CCX85_RS00005	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CCX85_RS00010	SM00480	DNA polymerase III beta subunit
CCX85_RS00030	SM00487	DEAD-like helicases superfamily
CCX85_RS00030	SM00490	helicase superfamily c-terminal domain
CCX85_RS00030	SM00982	CCX85_RS00030
CCX85_RS00030	SM01058	CarD-like/TRCF domain
CCX85_RS00035	SM00363	S4 RNA-binding domain
CCX85_RS00060	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS00245	SM01400	CCX85_RS00245
CCX85_RS00270	SM01211	CCX85_RS00270
CCX85_RS00290	SM00798	AICARFT/IMPCHase bienzyme
CCX85_RS00290	SM00851	MGS-like domain
CCX85_RS00300	SM01209	CCX85_RS00300
CCX85_RS00300	SM01210	CCX85_RS00300
CCX85_RS00305	SM01001	AIR carboxylase
CCX85_RS00320	SM00998	Adenylosuccinate lyase C-terminus
CCX85_RS00325	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS00330	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS00335	SM00226	Low molecular weight phosphatase family
CCX85_RS00340	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
CCX85_RS00355	SM00829	Enoylreductase
CCX85_RS00365	SM01403	CCX85_RS00365
CCX85_RS00385	SM01382	CCX85_RS00385
CCX85_RS00385	SM01383	CCX85_RS00385
CCX85_RS00400	SM00322	K homology RNA-binding domain
CCX85_RS00420	SM01374	CCX85_RS00420
CCX85_RS00425	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CCX85_RS00480	SM00316	Ribosomal protein S1-like RNA-binding domain
CCX85_RS00500	SM00662	RNA polymerases D
CCX85_RS00610	SM00347	helix_turn_helix multiple antibiotic resistance protein
CCX85_RS00615	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS00630	SM00363	S4 RNA-binding domain
CCX85_RS00645	SM00663	RNA polymerase I subunit A N-terminus
CCX85_RS00785	SM00342	helix_turn_helix, arabinose operon control protein
CCX85_RS00815	SM00882	Coenzyme A transferase
CCX85_RS00820	SM00882	Coenzyme A transferase
CCX85_RS00895	SM00788	Adenylosuccinate synthetase
CCX85_RS00905	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CCX85_RS00905	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CCX85_RS00965	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CCX85_RS00975	SM01007	Class II Aldolase and Adducin N-terminal domain
CCX85_RS00995	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01005	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CCX85_RS01005	SM00474	3'-5' exonuclease
CCX85_RS01005	SM00475	5'-3' exonuclease
CCX85_RS01005	SM00482	DNA polymerase A domain
CCX85_RS01010	SM00881	CoA binding domain
CCX85_RS01045	SM00849	Metallo-beta-lactamase superfamily
CCX85_RS01055	SM00460	Transglutaminase/protease-like homologues
CCX85_RS01095	SM00347	helix_turn_helix multiple antibiotic resistance protein
CCX85_RS01100	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01105	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01120	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01125	SM00947	Carbonic anhydrase
CCX85_RS01150	SM00448	cheY-homologous receiver domain
CCX85_RS01150	SM00850	LytTr DNA-binding domain
CCX85_RS01165	SM00393	Putative single-stranded nucleic acids-binding domain
CCX85_RS01165	SM01245	CCX85_RS01165
CCX85_RS01200	SM01130	CCX85_RS01200
CCX85_RS01225	SM00650	Ribosomal RNA adenine dimethylases
CCX85_RS01240	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CCX85_RS01275	SM00838	Elongation factor G C-terminus
CCX85_RS01275	SM00889	Elongation factor G, domain IV
CCX85_RS01280	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CCX85_RS01290	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01295	SM00062	Bacterial periplasmic substrate-binding proteins
CCX85_RS01320	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01350	SM00936	Penicillin-binding protein 5, C-terminal domain 
CCX85_RS01370	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01375	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01430	SM01103	CCX85_RS01430
CCX85_RS01440	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CCX85_RS01470	SM00062	Bacterial periplasmic substrate-binding proteins
CCX85_RS01480	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01480	SM00930	CCX85_RS01480
CCX85_RS01530	SM00448	cheY-homologous receiver domain
CCX85_RS01530	SM00862	Transcriptional regulatory protein, C terminal
CCX85_RS01535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CCX85_RS01535	SM00387	Histidine kinase-like ATPases
CCX85_RS01535	SM00388	His Kinase A (phosphoacceptor) domain
CCX85_RS01560	SM00487	DEAD-like helicases superfamily
CCX85_RS01560	SM00490	helicase superfamily c-terminal domain
CCX85_RS01600	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CCX85_RS01635	SM00116	Domain in cystathionine beta-synthase and other proteins.
CCX85_RS01655	SM00363	S4 RNA-binding domain
CCX85_RS01660	SM01234	CCX85_RS01660
CCX85_RS01675	SM00014	Acid phosphatase homologues
CCX85_RS01680	SM00729	Elongator protein 3, MiaB family, Radical SAM
CCX85_RS01690	SM01091	Transporter associated domain
CCX85_RS01700	SM01131	CCX85_RS01700
CCX85_RS01725	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01930	SM00529	Helix-turn-helix diphteria tox regulatory element
CCX85_RS01930	SM00899	CCX85_RS01930
CCX85_RS01940	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01955	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS01955	SM00843	CCX85_RS01955
CCX85_RS01965	SM00649	Ribosomal protein L11/L12
CCX85_RS02000	SM00257	Lysin motif
CCX85_RS02015	SM00986	Uracil DNA glycosylase superfamily
CCX85_RS02015	SM00987	UreE urease accessory protein, C-terminal domain 
CCX85_RS02095	SM00448	cheY-homologous receiver domain
CCX85_RS02095	SM00850	LytTr DNA-binding domain
CCX85_RS02115	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS02160	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS02165	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CCX85_RS02165	SM01232	CCX85_RS02165
CCX85_RS02195	SM00316	Ribosomal protein S1-like RNA-binding domain
CCX85_RS02195	SM00955	CCX85_RS02195
CCX85_RS02245	SM00354	helix_turn _helix lactose operon repressor
CCX85_RS02260	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CCX85_RS02300	SM00448	cheY-homologous receiver domain
CCX85_RS02300	SM00862	Transcriptional regulatory protein, C terminal
CCX85_RS02305	SM00091	PAS domain
CCX85_RS02305	SM00387	Histidine kinase-like ATPases
CCX85_RS02305	SM00388	His Kinase A (phosphoacceptor) domain
CCX85_RS02310	SM00849	Metallo-beta-lactamase superfamily
CCX85_RS02315	SM00358	Double-stranded RNA binding motif
CCX85_RS02315	SM00535	Ribonuclease III family
CCX85_RS02320	SM00968	SMC proteins Flexible Hinge Domain
CCX85_RS02370	SM00984	UDP binding domain
CCX85_RS02500	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS02500	SM00962	SRP54-type protein, GTPase domain
CCX85_RS02500	SM00963	SRP54-type protein, helical bundle domain
CCX85_RS02510	SM01061	CAT RNA binding domain
CCX85_RS02540	SM00316	Ribosomal protein S1-like RNA-binding domain
CCX85_RS02540	SM00732	Likely ribonuclease with RNase H fold.
CCX85_RS02605	SM00855	Phosphoglycerate mutase family
CCX85_RS02685	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CCX85_RS02695	SM00831	Cation transporter/ATPase, N-terminus
CCX85_RS02700	SM00354	helix_turn _helix lactose operon repressor
CCX85_RS02770	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS02780	SM00849	Metallo-beta-lactamase superfamily
CCX85_RS02790	SM00479	CCX85_RS02790
CCX85_RS02790	SM00487	DEAD-like helicases superfamily
CCX85_RS02790	SM00491	CCX85_RS02790
CCX85_RS02830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS02830	SM00866	CCX85_RS02830
CCX85_RS02855	SM00830	Chorismate mutase type II
CCX85_RS02885	SM00387	Histidine kinase-like ATPases
CCX85_RS02885	SM00433	TopoisomeraseII
CCX85_RS02900	SM01192	CCX85_RS02900
CCX85_RS02900	SM01193	CCX85_RS02900
CCX85_RS02955	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS02985	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CCX85_RS02985	SM00292	breast cancer carboxy-terminal domain
CCX85_RS02985	SM00532	Ligase N family
CCX85_RS02990	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CCX85_RS03025	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03060	SM00873	B3/4 domain
CCX85_RS03060	SM00874	tRNA synthetase B5 domain
CCX85_RS03060	SM00896	Ferredoxin-fold anticodon binding domain
CCX85_RS03080	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03100	SM00062	Bacterial periplasmic substrate-binding proteins
CCX85_RS03100	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CCX85_RS03115	SM00400	zinc finger
CCX85_RS03115	SM00493	CCX85_RS03115
CCX85_RS03150	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03275	SM00981	CCX85_RS03275
CCX85_RS03280	SM00854	Bacterial capsule synthesis protein PGA_cap
CCX85_RS03310	SM00363	S4 RNA-binding domain
CCX85_RS03330	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CCX85_RS03340	SM00851	MGS-like domain
CCX85_RS03340	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CCX85_RS03340	SM01209	CCX85_RS03340
CCX85_RS03350	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03420	SM00420	helix_turn_helix, Deoxyribose operon repressor
CCX85_RS03420	SM01134	CCX85_RS03420
CCX85_RS03435	SM00047	Lysozyme subfamily 2
CCX85_RS03440	SM00047	Lysozyme subfamily 2
CCX85_RS03480	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03500	SM00954	Region found in RelA / SpoT proteins
CCX85_RS03505	SM00448	cheY-homologous receiver domain
CCX85_RS03505	SM00862	Transcriptional regulatory protein, C terminal
CCX85_RS03510	SM00387	Histidine kinase-like ATPases
CCX85_RS03510	SM00388	His Kinase A (phosphoacceptor) domain
CCX85_RS03560	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03560	SM00994	ClpX C4-type zinc finger
CCX85_RS03560	SM01086	C-terminal, D2-small domain, of ClpB protein
CCX85_RS03575	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03575	SM01086	C-terminal, D2-small domain, of ClpB protein
CCX85_RS03620	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CCX85_RS03635	SM00062	Bacterial periplasmic substrate-binding proteins
CCX85_RS03645	SM00986	Uracil DNA glycosylase superfamily
CCX85_RS03645	SM00987	UreE urease accessory protein, C-terminal domain 
CCX85_RS03655	SM01207	CCX85_RS03655
CCX85_RS03660	SM00387	Histidine kinase-like ATPases
CCX85_RS03660	SM00433	TopoisomeraseII
CCX85_RS03670	SM00434	DNA Topoisomerase IV
CCX85_RS03695	SM00316	Ribosomal protein S1-like RNA-binding domain
CCX85_RS03710	SM00450	Rhodanese Homology Domain
CCX85_RS03775	SM00478	endonuclease III
CCX85_RS03775	SM00525	CCX85_RS03775
CCX85_RS03820	SM00028	Tetratricopeptide repeats
CCX85_RS03845	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03850	SM00849	Metallo-beta-lactamase superfamily
CCX85_RS03865	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS03875	SM00861	Transketolase, pyrimidine binding domain
CCX85_RS03940	SM00729	Elongator protein 3, MiaB family, Radical SAM
CCX85_RS03995	SM00838	Elongation factor G C-terminus
CCX85_RS04040	SM00342	helix_turn_helix, arabinose operon control protein
CCX85_RS04040	SM00448	cheY-homologous receiver domain
CCX85_RS04055	SM00465	GIY-YIG type nucleases (URI domain)
CCX85_RS04085	SM00936	Penicillin-binding protein 5, C-terminal domain 
CCX85_RS04110	SM00905	Dihydroneopterin aldolase
CCX85_RS04125	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04145	SM00448	cheY-homologous receiver domain
CCX85_RS04160	SM00919	Malic enzyme, NAD binding domain
CCX85_RS04160	SM01274	CCX85_RS04160
CCX85_RS04200	SM00881	CoA binding domain
CCX85_RS04215	SM01400	CCX85_RS04215
CCX85_RS04220	SM01118	CCX85_RS04220
CCX85_RS04225	SM00954	Region found in RelA / SpoT proteins
CCX85_RS04255	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04265	SM01240	CCX85_RS04265
CCX85_RS04300	SM00937	CCX85_RS04300
CCX85_RS04335	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04340	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04355	SM00434	DNA Topoisomerase IV
CCX85_RS04380	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CCX85_RS04410	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CCX85_RS04410	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CCX85_RS04410	SM00493	CCX85_RS04410
CCX85_RS04445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS04445	SM00895	CCX85_RS04445
CCX85_RS04495	SM00764	Citrate lyase ligase C-terminal domain
CCX85_RS04510	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS04515	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04515	SM00962	SRP54-type protein, GTPase domain
CCX85_RS04515	SM00963	SRP54-type protein, helical bundle domain
CCX85_RS04525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS04525	SM00866	CCX85_RS04525
CCX85_RS04545	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS04575	SM00155	Phospholipase D. Active site motifs.
CCX85_RS04595	SM00506	Appr-1"-p processing enzyme
CCX85_RS04650	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04680	SM00387	Histidine kinase-like ATPases
CCX85_RS04680	SM00388	His Kinase A (phosphoacceptor) domain
CCX85_RS04685	SM00448	cheY-homologous receiver domain
CCX85_RS04685	SM00862	Transcriptional regulatory protein, C terminal
CCX85_RS04705	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04710	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04750	SM00904	Riboflavin kinase
CCX85_RS04780	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS04845	SM00062	Bacterial periplasmic substrate-binding proteins
CCX85_RS04850	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04885	SM00481	DNA polymerase alpha chain like domain
CCX85_RS04890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS04895	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS04950	SM00047	Lysozyme subfamily 2
CCX85_RS05080	SM01022	CCX85_RS05080
CCX85_RS05090	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS05095	SM00470	ParB-like nuclease domain
CCX85_RS05145	SM00990	CCX85_RS05145
CCX85_RS05150	SM00885	D5 N terminal like
CCX85_RS05155	SM00942	Primase C terminal 1 (PriCT-1)
CCX85_RS05155	SM00943	Bifunctional DNA primase/polymerase, N-terminal
CCX85_RS05165	SM00490	helicase superfamily c-terminal domain
CCX85_RS05180	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS05190	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS05215	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS05230	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS05260	SM00354	helix_turn _helix lactose operon repressor
CCX85_RS05325	SM00487	DEAD-like helicases superfamily
CCX85_RS05325	SM00490	helicase superfamily c-terminal domain
CCX85_RS05330	SM00062	Bacterial periplasmic substrate-binding proteins
CCX85_RS05330	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CCX85_RS05335	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS05420	SM00363	S4 RNA-binding domain
CCX85_RS05450	SM00857	Resolvase, N terminal domain
CCX85_RS05520	SM00889	Elongation factor G, domain IV
CCX85_RS05565	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS05600	SM00387	Histidine kinase-like ATPases
CCX85_RS05600	SM00388	His Kinase A (phosphoacceptor) domain
CCX85_RS05605	SM00448	cheY-homologous receiver domain
CCX85_RS05605	SM00862	Transcriptional regulatory protein, C terminal
CCX85_RS05610	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS05640	SM00487	DEAD-like helicases superfamily
CCX85_RS05640	SM00490	helicase superfamily c-terminal domain
CCX85_RS05650	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CCX85_RS05650	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CCX85_RS05650	SM00493	CCX85_RS05650
CCX85_RS05775	SM00116	Domain in cystathionine beta-synthase and other proteins.
CCX85_RS05800	SM00364	Leucine-rich repeats, bacterial type
CCX85_RS05800	SM00365	Leucine-rich repeat, SDS22-like subfamily
CCX85_RS05815	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS05840	SM00487	DEAD-like helicases superfamily
CCX85_RS05840	SM00490	helicase superfamily c-terminal domain
CCX85_RS05905	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS05910	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CCX85_RS05940	SM00363	S4 RNA-binding domain
CCX85_RS05985	SM00849	Metallo-beta-lactamase superfamily
CCX85_RS05990	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CCX85_RS05995	SM00563	Phosphate acyltransferases
CCX85_RS06015	SM00487	DEAD-like helicases superfamily
CCX85_RS06015	SM00490	helicase superfamily c-terminal domain
CCX85_RS06045	SM00493	CCX85_RS06045
CCX85_RS06070	SM00855	Phosphoglycerate mutase family
CCX85_RS06085	SM00411	bacterial (prokaryotic) histone like domain
CCX85_RS06120	SM00363	S4 RNA-binding domain
CCX85_RS06155	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS06170	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS06170	SM01086	C-terminal, D2-small domain, of ClpB protein
CCX85_RS06195	SM00363	S4 RNA-binding domain
CCX85_RS06215	SM00864	Tubulin/FtsZ family, GTPase domain
CCX85_RS06215	SM00865	Tubulin/FtsZ family, C-terminal domain
CCX85_RS06220	SM00842	Cell division protein FtsA
CCX85_RS06245	SM00838	Elongation factor G C-terminus
CCX85_RS06250	SM00450	Rhodanese Homology Domain
CCX85_RS06285	SM00354	helix_turn _helix lactose operon repressor
CCX85_RS06340	SM00419	helix_turn_helix, cAMP Regulatory protein
CCX85_RS06350	SM00873	B3/4 domain
CCX85_RS06360	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CCX85_RS06360	SM00387	Histidine kinase-like ATPases
CCX85_RS06365	SM00342	helix_turn_helix, arabinose operon control protein
CCX85_RS06365	SM00448	cheY-homologous receiver domain
CCX85_RS06480	SM00342	helix_turn_helix, arabinose operon control protein
CCX85_RS06480	SM00448	cheY-homologous receiver domain
CCX85_RS06485	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CCX85_RS06525	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS06530	SM01149	CCX85_RS06530
CCX85_RS06535	SM00872	Alpha mannosidase, middle domain
CCX85_RS06645	SM00487	DEAD-like helicases superfamily
CCX85_RS06645	SM00490	helicase superfamily c-terminal domain
CCX85_RS06660	SM00316	Ribosomal protein S1-like RNA-binding domain
CCX85_RS06670	SM00421	helix_turn_helix, Lux Regulon
CCX85_RS06670	SM00448	cheY-homologous receiver domain
CCX85_RS06675	SM00387	Histidine kinase-like ATPases
CCX85_RS06685	SM00220	Serine/Threonine protein kinases, catalytic domain
CCX85_RS06685	SM00740	CCX85_RS06685
CCX85_RS06690	SM00331	Sigma factor PP2C-like phosphatases
CCX85_RS06690	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CCX85_RS06705	SM00487	DEAD-like helicases superfamily
CCX85_RS06705	SM00490	helicase superfamily c-terminal domain
CCX85_RS06710	SM01409	CCX85_RS06710
CCX85_RS06715	SM00072	Guanylate kinase homologues.
CCX85_RS06720	SM00322	K homology RNA-binding domain
CCX85_RS06720	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CCX85_RS06735	SM00882	Coenzyme A transferase
CCX85_RS06740	SM00882	Coenzyme A transferase
CCX85_RS06765	SM00981	CCX85_RS06765
CCX85_RS06825	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS06835	SM00487	DEAD-like helicases superfamily
CCX85_RS06835	SM00490	helicase superfamily c-terminal domain
CCX85_RS06845	SM00740	CCX85_RS06845
CCX85_RS06880	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS06890	SM00861	Transketolase, pyrimidine binding domain
CCX85_RS06995	SM01133	CCX85_RS06995
CCX85_RS07035	SM00420	helix_turn_helix, Deoxyribose operon repressor
CCX85_RS07035	SM01134	CCX85_RS07035
CCX85_RS07085	SM00322	K homology RNA-binding domain
CCX85_RS07115	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07190	SM00878	Biotin carboxylase C-terminal domain
CCX85_RS07205	SM00825	Beta-ketoacyl synthase
CCX85_RS07210	SM00822	CCX85_RS07210
CCX85_RS07215	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CCX85_RS07235	SM00347	helix_turn_helix multiple antibiotic resistance protein
CCX85_RS07245	SM00271	DnaJ molecular chaperone homology domain
CCX85_RS07265	SM00047	Lysozyme subfamily 2
CCX85_RS07275	SM00855	Phosphoglycerate mutase family
CCX85_RS07290	SM00845	GatB domain
CCX85_RS07340	SM00870	CCX85_RS07340
CCX85_RS07350	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07355	SM00487	DEAD-like helicases superfamily
CCX85_RS07355	SM00490	helicase superfamily c-terminal domain
CCX85_RS07365	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07380	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07385	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07390	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07410	SM00365	Leucine-rich repeat, SDS22-like subfamily
CCX85_RS07410	SM00369	Leucine-rich repeats, typical (most populated) subfamily
CCX85_RS07410	SM00725	NEAr Transporter domain
CCX85_RS07420	SM01005	Alanine racemase, C-terminal domain
CCX85_RS07430	SM00957	SecA DEAD-like domain
CCX85_RS07430	SM00958	SecA preprotein cross-linking domain
CCX85_RS07455	SM00640	Glycosyl hydrolases family 32
CCX85_RS07460	SM00354	helix_turn _helix lactose operon repressor
CCX85_RS07475	SM00841	Elongation factor P, C-terminal
CCX85_RS07475	SM01185	CCX85_RS07475
CCX85_RS07490	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07525	SM00478	endonuclease III
CCX85_RS07530	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS07540	SM00014	Acid phosphatase homologues
CCX85_RS07545	SM00463	Small MutS-related domain
CCX85_RS07545	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CCX85_RS07545	SM00534	ATPase domain of DNA mismatch repair MUTS family
CCX85_RS07570	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07625	SM00419	helix_turn_helix, cAMP Regulatory protein
CCX85_RS07630	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
CCX85_RS07630	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
CCX85_RS07635	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS07640	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS07650	SM00422	helix_turn_helix, mercury resistance
CCX85_RS07655	SM00479	CCX85_RS07655
CCX85_RS07670	SM01133	CCX85_RS07670
CCX85_RS07685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS07715	SM00849	Metallo-beta-lactamase superfamily
CCX85_RS07720	SM01230	CCX85_RS07720
CCX85_RS07725	SM00422	helix_turn_helix, mercury resistance
CCX85_RS07745	SM00244	prohibitin homologues
CCX85_RS07750	SM01120	CCX85_RS07750
CCX85_RS07750	SM01121	CCX85_RS07750
CCX85_RS07860	SM00487	DEAD-like helicases superfamily
CCX85_RS07880	SM00421	helix_turn_helix, Lux Regulon
CCX85_RS07880	SM00448	cheY-homologous receiver domain
CCX85_RS07895	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07900	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS07935	SM01133	CCX85_RS07935
CCX85_RS07955	SM00420	helix_turn_helix, Deoxyribose operon repressor
CCX85_RS07955	SM01134	CCX85_RS07955
CCX85_RS08000	SM00530	Helix-turn-helix XRE-family like proteins 
CCX85_RS08020	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CCX85_RS08035	SM00840	CCX85_RS08035
CCX85_RS08060	SM00316	Ribosomal protein S1-like RNA-binding domain
CCX85_RS08060	SM00322	K homology RNA-binding domain
CCX85_RS08085	SM01387	CCX85_RS08085
CCX85_RS08110	SM00347	helix_turn_helix multiple antibiotic resistance protein
CCX85_RS08115	SM00479	CCX85_RS08115
CCX85_RS08115	SM00481	DNA polymerase alpha chain like domain
CCX85_RS08140	SM01323	CCX85_RS08140
CCX85_RS08150	SM00642	Alpha-amylase domain
CCX85_RS08160	SM00642	Alpha-amylase domain
CCX85_RS08165	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08185	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CCX85_RS08185	SM00954	Region found in RelA / SpoT proteins
CCX85_RS08235	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08275	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08280	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08345	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CCX85_RS08345	SM00387	Histidine kinase-like ATPases
CCX85_RS08345	SM00388	His Kinase A (phosphoacceptor) domain
CCX85_RS08350	SM00448	cheY-homologous receiver domain
CCX85_RS08350	SM00862	Transcriptional regulatory protein, C terminal
CCX85_RS08360	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08420	SM00892	DNA/RNA non-specific endonuclease
CCX85_RS08465	SM00420	helix_turn_helix, Deoxyribose operon repressor
CCX85_RS08465	SM01134	CCX85_RS08465
CCX85_RS08535	SM00883	Chaperonin 10 Kd subunit
CCX85_RS08540	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08540	SM01086	C-terminal, D2-small domain, of ClpB protein
CCX85_RS08550	SM00357	Cold shock protein domain
CCX85_RS08580	SM01221	CCX85_RS08580
CCX85_RS08580	SM01222	CCX85_RS08580
CCX85_RS08615	SM00028	Tetratricopeptide repeats
CCX85_RS08615	SM01043	Bacterial transcriptional activator domain
CCX85_RS08635	SM00642	Alpha-amylase domain
CCX85_RS08645	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CCX85_RS08645	SM00866	CCX85_RS08645
CCX85_RS08700	SM00732	Likely ribonuclease with RNase H fold.
CCX85_RS08715	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08720	SM00852	Probable molybdopterin binding domain
CCX85_RS08730	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CCX85_RS08740	SM00853	MutL C terminal dimerisation domain
CCX85_RS08740	SM01340	CCX85_RS08740
CCX85_RS08745	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CCX85_RS08745	SM00534	ATPase domain of DNA mismatch repair MUTS family
CCX85_RS08760	SM00836	DALR anticodon binding domain
CCX85_RS08760	SM01016	Arginyl tRNA synthetase N terminal dom
CCX85_RS08815	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CCX85_RS08875	SM00363	S4 RNA-binding domain
CCX85_RS08875	SM01390	CCX85_RS08875
CCX85_RS08900	SM01228	CCX85_RS08900
CCX85_RS08935	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08940	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS08970	SM00984	UDP binding domain
CCX85_RS09000	SM00116	Domain in cystathionine beta-synthase and other proteins.
CCX85_RS09000	SM01240	CCX85_RS09000
CCX85_RS09015	SM00382	ATPases associated with a variety of cellular activities
CCX85_RS09050	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CCX85_RS09055	SM00470	ParB-like nuclease domain
