SPy_0002 PF00308 Bacterial dnaA protein SPy_0002 PF08299 Bacterial dnaA protein helix-turn-helix SPy_0003 PF00712 DNA polymerase III beta subunit, N-terminal domain SPy_0003 PF02767 DNA polymerase III beta subunit, central domain SPy_0003 PF02768 DNA polymerase III beta subunit, C-terminal domain SPy_0004 PF06107 SPy_0004 SPy_0006 PF01926 50S ribosome-binding GTPase SPy_0006 PF06071 Protein of unknown function (DUF933) SPy_0007 PF01195 Peptidyl-tRNA hydrolase SPy_0008 PF00270 DEAD/DEAH box helicase SPy_0008 PF00271 Helicase conserved C-terminal domain SPy_0008 PF02559 CarD-like/TRCF domain SPy_0008 PF03461 TRCF domain SPy_0009 PF01479 S4 domain SPy_0010 PF04977 Septum formation initiator SPy_0012 PF13354 Beta-lactamase enzyme family SPy_0013 PF01171 PP-loop family SPy_0015 PF00004 ATPase family associated with various cellular activities (AAA) SPy_0015 PF01434 Peptidase family M41 SPy_0015 PF06480 FtsH Extracellular SPy_0016 PF13520 Amino acid permease SPy_0019 PF05257 CHAP domain SPy_0020 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPy_0020 PF14572 Phosphoribosyl synthetase-associated domain SPy_0021 PF02565 Recombination protein O C terminal SPy_0021 PF11967 Recombination protein O N terminal SPy_0022 PF02504 Fatty acid synthesis protein SPy_0023 PF00550 Phosphopantetheine attachment site SPy_0024 PF01259 SAICAR synthetase SPy_0025 PF02769 AIR synthase related protein, C-terminal domain SPy_0025 PF13507 CobB/CobQ-like glutamine amidotransferase domain SPy_0026 PF00156 Phosphoribosyl transferase domain SPy_0026 PF13537 Glutamine amidotransferase domain SPy_0027 PF00586 AIR synthase related protein, N-terminal domain SPy_0027 PF02769 AIR synthase related protein, C-terminal domain SPy_0028 PF00551 Formyl transferase SPy_0031 PF05257 CHAP domain SPy_0031 PF08460 Bacterial SH3 domain SPy_0032 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SPy_0032 PF02843 Phosphoribosylglycinamide synthetase, C domain SPy_0032 PF02844 Phosphoribosylglycinamide synthetase, N domain SPy_0033 PF00731 AIR carboxylase SPy_0034 PF02222 ATP-grasp domain SPy_0035 PF10592 SPy_0035 SPy_0036 PF00206 Lyase SPy_0036 PF10397 Adenylosuccinate lyase C-terminus SPy_0037 PF01381 Helix-turn-helix SPy_0038 PF05491 Holliday junction DNA helicase ruvB C-terminus SPy_0038 PF05496 Holliday junction DNA helicase ruvB N-terminus SPy_0039 PF01451 Low molecular weight phosphotyrosine protein phosphatase SPy_0040 PF02493 MORN repeat SPy_0041 PF01757 SPy_0041 SPy_0044 PF00107 Zinc-binding dehydrogenase SPy_0044 PF08240 Alcohol dehydrogenase GroES-like domain SPy_0045 PF01554 MatE SPy_0047 PF00338 Ribosomal protein S10p/S20e SPy_0049 PF00297 Ribosomal protein L3 SPy_0050 PF00573 Ribosomal protein L4/L1 family SPy_0051 PF00276 Ribosomal protein L23 SPy_0052 PF00181 Ribosomal Proteins L2, RNA binding domain SPy_0052 PF03947 Ribosomal Proteins L2, C-terminal domain SPy_0053 PF00203 Ribosomal protein S19 SPy_0055 PF00237 Ribosomal protein L22p/L17e SPy_0056 PF00189 Ribosomal protein S3, C-terminal domain SPy_0056 PF07650 KH domain SPy_0057 PF00252 Ribosomal protein L16p/L10e SPy_0059 PF00831 Ribosomal L29 protein SPy_0060 PF00366 Ribosomal protein S17 SPy_0061 PF00238 Ribosomal protein L14p/L23e SPy_0062 PF00467 KOW motif SPy_0062 PF17136 SPy_0062 SPy_0063 PF00281 Ribosomal protein L5 SPy_0063 PF00673 ribosomal L5P family C-terminus SPy_0064 PF00253 Ribosomal protein S14p/S29e SPy_0065 PF00410 Ribosomal protein S8 SPy_0066 PF00347 Ribosomal protein L6 SPy_0067 PF00861 Ribosomal L18p/L5e family SPy_0069 PF00333 Ribosomal protein S5, N-terminal domain SPy_0069 PF03719 Ribosomal protein S5, C-terminal domain SPy_0071 PF00327 Ribosomal protein L30p/L7e SPy_0072 PF00828 Ribosomal protein L18e/L15 SPy_0073 PF00344 SecY translocase SPy_0074 PF00406 Adenylate kinase SPy_0075 PF01176 Translation initiation factor 1A / IF-1 SPy_0076 PF00444 Ribosomal protein L36 SPy_0077 PF00416 Ribosomal protein S13/S18 SPy_0078 PF00411 Ribosomal protein S11 SPy_0080 PF01000 RNA polymerase Rpb3/RpoA insert domain SPy_0080 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SPy_0080 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SPy_0092 PF01047 MarR family SPy_0093 PF00005 ABC transporter SPy_0094 PF00950 SPy_0094 SPy_0095 PF01230 HIT domain SPy_0096 PF00579 tRNA synthetases class I (W and Y) SPy_0096 PF01479 S4 domain SPy_0097 PF00905 Penicillin binding protein transpeptidase domain SPy_0097 PF00912 Transglycosylase SPy_0098 PF00562 RNA polymerase Rpb2, domain 6 SPy_0098 PF04560 RNA polymerase Rpb2, domain 7 SPy_0098 PF04561 RNA polymerase Rpb2, domain 2 SPy_0098 PF04563 RNA polymerase beta subunit SPy_0098 PF04565 RNA polymerase Rpb2, domain 3 SPy_0098 PF10385 RNA polymerase beta subunit external 1 domain SPy_0099 PF00623 RNA polymerase Rpb1, domain 2 SPy_0099 PF04983 RNA polymerase Rpb1, domain 3 SPy_0099 PF04997 RNA polymerase Rpb1, domain 1 SPy_0099 PF04998 RNA polymerase Rpb1, domain 5 SPy_0099 PF05000 RNA polymerase Rpb1, domain 4 SPy_0100 PF06279 SPy_0100 SPy_0101 PF00437 Type II/IV secretion system protein SPy_0102 PF00482 Type II secretion system (T2SS), protein F SPy_0103 PF07963 Prokaryotic N-terminal methylation motif SPy_0105 PF11773 SPy_0105 SPy_0106 PF15980 SPy_0106 SPy_0108 PF02384 N-6 DNA Methylase SPy_0109 PF00871 Acetokinase family SPy_0112 PF03807 NADP oxidoreductase coenzyme F420-dependent SPy_0112 PF14748 Pyrroline-5-carboxylate reductase dimerisation SPy_0115 PF05343 M42 glutamyl aminopeptidase SPy_0117 PF15513 Domain of unknown function (DUF4651) SPy_0121 PF01712 Deoxynucleoside kinase SPy_0122 PF01207 Dihydrouridine synthase (Dus) SPy_0123 PF01430 Hsp33 protein SPy_0124 PF05043 Mga helix-turn-helix domain SPy_0124 PF08270 SPy_0124 SPy_0124 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPy_0128 PF12892 T surface-antigen of pili SPy_0129 PF04203 Sortase family SPy_0131 PF03050 SPy_0131 SPy_0131 PF13005 SPy_0131 SPy_0131 PF13817 SPy_0131 SPy_0133 PF05717 SPy_0133 SPy_0135 PF04203 Sortase family SPy_0137 PF02667 SPy_0137 SPy_0140 PF00108 Thiolase, N-terminal domain SPy_0140 PF02803 Thiolase, C-terminal domain SPy_0141 PF01144 Coenzyme A transferase SPy_0142 PF01144 Coenzyme A transferase SPy_0144 PF08348 SPy_0144 SPy_0144 PF13309 SPy_0144 SPy_0145 PF01042 Endoribonuclease L-PSP SPy_0146 PF13303 SPy_0146 SPy_0148 PF01496 V-type ATPase 116kDa subunit family SPy_0149 PF00137 ATP synthase subunit C SPy_0151 PF01992 ATP synthase (C/AC39) subunit SPy_0154 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPy_0154 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPy_0154 PF16886 SPy_0154 SPy_0155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPy_0155 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPy_0157 PF01813 ATP synthase subunit D SPy_0158 PF05816 SPy_0158 SPy_0160 PF00709 Adenylosuccinate synthetase SPy_0163 PF02608 Basic membrane protein SPy_0164 PF00467 KOW motif SPy_0164 PF02357 Transcription termination factor nusG SPy_0165 PF07461 Nicotine adenine dinucleotide glycohydrolase (NADase) SPy_0166 PF16718 SPy_0166 SPy_0167 PF01289 Thiol-activated cytolysin SPy_0172 PF01053 Cys/Met metabolism PLP-dependent enzyme SPy_0173 PF00133 tRNA synthetases class I (I, L, M and V) SPy_0173 PF08264 Anticodon-binding domain of tRNA SPy_0173 PF09334 tRNA synthetases class I (M) SPy_0173 PF13603 Leucyl-tRNA synthetase, Domain 2 SPy_0174 PF03611 SPy_0174 SPy_0175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_0176 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPy_0177 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPy_0178 PF01261 Xylose isomerase-like TIM barrel SPy_0179 PF00596 Class II Aldolase and Adducin N-terminal domain SPy_0181 PF00874 PRD domain SPy_0181 PF08279 HTH domain SPy_0182 PF13483 Beta-lactamase superfamily domain SPy_0183 PF00005 ABC transporter SPy_0183 PF00571 CBS domain SPy_0184 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0184 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SPy_0185 PF00476 DNA polymerase family A SPy_0185 PF01367 5'-3' exonuclease, C-terminal SAM fold SPy_0185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SPy_0186 PF13380 CoA binding domain SPy_0187 PF01475 Ferric uptake regulator family SPy_0189 PF11922 SPy_0189 SPy_0190 PF02195 ParB-like nuclease domain SPy_0195 PF01527 Transposase SPy_0196 PF07158 SPy_0196 SPy_0197 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SPy_0197 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SPy_0198 PF13276 SPy_0198 SPy_0198 PF13333 SPy_0198 SPy_0199 PF13518 Helix-turn-helix domain SPy_0201 PF06161 SPy_0201 SPy_0203 PF01702 Queuine tRNA-ribosyltransferase SPy_0205 PF05495 CHY zinc finger SPy_0207 PF02632 BioY family SPy_0208 PF12706 Beta-lactamase superfamily domain SPy_0210 PF01841 Transglutaminase-like superfamily SPy_0212 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPy_0212 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPy_0215 PF00342 Phosphoglucose isomerase SPy_0216 PF05043 Mga helix-turn-helix domain SPy_0216 PF08270 SPy_0216 SPy_0216 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPy_0223 PF01694 Rhomboid family SPy_0224 PF00483 Nucleotidyl transferase SPy_0226 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SPy_0226 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SPy_0228 PF12802 MarR family SPy_0229 PF00005 ABC transporter SPy_0229 PF00664 ABC transporter transmembrane region SPy_0230 PF00005 ABC transporter SPy_0230 PF00664 ABC transporter transmembrane region SPy_0233 PF02677 SPy_0233 SPy_0235 PF00692 dUTPase SPy_0236 PF13481 AAA domain SPy_0236 PF13541 Subunit ChlI of Mg-chelatase SPy_0237 PF00484 Carbonic anhydrase SPy_0238 PF01987 Mitochondrial biogenesis AIM24 SPy_0239 PF00749 tRNA synthetases class I (E and Q), catalytic domain SPy_0242 PF14501 GHKL domain SPy_0244 PF14501 GHKL domain SPy_0245 PF00072 Response regulator receiver domain SPy_0245 PF04397 LytTr DNA-binding domain SPy_0246 PF00825 Ribonuclease P SPy_0247 PF02096 60Kd inner membrane protein SPy_0248 PF01424 R3H domain SPy_0248 PF13083 KH domain SPy_0248 PF14804 Jag N-terminus SPy_0250 PF00468 Ribosomal protein L34 SPy_0251 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPy_0252 PF01547 Bacterial extracellular solute-binding protein SPy_0254 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0255 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0256 PF04854 SPy_0256 SPy_0257 PF00701 Dihydrodipicolinate synthetase family SPy_0258 PF00480 ROK family SPy_0259 PF01380 SIS domain SPy_0259 PF01418 Helix-turn-helix domain, rpiR family SPy_0260 PF01026 TatD related DNase SPy_0261 PF13331 SPy_0261 SPy_0261 PF13662 Toprim domain SPy_0262 PF00398 Ribosomal RNA adenine dimethylase SPy_0263 PF03193 Protein of unknown function, DUF258 SPy_0263 PF16745 SPy_0263 SPy_0264 PF00834 Ribulose-phosphate 3 epimerase family SPy_0265 PF04263 Thiamin pyrophosphokinase, catalytic domain SPy_0265 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SPy_0266 PF02646 SPy_0266 SPy_0267 PF01966 HD domain SPy_0268 PF00156 Phosphoribosyl transferase domain SPy_0268 PF09182 Bacterial purine repressor, N-terminal SPy_0271 PF00164 Ribosomal protein S12/S23 SPy_0272 PF00177 Ribosomal protein S7p/S5e SPy_0273 PF00009 Elongation factor Tu GTP binding domain SPy_0273 PF00679 Elongation factor G C-terminus SPy_0273 PF03144 Elongation factor Tu domain 2 SPy_0273 PF03764 Elongation factor G, domain IV SPy_0273 PF14492 Elongation Factor G, domain II SPy_0274 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SPy_0274 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SPy_0276 PF00005 ABC transporter SPy_0277 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPy_0277 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0278 PF09972 SPy_0278 SPy_0280 PF02673 SPy_0280 SPy_0281 PF05389 Negative regulator of genetic competence (MecA) SPy_0282 PF00953 Glycosyl transferase family 4 SPy_0285 PF00005 ABC transporter SPy_0287 PF01458 Uncharacterized protein family (UPF0051) SPy_0288 PF00266 Aminotransferase class-V SPy_0289 PF01592 NifU-like N terminal domain SPy_0290 PF01458 Uncharacterized protein family (UPF0051) SPy_0292 PF00768 D-alanyl-D-alanine carboxypeptidase SPy_0292 PF07943 Penicillin-binding protein 5, C-terminal domain SPy_0294 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0295 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0295 PF12911 SPy_0295 SPy_0296 PF00005 ABC transporter SPy_0296 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPy_0297 PF00005 ABC transporter SPy_0297 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPy_0298 PF13333 SPy_0298 SPy_0303 PF01609 Transposase DDE domain SPy_0303 PF13808 SPy_0303 SPy_0305 PF13419 Haloacid dehalogenase-like hydrolase SPy_0306 PF01926 50S ribosome-binding GTPase SPy_0307 PF01985 CRS1 / YhbY (CRM) domain SPy_0308 PF01467 Cytidylyltransferase SPy_0309 PF01966 HD domain SPy_0310 PF02410 Oligomerisation domain SPy_0312 PF13649 Methyltransferase domain SPy_0314 PF05636 HIGH Nucleotidyl Transferase SPy_0316 PF01709 Transcriptional regulator SPy_0317 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPy_0319 PF03180 NLPA lipoprotein SPy_0320 PF00005 ABC transporter SPy_0320 PF09383 NIL domain SPy_0321 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0323 PF05525 SPy_0323 SPy_0324 PF00375 Sodium:dicarboxylate symporter family SPy_0326 PF02254 TrkA-N domain SPy_0327 PF02386 Cation transport protein SPy_0329 PF02527 rRNA small subunit methyltransferase G SPy_0330 PF04011 LemA family SPy_0331 PF01435 Peptidase family M48 SPy_0334 PF02620 SPy_0334 SPy_0336 PF00512 His Kinase A (phospho-acceptor) domain SPy_0336 PF00672 HAMP domain SPy_0336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_0338 PF03477 ATP cone domain SPy_0339 PF07261 Replication initiation and membrane attachment SPy_0340 PF01695 IstB-like ATP binding protein SPy_0340 PF07319 Primosomal protein DnaI N-terminus SPy_0341 PF01926 50S ribosome-binding GTPase SPy_0341 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SPy_0342 PF00176 SNF2 family N-terminal domain SPy_0342 PF00271 Helicase conserved C-terminal domain SPy_0342 PF04434 SPy_0342 SPy_0342 PF08455 SPy_0342 SPy_0345 PF01225 Mur ligase family, catalytic domain SPy_0345 PF02875 Mur ligase family, glutamate ligase domain SPy_0345 PF08245 Mur ligase middle domain SPy_0346 PF13673 Acetyltransferase (GNAT) domain SPy_0348 PF02618 YceG-like family SPy_0349 PF01272 Transcription elongation factor, GreA/GreB, C-term SPy_0349 PF03449 Transcription elongation factor, N-terminal SPy_0351 PF02096 60Kd inner membrane protein SPy_0352 PF00708 Acylphosphatase SPy_0356 PF00588 SpoU rRNA Methylase family SPy_0356 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPy_0358 PF01027 Inhibitor of apoptosis-promoting Bax1 SPy_0359 PF03672 SPy_0359 SPy_0361 PF01177 Asp/Glu/Hydantoin racemase SPy_0362 PF01725 Ham1 family SPy_0363 PF12850 Calcineurin-like phosphoesterase superfamily domain SPy_0364 PF00571 CBS domain SPy_0365 PF00589 Phage integrase family SPy_0366 PF02616 ScpA/B protein SPy_0367 PF04079 Putative transcriptional regulators (Ypuh-like) SPy_0369 PF00849 RNA pseudouridylate synthase SPy_0369 PF01479 S4 domain SPy_0370 PF01809 SPy_0370 SPy_0371 PF00588 SpoU rRNA Methylase family SPy_0373 PF12822 Protein of unknown function (DUF3816) SPy_0374 PF01569 PAP2 superfamily SPy_0376 PF04055 Radical SAM superfamily SPy_0376 PF16199 SPy_0376 SPy_0377 PF06962 Putative rRNA methylase SPy_0378 PF00571 CBS domain SPy_0378 PF01595 SPy_0378 SPy_0378 PF03471 Transporter associated domain SPy_0379 PF04055 Radical SAM superfamily SPy_0379 PF13353 4Fe-4S single cluster domain SPy_0380 PF01368 DHH family SPy_0380 PF02833 DHHA2 domain SPy_0382 PF08820 SPy_0382 SPy_0383 PF01032 FecCD transport family SPy_0384 PF01032 FecCD transport family SPy_0385 PF01497 Periplasmic binding protein SPy_0386 PF00005 ABC transporter SPy_0388 PF02875 Mur ligase family, glutamate ligase domain SPy_0388 PF08245 Mur ligase middle domain SPy_0390 PF01943 SPy_0390 SPy_0390 PF14667 Polysaccharide biosynthesis C-terminal domain SPy_0392 PF14681 Uracil phosphoribosyltransferase SPy_0395 PF00574 Clp protease SPy_0397 PF09902 SPy_0397 SPy_0399 PF02223 Thymidylate kinase SPy_0400 PF13177 DNA polymerase III, delta subunit SPy_0401 PF04468 SPy_0401 SPy_0405 PF06156 SPy_0405 SPy_0406 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SPy_0408 PF03932 CutC family SPy_0410 PF03960 ArsC family SPy_0412 PF03372 Endonuclease/Exonuclease/phosphatase family SPy_0414 PF01070 FMN-dependent dehydrogenase SPy_0416 PF00082 Subtilase family SPy_0416 PF02225 PA domain SPy_0416 PF04650 SPy_0416 SPy_0416 PF06280 Fn3-like domain (DUF1034) SPy_0421 PF06912 SPy_0421 SPy_0422 PF01588 Putative tRNA binding domain SPy_0422 PF09334 tRNA synthetases class I (M) SPy_0425 PF00268 Ribonucleotide reductase, small chain SPy_0426 PF07972 NrdI Flavodoxin like SPy_0427 PF00317 Ribonucleotide reductase, all-alpha domain SPy_0427 PF02867 Ribonucleotide reductase, barrel domain SPy_0427 PF08343 Ribonucleotide reductase N-terminal SPy_0428 PF03496 ADP-ribosyltransferase exoenzyme SPy_0436 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPy_0436 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPy_0439 PF11195 SPy_0439 SPy_0440 PF13561 Enoyl-(Acyl carrier protein) reductase SPy_0441 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPy_0441 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPy_0442 PF07690 Major Facilitator Superfamily SPy_0443 PF00132 Bacterial transferase hexapeptide (six repeats) SPy_0443 PF12804 MobA-like NTP transferase domain SPy_0444 PF00293 NUDIX domain SPy_0447 PF01048 Phosphorylase superfamily SPy_0450 PF01325 Iron dependent repressor, N-terminal DNA binding domain SPy_0450 PF02742 Iron dependent repressor, metal binding and dimerisation domain SPy_0450 PF04023 FeoA domain SPy_0453 PF01297 Periplasmic solute binding protein family SPy_0454 PF00005 ABC transporter SPy_0456 PF00950 SPy_0456 SPy_0457 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPy_0458 PF01580 FtsK/SpoIIIE family SPy_0458 PF09397 Ftsk gamma domain SPy_0459 PF11877 SPy_0459 SPy_0460 PF00298 Ribosomal protein L11, RNA binding domain SPy_0460 PF03946 Ribosomal protein L11, N-terminal domain SPy_0461 PF00687 Ribosomal protein L1p/L10e family SPy_0462 PF00696 Amino acid kinase family SPy_0463 PF01765 Ribosome recycling factor SPy_0464 PF13509 S1 domain SPy_0466 PF01625 Peptide methionine sulfoxide reductase SPy_0467 PF06855 Protein of unknown function (DUF1250) SPy_0469 PF01476 LysM domain SPy_0470 PF06100 Streptococcal 67 kDa myosin-cross-reactive antigen like family SPy_0471 PF02562 PhoH-like protein SPy_0472 PF03167 Uracil DNA glycosylase superfamily SPy_0473 PF02130 Uncharacterized protein family UPF0054 SPy_0475 PF01219 Prokaryotic diacylglycerol kinase SPy_0476 PF01926 50S ribosome-binding GTPase SPy_0476 PF07650 KH domain SPy_0477 PF00293 NUDIX domain SPy_0479 PF10439 SPy_0479 SPy_0480 PF10439 SPy_0480 SPy_0496 PF01381 Helix-turn-helix SPy_0497 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SPy_0497 PF06827 Zinc finger found in FPG and IleRS SPy_0497 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SPy_0498 PF01121 Dephospho-CoA kinase SPy_0500 PF05872 SPy_0500 SPy_0501 PF07690 Major Facilitator Superfamily SPy_0502 PF03840 Preprotein translocase SecG subunit SPy_0503 PF00575 S1 RNA binding domain SPy_0503 PF00773 RNB domain SPy_0503 PF08206 Ribonuclease B OB domain SPy_0504 PF01668 SmpB protein SPy_0505 PF05096 Glutamine cyclotransferase SPy_0506 PF01470 Pyroglutamyl peptidase SPy_0507 PF06166 SPy_0507 SPy_0508 PF06149 SPy_0508 SPy_0510 PF00535 Glycosyl transferase family 2 SPy_0511 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPy_0512 PF00881 Nitroreductase family SPy_0513 PF00557 Metallopeptidase family M24 SPy_0513 PF01321 Creatinase/Prolidase N-terminal domain SPy_0514 PF00356 Bacterial regulatory proteins, lacI family SPy_0514 PF13377 Periplasmic binding protein-like domain SPy_0515 PF00534 Glycosyl transferases group 1 SPy_0515 PF13439 Glycosyltransferase Family 4 SPy_0516 PF00534 Glycosyl transferases group 1 SPy_0516 PF13439 Glycosyltransferase Family 4 SPy_0517 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPy_0517 PF02824 TGS domain SPy_0517 PF03129 Anticodon binding domain SPy_0517 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPy_0518 PF00005 ABC transporter SPy_0519 PF06182 SPy_0519 SPy_0521 PF06182 SPy_0521 SPy_0524 PF00108 Thiolase, N-terminal domain SPy_0524 PF02803 Thiolase, C-terminal domain SPy_0526 PF00501 AMP-binding enzyme SPy_0527 PF11311 SPy_0527 SPy_0528 PF00072 Response regulator receiver domain SPy_0528 PF00486 Transcriptional regulatory protein, C terminal SPy_0529 PF00512 His Kinase A (phospho-acceptor) domain SPy_0529 PF00989 PAS fold SPy_0529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_0530 PF00753 Metallo-beta-lactamase superfamily SPy_0531 PF00035 Double-stranded RNA binding motif SPy_0531 PF14622 Ribonuclease-III-like SPy_0532 PF02463 RecF/RecN/SMC N terminal domain SPy_0532 PF06470 SMC proteins Flexible Hinge Domain SPy_0534 PF08501 Shikimate dehydrogenase substrate binding domain SPy_0535 PF01261 Xylose isomerase-like TIM barrel SPy_0536 PF01996 F420-0:Gamma-glutamyl ligase SPy_0538 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) SPy_0540 PF00535 Glycosyl transferase family 2 SPy_0542 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPy_0542 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SPy_0542 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPy_0543 PF07690 Major Facilitator Superfamily SPy_0544 PF13443 Cro/C1-type HTH DNA-binding domain SPy_0545 PF10088 SPy_0545 SPy_0550 PF04221 RelB antitoxin SPy_0552 PF05016 Plasmid stabilisation system protein SPy_0555 PF04860 Phage portal protein SPy_0559 PF00152 tRNA synthetases class II (D, K and N) SPy_0560 PF13535 ATP-grasp domain SPy_0567 PF08282 haloacid dehalogenase-like hydrolase SPy_0568 PF08282 haloacid dehalogenase-like hydrolase SPy_0569 PF00448 SRP54-type protein, GTPase domain SPy_0569 PF02881 SRP54-type protein, helical bundle domain SPy_0570 PF07690 Major Facilitator Superfamily SPy_0571 PF00874 PRD domain SPy_0571 PF03123 CAT RNA binding domain SPy_0572 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPy_0572 PF00367 phosphotransferase system, EIIB SPy_0572 PF02378 Phosphotransferase system, EIIC SPy_0574 PF00232 Glycosyl hydrolase family 1 SPy_0575 PF09323 SPy_0575 SPy_0576 PF03773 SPy_0576 SPy_0580 PF00575 S1 RNA binding domain SPy_0580 PF09371 Tex-like protein N-terminal domain SPy_0580 PF12836 Helix-hairpin-helix motif SPy_0580 PF16921 SPy_0580 SPy_0581 PF10263 SPy_0581 SPy_0583 PF04024 SPy_0583 SPy_0584 PF02603 HPr Serine kinase N terminus SPy_0584 PF07475 HPr Serine kinase C-terminal domain SPy_0585 PF01790 SPy_0585 SPy_0587 PF06103 SPy_0587 SPy_0588 PF12732 SPy_0588 SPy_0589 PF11674 SPy_0589 SPy_0590 PF01136 SPy_0590 SPy_0591 PF01136 SPy_0591 SPy_0591 PF16325 SPy_0591 SPy_0593 PF02229 Transcriptional Coactivator p15 (PC4) SPy_0595 PF00152 tRNA synthetases class II (D, K and N) SPy_0595 PF01336 OB-fold nucleic acid binding domain SPy_0596 PF13419 Haloacid dehalogenase-like hydrolase SPy_0598 PF00300 Histidine phosphatase superfamily (branch 1) SPy_0599 PF04073 Aminoacyl-tRNA editing domain SPy_0600 PF09515 Thiamine transporter protein (Thia_YuaJ) SPy_0601 PF01183 Glycosyl hydrolases family 25 SPy_0603 PF07155 ECF-type riboflavin transporter, S component SPy_0604 PF14478 Domain of unknown function (DUF4430) SPy_0605 PF00255 Glutathione peroxidase SPy_0606 PF01432 Peptidase family M3 SPy_0606 PF08439 Oligopeptidase F SPy_0608 PF00311 Phosphoenolpyruvate carboxylase SPy_0609 PF01098 SPy_0609 SPy_0611 PF00009 Elongation factor Tu GTP binding domain SPy_0611 PF03143 Elongation factor Tu C-terminal domain SPy_0611 PF03144 Elongation factor Tu domain 2 SPy_0613 PF00121 Triosephosphate isomerase SPy_0615 PF02388 FemAB family SPy_0616 PF02388 FemAB family SPy_0617 PF08282 haloacid dehalogenase-like hydrolase SPy_0621 PF01966 HD domain SPy_0622 PF09148 Domain of unknown function (DUF1934) SPy_0623 PF00122 E1-E2 ATPase SPy_0623 PF00689 Cation transporting ATPase, C-terminus SPy_0623 PF00690 Cation transporter/ATPase, N-terminus SPy_0623 PF00702 haloacid dehalogenase-like hydrolase SPy_0627 PF00356 Bacterial regulatory proteins, lacI family SPy_0627 PF13407 Periplasmic binding protein domain SPy_0628 PF07940 Heparinase II/III-like protein SPy_0628 PF16889 SPy_0628 SPy_0629 PF03613 SPy_0629 SPy_0630 PF03609 SPy_0630 SPy_0631 PF03830 PTS system sorbose subfamily IIB component SPy_0632 PF07470 Glycosyl Hydrolase Family 88 SPy_0634 PF03610 PTS system fructose IIA component SPy_0636 PF13561 Enoyl-(Acyl carrier protein) reductase SPy_0637 PF02502 Ribose/Galactose Isomerase SPy_0637 PF12408 Ribose-5-phosphate isomerase SPy_0638 PF00294 pfkB family carbohydrate kinase SPy_0639 PF01081 KDPG and KHG aldolase SPy_0640 PF13419 Haloacid dehalogenase-like hydrolase SPy_0642 PF08331 SPy_0642 SPy_0642 PF13484 SPy_0642 SPy_0643 PF00472 RF-1 domain SPy_0643 PF03462 PCRF domain SPy_0644 PF00005 ABC transporter SPy_0645 PF02687 SPy_0645 SPy_0646 PF00753 Metallo-beta-lactamase superfamily SPy_0649 PF00270 DEAD/DEAH box helicase SPy_0649 PF00929 Exonuclease SPy_0649 PF13307 Helicase C-terminal domain SPy_0650 PF00155 Aminotransferase class I and II SPy_0651 PF00152 tRNA synthetases class II (D, K and N) SPy_0651 PF01336 OB-fold nucleic acid binding domain SPy_0652 PF03668 SPy_0652 SPy_0653 PF01933 Uncharacterised protein family UPF0052 SPy_0654 PF02650 WhiA C-terminal HTH domain SPy_0654 PF10298 WhiA N-terminal LAGLIDADG-like domain SPy_0654 PF14527 WhiA LAGLIDADG-like domain SPy_0655 PF00239 Resolvase, N terminal domain SPy_0655 PF07508 Recombinase SPy_0655 PF13408 Recombinase zinc beta ribbon domain SPy_0657 PF00717 Peptidase S24-like SPy_0657 PF01381 Helix-turn-helix SPy_0658 PF01381 Helix-turn-helix SPy_0663 PF13476 AAA domain SPy_0664 PF13479 SPy_0664 SPy_0669 PF00271 Helicase conserved C-terminal domain SPy_0669 PF04851 Type III restriction enzyme, res subunit SPy_0671 PF08707 SPy_0671 SPy_0671 PF13481 AAA domain SPy_0673 PF05866 Endodeoxyribonuclease RusA SPy_0676 PF02384 N-6 DNA Methylase SPy_0679 PF01555 DNA methylase SPy_0679 PF02195 ParB-like nuclease domain SPy_0681 PF04466 Phage terminase large subunit SPy_0682 PF05133 Phage portal protein, SPP1 Gp6-like SPy_0683 PF06152 SPy_0683 SPy_0688 PF05065 Phage capsid family SPy_0690 PF10665 SPy_0690 SPy_0691 PF11114 SPy_0691 SPy_0693 PF12691 SPy_0693 SPy_0696 PF06854 SPy_0696 SPy_0698 PF05709 Phage tail protein SPy_0701 PF07212 Hyaluronidase protein (HylP) SPy_0702 PF07902 SPy_0702 SPy_0703 PF07761 SPy_0703 SPy_0705 PF07104 SPy_0705 SPy_0707 PF04531 SPy_0707 SPy_0710 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPy_0710 PF05257 CHAP domain SPy_0710 PF08460 Bacterial SH3 domain SPy_0711 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPy_0711 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPy_0712 PF13930 DNA/RNA non-specific endonuclease SPy_0713 PF03577 SPy_0713 SPy_0714 PF01297 Periplasmic solute binding protein family SPy_0714 PF09223 YodA lipocalin-like domain SPy_0715 PF00392 Bacterial regulatory proteins, gntR family SPy_0715 PF07702 UTRA domain SPy_0716 PF01380 SIS domain SPy_0717 PF01197 Ribosomal protein L31 SPy_0720 PF01368 DHH family SPy_0720 PF02272 DHHA1 domain SPy_0721 PF00258 Flavodoxin SPy_0722 PF01817 Chorismate mutase type II SPy_0723 PF00654 Voltage gated chloride channel SPy_0724 PF01245 Ribosomal protein L19 SPy_0725 PF00589 Phage integrase family SPy_0726 PF13419 Haloacid dehalogenase-like hydrolase SPy_0727 PF00204 DNA gyrase B SPy_0727 PF00986 DNA gyrase B subunit, carboxyl terminus SPy_0727 PF01751 Toprim domain SPy_0727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_0728 PF06160 SPy_0728 SPy_0729 PF07997 Protein of unknown function (DUF1694) SPy_0731 PF00113 Enolase, C-terminal TIM barrel domain SPy_0731 PF03952 Enolase, N-terminal domain SPy_0732 PF02371 SPy_0732 SPy_0737 PF00746 SPy_0737 SPy_0737 PF07564 SPy_0737 SPy_0739 PF00881 Nitroreductase family SPy_0741 PF02624 YcaO-like family SPy_0742 PF02517 CAAX protease self-immunity SPy_0744 PF00005 ABC transporter SPy_0745 PF12698 ABC-2 family transporter protein SPy_0746 PF12698 ABC-2 family transporter protein SPy_0747 PF03372 Endonuclease/Exonuclease/phosphatase family SPy_0749 PF06177 SPy_0749 SPy_0751 PF00533 BRCA1 C Terminus (BRCT) domain SPy_0751 PF01653 NAD-dependent DNA ligase adenylation domain SPy_0751 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SPy_0751 PF03120 NAD-dependent DNA ligase OB-fold domain SPy_0751 PF12826 Helix-hairpin-helix motif SPy_0751 PF14520 Helix-hairpin-helix domain SPy_0752 PF00781 Diacylglycerol kinase catalytic domain SPy_0754 PF00137 ATP synthase subunit C SPy_0755 PF00119 ATP synthase A chain SPy_0756 PF00430 ATP synthase B/B' CF(0) SPy_0757 PF00213 ATP synthase delta (OSCP) subunit SPy_0758 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPy_0758 PF00306 ATP synthase alpha/beta chain, C terminal domain SPy_0758 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPy_0759 PF00231 ATP synthase SPy_0760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPy_0760 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPy_0761 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SPy_0761 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SPy_0762 PF06612 SPy_0762 SPy_0763 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPy_0764 PF11772 SPy_0764 SPy_0766 PF01223 DNA/RNA non-specific endonuclease SPy_0768 PF01409 tRNA synthetases class II core domain (F) SPy_0768 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SPy_0769 PF01588 Putative tRNA binding domain SPy_0769 PF03147 Ferredoxin-fold anticodon binding domain SPy_0769 PF03483 B3/4 domain SPy_0769 PF03484 tRNA synthetase B5 domain SPy_0770 PF02566 OsmC-like protein SPy_0771 PF08349 SPy_0771 SPy_0772 PF02687 SPy_0772 SPy_0773 PF00005 ABC transporter SPy_0775 PF04228 SPy_0775 SPy_0776 PF12705 PD-(D/E)XK nuclease superfamily SPy_0777 PF00580 UvrD/REP helicase N-terminal domain SPy_0777 PF12705 PD-(D/E)XK nuclease superfamily SPy_0777 PF13361 UvrD-like helicase C-terminal domain SPy_0778 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPy_0779 PF01165 Ribosomal protein S21 SPy_0780 PF01741 Large-conductance mechanosensitive channel, MscL SPy_0781 PF01807 CHC2 zinc finger SPy_0781 PF08275 DNA primase catalytic core, N-terminal domain SPy_0781 PF10410 DnaB-helicase binding domain of primase SPy_0781 PF13155 Toprim-like SPy_0782 PF00140 Sigma-70 factor, region 1 SPy_0782 PF03979 Sigma-70 factor, region 1 SPy_0782 PF04539 Sigma-70 region 3 SPy_0782 PF04542 Sigma-70 region 2 SPy_0782 PF04545 Sigma-70, region 4 SPy_0783 PF01883 Domain of unknown function DUF59 SPy_0784 PF04321 RmlD substrate binding domain SPy_0786 PF09314 SPy_0786 SPy_0787 PF00535 Glycosyl transferase family 2 SPy_0789 PF01061 SPy_0789 SPy_0790 PF00005 ABC transporter SPy_0791 PF00535 Glycosyl transferase family 2 SPy_0792 PF05045 SPy_0792 SPy_0793 PF00884 Sulfatase SPy_0794 PF00535 Glycosyl transferase family 2 SPy_0796 PF10066 SPy_0796 SPy_0798 PF09913 SPy_0798 SPy_0799 PF01546 Peptidase family M20/M25/M40 SPy_0799 PF07687 Peptidase dimerisation domain SPy_0801 PF13459 4Fe-4S single cluster domain SPy_0803 PF02224 Cytidylate kinase SPy_0804 PF00707 Translation initiation factor IF-3, C-terminal domain SPy_0804 PF05198 Translation initiation factor IF-3, N-terminal domain SPy_0805 PF01632 Ribosomal protein L35 SPy_0806 PF00453 Ribosomal protein L20 SPy_0807 PF00884 Sulfatase SPy_0808 PF10672 S-adenosylmethionine-dependent methyltransferase SPy_0809 PF01487 Type I 3-dehydroquinase SPy_0810 PF01264 Chorismate synthase SPy_0811 PF06133 Protein of unknown function (DUF964) SPy_0813 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPy_0813 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPy_0814 PF08245 Mur ligase middle domain SPy_0816 PF00266 Aminotransferase class-V SPy_0817 PF02568 Thiamine biosynthesis protein (ThiI) SPy_0817 PF02926 THUMP domain SPy_0818 PF09587 Bacterial capsule synthesis protein PGA_cap SPy_0819 PF00829 Ribosomal prokaryotic L21 protein SPy_0821 PF04327 Protein of unknown function (DUF464) SPy_0822 PF01016 Ribosomal L27 protein SPy_0824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPy_0824 PF03466 LysR substrate binding domain SPy_0826 PF01252 SPy_0826 SPy_0827 PF00849 RNA pseudouridylate synthase SPy_0827 PF01479 S4 domain SPy_0830 PF00156 Phosphoribosyl transferase domain SPy_0831 PF00860 Permease family SPy_0832 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPy_0832 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPy_0833 PF00117 Glutamine amidotransferase class-I SPy_0833 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SPy_0835 PF02142 MGS-like domain SPy_0835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPy_0835 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SPy_0836 PF16576 SPy_0836 SPy_0837 PF00005 ABC transporter SPy_0838 PF02687 SPy_0838 SPy_0838 PF12704 MacB-like periplasmic core domain SPy_0839 PF03009 Glycerophosphoryl diester phosphodiesterase family SPy_0839 PF10110 SPy_0839 SPy_0840 PF00886 Ribosomal protein S16 SPy_0841 PF13083 KH domain SPy_0843 PF13306 Leucine rich repeats (6 copies) SPy_0844 PF01243 Pyridoxamine 5'-phosphate oxidase SPy_0845 PF01545 Cation efflux family SPy_0846 PF00440 Bacterial regulatory proteins, tetR family SPy_0846 PF14278 SPy_0846 SPy_0847 PF01782 RimM N-terminal domain SPy_0847 PF05239 PRC-barrel domain SPy_0849 PF01746 tRNA (Guanine-1)-methyltransferase SPy_0850 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPy_0851 PF13303 SPy_0851 SPy_0852 PF02558 Ketopantoate reductase PanE/ApbA SPy_0852 PF08546 Ketopantoate reductase PanE/ApbA C terminal SPy_0853 PF00455 SPy_0853 SPy_0853 PF08220 DeoR-like helix-turn-helix domain SPy_0854 PF00294 pfkB family carbohydrate kinase SPy_0855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPy_0855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_0855 PF02378 Phosphotransferase system, EIIC SPy_0856 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPy_0857 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPy_0861 PF09028 Mac 1 SPy_0864 PF06619 Protein of unknown function (DUF1149) SPy_0865 PF02645 Uncharacterised protein, DegV family COG1307 SPy_0866 PF01743 Poly A polymerase head domain SPy_0866 PF12627 Probable RNA and SrmB- binding site of polymerase A SPy_0866 PF13735 tRNA nucleotidyltransferase domain 2 putative SPy_0867 PF00005 ABC transporter SPy_0867 PF12848 ABC transporter SPy_0867 PF16326 SPy_0867 SPy_0870 PF01327 Polypeptide deformylase SPy_0872 PF00149 Calcineurin-like phosphoesterase SPy_0872 PF02872 5'-nucleotidase, C-terminal domain SPy_0873 PF04607 Region found in RelA / SpoT proteins SPy_0874 PF00072 Response regulator receiver domain SPy_0874 PF00486 Transcriptional regulatory protein, C terminal SPy_0875 PF00512 His Kinase A (phospho-acceptor) domain SPy_0875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_0876 PF00288 GHMP kinases N terminal domain SPy_0876 PF08544 GHMP kinases C terminal SPy_0877 PF00288 GHMP kinases N terminal domain SPy_0877 PF08544 GHMP kinases C terminal SPy_0878 PF00288 GHMP kinases N terminal domain SPy_0878 PF08544 GHMP kinases C terminal SPy_0879 PF01070 FMN-dependent dehydrogenase SPy_0880 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SPy_0881 PF00195 Chalcone and stilbene synthases, N-terminal domain SPy_0881 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SPy_0882 PF00303 Thymidylate synthase SPy_0883 PF00186 Dihydrofolate reductase SPy_0885 PF06689 ClpX C4-type zinc finger SPy_0885 PF07724 AAA domain (Cdc48 subfamily) SPy_0885 PF10431 C-terminal, D2-small domain, of ClpB protein SPy_0886 PF01926 50S ribosome-binding GTPase SPy_0888 PF00004 ATPase family associated with various cellular activities (AAA) SPy_0888 PF07724 AAA domain (Cdc48 subfamily) SPy_0888 PF10431 C-terminal, D2-small domain, of ClpB protein SPy_0889 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SPy_0890 PF01676 Metalloenzyme superfamily SPy_0891 PF03960 ArsC family SPy_0892 PF01048 Phosphorylase superfamily SPy_0894 PF01048 Phosphorylase superfamily SPy_0895 PF09659 SPy_0895 SPy_0898 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPy_0898 PF03466 LysR substrate binding domain SPy_0900 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPy_0901 PF00156 Phosphoribosyl transferase domain SPy_0902 PF01425 Amidase SPy_0903 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPy_0904 PF00528 Binding-protein-dependent transport system inner membrane component SPy_0905 PF03167 Uracil DNA glycosylase superfamily SPy_0907 PF01979 Amidohydrolase family SPy_0908 PF02660 SPy_0908 SPy_0909 PF00204 DNA gyrase B SPy_0909 PF00986 DNA gyrase B subunit, carboxyl terminus SPy_0909 PF01751 Toprim domain SPy_0909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_0910 PF00521 DNA gyrase/topoisomerase IV, subunit A SPy_0910 PF03989 DNA gyrase C-terminal domain, beta-propeller SPy_0911 PF01063 Aminotransferase class IV SPy_0912 PF11184 SPy_0912 SPy_0913 PF00575 S1 RNA binding domain SPy_0915 PF00581 Rhodanese-like domain SPy_0915 PF12368 SPy_0915 SPy_0917 PF00043 Glutathione S-transferase, C-terminal domain SPy_0918 PF03595 Voltage-dependent anion channel SPy_0919 PF11240 SPy_0919 SPy_0921 PF01715 IPP transferase SPy_0922 PF01926 50S ribosome-binding GTPase SPy_0922 PF13167 SPy_0922 SPy_0922 PF16360 SPy_0922 SPy_0924 PF00753 Metallo-beta-lactamase superfamily SPy_0924 PF12706 Beta-lactamase superfamily domain SPy_0925 PF00106 short chain dehydrogenase SPy_0926 PF01368 DHH family SPy_0926 PF02272 DHHA1 domain SPy_0926 PF10141 SPy_0926 SPy_0927 PF00156 Phosphoribosyl transferase domain SPy_0928 PF07261 Replication initiation and membrane attachment SPy_0929 PF00633 Helix-hairpin-helix motif SPy_0929 PF00730 HhH-GPD superfamily base excision DNA repair protein SPy_0929 PF10576 Iron-sulfur binding domain of endonuclease III SPy_0930 PF04816 Family of unknown function (DUF633) SPy_0931 PF01784 NIF3 (NGG1p interacting factor 3) SPy_0932 PF01266 FAD dependent oxidoreductase SPy_0933 PF00483 Nucleotidyl transferase SPy_0935 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SPy_0936 PF16363 SPy_0936 SPy_0937 PF00589 Phage integrase family SPy_0938 PF02452 PemK-like protein SPy_0939 PF00717 Peptidase S24-like SPy_0939 PF01381 Helix-turn-helix SPy_0942 PF14337 SPy_0942 SPy_0945 PF13443 Cro/C1-type HTH DNA-binding domain SPy_0946 PF03374 SPy_0946 SPy_0946 PF08346 SPy_0946 SPy_0948 PF09509 SPy_0948 SPy_0953 PF07261 Replication initiation and membrane attachment SPy_0958 PF03837 SPy_0958 SPy_0959 PF07083 SPy_0959 SPy_0965 PF07852 SPy_0965 SPy_0971 PF03592 Terminase small subunit SPy_0972 PF04466 Phage terminase large subunit SPy_0975 PF04233 SPy_0975 SPy_0980 PF02498 SPy_0980 SPy_0980 PF03374 SPy_0980 SPy_0981 PF14265 SPy_0981 SPy_0984 PF03864 Phage major capsid protein E SPy_0985 PF12949 HeH/LEM domain SPy_0986 PF05135 Phage gp6-like head-tail connector protein SPy_0988 PF04883 SPy_0988 SPy_0991 PF06199 SPy_0991 SPy_0992 PF12363 SPy_0992 SPy_0995 PF05709 Phage tail protein SPy_0996 PF06605 Prophage endopeptidase tail SPy_0997 PF07212 Hyaluronidase protein (HylP) SPy_0998 PF07902 SPy_0998 SPy_1001 PF07104 SPy_1001 SPy_1006 PF01183 Glycosyl hydrolases family 25 SPy_1007 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPy_1007 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPy_1008 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPy_1008 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPy_1010 PF00293 NUDIX domain SPy_1011 PF01594 SPy_1011 SPy_1012 PF13181 Tetratricopeptide repeat SPy_1013 PF05670 SPy_1013 SPy_1013 PF05833 Fibronectin-binding protein A N-terminus (FbpA) SPy_1016 PF04392 ABC transporter substrate binding protein SPy_1018 PF02653 SPy_1018 SPy_1019 PF00005 ABC transporter SPy_1020 PF00753 Metallo-beta-lactamase superfamily SPy_1020 PF07521 RNA-metabolising metallo-beta-lactamase SPy_1022 PF00756 Putative esterase SPy_1025 PF00005 ABC transporter SPy_1025 PF12848 ABC transporter SPy_1026 PF00676 Dehydrogenase E1 component SPy_1028 PF02779 Transketolase, pyrimidine binding domain SPy_1028 PF02780 Transketolase, C-terminal domain SPy_1029 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SPy_1029 PF00364 Biotin-requiring enzyme SPy_1029 PF02817 e3 binding domain SPy_1031 PF00364 Biotin-requiring enzyme SPy_1031 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPy_1031 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPy_1032 PF02278 Polysaccharide lyase family 8, super-sandwich domain SPy_1032 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SPy_1033 PF03099 Biotin/lipoate A/B protein ligase family SPy_1033 PF10437 Bacterial lipoate protein ligase C-terminus SPy_1034 PF07685 CobB/CobQ-like glutamine amidotransferase domain SPy_1035 PF08245 Mur ligase middle domain SPy_1035 PF08353 SPy_1035 SPy_1036 PF02457 DisA bacterial checkpoint controller nucleotide-binding SPy_1037 PF07949 YbbR-like protein SPy_1038 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPy_1038 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPy_1038 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPy_1038 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPy_1040 PF04055 Radical SAM superfamily SPy_1040 PF06969 HemN C-terminal domain SPy_1042 PF01643 Acyl-ACP thioesterase SPy_1043 PF13242 HAD-hyrolase-like SPy_1043 PF13344 Haloacid dehalogenase-like hydrolase SPy_1044 PF07314 SPy_1044 SPy_1046 PF13395 HNH endonuclease SPy_1046 PF16592 SPy_1046 SPy_1046 PF16593 SPy_1046 SPy_1046 PF16595 SPy_1046 SPy_1047 PF01867 CRISPR associated protein Cas1 SPy_1048 PF09827 CRISPR associated protein Cas2 SPy_1049 PF09711 CRISPR-associated protein (Cas_Csn2) SPy_1053 PF00009 Elongation factor Tu GTP binding domain SPy_1053 PF00679 Elongation factor G C-terminus SPy_1053 PF03144 Elongation factor Tu domain 2 SPy_1053 PF06421 GTP-binding protein LepA C-terminus SPy_1053 PF14492 Elongation Factor G, domain II SPy_1054 PF00746 SPy_1054 SPy_1054 PF01391 Collagen triple helix repeat (20 copies) SPy_1055 PF01641 SelR domain SPy_1056 PF03601 SPy_1056 SPy_1057 PF03610 PTS system fructose IIA component SPy_1058 PF03830 PTS system sorbose subfamily IIB component SPy_1059 PF03609 SPy_1059 SPy_1060 PF03613 SPy_1060 SPy_1061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_1061 PF06580 SPy_1061 SPy_1062 PF00072 Response regulator receiver domain SPy_1062 PF12833 Helix-turn-helix domain SPy_1063 PF13343 Bacterial extracellular solute-binding protein SPy_1064 PF03692 SPy_1064 SPy_1065 PF00132 Bacterial transferase hexapeptide (six repeats) SPy_1065 PF12464 Maltose acetyltransferase SPy_1065 PF14602 Hexapeptide repeat of succinyl-transferase SPy_1066 PF13419 Haloacid dehalogenase-like hydrolase SPy_1067 PF00171 Aldehyde dehydrogenase family SPy_1068 PF01541 GIY-YIG catalytic domain SPy_1068 PF02151 UvrB/uvrC motif SPy_1068 PF08459 UvrC Helix-hairpin-helix N-terminal SPy_1069 PF00881 Nitroreductase family SPy_1070 PF01546 Peptidase family M20/M25/M40 SPy_1071 PF01926 50S ribosome-binding GTPase SPy_1071 PF10396 GTP-binding protein TrmE N-terminus SPy_1071 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE SPy_1072 PF00466 Ribosomal protein L10 SPy_1073 PF00542 Ribosomal protein L7/L12 C-terminal domain SPy_1073 PF16320 SPy_1073 SPy_1077 PF00145 C-5 cytosine-specific DNA methylase SPy_1080 PF11083 SPy_1080 SPy_1081 PF00072 Response regulator receiver domain SPy_1081 PF00486 Transcriptional regulatory protein, C terminal SPy_1082 PF00512 His Kinase A (phospho-acceptor) domain SPy_1082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_1084 PF00005 ABC transporter SPy_1085 PF00005 ABC transporter SPy_1088 PF12844 Helix-turn-helix domain SPy_1093 PF00768 D-alanyl-D-alanine carboxypeptidase SPy_1093 PF07943 Penicillin-binding protein 5, C-terminal domain SPy_1094 PF01522 Polysaccharide deacetylase SPy_1096 PF08245 Mur ligase middle domain SPy_1097 PF01227 GTP cyclohydrolase I SPy_1098 PF00809 Pterin binding enzyme SPy_1099 PF02152 Dihydroneopterin aldolase SPy_1100 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SPy_1101 PF01565 FAD binding domain SPy_1101 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SPy_1102 PF00005 ABC transporter SPy_1102 PF08402 TOBE domain SPy_1103 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1104 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1105 PF13416 Bacterial extracellular solute-binding protein SPy_1106 PF00072 Response regulator receiver domain SPy_1107 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPy_1107 PF17203 SPy_1107 SPy_1109 PF03390 SPy_1109 SPy_1110 PF00390 Malic enzyme, N-terminal domain SPy_1110 PF03949 Malic enzyme, NAD binding domain SPy_1111 PF00107 Zinc-binding dehydrogenase SPy_1111 PF08240 Alcohol dehydrogenase GroES-like domain SPy_1113 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SPy_1114 PF00654 Voltage gated chloride channel SPy_1115 PF13472 GDSL-like Lipase/Acylhydrolase family SPy_1117 PF01594 SPy_1117 SPy_1118 PF04002 RadC-like JAB domain SPy_1119 PF07722 Peptidase C26 SPy_1120 PF02629 CoA binding domain SPy_1120 PF06971 Putative DNA-binding protein N-terminus SPy_1121 PF08866 Putative amino acid metabolism SPy_1122 PF00266 Aminotransferase class-V SPy_1123 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPy_1123 PF14572 Phosphoribosyl synthetase-associated domain SPy_1124 PF01928 CYTH domain SPy_1125 PF04607 Region found in RelA / SpoT proteins SPy_1126 PF01513 ATP-NAD kinase SPy_1127 PF00849 RNA pseudouridylate synthase SPy_1128 PF01515 Phosphate acetyl/butaryl transferase SPy_1133 PF00005 ABC transporter SPy_1134 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1134 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SPy_1135 PF00478 IMP dehydrogenase / GMP reductase domain SPy_1136 PF00156 Phosphoribosyl transferase domain SPy_1137 PF00860 Permease family SPy_1138 PF02424 ApbE family SPy_1139 PF01361 Tautomerase enzyme SPy_1140 PF00265 Thymidine kinase SPy_1141 PF00472 RF-1 domain SPy_1141 PF03462 PCRF domain SPy_1142 PF05175 Methyltransferase small domain SPy_1143 PF01300 Telomere recombination SPy_1144 PF00583 Acetyltransferase (GNAT) family SPy_1145 PF00464 Serine hydroxymethyltransferase SPy_1146 PF04245 SPy_1146 SPy_1147 PF13702 Lysozyme-like SPy_1148 PF00005 ABC transporter SPy_1148 PF00664 ABC transporter transmembrane region SPy_1149 PF00005 ABC transporter SPy_1149 PF00664 ABC transporter transmembrane region SPy_1150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPy_1150 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPy_1151 PF00056 lactate/malate dehydrogenase, NAD binding domain SPy_1151 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SPy_1152 PF00521 DNA gyrase/topoisomerase IV, subunit A SPy_1152 PF03989 DNA gyrase C-terminal domain, beta-propeller SPy_1154 PF04203 Sortase family SPy_1155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPy_1158 PF00781 Diacylglycerol kinase catalytic domain SPy_1159 PF03006 SPy_1159 SPy_1160 PF08876 SPy_1160 SPy_1161 PF01926 50S ribosome-binding GTPase SPy_1162 PF01351 Ribonuclease HII SPy_1163 PF02481 DNA recombination-mediator protein A SPy_1164 PF01131 DNA topoisomerase SPy_1164 PF01396 SPy_1164 SPy_1164 PF01751 Toprim domain SPy_1169 PF13303 SPy_1169 SPy_1170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SPy_1170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SPy_1171 PF16264 SPy_1171 SPy_1172 PF11750 SPy_1172 SPy_1173 PF01134 Glucose inhibited division protein A SPy_1174 PF00682 HMGL-like SPy_1174 PF02436 Conserved carboxylase domain SPy_1175 PF04277 SPy_1175 SPy_1176 PF00364 Biotin-requiring enzyme SPy_1177 PF03977 SPy_1177 SPy_1178 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SPy_1179 PF00392 Bacterial regulatory proteins, gntR family SPy_1179 PF07729 FCD domain SPy_1180 PF03600 Citrate transporter SPy_1183 PF00364 Biotin-requiring enzyme SPy_1184 PF03977 SPy_1184 SPy_1186 PF06857 SPy_1186 SPy_1188 PF03328 HpcH/HpaI aldolase/citrate lyase family SPy_1189 PF04223 Citrate lyase, alpha subunit (CitF) SPy_1190 PF03802 SPy_1190 SPy_1191 PF00682 HMGL-like SPy_1191 PF02436 Conserved carboxylase domain SPy_1192 PF08218 Citrate lyase ligase C-terminal domain SPy_1196 PF00589 Phage integrase family SPy_1196 PF13495 Phage integrase, N-terminal SAM-like domain SPy_1198 PF00717 Peptidase S24-like SPy_1198 PF01381 Helix-turn-helix SPy_1200 PF00448 SRP54-type protein, GTPase domain SPy_1200 PF02881 SRP54-type protein, helical bundle domain SPy_1200 PF02978 Signal peptide binding domain SPy_1201 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SPy_1202 PF00392 Bacterial regulatory proteins, gntR family SPy_1202 PF07702 UTRA domain SPy_1204 PF00117 Glutamine amidotransferase class-I SPy_1204 PF00958 GMP synthase C terminal domain SPy_1204 PF02540 NAD synthase SPy_1205 PF02388 FemAB family SPy_1206 PF00005 ABC transporter SPy_1206 PF12848 ABC transporter SPy_1208 PF07155 ECF-type riboflavin transporter, S component SPy_1209 PF08543 Phosphomethylpyrimidine kinase SPy_1210 PF00155 Aminotransferase class I and II SPy_1210 PF00392 Bacterial regulatory proteins, gntR family SPy_1211 PF03477 ATP cone domain SPy_1212 PF13091 PLD-like domain SPy_1213 PF01268 Formate--tetrahydrofolate ligase SPy_1214 PF03099 Biotin/lipoate A/B protein ligase family SPy_1214 PF10437 Bacterial lipoate protein ligase C-terminus SPy_1216 PF01661 Macro domain SPy_1217 PF01597 Glycine cleavage H-protein SPy_1218 PF00296 Luciferase-like monooxygenase SPy_1219 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SPy_1220 PF03099 Biotin/lipoate A/B protein ligase family SPy_1221 PF04127 DNA / pantothenate metabolism flavoprotein SPy_1222 PF02441 Flavoprotein SPy_1223 PF12822 Protein of unknown function (DUF3816) SPy_1224 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPy_1224 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPy_1224 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPy_1224 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPy_1225 PF02653 SPy_1225 SPy_1226 PF02653 SPy_1226 SPy_1227 PF00005 ABC transporter SPy_1228 PF02608 Basic membrane protein SPy_1230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPy_1232 PF05175 Methyltransferase small domain SPy_1233 PF00485 Phosphoribulokinase / Uridine kinase family SPy_1234 PF01649 Ribosomal protein S20 SPy_1236 PF00512 His Kinase A (phospho-acceptor) domain SPy_1236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_1237 PF00072 Response regulator receiver domain SPy_1237 PF00486 Transcriptional regulatory protein, C terminal SPy_1239 PF01433 Peptidase family M1 SPy_1239 PF11838 ERAP1-like C-terminal domain SPy_1240 PF01895 PhoU domain SPy_1241 PF00005 ABC transporter SPy_1242 PF00005 ABC transporter SPy_1243 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1244 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1245 PF12849 PBP superfamily domain SPy_1246 PF01189 NOL1/NOP2/sun family SPy_1246 PF13636 pre-rRNA processing and ribosome biogenesis SPy_1246 PF17125 SPy_1246 SPy_1246 PF17126 SPy_1246 SPy_1247 PF00459 Inositol monophosphatase family SPy_1248 PF05256 Uncharacterised protein family (UPF0223) SPy_1249 PF03960 ArsC family SPy_1250 PF01687 Riboflavin kinase SPy_1250 PF06574 FAD synthetase SPy_1251 PF01509 TruB family pseudouridylate synthase (N terminal domain) SPy_1251 PF16198 SPy_1251 SPy_1252 PF09903 SPy_1252 SPy_1253 PF06081 SPy_1253 SPy_1253 PF11728 DUF939 C-terminal domain SPy_1255 PF02687 SPy_1255 SPy_1257 PF00005 ABC transporter SPy_1258 PF00440 Bacterial regulatory proteins, tetR family SPy_1259 PF00392 Bacterial regulatory proteins, gntR family SPy_1259 PF02080 TrkA-C domain SPy_1260 PF03780 SPy_1260 SPy_1261 PF05532 CsbD-like SPy_1262 PF03780 SPy_1262 SPy_1263 PF10031 SPy_1263 SPy_1265 PF04226 SPy_1265 SPy_1267 PF00580 UvrD/REP helicase N-terminal domain SPy_1267 PF13361 UvrD-like helicase C-terminal domain SPy_1270 PF01235 SPy_1270 SPy_1272 PF01545 Cation efflux family SPy_1272 PF16916 SPy_1272 SPy_1273 PF07373 SPy_1273 SPy_1274 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPy_1275 PF00005 ABC transporter SPy_1276 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1277 PF03831 PhnA protein SPy_1277 PF08274 PhnA Zinc-Ribbon SPy_1280 PF01380 SIS domain SPy_1280 PF13522 Glutamine amidotransferase domain SPy_1281 PF00717 Peptidase S24-like SPy_1281 PF10502 Signal peptidase, peptidase S26 SPy_1282 PF00224 Pyruvate kinase, barrel domain SPy_1282 PF02887 Pyruvate kinase, alpha/beta domain SPy_1283 PF00365 Phosphofructokinase SPy_1284 PF01336 OB-fold nucleic acid binding domain SPy_1284 PF02811 PHP domain SPy_1284 PF07733 Bacterial DNA polymerase III alpha subunit SPy_1284 PF14579 Helix-hairpin-helix motif SPy_1285 PF00392 Bacterial regulatory proteins, gntR family SPy_1286 PF00005 ABC transporter SPy_1288 PF09335 SPy_1288 SPy_1290 PF12978 Domain of Unknown Function with PDB structure (DUF3862) SPy_1291 PF00343 Carbohydrate phosphorylase SPy_1292 PF02446 4-alpha-glucanotransferase SPy_1293 PF00356 Bacterial regulatory proteins, lacI family SPy_1293 PF13377 Periplasmic binding protein-like domain SPy_1294 PF13416 Bacterial extracellular solute-binding protein SPy_1295 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1296 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1297 PF00356 Bacterial regulatory proteins, lacI family SPy_1299 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1301 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1302 PF00128 Alpha amylase, catalytic domain SPy_1302 PF00686 Starch binding domain SPy_1302 PF01833 IPT/TIG domain SPy_1302 PF02806 Alpha amylase, C-terminal all-beta domain SPy_1304 PF00128 Alpha amylase, catalytic domain SPy_1304 PF02903 Alpha amylase, N-terminal ig-like domain SPy_1306 PF13416 Bacterial extracellular solute-binding protein SPy_1308 PF07859 alpha/beta hydrolase fold SPy_1309 PF04914 DltD C-terminal region SPy_1309 PF04915 DltD N-terminal region SPy_1309 PF04918 DltD central region SPy_1310 PF00550 Phosphopantetheine attachment site SPy_1311 PF03062 SPy_1311 SPy_1312 PF00501 AMP-binding enzyme SPy_1312 PF13193 AMP-binding enzyme C-terminal domain SPy_1314 PF00271 Helicase conserved C-terminal domain SPy_1314 PF02151 UvrB/uvrC motif SPy_1314 PF04851 Type III restriction enzyme, res subunit SPy_1314 PF12344 Ultra-violet resistance protein B SPy_1315 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPy_1315 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1316 PF00005 ABC transporter SPy_1322 PF11687 SPy_1322 SPy_1323 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPy_1324 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_1325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPy_1325 PF00874 PRD domain SPy_1325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_1325 PF05043 Mga helix-turn-helix domain SPy_1325 PF08279 HTH domain SPy_1326 PF05913 Bacterial protein of unknown function (DUF871) SPy_1328 PF00232 Glycosyl hydrolase family 1 SPy_1329 PF04973 SPy_1329 SPy_1333 PF01018 GTP1/OBG SPy_1333 PF01926 50S ribosome-binding GTPase SPy_1333 PF09269 Domain of unknown function (DUF1967) SPy_1335 PF13518 Helix-turn-helix domain SPy_1336 PF13276 SPy_1336 SPy_1336 PF13333 SPy_1336 SPy_1337 PF00849 RNA pseudouridylate synthase SPy_1337 PF01479 S4 domain SPy_1339 PF03061 Thioesterase superfamily SPy_1340 PF07690 Major Facilitator Superfamily SPy_1343 PF08903 Domain of unknown function (DUF1846) SPy_1344 PF03061 Thioesterase superfamily SPy_1345 PF01048 Phosphorylase superfamily SPy_1346 PF01938 TRAM domain SPy_1346 PF05958 tRNA (Uracil-5-)-methyltransferase SPy_1350 PF03816 Cell envelope-related transcriptional attenuator domain SPy_1351 PF01202 Shikimate kinase SPy_1352 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPy_1353 PF03631 SPy_1353 SPy_1354 PF00557 Metallopeptidase family M24 SPy_1355 PF00392 Bacterial regulatory proteins, gntR family SPy_1355 PF00571 CBS domain SPy_1355 PF03061 Thioesterase superfamily SPy_1355 PF07085 DRTGG domain SPy_1356 PF13302 Acetyltransferase (GNAT) domain SPy_1357 PF00746 SPy_1357 SPy_1358 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPy_1359 PF00438 S-adenosylmethionine synthetase, N-terminal domain SPy_1359 PF02772 S-adenosylmethionine synthetase, central domain SPy_1359 PF02773 S-adenosylmethionine synthetase, C-terminal domain SPy_1361 PF04270 Streptococcal histidine triad protein SPy_1361 PF12799 Leucine Rich repeats (2 copies) SPy_1362 PF02237 Biotin protein ligase C terminal domain SPy_1362 PF03099 Biotin/lipoate A/B protein ligase family SPy_1362 PF08279 HTH domain SPy_1363 PF11676 SPy_1363 SPy_1364 PF12169 DNA polymerase III subunits gamma and tau domain III SPy_1364 PF13177 DNA polymerase III, delta subunit SPy_1365 PF13185 GAF domain SPy_1366 PF13367 SPy_1366 SPy_1367 PF06961 SPy_1367 SPy_1368 PF00485 Phosphoribulokinase / Uridine kinase family SPy_1369 PF00270 DEAD/DEAH box helicase SPy_1369 PF00271 Helicase conserved C-terminal domain SPy_1370 PF01522 Polysaccharide deacetylase SPy_1371 PF00171 Aldehyde dehydrogenase family SPy_1372 PF00391 PEP-utilising enzyme, mobile domain SPy_1372 PF02896 PEP-utilising enzyme, TIM barrel domain SPy_1372 PF05524 PEP-utilising enzyme, N-terminal SPy_1373 PF00381 PTS HPr component phosphorylation site SPy_1374 PF00462 Glutaredoxin SPy_1375 PF00317 Ribonucleotide reductase, all-alpha domain SPy_1375 PF02867 Ribonucleotide reductase, barrel domain SPy_1375 PF08343 Ribonucleotide reductase N-terminal SPy_1378 PF00268 Ribonucleotide reductase, small chain SPy_1379 PF00654 Voltage gated chloride channel SPy_1384 PF02517 CAAX protease self-immunity SPy_1385 PF11368 SPy_1385 SPy_1386 PF01381 Helix-turn-helix SPy_1389 PF01411 tRNA synthetases class II (A) SPy_1389 PF02272 DHHA1 domain SPy_1389 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPy_1390 PF13145 PPIC-type PPIASE domain SPy_1391 PF01596 O-methyltransferase SPy_1392 PF07690 Major Facilitator Superfamily SPy_1393 PF01432 Peptidase family M3 SPy_1393 PF08439 Oligopeptidase F SPy_1395 PF06054 SPy_1395 SPy_1398 PF00849 RNA pseudouridylate synthase SPy_1398 PF01479 S4 domain SPy_1399 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SPy_1400 PF02547 Queuosine biosynthesis protein SPy_1401 PF11311 SPy_1401 SPy_1402 PF13354 Beta-lactamase enzyme family SPy_1406 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SPy_1406 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SPy_1407 PF06144 DNA polymerase III, delta subunit SPy_1408 PF00753 Metallo-beta-lactamase superfamily SPy_1408 PF03772 SPy_1408 SPy_1408 PF13567 SPy_1408 SPy_1409 PF10531 SLBB domain SPy_1409 PF12836 Helix-hairpin-helix motif SPy_1410 PF01553 Acyltransferase SPy_1411 PF05175 Methyltransferase small domain SPy_1412 PF01541 GIY-YIG catalytic domain SPy_1414 PF02705 SPy_1414 SPy_1415 PF00270 DEAD/DEAH box helicase SPy_1415 PF00271 Helicase conserved C-terminal domain SPy_1416 PF00009 Elongation factor Tu GTP binding domain SPy_1416 PF03144 Elongation factor Tu domain 2 SPy_1416 PF16658 SPy_1416 SPy_1419 PF09529 SPy_1419 SPy_1420 PF01225 Mur ligase family, catalytic domain SPy_1420 PF02875 Mur ligase family, glutamate ligase domain SPy_1420 PF08245 Mur ligase middle domain SPy_1421 PF01820 D-ala D-ala ligase N-terminus SPy_1421 PF07478 D-ala D-ala ligase C-terminus SPy_1422 PF02132 RecR protein SPy_1422 PF13662 Toprim domain SPy_1424 PF01226 Formate/nitrite transporter SPy_1427 PF02829 3H domain SPy_1427 PF08279 HTH domain SPy_1429 PF00300 Histidine phosphatase superfamily (branch 1) SPy_1432 PF01180 Dihydroorotate dehydrogenase SPy_1434 PF00122 E1-E2 ATPase SPy_1434 PF00702 haloacid dehalogenase-like hydrolase SPy_1436 PF13930 DNA/RNA non-specific endonuclease SPy_1438 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPy_1438 PF05257 CHAP domain SPy_1438 PF08460 Bacterial SH3 domain SPy_1440 PF04531 SPy_1440 SPy_1442 PF07104 SPy_1442 SPy_1443 PF07761 SPy_1443 SPy_1444 PF07902 SPy_1444 SPy_1445 PF07212 Hyaluronidase protein (HylP) SPy_1455 PF09355 SPy_1455 SPy_1457 PF05065 Phage capsid family SPy_1459 PF14265 SPy_1459 SPy_1465 PF05133 Phage portal protein, SPP1 Gp6-like SPy_1468 PF01844 HNH endonuclease SPy_1469 PF07374 SPy_1469 SPy_1470 PF02384 N-6 DNA Methylase SPy_1473 PF07066 Lactococcus phage M3 protein SPy_1475 PF12684 PDDEXK-like domain of unknown function (DUF3799) SPy_1477 PF03837 SPy_1477 SPy_1482 PF07261 Replication initiation and membrane attachment SPy_1485 PF01381 Helix-turn-helix SPy_1486 PF00717 Peptidase S24-like SPy_1486 PF01381 Helix-turn-helix SPy_1487 PF08797 HIRAN domain SPy_1488 PF00589 Phage integrase family SPy_1488 PF14659 Phage integrase, N-terminal SAM-like domain SPy_1489 PF00216 Bacterial DNA-binding protein SPy_1491 PF09911 SPy_1491 SPy_1492 PF13472 GDSL-like Lipase/Acylhydrolase family SPy_1493 PF02645 Uncharacterised protein, DegV family COG1307 SPy_1495 PF02463 RecF/RecN/SMC N terminal domain SPy_1496 PF01316 Arginine repressor, DNA binding domain SPy_1496 PF02863 Arginine repressor, C-terminal domain SPy_1497 PF01479 S4 domain SPy_1497 PF01728 FtsJ-like methyltransferase SPy_1498 PF00348 Polyprenyl synthetase SPy_1499 PF02609 Exonuclease VII small subunit SPy_1500 PF02601 SPy_1500 SPy_1500 PF13742 SPy_1500 SPy_1502 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SPy_1502 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SPy_1503 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPy_1503 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPy_1503 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPy_1503 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPy_1505 PF00875 DNA photolyase SPy_1505 PF03441 FAD binding domain of DNA photolyase SPy_1506 PF00005 ABC transporter SPy_1507 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1508 PF08796 Protein of unknown function (DUF1797) SPy_1509 PF00004 ATPase family associated with various cellular activities (AAA) SPy_1509 PF02151 UvrB/uvrC motif SPy_1509 PF07724 AAA domain (Cdc48 subfamily) SPy_1509 PF10431 C-terminal, D2-small domain, of ClpB protein SPy_1510 PF00293 NUDIX domain SPy_1511 PF08860 Domain of unknown function (DUF1827) SPy_1513 PF00133 tRNA synthetases class I (I, L, M and V) SPy_1513 PF08264 Anticodon-binding domain of tRNA SPy_1514 PF05103 DivIVA protein SPy_1515 PF01479 S4 domain SPy_1516 PF02325 SPy_1516 SPy_1518 PF04472 Protein of unknown function (DUF552) SPy_1519 PF01168 Alanine racemase, N-terminal domain SPy_1520 PF00091 Tubulin/FtsZ family, GTPase domain SPy_1520 PF12327 FtsZ family, C-terminal domain SPy_1521 PF02491 SHS2 domain inserted in FTSA SPy_1521 PF11983 SPy_1521 SPy_1521 PF14450 Cell division protein FtsA SPy_1523 PF08478 POTRA domain, FtsQ-type SPy_1524 PF03033 Glycosyltransferase family 28 N-terminal domain SPy_1524 PF04101 Glycosyltransferase family 28 C-terminal domain SPy_1525 PF02875 Mur ligase family, glutamate ligase domain SPy_1525 PF08245 Mur ligase middle domain SPy_1526 PF11364 SPy_1526 SPy_1527 PF00009 Elongation factor Tu GTP binding domain SPy_1527 PF00679 Elongation factor G C-terminus SPy_1527 PF03144 Elongation factor Tu domain 2 SPy_1528 PF00581 Rhodanese-like domain SPy_1529 PF00480 ROK family SPy_1530 PF06014 Bacterial protein of unknown function (DUF910) SPy_1531 PF00210 Ferritin-like domain SPy_1533 PF04055 Radical SAM superfamily SPy_1533 PF13394 4Fe-4S single cluster domain SPy_1534 PF06265 Protein of unknown function (DUF1027) SPy_1535 PF00356 Bacterial regulatory proteins, lacI family SPy_1535 PF13377 Periplasmic binding protein-like domain SPy_1536 PF05362 Lon protease (S16) C-terminal proteolytic domain SPy_1536 PF13180 PDZ domain SPy_1537 PF01467 Cytidylyltransferase SPy_1538 PF03602 Conserved hypothetical protein 95 SPy_1539 PF03590 Aspartate-ammonia ligase SPy_1541 PF00696 Amino acid kinase family SPy_1542 PF01546 Peptidase family M20/M25/M40 SPy_1543 PF03606 SPy_1543 SPy_1544 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPy_1544 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPy_1546 PF13673 Acetyltransferase (GNAT) domain SPy_1547 PF02274 Amidinotransferase SPy_1548 PF00027 Cyclic nucleotide-binding domain SPy_1548 PF13545 Crp-like helix-turn-helix domain SPy_1549 PF01316 Arginine repressor, DNA binding domain SPy_1549 PF02863 Arginine repressor, C-terminal domain SPy_1551 PF03483 B3/4 domain SPy_1552 PF04237 YjbR SPy_1553 PF00672 HAMP domain SPy_1553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_1553 PF02743 Cache domain SPy_1553 PF06580 SPy_1553 SPy_1556 PF00072 Response regulator receiver domain SPy_1556 PF12833 Helix-turn-helix domain SPy_1557 PF01625 Peptide methionine sulfoxide reductase SPy_1557 PF01641 SelR domain SPy_1558 PF00578 AhpC/TSA family SPy_1559 PF02683 SPy_1559 SPy_1561 PF09827 CRISPR associated protein Cas2 SPy_1562 PF01867 CRISPR associated protein Cas1 SPy_1563 PF01930 Domain of unknown function DUF83 SPy_1564 PF05107 SPy_1564 SPy_1565 PF09709 SPy_1565 SPy_1566 PF09704 CRISPR-associated protein (Cas_Cas5) SPy_1567 PF00271 Helicase conserved C-terminal domain SPy_1567 PF01966 HD domain SPy_1567 PF04851 Type III restriction enzyme, res subunit SPy_1568 PF00133 tRNA synthetases class I (I, L, M and V) SPy_1568 PF08264 Anticodon-binding domain of tRNA SPy_1568 PF10458 Valyl tRNA synthetase tRNA binding arm SPy_1569 PF13238 AAA domain SPy_1571 PF14520 Helix-hairpin-helix domain SPy_1572 PF08930 Domain of unknown function (DUF1912) SPy_1574 PF01609 Transposase DDE domain SPy_1574 PF13808 SPy_1574 SPy_1576 PF00793 DAHP synthetase I family SPy_1577 PF01761 3-dehydroquinate synthase SPy_1580 PF07883 Cupin domain SPy_1581 PF07883 Cupin domain SPy_1582 PF13649 Methyltransferase domain SPy_1584 PF08501 Shikimate dehydrogenase substrate binding domain SPy_1586 PF00703 Glycosyl hydrolases family 2 SPy_1586 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SPy_1586 PF02837 Glycosyl hydrolases family 2, sugar binding domain SPy_1586 PF16355 SPy_1586 SPy_1587 PF00072 Response regulator receiver domain SPy_1587 PF12833 Helix-turn-helix domain SPy_1588 PF06580 SPy_1588 SPy_1589 PF04854 SPy_1589 SPy_1592 PF12010 SPy_1592 SPy_1592 PF13416 Bacterial extracellular solute-binding protein SPy_1593 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1595 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1596 PF00480 ROK family SPy_1599 PF00232 Glycosyl hydrolase family 1 SPy_1600 PF07555 beta-N-acetylglucosaminidase SPy_1602 PF00392 Bacterial regulatory proteins, gntR family SPy_1602 PF13377 Periplasmic binding protein-like domain SPy_1603 PF06824 Protein of unknown function (DUF1237) SPy_1604 PF01074 Glycosyl hydrolases family 38 N-terminal domain SPy_1604 PF07748 Glycosyl hydrolases family 38 C-terminal domain SPy_1604 PF09261 Alpha mannosidase, middle domain SPy_1605 PF14501 GHKL domain SPy_1606 PF01938 TRAM domain SPy_1606 PF05958 tRNA (Uracil-5-)-methyltransferase SPy_1607 PF02631 RecX family SPy_1608 PF04167 Protein of unknown function (DUF402) SPy_1613 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SPy_1613 PF16321 SPy_1613 SPy_1616 PF00270 DEAD/DEAH box helicase SPy_1616 PF00271 Helicase conserved C-terminal domain SPy_1617 PF01205 Uncharacterized protein family UPF0029 SPy_1617 PF09186 Domain of unknown function (DUF1949) SPy_1618 PF00291 Pyridoxal-phosphate dependent enzyme SPy_1619 PF00575 S1 RNA binding domain SPy_1620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPy_1620 PF08282 haloacid dehalogenase-like hydrolase SPy_1621 PF00072 Response regulator receiver domain SPy_1621 PF00196 Bacterial regulatory proteins, luxR family SPy_1622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_1622 PF07730 Histidine kinase SPy_1623 PF09922 Cell wall-active antibiotics response protein (DUF2154) SPy_1625 PF00069 Protein kinase domain SPy_1625 PF03793 PASTA domain SPy_1626 PF13672 Protein phosphatase 2C SPy_1627 PF01029 NusB family SPy_1627 PF01189 NOL1/NOP2/sun family SPy_1628 PF00551 Formyl transferase SPy_1628 PF02911 Formyl transferase, C-terminal domain SPy_1629 PF00271 Helicase conserved C-terminal domain SPy_1629 PF04851 Type III restriction enzyme, res subunit SPy_1630 PF01192 RNA polymerase Rpb6 SPy_1632 PF00625 Guanylate kinase SPy_1633 PF00013 KH domain SPy_1633 PF01966 HD domain SPy_1633 PF12072 SPy_1633 SPy_1634 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPy_1634 PF03466 LysR substrate binding domain SPy_1637 PF00108 Thiolase, N-terminal domain SPy_1637 PF02803 Thiolase, C-terminal domain SPy_1638 PF01144 Coenzyme A transferase SPy_1639 PF01144 Coenzyme A transferase SPy_1640 PF13561 Enoyl-(Acyl carrier protein) reductase SPy_1641 PF02447 SPy_1641 SPy_1642 PF02664 S-Ribosylhomocysteinase (LuxS) SPy_1644 PF01170 Putative RNA methylase family UPF0020 SPy_1644 PF02926 THUMP domain SPy_1646 PF05103 DivIVA protein SPy_1647 PF06908 Protein of unknown function (DUF1273) SPy_1648 PF03838 Recombination protein U SPy_1649 PF00905 Penicillin binding protein transpeptidase domain SPy_1649 PF00912 Transglycosylase SPy_1651 PF03051 Peptidase C1-like family SPy_1652 PF02540 NAD synthase SPy_1653 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SPy_1654 PF00324 Amino acid permease SPy_1656 PF13268 SPy_1656 SPy_1657 PF00005 ABC transporter SPy_1658 PF00528 Binding-protein-dependent transport system inner membrane component SPy_1659 PF00270 DEAD/DEAH box helicase SPy_1659 PF00271 Helicase conserved C-terminal domain SPy_1662 PF00953 Glycosyl transferase family 4 SPy_1662 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SPy_1664 PF00905 Penicillin binding protein transpeptidase domain SPy_1664 PF03717 Penicillin-binding Protein dimerisation domain SPy_1664 PF03793 PASTA domain SPy_1665 PF04977 Septum formation initiator SPy_1666 PF01795 MraW methylase family SPy_1670 PF00171 Aldehyde dehydrogenase family SPy_1672 PF00696 Amino acid kinase family SPy_1674 PF00005 ABC transporter SPy_1675 PF08951 Enterocin A Immunity SPy_1676 PF00456 Transketolase, thiamine diphosphate binding domain SPy_1676 PF02779 Transketolase, pyrimidine binding domain SPy_1676 PF02780 Transketolase, C-terminal domain SPy_1678 PF00923 Transaldolase SPy_1680 PF05043 Mga helix-turn-helix domain SPy_1681 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPy_1682 PF00230 Major intrinsic protein SPy_1683 PF01266 FAD dependent oxidoreductase SPy_1683 PF16901 SPy_1683 SPy_1684 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPy_1684 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPy_1686 PF03413 Peptidase propeptide and YPEB domain SPy_1687 PF05979 Bacterial protein of unknown function (DUF896) SPy_1688 PF02092 SPy_1688 SPy_1689 PF02091 Glycyl-tRNA synthetase alpha subunit SPy_1691 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SPy_1693 PF00248 Aldo/keto reductase family SPy_1694 PF01979 Amidohydrolase family SPy_1695 PF01895 PhoU domain SPy_1695 PF02690 SPy_1695 SPy_1698 PF02645 Uncharacterised protein, DegV family COG1307 SPy_1699 PF00440 Bacterial regulatory proteins, tetR family SPy_1700 PF08282 haloacid dehalogenase-like hydrolase SPy_1701 PF03458 SPy_1701 SPy_1704 PF01791 DeoC/LacD family aldolase SPy_1707 PF02502 Ribose/Galactose Isomerase SPy_1708 PF02502 Ribose/Galactose Isomerase SPy_1709 PF03611 SPy_1709 SPy_1710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_1711 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPy_1712 PF00455 SPy_1712 SPy_1712 PF08220 DeoR-like helix-turn-helix domain SPy_1714 PF00403 Heavy-metal-associated domain SPy_1715 PF00122 E1-E2 ATPase SPy_1715 PF00403 Heavy-metal-associated domain SPy_1715 PF00702 haloacid dehalogenase-like hydrolase SPy_1717 PF03965 Penicillinase repressor SPy_1718 PF07859 alpha/beta hydrolase fold SPy_1719 PF02033 Ribosome-binding factor A SPy_1721 PF00009 Elongation factor Tu GTP binding domain SPy_1721 PF04760 Translation initiation factor IF-2, N-terminal region SPy_1721 PF11987 Translation-initiation factor 2 SPy_1722 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SPy_1723 PF04296 Protein of unknown function (DUF448) SPy_1724 PF08529 NusA N-terminal domain SPy_1724 PF13184 NusA-like KH domain SPy_1725 PF02576 Uncharacterised BCR, YhbC family COG0779 SPy_1726 PF02390 Putative methyltransferase SPy_1727 PF01636 Phosphotransferase enzyme family SPy_1728 PF05975 SPy_1728 SPy_1729 PF00005 ABC transporter SPy_1730 PF01230 HIT domain SPy_1733 PF03816 Cell envelope-related transcriptional attenuator domain SPy_1734 PF00583 Acetyltransferase (GNAT) family SPy_1735 PF02367 Uncharacterised P-loop hydrolase UPF0079 SPy_1736 PF00860 Permease family SPy_1737 PF08282 haloacid dehalogenase-like hydrolase SPy_1738 PF03610 PTS system fructose IIA component SPy_1738 PF03830 PTS system sorbose subfamily IIB component SPy_1739 PF03609 SPy_1739 SPy_1740 PF03613 SPy_1740 SPy_1741 PF06115 SPy_1741 SPy_1742 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPy_1742 PF02403 Seryl-tRNA synthetase N-terminal domain SPy_1743 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SPy_1744 PF01039 Carboxyl transferase domain SPy_1745 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain SPy_1745 PF02785 Biotin carboxylase C-terminal domain SPy_1745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPy_1746 PF07977 FabA-like domain SPy_1747 PF00364 Biotin-requiring enzyme SPy_1748 PF00109 Beta-ketoacyl synthase, N-terminal domain SPy_1748 PF02801 Beta-ketoacyl synthase, C-terminal domain SPy_1749 PF13561 Enoyl-(Acyl carrier protein) reductase SPy_1750 PF00698 Acyl transferase domain SPy_1751 PF03060 Nitronate monooxygenase SPy_1753 PF00550 Phosphopantetheine attachment site SPy_1754 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SPy_1754 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SPy_1755 PF01047 MarR family SPy_1758 PF00378 Enoyl-CoA hydratase/isomerase family SPy_1759 PF00226 DnaJ domain SPy_1759 PF00684 DnaJ central domain SPy_1759 PF01556 DnaJ C terminal domain SPy_1760 PF00012 Hsp70 protein SPy_1761 PF01025 GrpE SPy_1763 PF01628 HrcA protein C terminal domain SPy_1763 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SPy_1764 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPy_1765 PF02557 D-alanyl-D-alanine carboxypeptidase SPy_1766 PF00300 Histidine phosphatase superfamily (branch 1) SPy_1768 PF04226 SPy_1768 SPy_1770 PF02637 GatB domain SPy_1770 PF02934 GatB/GatE catalytic domain SPy_1771 PF01425 Amidase SPy_1772 PF02686 Glu-tRNAGln amidotransferase C subunit SPy_1776 PF00857 Isochorismatase family SPy_1777 PF06018 CodY GAF-like domain SPy_1777 PF08222 CodY helix-turn-helix domain SPy_1779 PF00155 Aminotransferase class I and II SPy_1780 PF00582 Universal stress protein family SPy_1781 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SPy_1781 PF08282 haloacid dehalogenase-like hydrolase SPy_1782 PF00710 Asparaginase SPy_1784 PF00005 ABC transporter SPy_1785 PF00270 DEAD/DEAH box helicase SPy_1785 PF00271 Helicase conserved C-terminal domain SPy_1785 PF17191 SPy_1785 SPy_1787 PF00005 ABC transporter SPy_1788 PF02361 Cobalt transport protein SPy_1789 PF09605 SPy_1789 SPy_1790 PF00005 ABC transporter SPy_1790 PF00664 ABC transporter transmembrane region SPy_1791 PF00005 ABC transporter SPy_1791 PF00664 ABC transporter transmembrane region SPy_1793 PF00005 ABC transporter SPy_1794 PF01032 FecCD transport family SPy_1795 PF01497 Periplasmic binding protein SPy_1796 PF11545 Cell surface heme-binding protein Shp SPy_1798 PF05031 Iron Transport-associated domain SPy_1798 PF07550 SPy_1798 SPy_1798 PF13855 Leucine rich repeat SPy_1801 PF05257 CHAP domain SPy_1802 PF00842 Alanine racemase, C-terminal domain SPy_1802 PF01168 Alanine racemase, N-terminal domain SPy_1804 PF01648 4'-phosphopantetheinyl transferase superfamily SPy_1805 PF01043 SecA preprotein cross-linking domain SPy_1805 PF02810 SEC-C motif SPy_1805 PF07516 SecA Wing and Scaffold domain SPy_1805 PF07517 SecA DEAD-like domain SPy_1807 PF01609 Transposase DDE domain SPy_1807 PF13808 SPy_1807 SPy_1810 PF01238 Phosphomannose isomerase type I SPy_1811 PF00480 ROK family SPy_1815 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPy_1815 PF00367 phosphotransferase system, EIIB SPy_1815 PF02378 Phosphotransferase system, EIIC SPy_1816 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPy_1816 PF08244 Glycosyl hydrolases family 32 C terminal SPy_1817 PF00356 Bacterial regulatory proteins, lacI family SPy_1817 PF13377 Periplasmic binding protein-like domain SPy_1818 PF01029 NusB family SPy_1820 PF03780 SPy_1820 SPy_1821 PF01132 Elongation factor P (EF-P) OB domain SPy_1821 PF08207 Elongation factor P (EF-P) KOW-like domain SPy_1821 PF09285 Elongation factor P, C-terminal SPy_1823 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPy_1824 PF00557 Metallopeptidase family M24 SPy_1824 PF01321 Creatinase/Prolidase N-terminal domain SPy_1825 PF00005 ABC transporter SPy_1827 PF01544 CorA-like Mg2+ transporter protein SPy_1828 PF06570 SPy_1828 SPy_1829 PF01084 Ribosomal protein S18 SPy_1830 PF00436 Single-strand binding protein family SPy_1831 PF01250 Ribosomal protein S6 SPy_1833 PF00633 Helix-hairpin-helix motif SPy_1833 PF00730 HhH-GPD superfamily base excision DNA repair protein SPy_1833 PF14815 NUDIX domain SPy_1834 PF01381 Helix-turn-helix SPy_1835 PF00085 Thioredoxin SPy_1836 PF01569 PAP2 superfamily SPy_1837 PF00488 MutS domain V SPy_1837 PF01713 Smr domain SPy_1839 PF02674 SPy_1839 SPy_1841 PF01351 Ribonuclease HII SPy_1841 PF11858 Domain of unknown function (DUF3378) SPy_1842 PF00717 Peptidase S24-like SPy_1844 PF13538 UvrD-like helicase C-terminal domain SPy_1844 PF13604 AAA domain SPy_1844 PF14490 Helix-hairpin-helix containing domain SPy_1846 PF00817 impB/mucB/samB family SPy_1846 PF11798 IMS family HHH motif SPy_1846 PF11799 impB/mucB/samB family C-terminal domain SPy_1849 PF01228 Glycine radical SPy_1849 PF02901 Pyruvate formate lyase SPy_1850 PF00144 Beta-lactamase SPy_1851 PF14506 CppA N-terminal SPy_1851 PF14507 CppA C-terminal SPy_1852 PF01925 SPy_1852 SPy_1854 PF00230 Major intrinsic protein SPy_1856 PF07690 Major Facilitator Superfamily SPy_1857 PF13545 Crp-like helix-turn-helix domain SPy_1858 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPy_1858 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPy_1858 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPy_1861 PF01381 Helix-turn-helix SPy_1862 PF02575 YbaB/EbfC DNA-binding family SPy_1863 PF13411 MerR HTH family regulatory protein SPy_1864 PF00929 Exonuclease SPy_1865 PF04394 SPy_1865 SPy_1865 PF08279 HTH domain SPy_1866 PF03486 HI0933-like protein SPy_1867 PF01791 DeoC/LacD family aldolase SPy_1868 PF01773 Na+ dependent nucleoside transporter N-terminus SPy_1868 PF07662 Na+ dependent nucleoside transporter C-terminus SPy_1869 PF01048 Phosphorylase superfamily SPy_1870 PF00392 Bacterial regulatory proteins, gntR family SPy_1871 PF00253 Ribosomal protein S14p/S29e SPy_1872 PF00814 Glycoprotease family SPy_1873 PF13508 Acetyltransferase (GNAT) domain SPy_1874 PF00814 Glycoprotease family SPy_1875 PF07288 Protein of unknown function (DUF1447) SPy_1876 PF00753 Metallo-beta-lactamase superfamily SPy_1876 PF07521 RNA-metabolising metallo-beta-lactamase SPy_1877 PF00120 Glutamine synthetase, catalytic domain SPy_1877 PF03951 Glutamine synthetase, beta-Grasp domain SPy_1878 PF13411 MerR HTH family regulatory protein SPy_1879 PF06081 SPy_1879 SPy_1881 PF00162 Phosphoglycerate kinase SPy_1882 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SPy_1884 PF01145 SPFH domain / Band 7 family SPy_1885 PF02734 DAK2 domain SPy_1885 PF13684 Dihydroxyacetone kinase family SPy_1886 PF03780 SPy_1886 SPy_1888 PF00830 Ribosomal L28 family SPy_1889 PF01116 Fructose-bisphosphate aldolase class-II SPy_1892 PF12146 Putative lysophospholipase SPy_1894 PF00117 Glutamine amidotransferase class-I SPy_1894 PF06418 CTP synthase N-terminus SPy_1895 PF05066 HB1, ASXL, restriction endonuclease HTH domain SPy_1896 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SPy_1896 PF05697 Bacterial trigger factor protein (TF) SPy_1896 PF05698 Bacterial trigger factor protein (TF) C-terminus SPy_1897 PF00924 Mechanosensitive ion channel SPy_1898 PF04260 Protein of unknown function (DUF436) SPy_1899 PF07155 ECF-type riboflavin transporter, S component SPy_1900 PF08543 Phosphomethylpyrimidine kinase SPy_1901 PF01416 tRNA pseudouridine synthase SPy_1903 PF02595 Glycerate kinase family SPy_1904 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SPy_1904 PF04851 Type III restriction enzyme, res subunit SPy_1904 PF12008 Type I restriction and modification enzyme - subunit R C terminal SPy_1905 PF01420 Type I restriction modification DNA specificity domain SPy_1906 PF02384 N-6 DNA Methylase SPy_1906 PF12161 HsdM N-terminal domain SPy_1908 PF00072 Response regulator receiver domain SPy_1908 PF00196 Bacterial regulatory proteins, luxR family SPy_1911 PF02687 SPy_1911 SPy_1912 PF00005 ABC transporter SPy_1913 PF00005 ABC transporter SPy_1914 PF13575 SPy_1914 SPy_1915 PF04604 Type-A lantibiotic SPy_1916 PF00232 Glycosyl hydrolase family 1 SPy_1917 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_1917 PF02378 Phosphotransferase system, EIIC SPy_1918 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPy_1919 PF01791 DeoC/LacD family aldolase SPy_1921 PF00294 pfkB family carbohydrate kinase SPy_1922 PF02502 Ribose/Galactose Isomerase SPy_1923 PF02502 Ribose/Galactose Isomerase SPy_1924 PF00455 SPy_1924 SPy_1924 PF08220 DeoR-like helix-turn-helix domain SPy_1927 PF05016 Plasmid stabilisation system protein SPy_1931 PF00380 Ribosomal protein S9/S16 SPy_1932 PF00572 Ribosomal protein L13 SPy_1934 PF01381 Helix-turn-helix SPy_1936 PF02645 Uncharacterised protein, DegV family COG1307 SPy_1937 PF05991 SPy_1937 SPy_1938 PF00588 SpoU rRNA Methylase family SPy_1938 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPy_1940 PF00636 Ribonuclease III domain SPy_1941 PF01406 tRNA synthetases class I (C) catalytic domain SPy_1941 PF09190 DALR domain SPy_1944 PF00132 Bacterial transferase hexapeptide (six repeats) SPy_1945 PF07179 SPy_1945 SPy_1946 PF00013 KH domain SPy_1946 PF00575 S1 RNA binding domain SPy_1946 PF01138 3' exoribonuclease family, domain 1 SPy_1946 PF03725 3' exoribonuclease family, domain 2 SPy_1946 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SPy_1947 PF00923 Transaldolase SPy_1949 PF03611 SPy_1949 SPy_1950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_1952 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPy_1952 PF00874 PRD domain SPy_1955 PF00312 Ribosomal protein S15 SPy_1958 PF01327 Polypeptide deformylase SPy_1959 PF03358 NADPH-dependent FMN reductase SPy_1960 PF01047 MarR family SPy_1961 PF00929 Exonuclease SPy_1961 PF02811 PHP domain SPy_1961 PF07733 Bacterial DNA polymerase III alpha subunit SPy_1961 PF11490 SPy_1961 SPy_1961 PF14480 SPy_1961 SPy_1961 PF14579 Helix-hairpin-helix motif SPy_1962 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPy_1962 PF03129 Anticodon binding domain SPy_1962 PF04073 Aminoacyl-tRNA editing domain SPy_1963 PF02163 Peptidase family M50 SPy_1963 PF13180 PDZ domain SPy_1964 PF01148 Cytidylyltransferase family SPy_1965 PF01255 Putative undecaprenyl diphosphate synthase SPy_1968 PF02699 Preprotein translocase subunit SPy_1971 PF00085 Thioredoxin SPy_1972 PF00128 Alpha amylase, catalytic domain SPy_1972 PF00746 SPy_1972 SPy_1972 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPy_1972 PF03714 Bacterial pullanase-associated domain SPy_1973 PF00128 Alpha amylase, catalytic domain SPy_1973 PF11941 Domain of unknown function (DUF3459) SPy_1976 PF00005 ABC transporter SPy_1976 PF03459 TOBE domain SPy_1978 PF13556 PucR C-terminal helix-turn-helix domain SPy_1979 PF02821 Staphylokinase/Streptokinase family SPy_1980 PF02580 D-Tyr-tRNA(Tyr) deacylase SPy_1981 PF02824 TGS domain SPy_1981 PF04607 Region found in RelA / SpoT proteins SPy_1981 PF13291 ACT domain SPy_1981 PF13328 HD domain SPy_1983 PF00746 SPy_1983 SPy_1983 PF01391 Collagen triple helix repeat (20 copies) SPy_1984 PF07972 NrdI Flavodoxin like SPy_1985 PF03372 Endonuclease/Exonuclease/phosphatase family SPy_1986 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPy_1986 PF00367 phosphotransferase system, EIIB SPy_1986 PF02378 Phosphotransferase system, EIIC SPy_1987 PF04452 RNA methyltransferase SPy_1988 PF06325 Ribosomal protein L11 methyltransferase (PrmA) SPy_1989 PF11217 Protein of unknown function (DUF3013) SPy_1990 PF00425 chorismate binding enzyme SPy_1990 PF01063 Aminotransferase class IV SPy_1991 PF00117 Glutamine amidotransferase class-I SPy_1992 PF00004 ATPase family associated with various cellular activities (AAA) SPy_1992 PF12002 MgsA AAA+ ATPase C terminal SPy_1992 PF16193 SPy_1992 SPy_1994 PF13673 Acetyltransferase (GNAT) domain SPy_1995 PF00005 ABC transporter SPy_1998 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPy_1998 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPy_2000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPy_2001 PF00528 Binding-protein-dependent transport system inner membrane component SPy_2002 PF00528 Binding-protein-dependent transport system inner membrane component SPy_2003 PF00005 ABC transporter SPy_2004 PF00005 ABC transporter SPy_2005 PF05532 CsbD-like SPy_2006 PF04270 Streptococcal histidine triad protein SPy_2007 PF01297 Periplasmic solute binding protein family SPy_2009 PF04650 SPy_2009 SPy_2010 PF00082 Subtilase family SPy_2010 PF02225 PA domain SPy_2010 PF06280 Fn3-like domain (DUF1034) SPy_2010 PF13585 C-terminal domain of CHU protein family SPy_2013 PF01609 Transposase DDE domain SPy_2013 PF05598 SPy_2013 SPy_2016 PF03482 SPy_2016 SPy_2018 PF00746 SPy_2018 SPy_2018 PF04650 SPy_2018 SPy_2019 PF05043 Mga helix-turn-helix domain SPy_2019 PF08270 SPy_2019 SPy_2019 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPy_2025 PF05257 CHAP domain SPy_2026 PF00512 His Kinase A (phospho-acceptor) domain SPy_2026 PF00672 HAMP domain SPy_2026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_2027 PF00072 Response regulator receiver domain SPy_2027 PF00486 Transcriptional regulatory protein, C terminal SPy_2029 PF02687 SPy_2029 SPy_2029 PF12704 MacB-like periplasmic core domain SPy_2031 PF00005 ABC transporter SPy_2032 PF16576 SPy_2032 SPy_2034 PF14131 Domain of unknown function (DUF4298) SPy_2037 PF13145 PPIC-type PPIASE domain SPy_2038 PF13734 Spi protease inhibitor SPy_2039 PF01640 Peptidase C10 family SPy_2039 PF13734 Spi protease inhibitor SPy_2043 PF01223 DNA/RNA non-specific endonuclease SPy_2045 PF04608 Phosphatidylglycerophosphatase A SPy_2047 PF00465 Iron-containing alcohol dehydrogenase SPy_2048 PF00923 Transaldolase SPy_2049 PF01228 Glycine radical SPy_2049 PF02901 Pyruvate formate lyase SPy_2050 PF02378 Phosphotransferase system, EIIC SPy_2051 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPy_2052 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPy_2053 PF04198 Putative sugar-binding domain SPy_2054 PF00455 SPy_2054 SPy_2054 PF08220 DeoR-like helix-turn-helix domain SPy_2055 PF04055 Radical SAM superfamily SPy_2055 PF13353 4Fe-4S single cluster domain SPy_2058 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SPy_2059 PF00905 Penicillin binding protein transpeptidase domain SPy_2059 PF00912 Transglycosylase SPy_2063 PF00849 RNA pseudouridylate synthase SPy_2066 PF03577 SPy_2066 SPy_2070 PF00118 TCP-1/cpn60 chaperonin family SPy_2072 PF00166 Chaperonin 10 Kd subunit SPy_2073 PF00004 ATPase family associated with various cellular activities (AAA) SPy_2073 PF02861 Clp amino terminal domain SPy_2073 PF07724 AAA domain (Cdc48 subfamily) SPy_2073 PF10431 C-terminal, D2-small domain, of ClpB protein SPy_2074 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) SPy_2077 PF00313 'Cold-shock' DNA-binding domain SPy_2079 PF00578 AhpC/TSA family SPy_2079 PF10417 C-terminal domain of 1-Cys peroxiredoxin SPy_2080 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPy_2080 PF13192 Thioredoxin domain SPy_2081 PF01979 Amidohydrolase family SPy_2082 PF01175 Urocanase SPy_2083 PF02971 Formiminotransferase domain SPy_2083 PF07837 Formiminotransferase domain, N-terminal subdomain SPy_2084 PF04961 Formiminotransferase-cyclodeaminase SPy_2085 PF01268 Formate--tetrahydrofolate ligase SPy_2087 PF05962 HutD SPy_2088 PF13520 Amino acid permease SPy_2089 PF00221 Aromatic amino acid lyase SPy_2090 PF00491 Arginase family SPy_2091 PF03704 Bacterial transcriptional activator domain SPy_2091 PF13191 AAA ATPase domain SPy_2092 PF00318 Ribosomal protein S2 SPy_2093 PF00889 Elongation factor TS SPy_2095 PF01431 Peptidase family M13 SPy_2095 PF05649 Peptidase family M13 SPy_2096 PF00128 Alpha amylase, catalytic domain SPy_2096 PF11941 Domain of unknown function (DUF3459) SPy_2097 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPy_2097 PF00367 phosphotransferase system, EIIB SPy_2097 PF02378 Phosphotransferase system, EIIC SPy_2099 PF00392 Bacterial regulatory proteins, gntR family SPy_2099 PF07702 UTRA domain SPy_2103 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPy_2104 PF03883 SPy_2104 SPy_2105 PF13353 4Fe-4S single cluster domain SPy_2106 PF13302 Acetyltransferase (GNAT) domain SPy_2107 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPy_2110 PF03477 ATP cone domain SPy_2110 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPy_2111 PF09852 SPy_2111 SPy_2112 PF06949 SPy_2112 SPy_2113 PF03652 Uncharacterised protein family (UPF0081) SPy_2114 PF06135 SPy_2114 SPy_2115 PF03960 ArsC family SPy_2116 PF00154 recA bacterial DNA recombination protein SPy_2117 PF00994 Probable molybdopterin binding domain SPy_2117 PF02464 Competence-damaged protein SPy_2118 PF03352 Methyladenine glycosylase SPy_2119 PF01330 RuvA N terminal domain SPy_2119 PF07499 RuvA, C-terminal domain SPy_2119 PF14520 Helix-hairpin-helix domain SPy_2120 PF07690 Major Facilitator Superfamily SPy_2121 PF01119 DNA mismatch repair protein, C-terminal domain SPy_2121 PF08676 MutL C terminal dimerisation domain SPy_2121 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPy_2122 PF00589 Phage integrase family SPy_2122 PF14659 Phage integrase, N-terminal SAM-like domain SPy_2125 PF00717 Peptidase S24-like SPy_2125 PF01381 Helix-turn-helix SPy_2126 PF01381 Helix-turn-helix SPy_2127 PF02498 SPy_2127 SPy_2128 PF02498 SPy_2128 SPy_2135 PF08708 Primase C terminal 1 (PriCT-1) SPy_2136 PF03288 Poxvirus D5 protein-like SPy_2136 PF08706 SPy_2136 SPy_2144 PF07374 SPy_2144 SPy_2145 PF07374 SPy_2145 SPy_2148 PF00488 MutS domain V SPy_2148 PF01624 MutS domain I SPy_2148 PF05188 MutS domain II SPy_2148 PF05190 MutS family domain IV SPy_2148 PF05192 MutS domain III SPy_2149 PF06133 Protein of unknown function (DUF964) SPy_2150 PF01316 Arginine repressor, DNA binding domain SPy_2150 PF02863 Arginine repressor, C-terminal domain SPy_2151 PF00750 tRNA synthetases class I (R) SPy_2151 PF03485 Arginyl tRNA synthetase N terminal domain SPy_2151 PF05746 DALR anticodon binding domain SPy_2152 PF08951 Enterocin A Immunity SPy_2153 PF02588 SPy_2153 SPy_2153 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPy_2154 PF02588 SPy_2154 SPy_2154 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPy_2155 PF02588 SPy_2155 SPy_2155 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPy_2156 PF00152 tRNA synthetases class II (D, K and N) SPy_2156 PF01336 OB-fold nucleic acid binding domain SPy_2156 PF02938 GAD domain SPy_2157 PF03129 Anticodon binding domain SPy_2157 PF13393 Histidyl-tRNA synthetase SPy_2159 PF01783 Ribosomal L32p protein family SPy_2160 PF00471 Ribosomal protein L33 SPy_2162 PF03596 SPy_2162 SPy_2163 PF01022 Bacterial regulatory protein, arsR family SPy_2165 PF00005 ABC transporter SPy_2169 PF04018 SPy_2169 SPy_2170 PF00293 NUDIX domain SPy_2172 PF03551 Transcriptional regulator PadR-like family SPy_2173 PF08006 SPy_2173 SPy_2174 PF13349 SPy_2174 SPy_2176 PF12051 SPy_2176 SPy_2177 PF00440 Bacterial regulatory proteins, tetR family SPy_2178 PF00163 Ribosomal protein S4/S9 N-terminal domain SPy_2178 PF01479 S4 domain SPy_2180 PF01609 Transposase DDE domain SPy_2180 PF13808 SPy_2180 SPy_2181 PF06257 Protein of unknown function (DUF1021) SPy_2182 PF00772 DnaB-like helicase N terminal domain SPy_2182 PF03796 DnaB-like helicase C terminal domain SPy_2183 PF01281 Ribosomal protein L9, N-terminal domain SPy_2183 PF03948 Ribosomal protein L9, C-terminal domain SPy_2184 PF01368 DHH family SPy_2184 PF02272 DHHA1 domain SPy_2185 PF01134 Glucose inhibited division protein A SPy_2185 PF13932 GidA associated domain 3 SPy_2186 PF00293 NUDIX domain SPy_2188 PF03054 tRNA methyl transferase SPy_2189 PF01842 ACT domain SPy_2189 PF03315 Serine dehydratase beta chain SPy_2190 PF03313 SPy_2190 SPy_2191 PF01464 Transglycosylase SLT domain SPy_2193 PF02361 Cobalt transport protein SPy_2194 PF00005 ABC transporter SPy_2195 PF00005 ABC transporter SPy_2196 PF01066 CDP-alcohol phosphatidyltransferase SPy_2197 PF13413 Helix-turn-helix domain SPy_2198 PF00675 Insulinase (Peptidase family M16) SPy_2198 PF05193 Peptidase M16 inactive domain SPy_2199 PF05193 Peptidase M16 inactive domain SPy_2200 PF00535 Glycosyl transferase family 2 SPy_2201 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPy_2201 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SPy_2201 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPy_2202 PF00483 Nucleotidyl transferase SPy_2203 PF13275 S4 domain SPy_2204 PF02463 RecF/RecN/SMC N terminal domain SPy_2205 PF06800 SPy_2205 SPy_2206 PF00478 IMP dehydrogenase / GMP reductase domain SPy_2206 PF00571 CBS domain SPy_2207 PF00579 tRNA synthetases class I (W and Y) SPy_2209 PF02588 SPy_2209 SPy_2209 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPy_2210 PF00005 ABC transporter SPy_2210 PF12848 ABC transporter SPy_2211 PF09586 SPy_2211 SPy_2215 PF02590 Predicted SPOUT methyltransferase SPy_2216 PF13180 PDZ domain SPy_2216 PF13365 Trypsin-like peptidase domain SPy_2217 PF02195 ParB-like nuclease domain SPy_2217 PF08535 KorB domain