locus-tag	class	description
JYQ80_RS00010	COG0592	DNA-directed DNA polymerase activity
JYQ80_RS00020	COG0012	GTP binding
JYQ80_RS00030	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JYQ80_RS00035	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JYQ80_RS00060	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JYQ80_RS00065	COG0531	amino acid
JYQ80_RS00180	COG3942	CHAP domain
JYQ80_RS00200	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JYQ80_RS00210	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JYQ80_RS00225	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JYQ80_RS00245	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JYQ80_RS00260	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JYQ80_RS00280	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JYQ80_RS00295	COG1012	belongs to the aldehyde dehydrogenase family
JYQ80_RS00295	COG1454	alcohol dehydrogenase
JYQ80_RS00300	COG1064	alcohol dehydrogenase
JYQ80_RS00305	COG0534	Mate efflux family protein
JYQ80_RS00415	COG0201	protein transport
JYQ80_RS00545	COG1121	(ABC) transporter
JYQ80_RS00550	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JYQ80_RS00565	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JYQ80_RS00585	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JYQ80_RS00590	COG1459	type II secretion system
JYQ80_RS00595	COG4537	Required for transformation and DNA binding
JYQ80_RS00635	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JYQ80_RS00640	COG1363	Peptidase, m42
JYQ80_RS00650	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JYQ80_RS00655	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JYQ80_RS00665	COG1428	Deoxynucleoside kinase
JYQ80_RS00670	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JYQ80_RS00700	COG4509	Sortase family
JYQ80_RS00710	COG4372	Transposase
JYQ80_RS00735	COG2031	fatty acid transporter
JYQ80_RS00750	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JYQ80_RS00765	COG0251	oxidation-reduction process
JYQ80_RS00780	COG1269	ATP hydrolysis coupled proton transport
JYQ80_RS00785	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JYQ80_RS00795	COG1527	subunit (C
JYQ80_RS00800	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
JYQ80_RS00835	COG1744	ABC transporter substrate-binding protein PnrA-like
JYQ80_RS00875	COG0626	cystathionine gamma-synthase activity
JYQ80_RS00905	COG3623	hexulose-6-phosphate isomerase
JYQ80_RS00925	COG3448	diguanylate cyclase activity
JYQ80_RS00925	COG4175	Glycine betaine
JYQ80_RS00935	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JYQ80_RS00935	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JYQ80_RS00955	COG3969	phosphoadenosine phosphosulfate
JYQ80_RS00960	COG1475	DNA binding
JYQ80_RS00980	COG0157	Belongs to the NadC ModD family
JYQ80_RS01005	COG1268	BioY protein
JYQ80_RS01010	COG1234	tRNA 3'-trailer cleavage
JYQ80_RS01045	COG5433	transposase activity
JYQ80_RS01050	COG0803	Belongs to the bacterial solute-binding protein 9 family
JYQ80_RS01070	COG1122	ATPase activity
JYQ80_RS01080	COG0601	transmembrane transport
JYQ80_RS01120	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JYQ80_RS01125	COG0512	Glutamine amidotransferase of anthranilate synthase
JYQ80_RS01130	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JYQ80_RS01145	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JYQ80_RS01150	COG2190	(PTS) system
JYQ80_RS01150	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYQ80_RS01150	COG1263	PTS System
JYQ80_RS01190	COG3842	ATPase activity
JYQ80_RS01200	COG1523	belongs to the glycosyl hydrolase 13 family
JYQ80_RS01210	COG1862	Preprotein translocase
JYQ80_RS01220	COG4589	Belongs to the CDS family
JYQ80_RS01240	COG1846	Transcriptional regulator
JYQ80_RS01270	COG3711	transcriptional antiterminator
JYQ80_RS01285	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JYQ80_RS01300	COG1045	serine acetyltransferase
JYQ80_RS01315	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
JYQ80_RS01325	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JYQ80_RS01345	COG1476	TRANSCRIPTIONal
JYQ80_RS01350	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JYQ80_RS01360	COG4974	Belongs to the 'phage' integrase family
JYQ80_RS01405	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYQ80_RS01410	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYQ80_RS01410	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYQ80_RS01430	COG2274	protein secretion by the type I secretion system
JYQ80_RS01435	COG1136	(ABC) transporter
JYQ80_RS01440	COG0577	efflux transmembrane transporter activity
JYQ80_RS01465	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
JYQ80_RS01470	COG1929	Belongs to the glycerate kinase type-1 family
JYQ80_RS01510	COG5433	transposase activity
JYQ80_RS01515	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JYQ80_RS01520	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JYQ80_RS01525	COG1534	Rna-binding protein
JYQ80_RS01535	COG1713	HD superfamily hydrolase involved in NAD metabolism
JYQ80_RS01540	COG0799	negative regulation of ribosome biogenesis
JYQ80_RS01545	COG2226	methyltransferase
JYQ80_RS01560	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYQ80_RS01565	COG1464	Belongs to the NlpA lipoprotein family
JYQ80_RS01580	COG1114	Component of the transport system for branched-chain amino acids
JYQ80_RS01590	COG0569	domain protein
JYQ80_RS01595	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JYQ80_RS01605	COG1704	LemA family
JYQ80_RS01620	COG0745	RESPONSE REGULATOR receiver
JYQ80_RS01640	COG1484	DNA-dependent DNA replication
JYQ80_RS01650	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JYQ80_RS01670	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JYQ80_RS01685	COG1254	Belongs to the acylphosphatase family
JYQ80_RS01690	COG5433	transposase activity
JYQ80_RS01695	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JYQ80_RS01750	COG1187	pseudouridine synthase activity
JYQ80_RS01765	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JYQ80_RS01770	COG0671	phosphoesterase, PA-phosphatase related
JYQ80_RS01775	COG1242	4 iron, 4 sulfur cluster binding
JYQ80_RS01780	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JYQ80_RS01785	COG1253	flavin adenine dinucleotide binding
JYQ80_RS01790	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JYQ80_RS01805	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYQ80_RS01810	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JYQ80_RS01815	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JYQ80_RS01820	COG1120	ATPase activity
JYQ80_RS01830	COG2244	polysaccharide biosynthetic process
JYQ80_RS01855	COG0470	DNA polymerase III
JYQ80_RS01885	COG1393	Belongs to the ArsC family
JYQ80_RS01890	COG0708	Exodeoxyribonuclease III
JYQ80_RS01895	COG1304	FMN binding
JYQ80_RS01970	COG1028	Short-chain dehydrogenase reductase Sdr
JYQ80_RS01975	COG0673	inositol 2-dehydrogenase activity
JYQ80_RS01990	COG0494	nUDIX hydrolase
JYQ80_RS02000	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JYQ80_RS02090	COG1702	phosphate starvation-inducible protein PhoH
JYQ80_RS02095	COG1573	uracil-dna glycosylase
JYQ80_RS02105	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JYQ80_RS02185	COG0433	COG0433 Predicted ATPase
JYQ80_RS02190	COG2814	Major facilitator Superfamily
JYQ80_RS02205	COG0557	exoribonuclease II activity
JYQ80_RS02235	COG0463	Glycosyl transferase, family 2
JYQ80_RS02245	COG0778	Nitroreductase
JYQ80_RS02250	COG0006	proline dipeptidase activity
JYQ80_RS02255	COG1609	Transcriptional regulator
JYQ80_RS02265	COG0438	transferase activity, transferring glycosyl groups
JYQ80_RS02275	COG4555	ABC transporter
JYQ80_RS02295	COG0183	Belongs to the thiolase family
JYQ80_RS02310	COG0745	RESPONSE REGULATOR receiver
JYQ80_RS02315	COG5002	protein histidine kinase activity
JYQ80_RS02320	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JYQ80_RS02330	COG1196	nuclear chromosome segregation
JYQ80_RS02345	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JYQ80_RS02435	COG4695	Portal protein
JYQ80_RS02485	COG0561	phosphatase activity
JYQ80_RS02490	COG0561	phosphatase activity
JYQ80_RS02495	COG0552	protein localization to endoplasmic reticulum
JYQ80_RS02500	COG0477	Major facilitator Superfamily
JYQ80_RS02505	COG3711	transcriptional antiterminator
JYQ80_RS02510	COG1263	PTS System
JYQ80_RS02510	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYQ80_RS02510	COG2190	(PTS) system
JYQ80_RS02520	COG3689	TIGRFAM TIGR03943 family protein
JYQ80_RS02525	COG0701	Predicted permease
JYQ80_RS02535	COG2183	response to ionizing radiation
JYQ80_RS02580	COG0826	peptidase U32
JYQ80_RS02585	COG4443	Transcriptional Coactivator p15 (PC4)
JYQ80_RS02635	COG0386	Belongs to the glutathione peroxidase family
JYQ80_RS02640	COG1164	Oligoendopeptidase f
JYQ80_RS02650	COG0772	Belongs to the SEDS family
JYQ80_RS02680	COG1078	dGTPase activity
JYQ80_RS02695	COG1609	Transcriptional regulator
JYQ80_RS02705	COG3716	PTS system mannose fructose sorbose family IID component
JYQ80_RS02710	COG3715	PTS system
JYQ80_RS02715	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYQ80_RS02730	COG1028	Short-chain dehydrogenase reductase Sdr
JYQ80_RS02745	COG0800	Aldolase
JYQ80_RS02750	COG0546	phosphoglycolate phosphatase activity
JYQ80_RS02755	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JYQ80_RS02765	COG2884	Cell division ATP-binding protein ftsE
JYQ80_RS02770	COG2177	Part of the ABC transporter FtsEX involved in
JYQ80_RS02785	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JYQ80_RS02785	COG1199	ATP-dependent helicase activity
JYQ80_RS02790	COG0436	Aminotransferase
JYQ80_RS02825	COG2188	Transcriptional regulator
JYQ80_RS02830	COG2222	sugar isomerase
JYQ80_RS02840	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JYQ80_RS02845	COG0716	FMN binding
JYQ80_RS02855	COG0038	chloride channel
JYQ80_RS02950	COG1131	(ABC) transporter
JYQ80_RS02970	COG4708	membrane
JYQ80_RS02980	COG1597	lipid kinase activity
JYQ80_RS03065	COG0577	efflux transmembrane transporter activity
JYQ80_RS03075	COG2321	neutral zinc metallopeptidase
JYQ80_RS03090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYQ80_RS03100	COG1970	mechanosensitive ion channel activity
JYQ80_RS03105	COG0358	DNA primase activity
JYQ80_RS03110	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JYQ80_RS03115	COG2151	metal-sulfur cluster biosynthetic enzyme
JYQ80_RS03160	COG1216	Glycosyl transferase, family 2
JYQ80_RS03220	COG1368	sulfuric ester hydrolase activity
JYQ80_RS03225	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JYQ80_RS03245	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JYQ80_RS03250	COG0285	dihydrofolate synthase activity
JYQ80_RS03260	COG1104	cysteine desulfurase activity
JYQ80_RS03285	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JYQ80_RS03290	COG0583	DNA-binding transcription factor activity
JYQ80_RS03300	COG0564	pseudouridine synthase activity
JYQ80_RS03330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JYQ80_RS03335	COG1136	(ABC) transporter
JYQ80_RS03340	COG0577	efflux transmembrane transporter activity
JYQ80_RS03345	COG0584	glycerophosphoryl diester phosphodiesterase
JYQ80_RS03355	COG1837	Belongs to the UPF0109 family
JYQ80_RS03405	COG1349	DNA-binding transcription factor activity
JYQ80_RS03410	COG1105	Belongs to the carbohydrate kinase PfkB family
JYQ80_RS03415	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYQ80_RS03415	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JYQ80_RS03415	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JYQ80_RS03420	COG1388	LysM domain
JYQ80_RS03420	COG1705	Flagellar rod assembly protein muramidase FlgJ
JYQ80_RS03425	COG1388	LysM domain
JYQ80_RS03425	COG1705	Flagellar rod assembly protein muramidase FlgJ
JYQ80_RS03465	COG0488	(ABC) transporter
JYQ80_RS03470	COG0242	peptide deformylase activity
JYQ80_RS03475	COG0737	Belongs to the 5'-nucleotidase family
JYQ80_RS03480	COG2357	RelA SpoT domain protein
JYQ80_RS03485	COG0745	RESPONSE REGULATOR receiver
JYQ80_RS03520	COG3425	synthase
JYQ80_RS03530	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JYQ80_RS03590	COG0583	DNA-binding transcription factor activity
JYQ80_RS03615	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYQ80_RS03620	COG0765	amino acid transport
JYQ80_RS03640	COG0187	DNA topoisomerase II activity
JYQ80_RS03650	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JYQ80_RS03670	COG0539	negative regulation of cytoplasmic translation
JYQ80_RS03710	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JYQ80_RS03715	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
JYQ80_RS03725	COG0300	oxidoreductase activity
JYQ80_RS03730	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JYQ80_RS03730	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JYQ80_RS03745	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JYQ80_RS03750	COG2384	SAM-dependent methyltransferase
JYQ80_RS03760	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JYQ80_RS03765	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JYQ80_RS03775	COG1088	dTDP-glucose 4,6-dehydratase activity
JYQ80_RS03780	COG1051	belongs to the nudix hydrolase family
JYQ80_RS03785	COG0628	permease
JYQ80_RS03790	COG0457	Tetratricopeptide repeat
JYQ80_RS03795	COG1293	RNA-binding protein homologous to eukaryotic snRNP
JYQ80_RS03810	COG1129	ABC transporter
JYQ80_RS03830	COG0488	(ABC) transporter
JYQ80_RS03835	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JYQ80_RS03840	COG0022	dehydrogenase e1 component
JYQ80_RS03840	COG0508	dehydrogenase complex catalyzes the overall conversion of
JYQ80_RS03860	COG5492	domain, Protein
JYQ80_RS03865	COG0095	Lipoate-protein ligase
JYQ80_RS03870	COG3442	glutamine amidotransferase
JYQ80_RS03875	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JYQ80_RS03880	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JYQ80_RS03900	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JYQ80_RS03910	COG0647	UMP catabolic process
JYQ80_RS03925	COG1518	maintenance of DNA repeat elements
JYQ80_RS03930	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
JYQ80_RS03975	COG3715	PTS system
JYQ80_RS03980	COG3716	PTS system mannose fructose sorbose family IID component
JYQ80_RS03985	COG2972	Histidine kinase
JYQ80_RS03990	COG4753	response regulator
JYQ80_RS03990	COG2207	Transcriptional regulator
JYQ80_RS03995	COG1840	ABC-type Fe3 transport system, periplasmic component
JYQ80_RS04010	COG1011	Hydrolase
JYQ80_RS04015	COG1012	belongs to the aldehyde dehydrogenase family
JYQ80_RS04030	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JYQ80_RS04095	COG1131	(ABC) transporter
JYQ80_RS04110	COG1396	sequence-specific DNA binding
JYQ80_RS04140	COG0285	dihydrofolate synthase activity
JYQ80_RS04160	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JYQ80_RS04175	COG1176	ABC-type spermidine putrescine transport system, permease component I
JYQ80_RS04180	COG1177	transmembrane transport
JYQ80_RS04190	COG4565	transcriptional regulatory protein
JYQ80_RS04195	COG3290	protein histidine kinase activity
JYQ80_RS04200	COG3493	citrate carrier protein
JYQ80_RS04215	COG3700	Belongs to the class B bacterial acid phosphatase family
JYQ80_RS04220	COG0038	chloride channel
JYQ80_RS04230	COG0628	permease
JYQ80_RS04240	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JYQ80_RS04255	COG1104	cysteine desulfurase activity
JYQ80_RS04270	COG2357	RelA SpoT domain protein
JYQ80_RS04280	COG0564	pseudouridine synthase activity
JYQ80_RS04285	COG0280	phosphate acetyltransferase
JYQ80_RS04305	COG1174	glycine betaine transport
JYQ80_RS04320	COG2233	PERMEase
JYQ80_RS04345	COG2890	protein-(glutamine-N5) methyltransferase activity
JYQ80_RS04375	COG1132	(ABC) transporter
JYQ80_RS04380	COG1132	(ABC) transporter
JYQ80_RS04400	COG3764	Sortase (surface protein transpeptidase)
JYQ80_RS04405	COG0346	lactoylglutathione lyase activity
JYQ80_RS04420	COG1272	protein, Hemolysin III
JYQ80_RS04440	COG0758	DNA mediated transformation
JYQ80_RS04445	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JYQ80_RS04490	COG0511	ligase activity, forming carbon-carbon bonds
JYQ80_RS04495	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
JYQ80_RS04510	COG2851	Citrate transporter
JYQ80_RS04520	COG0511	ligase activity, forming carbon-carbon bonds
JYQ80_RS04525	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
JYQ80_RS04555	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
JYQ80_RS04575	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JYQ80_RS04585	COG2188	Transcriptional regulator
JYQ80_RS04605	COG0488	(ABC) transporter
JYQ80_RS04615	COG0351	phosphomethylpyrimidine kinase
JYQ80_RS04615	COG0352	thiamine-phosphate diphosphorylase activity
JYQ80_RS04620	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JYQ80_RS04625	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JYQ80_RS04625	COG1328	CTP reductase activity
JYQ80_RS04630	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JYQ80_RS04660	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JYQ80_RS04680	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JYQ80_RS04685	COG4684	Psort location CytoplasmicMembrane, score
JYQ80_RS04690	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JYQ80_RS04695	COG1079	Belongs to the binding-protein-dependent transport system permease family
JYQ80_RS04700	COG4603	Belongs to the binding-protein-dependent transport system permease family
JYQ80_RS04705	COG3845	ABC transporter
JYQ80_RS04710	COG1744	ABC transporter substrate-binding protein PnrA-like
JYQ80_RS04715	COG0295	cytidine deaminase activity
JYQ80_RS04720	COG2813	Specifically methylates the guanine in position
JYQ80_RS04735	COG5002	protein histidine kinase activity
JYQ80_RS04740	COG0745	RESPONSE REGULATOR receiver
JYQ80_RS04750	COG0704	Plays a role in the regulation of phosphate uptake
JYQ80_RS04765	COG0581	inorganic phosphate transmembrane transporter activity
JYQ80_RS04770	COG0573	inorganic phosphate transmembrane transporter activity
JYQ80_RS04780	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
JYQ80_RS04780	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JYQ80_RS04785	COG0483	inositol monophosphate 1-phosphatase activity
JYQ80_RS04800	COG0196	riboflavin kinase activity
JYQ80_RS04830	COG1136	(ABC) transporter
JYQ80_RS04830	COG4591	ABC-type transport system involved in lipoprotein release permease component
JYQ80_RS04880	COG1115	amino acid carrier protein
JYQ80_RS04885	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JYQ80_RS04895	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYQ80_RS04900	COG1126	abc transporter atp-binding protein
JYQ80_RS04905	COG0765	amino acid transport
JYQ80_RS04910	COG2824	Alkylphosphonate utilization operon protein PhnA
JYQ80_RS04925	COG0469	pyruvate kinase activity
JYQ80_RS04940	COG1725	Transcriptional regulator
JYQ80_RS04945	COG1131	(ABC) transporter
JYQ80_RS05100	COG1783	phage Terminase large subunit
JYQ80_RS05205	COG1396	sequence-specific DNA binding
JYQ80_RS05250	COG0058	SHG alpha-glucan phosphorylase activity
JYQ80_RS05255	COG1640	4-alpha-glucanotransferase
JYQ80_RS05260	COG1609	Transcriptional regulator
JYQ80_RS05265	COG2182	Extracellular solute-binding protein
JYQ80_RS05270	COG1175	transmembrane transport
JYQ80_RS05275	COG3833	ABC-type maltose transport systems, permease component
JYQ80_RS05290	COG3833	ABC-type maltose transport systems, permease component
JYQ80_RS05295	COG1175	transmembrane transport
JYQ80_RS05305	COG0366	Alpha amylase catalytic
JYQ80_RS05310	COG2182	Extracellular solute-binding protein
JYQ80_RS05315	COG0657	acetylesterase activity
JYQ80_RS05320	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JYQ80_RS05330	COG1696	Membrane protein involved in D-alanine export
JYQ80_RS05350	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JYQ80_RS05355	COG1126	abc transporter atp-binding protein
JYQ80_RS05365	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYQ80_RS05375	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYQ80_RS05385	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JYQ80_RS05385	COG3711	transcriptional antiterminator
JYQ80_RS05395	COG2723	6-phospho-beta-galactosidase activity
JYQ80_RS05425	COG1187	pseudouridine synthase activity
JYQ80_RS05435	COG2814	Major facilitator Superfamily
JYQ80_RS05485	COG4109	DRTGG domain
JYQ80_RS05490	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JYQ80_RS05515	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JYQ80_RS05515	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JYQ80_RS05525	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JYQ80_RS05530	COG1956	GAF domain-containing protein
JYQ80_RS05550	COG0513	Belongs to the DEAD box helicase family
JYQ80_RS05555	COG0726	polysaccharide deacetylase
JYQ80_RS05575	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JYQ80_RS05580	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JYQ80_RS05585	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JYQ80_RS05610	COG1476	TRANSCRIPTIONal
JYQ80_RS05625	COG4122	O-methyltransferase activity
JYQ80_RS05630	COG2223	nitrite transmembrane transporter activity
JYQ80_RS05645	COG1187	pseudouridine synthase activity
JYQ80_RS05690	COG2333	competence protein COMEC
JYQ80_RS05690	COG0658	competence protein
JYQ80_RS05695	COG1596	polysaccharide export
JYQ80_RS05695	COG1555	photosystem II stabilization
JYQ80_RS05700	COG0204	Acyl-transferase
JYQ80_RS05705	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JYQ80_RS05720	COG0513	Belongs to the DEAD box helicase family
JYQ80_RS05735	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JYQ80_RS05750	COG2116	formate transmembrane transporter activity
JYQ80_RS05760	COG1827	regulation of RNA biosynthetic process
JYQ80_RS05775	COG2217	Heavy metal translocating P-type atpase
JYQ80_RS05960	COG3723	Recombinational DNA repair protein, rece pathway
JYQ80_RS05985	COG3935	DnaD domain protein
JYQ80_RS06020	COG3561	AntA/AntB antirepressor
JYQ80_RS06035	COG1396	sequence-specific DNA binding
JYQ80_RS06050	COG0582	viral genome integration into host DNA
JYQ80_RS06065	COG2755	lipolytic protein G-D-S-L family
JYQ80_RS06080	COG0497	DNA recombination
JYQ80_RS06085	COG1438	arginine binding
JYQ80_RS06090	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JYQ80_RS06115	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JYQ80_RS06120	COG0415	Belongs to the DNA photolyase family
JYQ80_RS06130	COG0765	amino acid transport
JYQ80_RS06135	COG4703	Protein of unknown function (DUF1797)
JYQ80_RS06140	COG0542	response to heat
JYQ80_RS06145	COG0494	nUDIX hydrolase
JYQ80_RS06160	COG3599	regulation of cell shape
JYQ80_RS06165	COG2302	S4 RNA-binding domain
JYQ80_RS06180	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JYQ80_RS06215	COG1217	gtp-binding protein TYPA
JYQ80_RS06220	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JYQ80_RS06225	COG1940	carbohydrate kinase activity
JYQ80_RS06235	COG0783	Belongs to the Dps family
JYQ80_RS06250	COG4470	Protein conserved in bacteria
JYQ80_RS06265	COG3480	Lon protease (S16) C-terminal proteolytic domain
JYQ80_RS06275	COG0742	ribosomal rna small subunit methyltransferase
JYQ80_RS06285	COG0549	Belongs to the carbamate kinase family
JYQ80_RS06290	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JYQ80_RS06295	COG1288	antiporter activity
JYQ80_RS06310	COG2235	arginine
JYQ80_RS06335	COG2972	Histidine kinase
JYQ80_RS06350	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JYQ80_RS06355	COG0785	Cytochrome C biogenesis protein
JYQ80_RS06360	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
JYQ80_RS06365	COG1518	maintenance of DNA repeat elements
JYQ80_RS06425	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JYQ80_RS06425	COG1605	Chorismate mutase
JYQ80_RS06445	COG2226	methyltransferase
JYQ80_RS06455	COG3250	beta-galactosidase activity
JYQ80_RS06460	COG4753	response regulator
JYQ80_RS06460	COG2207	Transcriptional regulator
JYQ80_RS06465	COG2972	Histidine kinase
JYQ80_RS06475	COG1653	transport
JYQ80_RS06480	COG0395	ABC-type sugar transport system, permease component
JYQ80_RS06485	COG1175	transmembrane transport
JYQ80_RS06490	COG1940	carbohydrate kinase activity
JYQ80_RS06495	COG2723	6-phospho-beta-galactosidase activity
JYQ80_RS06500	COG3525	Glycosyl hydrolase, family 20, catalytic domain
JYQ80_RS06515	COG0383	alpha-mannosidase activity
JYQ80_RS06610	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JYQ80_RS06615	COG1739	Uncharacterized protein family UPF0029
JYQ80_RS06625	COG1098	S1 RNA binding domain
JYQ80_RS06635	COG2197	response regulator
JYQ80_RS06640	COG4585	Histidine kinase
JYQ80_RS06650	COG0515	serine threonine protein kinase
JYQ80_RS06650	COG2815	serine threonine protein kinase
JYQ80_RS06660	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JYQ80_RS06660	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JYQ80_RS06670	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JYQ80_RS06690	COG0583	DNA-binding transcription factor activity
JYQ80_RS06695	COG0183	Belongs to the thiolase family
JYQ80_RS06700	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JYQ80_RS06710	COG1028	Short-chain dehydrogenase reductase Sdr
JYQ80_RS06715	COG2610	gluconate transmembrane transporter activity
JYQ80_RS06730	COG0116	Belongs to the methyltransferase superfamily
JYQ80_RS06755	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JYQ80_RS06760	COG3579	cysteine-type endopeptidase activity
JYQ80_RS06770	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JYQ80_RS06775	COG1113	amino acid transport
JYQ80_RS06780	COG0492	ferredoxin-NADP+ reductase activity
JYQ80_RS06790	COG1126	abc transporter atp-binding protein
JYQ80_RS06800	COG0513	Belongs to the DEAD box helicase family
JYQ80_RS06810	COG0768	penicillin binding
JYQ80_RS06845	COG1131	(ABC) transporter
JYQ80_RS06870	COG0446	pyridine nucleotide-disulphide oxidoreductase
JYQ80_RS06875	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JYQ80_RS06910	COG1755	Isoprenylcysteine carboxyl methyltransferase
JYQ80_RS06915	COG0656	L-ascorbic acid biosynthetic process
JYQ80_RS06925	COG1283	sodium-dependent phosphate transmembrane transporter activity
JYQ80_RS06945	COG0561	phosphatase activity
JYQ80_RS06950	COG2860	membrane
JYQ80_RS07000	COG2217	Heavy metal translocating P-type atpase
JYQ80_RS07030	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JYQ80_RS07035	COG0195	Participates in both transcription termination and antitermination
JYQ80_RS07055	COG1705	Flagellar rod assembly protein muramidase FlgJ
JYQ80_RS07305	COG4974	Belongs to the 'phage' integrase family
JYQ80_RS07325	COG4473	ABC transporter
JYQ80_RS07330	COG1131	(ABC) transporter
JYQ80_RS07335	COG0537	adenosine 5'-monophosphoramidase activity
JYQ80_RS07345	COG1316	TRANSCRIPTIONal
JYQ80_RS07355	COG0802	atpase or kinase
JYQ80_RS07360	COG2252	PERMEase
JYQ80_RS07365	COG0561	phosphatase activity
JYQ80_RS07375	COG3715	PTS system
JYQ80_RS07380	COG3716	PTS system mannose fructose sorbose family IID component
JYQ80_RS07405	COG0439	Biotin carboxylase
JYQ80_RS07420	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JYQ80_RS07425	COG1028	Short-chain dehydrogenase reductase Sdr
JYQ80_RS07430	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JYQ80_RS07455	COG1024	Enoyl-CoA hydratase
JYQ80_RS07490	COG0588	phosphoglycerate mutase activity
JYQ80_RS07495	COG2261	transglycosylase associated protein
JYQ80_RS07520	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JYQ80_RS07520	COG0574	Belongs to the PEP-utilizing enzyme family
JYQ80_RS07525	COG1335	isochorismatase
JYQ80_RS07535	COG0436	Aminotransferase
JYQ80_RS07545	COG0561	phosphatase activity
JYQ80_RS07550	COG0252	asparaginase activity
JYQ80_RS07565	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JYQ80_RS07570	COG1129	ABC transporter
JYQ80_RS07585	COG1132	(ABC) transporter
JYQ80_RS07590	COG4988	ABC transporter
JYQ80_RS07595	COG1120	ATPase activity
JYQ80_RS07620	COG3942	CHAP domain
JYQ80_RS07620	COG1388	LysM domain
JYQ80_RS07640	COG5433	transposase activity
JYQ80_RS07645	COG5433	transposase activity
JYQ80_RS07650	COG1482	cell wall glycoprotein biosynthetic process
JYQ80_RS07655	COG1940	carbohydrate kinase activity
JYQ80_RS07665	COG1263	PTS System
JYQ80_RS07665	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYQ80_RS07665	COG2190	(PTS) system
JYQ80_RS07670	COG1621	beta-fructofuranosidase activity
JYQ80_RS07675	COG1609	Transcriptional regulator
JYQ80_RS07695	COG2131	deaminase
JYQ80_RS07700	COG0006	proline dipeptidase activity
JYQ80_RS07740	COG1194	a g-specific adenine glycosylase
JYQ80_RS07750	COG3118	belongs to the thioredoxin family
JYQ80_RS07780	COG0681	Belongs to the peptidase S26 family
JYQ80_RS07785	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JYQ80_RS07800	COG1882	Formate acetyltransferase
JYQ80_RS07805	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JYQ80_RS07820	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JYQ80_RS07825	COG2814	Major facilitator Superfamily
JYQ80_RS07830	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JYQ80_RS07855	COG0789	Transcriptional regulator
JYQ80_RS07870	COG2081	HI0933 family
JYQ80_RS07880	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JYQ80_RS07885	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
JYQ80_RS07905	COG0456	acetyltransferase
JYQ80_RS07910	COG1214	PFAM Peptidase M22, glycoprotease
JYQ80_RS07925	COG0174	glutamine synthetase
JYQ80_RS07930	COG0789	Transcriptional regulator
JYQ80_RS07945	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
JYQ80_RS07965	COG5433	transposase activity
JYQ80_RS08005	COG0668	transmembrane transport
JYQ80_RS08015	COG4720	Psort location CytoplasmicMembrane, score
JYQ80_RS08020	COG0351	phosphomethylpyrimidine kinase
JYQ80_RS08065	COG2801	Transposase and inactivated derivatives
JYQ80_RS08075	COG0444	Belongs to the ABC transporter superfamily
JYQ80_RS08080	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JYQ80_RS08085	COG0601	transmembrane transport
JYQ80_RS08090	COG4166	transmembrane transport
JYQ80_RS08095	COG1686	Belongs to the peptidase S11 family
JYQ80_RS08100	COG1686	Belongs to the peptidase S11 family
JYQ80_RS08115	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JYQ80_RS08120	COG0719	Fe-S assembly protein
JYQ80_RS08130	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JYQ80_RS08150	COG0765	amino acid transport
JYQ80_RS08190	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JYQ80_RS08205	COG1564	THIamine pyrophosphokinase
JYQ80_RS08230	COG0084	hydrolase, TatD family'
JYQ80_RS08245	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JYQ80_RS08255	COG0395	ABC-type sugar transport system, permease component
JYQ80_RS08260	COG1175	transmembrane transport
JYQ80_RS08280	COG1847	R3H domain protein
JYQ80_RS08305	COG3290	protein histidine kinase activity
JYQ80_RS08330	COG0756	dUTP diphosphatase activity
JYQ80_RS08340	COG1132	(ABC) transporter
JYQ80_RS08345	COG1132	(ABC) transporter
JYQ80_RS08365	COG0457	Tetratricopeptide repeat
JYQ80_RS08365	COG0705	Rhomboid family
JYQ80_RS08370	COG5433	transposase activity
JYQ80_RS08400	COG3711	transcriptional antiterminator
JYQ80_RS08410	COG1705	Flagellar rod assembly protein muramidase FlgJ
JYQ80_RS08410	COG3942	CHAP domain
JYQ80_RS08415	COG2205	protein histidine kinase activity
JYQ80_RS08420	COG0745	RESPONSE REGULATOR receiver
JYQ80_RS08425	COG0577	efflux transmembrane transporter activity
JYQ80_RS08430	COG1136	(ABC) transporter
JYQ80_RS08480	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JYQ80_RS08495	COG1882	Formate acetyltransferase
JYQ80_RS08500	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYQ80_RS08505	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JYQ80_RS08510	COG1447	Phosphotransferase system cellobiose-specific component IIA
JYQ80_RS08515	COG2390	Transcriptional regulator
JYQ80_RS08520	COG1349	DNA-binding transcription factor activity
JYQ80_RS08525	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JYQ80_RS08540	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JYQ80_RS08550	COG0564	pseudouridine synthase activity
JYQ80_RS08580	COG0542	response to heat
JYQ80_RS08585	COG4463	regulation of RNA biosynthetic process
JYQ80_RS08600	COG0450	alkyl hydroperoxide reductase
JYQ80_RS08615	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JYQ80_RS08625	COG3404	Formiminotransferase-cyclodeaminase
JYQ80_RS08640	COG0531	amino acid
JYQ80_RS08670	COG3590	peptidase
JYQ80_RS08675	COG0366	Alpha amylase catalytic
JYQ80_RS08680	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JYQ80_RS08680	COG1263	PTS System
JYQ80_RS08685	COG2188	Transcriptional regulator
JYQ80_RS08690	COG1733	regulation of RNA biosynthetic process
JYQ80_RS08695	COG2514	catechol 2,3-dioxygenase activity
JYQ80_RS08705	COG0602	queuosine metabolic process
JYQ80_RS08725	COG1328	CTP reductase activity
JYQ80_RS08750	COG1393	Belongs to the ArsC family
JYQ80_RS08765	COG0519	Catalyzes the synthesis of GMP from XMP
JYQ80_RS08775	COG2814	Major facilitator Superfamily
JYQ80_RS08810	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JYQ80_RS08815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JYQ80_RS08820	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JYQ80_RS08905	COG1511	domain protein
JYQ80_RS08920	COG5433	transposase activity
JYQ80_RS08930	COG0305	Participates in initiation and elongation during chromosome replication
JYQ80_RS08960	COG1760	l-serine dehydratase
JYQ80_RS08965	COG1760	l-serine dehydratase
JYQ80_RS08970	COG0741	lytic transglycosylase activity
JYQ80_RS08975	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JYQ80_RS08990	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JYQ80_RS09000	COG0612	Peptidase, M16
JYQ80_RS09010	COG1215	transferase activity, transferring glycosyl groups
JYQ80_RS09040	COG0516	GMP reductase activity
JYQ80_RS09040	COG0517	IMP dehydrogenase activity
JYQ80_RS09050	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JYQ80_RS09055	COG0488	(ABC) transporter
JYQ80_RS09090	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JYQ80_RS09095	COG1475	DNA binding