRS4_RS06480 PF01144 Coenzyme A transferase SPYJRS4_RS06495 PF02664 S-Ribosylhomocysteinase (LuxS) SPYJRS4_RS06500 PF18041 MapZ extracellular domain 1 SPYJRS4_RS06500 PF18708 MapZ extracellular C-terminal domain 2 SPYJRS4_RS06505 PF02926 THUMP domain SPYJRS4_RS06505 PF01170 Putative RNA methylase family UPF0020 SPYJRS4_RS06515 PF05103 DivIVA protein SPYJRS4_RS06520 PF06908 YspA SLOG family SPYJRS4_RS06525 PF03838 Recombination protein U SPYJRS4_RS06530 PF00905 Penicillin binding protein transpeptidase domain SPYJRS4_RS06530 PF00912 Transglycosylase SPYJRS4_RS06535 PF03051 Peptidase C1-like family SPYJRS4_RS06540 PF02540 NAD synthase SPYJRS4_RS06545 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SPYJRS4_RS06545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SPYJRS4_RS06545 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SPYJRS4_RS06550 PF00324 Amino acid permease SPYJRS4_RS06555 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPYJRS4_RS06565 PF00005 ABC transporter SPYJRS4_RS06570 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS06575 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS06575 PF00270 DEAD/DEAH box helicase SPYJRS4_RS06580 PF00953 Glycosyl transferase family 4 SPYJRS4_RS06580 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SPYJRS4_RS06585 PF00905 Penicillin binding protein transpeptidase domain SPYJRS4_RS06585 PF03717 Penicillin-binding Protein dimerisation domain SPYJRS4_RS06585 PF03793 PASTA domain SPYJRS4_RS06595 PF01795 MraW methylase family SPYJRS4_RS06605 PF00171 Aldehyde dehydrogenase family SPYJRS4_RS06610 PF00696 Amino acid kinase family SPYJRS4_RS06620 PF00005 ABC transporter SPYJRS4_RS06630 PF02779 Transketolase, pyrimidine binding domain SPYJRS4_RS06630 PF02780 Transketolase, C-terminal domain SPYJRS4_RS06630 PF00456 Transketolase, thiamine diphosphate binding domain SPYJRS4_RS06635 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPYJRS4_RS06645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPYJRS4_RS06645 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPYJRS4_RS06650 PF00230 Major intrinsic protein SPYJRS4_RS06655 PF01266 FAD dependent oxidoreductase SPYJRS4_RS06655 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SPYJRS4_RS06660 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPYJRS4_RS06660 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPYJRS4_RS06665 PF03413 Peptidase propeptide and YPEB domain SPYJRS4_RS06675 PF02092 Glycyl-tRNA synthetase beta subunit SPYJRS4_RS06680 PF02091 Glycyl-tRNA synthetase alpha subunit SPYJRS4_RS06685 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SPYJRS4_RS06690 PF00248 Aldo/keto reductase family SPYJRS4_RS06695 PF01979 Amidohydrolase family SPYJRS4_RS06700 PF02690 Na+/Pi-cotransporter SPYJRS4_RS06710 PF02645 Uncharacterised protein, DegV family COG1307 SPYJRS4_RS06715 PF00440 Bacterial regulatory proteins, tetR family SPYJRS4_RS06725 PF03458 UPF0126 domain SPYJRS4_RS06730 PF01791 DeoC/LacD family aldolase SPYJRS4_RS06735 PF00294 pfkB family carbohydrate kinase SPYJRS4_RS06740 PF02502 Ribose/Galactose Isomerase SPYJRS4_RS06745 PF02502 Ribose/Galactose Isomerase SPYJRS4_RS06765 PF00455 DeoR C terminal sensor domain SPYJRS4_RS06765 PF08220 DeoR-like helix-turn-helix domain SPYJRS4_RS06775 PF00403 Heavy-metal-associated domain SPYJRS4_RS06780 PF03965 Penicillinase repressor SPYJRS4_RS06785 PF07859 alpha/beta hydrolase fold SPYJRS4_RS06790 PF02033 Ribosome-binding factor A SPYJRS4_RS06795 PF00009 Elongation factor Tu GTP binding domain SPYJRS4_RS06795 PF04760 Translation initiation factor IF-2, N-terminal region SPYJRS4_RS06795 PF11987 Translation-initiation factor 2 SPYJRS4_RS06800 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SPYJRS4_RS06805 PF04296 Protein of unknown function (DUF448) SPYJRS4_RS06810 PF08529 NusA N-terminal domain SPYJRS4_RS06810 PF00575 S1 RNA binding domain SPYJRS4_RS06810 PF13184 NusA-like KH domain SPYJRS4_RS06815 PF17384 RimP C-terminal SH3 domain SPYJRS4_RS06815 PF02576 RimP N-terminal domain SPYJRS4_RS06825 PF02390 Putative methyltransferase SPYJRS4_RS06835 PF05975 Bacterial ABC transporter protein EcsB SPYJRS4_RS06840 PF00005 ABC transporter SPYJRS4_RS06845 PF01230 HIT domain SPYJRS4_RS06855 PF03816 Cell envelope-related transcriptional attenuator domain SPYJRS4_RS06865 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SPYJRS4_RS06870 PF00860 Permease family SPYJRS4_RS06880 PF03830 PTS system sorbose subfamily IIB component SPYJRS4_RS06880 PF03610 PTS system fructose IIA component SPYJRS4_RS06885 PF03609 PTS system sorbose-specific iic component SPYJRS4_RS06890 PF03613 PTS system mannose/fructose/sorbose family IID component SPYJRS4_RS06900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPYJRS4_RS06900 PF02403 Seryl-tRNA synthetase N-terminal domain SPYJRS4_RS06905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SPYJRS4_RS06910 PF01039 Carboxyl transferase domain SPYJRS4_RS06910 PF17848 Acetyl-coA carboxylase zinc finger domain SPYJRS4_RS06915 PF02785 Biotin carboxylase C-terminal domain SPYJRS4_RS06915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPYJRS4_RS06915 PF00289 Biotin carboxylase, N-terminal domain SPYJRS4_RS06920 PF07977 FabA-like domain SPYJRS4_RS06925 PF00364 Biotin-requiring enzyme SPYJRS4_RS06930 PF00109 Beta-ketoacyl synthase, N-terminal domain SPYJRS4_RS06930 PF02801 Beta-ketoacyl synthase, C-terminal domain SPYJRS4_RS06940 PF00698 Acyl transferase domain SPYJRS4_RS06945 PF03060 Nitronate monooxygenase SPYJRS4_RS06950 PF00550 Phosphopantetheine attachment site SPYJRS4_RS06955 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SPYJRS4_RS06955 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SPYJRS4_RS06965 PF00378 Enoyl-CoA hydratase/isomerase SPYJRS4_RS06970 PF01556 DnaJ C terminal domain SPYJRS4_RS06970 PF00684 DnaJ central domain SPYJRS4_RS06970 PF00226 DnaJ domain SPYJRS4_RS06975 PF00012 Hsp70 protein SPYJRS4_RS06980 PF01025 GrpE SPYJRS4_RS06985 PF01628 HrcA protein C terminal domain SPYJRS4_RS06985 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SPYJRS4_RS07000 PF00300 Histidine phosphatase superfamily (branch 1) SPYJRS4_RS07005 PF04226 Transglycosylase associated protein SPYJRS4_RS07015 PF02637 GatB domain SPYJRS4_RS07015 PF02934 GatB/GatE catalytic domain SPYJRS4_RS07020 PF01425 Amidase SPYJRS4_RS07025 PF02686 Glu-tRNAGln amidotransferase C subunit SPYJRS4_RS07030 PF00391 PEP-utilising enzyme, mobile domain SPYJRS4_RS07030 PF02896 PEP-utilising enzyme, TIM barrel domain SPYJRS4_RS07030 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SPYJRS4_RS07035 PF00857 Isochorismatase family SPYJRS4_RS07040 PF08222 CodY helix-turn-helix domain SPYJRS4_RS07040 PF06018 CodY GAF-like domain SPYJRS4_RS07045 PF00155 Aminotransferase class I and II SPYJRS4_RS07060 PF00710 Asparaginase, N-terminal SPYJRS4_RS07060 PF17763 Glutaminase/Asparaginase C-terminal domain SPYJRS4_RS07070 PF00005 ABC transporter SPYJRS4_RS07075 PF00271 Helicase conserved C-terminal domain SPYJRS4_RS07075 PF00270 DEAD/DEAH box helicase SPYJRS4_RS07075 PF17191 RecG wedge domain SPYJRS4_RS07080 PF00005 ABC transporter SPYJRS4_RS07095 PF00005 ABC transporter SPYJRS4_RS07095 PF00664 ABC transporter transmembrane region SPYJRS4_RS07100 PF00005 ABC transporter SPYJRS4_RS07100 PF00664 ABC transporter transmembrane region SPYJRS4_RS07105 PF00005 ABC transporter SPYJRS4_RS07110 PF01032 FecCD transport family SPYJRS4_RS07115 PF01497 Periplasmic binding protein SPYJRS4_RS07135 PF00842 Alanine racemase, C-terminal domain SPYJRS4_RS07135 PF01168 Alanine racemase, N-terminal domain SPYJRS4_RS07140 PF01648 4'-phosphopantetheinyl transferase superfamily SPYJRS4_RS07145 PF01043 SecA preprotein cross-linking domain SPYJRS4_RS07145 PF02810 SEC-C motif SPYJRS4_RS07145 PF07517 SecA DEAD-like domain SPYJRS4_RS07145 PF07516 SecA Wing and Scaffold domain SPYJRS4_RS07150 PF13936 Helix-turn-helix domain SPYJRS4_RS07155 PF01238 Phosphomannose isomerase type I SPYJRS4_RS07160 PF00480 ROK family SPYJRS4_RS07170 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS07170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPYJRS4_RS07170 PF00367 phosphotransferase system, EIIB SPYJRS4_RS07175 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPYJRS4_RS07175 PF08244 Glycosyl hydrolases family 32 C terminal SPYJRS4_RS07180 PF00356 Bacterial regulatory proteins, lacI family SPYJRS4_RS07185 PF01029 NusB family SPYJRS4_RS07190 PF03780 Asp23 family, cell envelope-related function SPYJRS4_RS07195 PF08207 Elongation factor P (EF-P) KOW-like domain SPYJRS4_RS07195 PF01132 Elongation factor P (EF-P) OB domain SPYJRS4_RS07195 PF09285 Elongation factor P, C-terminal SPYJRS4_RS07200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPYJRS4_RS07205 PF00557 Metallopeptidase family M24 SPYJRS4_RS07205 PF01321 Creatinase/Prolidase N-terminal domain SPYJRS4_RS07210 PF17760 UvrA interaction domain SPYJRS4_RS07210 PF17755 UvrA DNA-binding domain SPYJRS4_RS07210 PF00005 ABC transporter SPYJRS4_RS07220 PF01520 N-acetylmuramoyl-L-alanine amidase SPYJRS4_RS07220 PF08460 Bacterial SH3 domain SPYJRS4_RS07220 PF05257 CHAP domain SPYJRS4_RS07335 PF04466 Phage terminase large subunit SPYJRS4_RS07335 PF17288 Terminase RNAseH like domain SPYJRS4_RS07450 PF01084 Ribosomal protein S18 SPYJRS4_RS07455 PF00436 Single-strand binding protein family SPYJRS4_RS07460 PF01250 Ribosomal protein S6 SPYJRS4_RS07470 PF14815 NUDIX domain SPYJRS4_RS07470 PF00730 HhH-GPD superfamily base excision DNA repair protein SPYJRS4_RS07480 PF00085 Thioredoxin SPYJRS4_RS07490 PF01713 Smr domain SPYJRS4_RS07490 PF00488 MutS domain V SPYJRS4_RS07505 PF01351 Ribonuclease HII SPYJRS4_RS07505 PF11858 Domain of unknown function (DUF3378) SPYJRS4_RS07510 PF10502 Signal peptidase, peptidase S26 SPYJRS4_RS07515 PF14490 Helix-hairpin-helix containing domain SPYJRS4_RS07515 PF13538 UvrD-like helicase C-terminal domain SPYJRS4_RS07515 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SPYJRS4_RS07525 PF11798 IMS family HHH motif SPYJRS4_RS07525 PF00817 impB/mucB/samB family SPYJRS4_RS07525 PF11799 impB/mucB/samB family C-terminal domain SPYJRS4_RS07530 PF02901 Pyruvate formate lyase-like SPYJRS4_RS07530 PF01228 Glycine radical SPYJRS4_RS07535 PF00144 Beta-lactamase SPYJRS4_RS07550 PF00230 Major intrinsic protein SPYJRS4_RS07555 PF07690 Major Facilitator Superfamily SPYJRS4_RS07560 PF13545 Crp-like helix-turn-helix domain SPYJRS4_RS07565 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPYJRS4_RS07565 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPYJRS4_RS07565 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPYJRS4_RS07580 PF02575 YbaB/EbfC DNA-binding family SPYJRS4_RS07585 PF07739 TipAS antibiotic-recognition domain SPYJRS4_RS07585 PF13411 MerR HTH family regulatory protein SPYJRS4_RS07590 PF11490 DNA polymerase III polC-type N-terminus II SPYJRS4_RS07590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPYJRS4_RS07590 PF14579 Helix-hairpin-helix motif SPYJRS4_RS07590 PF00929 Exonuclease SPYJRS4_RS07590 PF02811 PHP domain SPYJRS4_RS07590 PF01336 OB-fold nucleic acid binding domain SPYJRS4_RS07590 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPYJRS4_RS07595 PF08279 HTH domain SPYJRS4_RS07595 PF04394 Protein of unknown function, DUF536 SPYJRS4_RS07605 PF01791 DeoC/LacD family aldolase SPYJRS4_RS07610 PF01773 Na+ dependent nucleoside transporter N-terminus SPYJRS4_RS07610 PF07662 Na+ dependent nucleoside transporter C-terminus SPYJRS4_RS07610 PF07670 Nucleoside recognition SPYJRS4_RS07615 PF01048 Phosphorylase superfamily SPYJRS4_RS07625 PF00253 Ribosomal protein S14p/S29e SPYJRS4_RS07630 PF00814 Glycoprotease family SPYJRS4_RS07635 PF00583 Acetyltransferase (GNAT) family SPYJRS4_RS07640 PF00814 Glycoprotease family SPYJRS4_RS07645 PF07288 Protein of unknown function (DUF1447) SPYJRS4_RS07650 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPYJRS4_RS07650 PF17770 Ribonuclease J C-terminal domain SPYJRS4_RS07650 PF00753 Metallo-beta-lactamase superfamily SPYJRS4_RS07655 PF00120 Glutamine synthetase, catalytic domain SPYJRS4_RS07655 PF03951 Glutamine synthetase, beta-Grasp domain SPYJRS4_RS07660 PF13411 MerR HTH family regulatory protein SPYJRS4_RS07670 PF00162 Phosphoglycerate kinase SPYJRS4_RS07675 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SPYJRS4_RS07685 PF13684 Dihydroxyacetone kinase family SPYJRS4_RS07685 PF02734 DAK2 domain SPYJRS4_RS07690 PF03780 Asp23 family, cell envelope-related function SPYJRS4_RS07695 PF00830 Ribosomal L28 family SPYJRS4_RS07700 PF01116 Fructose-bisphosphate aldolase class-II SPYJRS4_RS07715 PF00117 Glutamine amidotransferase class-I SPYJRS4_RS07715 PF06418 CTP synthase N-terminus SPYJRS4_RS07720 PF05066 HB1, ASXL, restriction endonuclease HTH domain SPYJRS4_RS07725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SPYJRS4_RS07725 PF05697 Bacterial trigger factor protein (TF) SPYJRS4_RS07725 PF05698 Bacterial trigger factor protein (TF) C-terminus SPYJRS4_RS07730 PF00924 Mechanosensitive ion channel SPYJRS4_RS07735 PF04260 Protein of unknown function (DUF436) SPYJRS4_RS07740 PF07155 ECF-type riboflavin transporter, S component SPYJRS4_RS07745 PF08543 Phosphomethylpyrimidine kinase SPYJRS4_RS07750 PF01416 tRNA pseudouridine synthase SPYJRS4_RS07790 PF02595 Glycerate kinase family SPYJRS4_RS07795 PF18766 SWI2/SNF2 ATPase SPYJRS4_RS07795 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SPYJRS4_RS07795 PF12008 Type I restriction and modification enzyme - subunit R C terminal SPYJRS4_RS07805 PF02384 N-6 DNA Methylase SPYJRS4_RS07805 PF12161 HsdM N-terminal domain SPYJRS4_RS07815 PF00072 Response regulator receiver domain SPYJRS4_RS07815 PF00486 Transcriptional regulatory protein, C terminal SPYJRS4_RS07825 PF02687 FtsX-like permease family SPYJRS4_RS07830 PF00005 ABC transporter SPYJRS4_RS07835 PF00005 ABC transporter SPYJRS4_RS07835 PF00664 ABC transporter transmembrane region SPYJRS4_RS07845 PF04604 Type-A lantibiotic SPYJRS4_RS07850 PF00232 Glycosyl hydrolase family 1 SPYJRS4_RS07855 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS07855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS07860 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPYJRS4_RS07865 PF01791 DeoC/LacD family aldolase SPYJRS4_RS07870 PF00294 pfkB family carbohydrate kinase SPYJRS4_RS07875 PF02502 Ribose/Galactose Isomerase SPYJRS4_RS07880 PF02502 Ribose/Galactose Isomerase SPYJRS4_RS07885 PF00455 DeoR C terminal sensor domain SPYJRS4_RS07885 PF08220 DeoR-like helix-turn-helix domain SPYJRS4_RS07905 PF00380 Ribosomal protein S9/S16 SPYJRS4_RS07910 PF00572 Ribosomal protein L13 SPYJRS4_RS07915 PF01381 Helix-turn-helix SPYJRS4_RS07925 PF02645 Uncharacterised protein, DegV family COG1307 SPYJRS4_RS07935 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPYJRS4_RS07935 PF00588 SpoU rRNA Methylase family SPYJRS4_RS07945 PF00636 Ribonuclease III domain SPYJRS4_RS07950 PF01406 tRNA synthetases class I (C) catalytic domain SPYJRS4_RS07950 PF09190 DALR domain SPYJRS4_RS07965 PF00132 Bacterial transferase hexapeptide (six repeats) SPYJRS4_RS07965 PF06426 Serine acetyltransferase, N-terminal SPYJRS4_RS07975 PF00575 S1 RNA binding domain SPYJRS4_RS07975 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SPYJRS4_RS07975 PF03725 3' exoribonuclease family, domain 2 SPYJRS4_RS07975 PF01138 3' exoribonuclease family, domain 1 SPYJRS4_RS07975 PF00013 KH domain SPYJRS4_RS07980 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPYJRS4_RS07985 PF03611 PTS system sugar-specific permease component SPYJRS4_RS07990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS07995 PF08279 HTH domain SPYJRS4_RS07995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPYJRS4_RS07995 PF05043 Mga helix-turn-helix domain SPYJRS4_RS07995 PF00874 PRD domain SPYJRS4_RS07995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS08000 PF00312 Ribosomal protein S15 SPYJRS4_RS08010 PF01327 Polypeptide deformylase SPYJRS4_RS08015 PF03358 NADPH-dependent FMN reductase SPYJRS4_RS08020 PF01047 MarR family SPYJRS4_RS08025 PF11490 DNA polymerase III polC-type N-terminus II SPYJRS4_RS08025 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPYJRS4_RS08025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPYJRS4_RS08025 PF02811 PHP domain SPYJRS4_RS08025 PF00929 Exonuclease SPYJRS4_RS08025 PF14480 DNA polymerase III polC-type N-terminus I SPYJRS4_RS08030 PF03129 Anticodon binding domain SPYJRS4_RS08030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPYJRS4_RS08030 PF04073 Aminoacyl-tRNA editing domain SPYJRS4_RS08035 PF02163 Peptidase family M50 SPYJRS4_RS08035 PF13180 PDZ domain SPYJRS4_RS08045 PF01255 Putative undecaprenyl diphosphate synthase SPYJRS4_RS08050 PF02699 Preprotein translocase subunit SPYJRS4_RS08060 PF00128 Alpha amylase, catalytic domain SPYJRS4_RS08060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPYJRS4_RS08060 PF17999 Pullulanase N1-terminal domain SPYJRS4_RS08065 PF00128 Alpha amylase, catalytic domain SPYJRS4_RS08070 PF03459 TOBE domain SPYJRS4_RS08070 PF17912 MalK OB fold domain SPYJRS4_RS08070 PF00005 ABC transporter SPYJRS4_RS08075 PF13556 PucR C-terminal helix-turn-helix domain SPYJRS4_RS08080 PF02821 Staphylokinase/Streptokinase family SPYJRS4_RS08085 PF02580 D-Tyr-tRNA(Tyr) deacylase SPYJRS4_RS08090 PF04607 Region found in RelA / SpoT proteins SPYJRS4_RS08090 PF13291 ACT domain SPYJRS4_RS08090 PF02824 TGS domain SPYJRS4_RS08095 PF00746 LPXTG cell wall anchor motif SPYJRS4_RS08095 PF04650 YSIRK type signal peptide SPYJRS4_RS08100 PF07972 NrdI Flavodoxin like SPYJRS4_RS08105 PF03372 Endonuclease/Exonuclease/phosphatase family SPYJRS4_RS08110 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS08110 PF00367 phosphotransferase system, EIIB SPYJRS4_RS08110 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPYJRS4_RS08115 PF04452 RNA methyltransferase SPYJRS4_RS08130 PF01425 Amidase SPYJRS4_RS08135 PF00425 chorismate binding enzyme SPYJRS4_RS08135 PF04715 Anthranilate synthase component I, N terminal region SPYJRS4_RS08140 PF00117 Glutamine amidotransferase class-I SPYJRS4_RS08145 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPYJRS4_RS08145 PF12002 MgsA AAA+ ATPase C terminal SPYJRS4_RS08145 PF16193 AAA C-terminal domain SPYJRS4_RS08170 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPYJRS4_RS08170 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPYJRS4_RS08175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPYJRS4_RS08180 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS08185 PF00528 Binding-protein-dependent transport system inner membrane component SPYJRS4_RS08190 PF12558 ATP-binding cassette cobalt transporter SPYJRS4_RS08190 PF00005 ABC transporter SPYJRS4_RS08195 PF00005 ABC transporter SPYJRS4_RS08200 PF05532 CsbD-like SPYJRS4_RS08210 PF01297 Zinc-uptake complex component A periplasmic SPYJRS4_RS08215 PF02225 PA domain SPYJRS4_RS08215 PF00082 Subtilase family SPYJRS4_RS08215 PF06280 Fn3-like domain SPYJRS4_RS08220 PF00746 LPXTG cell wall anchor motif SPYJRS4_RS08220 PF04650 YSIRK type signal peptide SPYJRS4_RS08225 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPYJRS4_RS08225 PF05043 Mga helix-turn-helix domain SPYJRS4_RS08225 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SPYJRS4_RS08235 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPYJRS4_RS08235 PF05257 CHAP domain SPYJRS4_RS08240 PF13493 Domain of unknown function (DUF4118) SPYJRS4_RS08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPYJRS4_RS08240 PF00512 His Kinase A (phospho-acceptor) domain SPYJRS4_RS08240 PF02702 Osmosensitive K+ channel His kinase sensor domain SPYJRS4_RS08245 PF00486 Transcriptional regulatory protein, C terminal SPYJRS4_RS08245 PF00072 Response regulator receiver domain SPYJRS4_RS08250 PF12704 MacB-like periplasmic core domain SPYJRS4_RS08250 PF02687 FtsX-like permease family SPYJRS4_RS08255 PF00005 ABC transporter SPYJRS4_RS08280 PF13145 PPIC-type PPIASE domain SPYJRS4_RS08290 PF01640 Peptidase C10 family SPYJRS4_RS08290 PF13734 Spi protease inhibitor SPYJRS4_RS08305 PF04608 Phosphatidylglycerophosphatase A SPYJRS4_RS08310 PF00465 Iron-containing alcohol dehydrogenase SPYJRS4_RS08315 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPYJRS4_RS08320 PF02901 Pyruvate formate lyase-like SPYJRS4_RS08320 PF01228 Glycine radical SPYJRS4_RS08325 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS08330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPYJRS4_RS08335 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPYJRS4_RS08340 PF04198 Putative sugar-binding domain SPYJRS4_RS08345 PF08220 DeoR-like helix-turn-helix domain SPYJRS4_RS08345 PF00455 DeoR C terminal sensor domain SPYJRS4_RS08350 PF04055 Radical SAM superfamily SPYJRS4_RS08365 PF00905 Penicillin binding protein transpeptidase domain SPYJRS4_RS08365 PF00912 Transglycosylase SPYJRS4_RS08380 PF01479 S4 domain SPYJRS4_RS08380 PF00849 RNA pseudouridylate synthase SPYJRS4_RS08390 PF03577 Peptidase family C69 SPYJRS4_RS08400 PF00118 TCP-1/cpn60 chaperonin family SPYJRS4_RS08405 PF00166 Chaperonin 10 Kd subunit SPYJRS4_RS08410 PF02861 Clp amino terminal domain, pathogenicity island component SPYJRS4_RS08410 PF10431 C-terminal, D2-small domain, of ClpB protein SPYJRS4_RS08410 PF17871 AAA lid domain SPYJRS4_RS08410 PF07724 AAA domain (Cdc48 subfamily) SPYJRS4_RS08410 PF00004 ATPase family associated with various cellular activities (AAA) SPYJRS4_RS08415 PF05848 CtsR N-terminal HTH domain SPYJRS4_RS08415 PF17727 CtsR C-terminal dimerization domain SPYJRS4_RS08420 PF00313 'Cold-shock' DNA-binding domain SPYJRS4_RS08430 PF00578 AhpC/TSA family SPYJRS4_RS08435 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPYJRS4_RS08435 PF13192 Thioredoxin domain SPYJRS4_RS08440 PF01979 Amidohydrolase family SPYJRS4_RS08445 PF01175 Urocanase Rossmann-like domain SPYJRS4_RS08445 PF17392 Urocanase C-terminal domain SPYJRS4_RS08445 PF17391 Urocanase N-terminal domain SPYJRS4_RS08450 PF07837 Formiminotransferase domain, N-terminal subdomain SPYJRS4_RS08450 PF02971 Formiminotransferase domain SPYJRS4_RS08455 PF04961 Formiminotransferase-cyclodeaminase SPYJRS4_RS08460 PF01268 Formate--tetrahydrofolate ligase SPYJRS4_RS08470 PF13520 Amino acid permease SPYJRS4_RS08475 PF00221 Aromatic amino acid lyase SPYJRS4_RS08480 PF00491 Arginase family SPYJRS4_RS08490 PF13936 Helix-turn-helix domain SPYJRS4_RS08495 PF00318 Ribosomal protein S2 SPYJRS4_RS08500 PF00889 Elongation factor TS SPYJRS4_RS08505 PF05649 Peptidase family M13 SPYJRS4_RS08505 PF01431 Peptidase family M13 SPYJRS4_RS08510 PF16657 Maltogenic Amylase, C-terminal domain SPYJRS4_RS08510 PF00128 Alpha amylase, catalytic domain SPYJRS4_RS08515 PF02378 Phosphotransferase system, EIIC SPYJRS4_RS08515 PF00367 phosphotransferase system, EIIB SPYJRS4_RS08520 PF00392 Bacterial regulatory proteins, gntR family SPYJRS4_RS08520 PF07702 UTRA domain SPYJRS4_RS08525 PF01638 HxlR-like helix-turn-helix SPYJRS4_RS08530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPYJRS4_RS08535 PF03883 Peroxide stress protein YaaA SPYJRS4_RS08550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPYJRS4_RS08555 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPYJRS4_RS08555 PF03477 ATP cone domain SPYJRS4_RS08565 PF06949 Protein of unknown function (DUF1292) SPYJRS4_RS08570 PF03652 Holliday junction resolvase SPYJRS4_RS08575 PF06135 IreB regulatory phosphoprotein SPYJRS4_RS08580 PF03960 ArsC family SPYJRS4_RS08585 PF00154 recA bacterial DNA recombination protein SPYJRS4_RS08590 PF00994 Probable molybdopterin binding domain SPYJRS4_RS08590 PF18146 Damage-inducible protein CinA KH domain SPYJRS4_RS08590 PF02464 Competence-damaged protein SPYJRS4_RS08595 PF13673 Acetyltransferase (GNAT) domain SPYJRS4_RS08595 PF13302 Acetyltransferase (GNAT) domain SPYJRS4_RS08595 PF00117 Glutamine amidotransferase class-I SPYJRS4_RS08595 PF03352 Methyladenine glycosylase SPYJRS4_RS08595 PF00958 GMP synthase C terminal domain SPYJRS4_RS08600 PF07499 RuvA, C-terminal domain SPYJRS4_RS08600 PF01330 RuvA N terminal domain SPYJRS4_RS08610 PF01119 DNA mismatch repair protein, C-terminal domain SPYJRS4_RS08610 PF08676 MutL C terminal dimerisation domain SPYJRS4_RS08615 PF01624 MutS domain I SPYJRS4_RS08615 PF05190 MutS family domain IV SPYJRS4_RS08615 PF05192 MutS domain III SPYJRS4_RS08615 PF00488 MutS domain V SPYJRS4_RS08615 PF05188 MutS domain II SPYJRS4_RS08620 PF01316 Arginine repressor, DNA binding domain SPYJRS4_RS08620 PF02863 Arginine repressor, C-terminal domain SPYJRS4_RS08625 PF05746 DALR anticodon binding domain SPYJRS4_RS08625 PF00750 tRNA synthetases class I (R) SPYJRS4_RS08625 PF03485 Arginyl tRNA synthetase N terminal domain SPYJRS4_RS08635 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPYJRS4_RS08635 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPYJRS4_RS08640 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPYJRS4_RS08640 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPYJRS4_RS08645 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPYJRS4_RS08645 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPYJRS4_RS08650 PF00152 tRNA synthetases class II (D, K and N) SPYJRS4_RS08650 PF01336 OB-fold nucleic acid binding domain SPYJRS4_RS08650 PF02938 GAD domain SPYJRS4_RS08655 PF03129 Anticodon binding domain SPYJRS4_RS08655 PF13393 Histidyl-tRNA synthetase SPYJRS4_RS08660 PF01783 Ribosomal L32p protein family SPYJRS4_RS08665 PF00471 Ribosomal protein L33 SPYJRS4_RS08680 PF01022 Bacterial regulatory protein, arsR family SPYJRS4_RS08715 PF00293 NUDIX domain SPYJRS4_RS08720 PF03551 Transcriptional regulator PadR-like family SPYJRS4_RS08745 PF00163 Ribosomal protein S4/S9 N-terminal domain SPYJRS4_RS08745 PF01479 S4 domain SPYJRS4_RS08755 PF03796 DnaB-like helicase C terminal domain SPYJRS4_RS08755 PF00772 DnaB-like helicase N terminal domain SPYJRS4_RS08760 PF01281 Ribosomal protein L9, N-terminal domain SPYJRS4_RS08760 PF03948 Ribosomal protein L9, C-terminal domain SPYJRS4_RS08765 PF01368 DHH family SPYJRS4_RS08765 PF02272 DHHA1 domain SPYJRS4_RS08770 PF01134 Glucose inhibited division protein A SPYJRS4_RS08770 PF13932 GidA associated domain SPYJRS4_RS08780 PF03315 Serine dehydratase beta chain SPYJRS4_RS08780 PF01842 ACT domain SPYJRS4_RS08785 PF03313 Serine dehydratase alpha chain SPYJRS4_RS08790 PF06737 Transglycosylase-like domain SPYJRS4_RS08795 PF02361 Cobalt transport protein SPYJRS4_RS08800 PF00005 ABC transporter SPYJRS4_RS08805 PF00005 ABC transporter SPYJRS4_RS08810 PF01066 CDP-alcohol phosphatidyltransferase SPYJRS4_RS08820 PF05193 Peptidase M16 inactive domain SPYJRS4_RS08820 PF00675 Insulinase (Peptidase family M16) SPYJRS4_RS08825 PF05193 Peptidase M16 inactive domain SPYJRS4_RS08830 PF13936 Helix-turn-helix domain SPYJRS4_RS08835 PF00535 Glycosyl transferase family 2 SPYJRS4_RS08840 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPYJRS4_RS08840 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SPYJRS4_RS08840 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPYJRS4_RS08845 PF00483 Nucleotidyl transferase SPYJRS4_RS08855 PF02463 RecF/RecN/SMC N terminal domain SPYJRS4_RS08860 PF06800 Sugar transport protein SPYJRS4_RS08865 PF00478 IMP dehydrogenase / GMP reductase domain SPYJRS4_RS08865 PF00571 CBS domain SPYJRS4_RS08870 PF00579 tRNA synthetases class I (W and Y) SPYJRS4_RS08875 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPYJRS4_RS08875 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPYJRS4_RS08880 PF12848 ABC transporter SPYJRS4_RS08880 PF00005 ABC transporter SPYJRS4_RS08900 PF13936 Helix-turn-helix domain SPYJRS4_RS08915 PF02590 Predicted SPOUT methyltransferase SPYJRS4_RS08920 PF13180 PDZ domain SPYJRS4_RS08925 PF17762 HTH domain found in ParB protein SPYJRS4_RS08925 PF02195 ParB-like nuclease domain