M28_RS00005 PF00308 Bacterial dnaA protein M28_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix M28_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M28_RS00010 PF02767 DNA polymerase III beta subunit, central domain M28_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M28_RS00015 PF06107 M28_RS00015 M28_RS00020 PF01926 50S ribosome-binding GTPase M28_RS00020 PF06071 Protein of unknown function (DUF933) M28_RS00025 PF01195 Peptidyl-tRNA hydrolase M28_RS00030 PF00270 DEAD/DEAH box helicase M28_RS00030 PF00271 Helicase conserved C-terminal domain M28_RS00030 PF02559 CarD-like/TRCF domain M28_RS00030 PF03461 TRCF domain M28_RS00035 PF01479 S4 domain M28_RS00040 PF04977 Septum formation initiator M28_RS00045 PF13354 Beta-lactamase enzyme family M28_RS00050 PF01171 PP-loop family M28_RS00055 PF00156 Phosphoribosyl transferase domain M28_RS00060 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS00060 PF01434 Peptidase family M41 M28_RS00060 PF06480 FtsH Extracellular M28_RS00065 PF13520 Amino acid permease M28_RS00240 PF05257 CHAP domain M28_RS00245 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M28_RS00245 PF14572 Phosphoribosyl synthetase-associated domain M28_RS00250 PF02565 Recombination protein O C terminal M28_RS00250 PF11967 Recombination protein O N terminal M28_RS00255 PF02504 Fatty acid synthesis protein M28_RS00260 PF00550 Phosphopantetheine attachment site M28_RS00265 PF01259 SAICAR synthetase M28_RS00270 PF02769 AIR synthase related protein, C-terminal domain M28_RS00270 PF13507 CobB/CobQ-like glutamine amidotransferase domain M28_RS00275 PF00156 Phosphoribosyl transferase domain M28_RS00275 PF13537 Glutamine amidotransferase domain M28_RS00280 PF00586 AIR synthase related protein, N-terminal domain M28_RS00280 PF02769 AIR synthase related protein, C-terminal domain M28_RS00285 PF00551 Formyl transferase M28_RS00290 PF01808 AICARFT/IMPCHase bienzyme M28_RS00290 PF02142 MGS-like domain M28_RS00295 PF05257 CHAP domain M28_RS00295 PF08460 Bacterial SH3 domain M28_RS00300 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M28_RS00300 PF02843 Phosphoribosylglycinamide synthetase, C domain M28_RS00300 PF02844 Phosphoribosylglycinamide synthetase, N domain M28_RS00305 PF00731 AIR carboxylase M28_RS00310 PF02222 ATP-grasp domain M28_RS00320 PF00206 Lyase M28_RS00320 PF10397 Adenylosuccinate lyase C-terminus M28_RS00325 PF01381 Helix-turn-helix M28_RS00330 PF05491 Holliday junction DNA helicase ruvB C-terminus M28_RS00330 PF05496 Holliday junction DNA helicase ruvB N-terminus M28_RS00335 PF01451 Low molecular weight phosphotyrosine protein phosphatase M28_RS00340 PF02493 MORN repeat M28_RS00345 PF01757 M28_RS00345 M28_RS00350 PF00171 Aldehyde dehydrogenase family M28_RS00350 PF00465 Iron-containing alcohol dehydrogenase M28_RS00355 PF00107 Zinc-binding dehydrogenase M28_RS00355 PF08240 Alcohol dehydrogenase GroES-like domain M28_RS00360 PF01554 MatE M28_RS00365 PF00338 Ribosomal protein S10p/S20e M28_RS00370 PF00297 Ribosomal protein L3 M28_RS00375 PF00573 Ribosomal protein L4/L1 family M28_RS00380 PF00276 Ribosomal protein L23 M28_RS00385 PF00181 Ribosomal Proteins L2, RNA binding domain M28_RS00385 PF03947 Ribosomal Proteins L2, C-terminal domain M28_RS00390 PF00203 Ribosomal protein S19 M28_RS00395 PF00237 Ribosomal protein L22p/L17e M28_RS00400 PF00189 Ribosomal protein S3, C-terminal domain M28_RS00400 PF07650 KH domain M28_RS00405 PF00252 Ribosomal protein L16p/L10e M28_RS00410 PF00831 Ribosomal L29 protein M28_RS00415 PF00366 Ribosomal protein S17 M28_RS00420 PF00238 Ribosomal protein L14p/L23e M28_RS00425 PF00467 KOW motif M28_RS00425 PF17136 M28_RS00425 M28_RS00430 PF00281 Ribosomal protein L5 M28_RS00430 PF00673 ribosomal L5P family C-terminus M28_RS00435 PF00253 Ribosomal protein S14p/S29e M28_RS00440 PF00410 Ribosomal protein S8 M28_RS00445 PF00347 Ribosomal protein L6 M28_RS00450 PF00861 Ribosomal L18p/L5e family M28_RS00455 PF00333 Ribosomal protein S5, N-terminal domain M28_RS00455 PF03719 Ribosomal protein S5, C-terminal domain M28_RS00460 PF00327 Ribosomal protein L30p/L7e M28_RS00465 PF00828 Ribosomal protein L18e/L15 M28_RS00470 PF00344 SecY translocase M28_RS00475 PF00406 Adenylate kinase M28_RS00480 PF01176 Translation initiation factor 1A / IF-1 M28_RS00485 PF00416 Ribosomal protein S13/S18 M28_RS00490 PF00411 Ribosomal protein S11 M28_RS00495 PF01000 RNA polymerase Rpb3/RpoA insert domain M28_RS00495 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M28_RS00495 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M28_RS00500 PF01196 Ribosomal protein L17 M28_RS00590 PF00288 GHMP kinases N terminal domain M28_RS00595 PF08544 GHMP kinases C terminal M28_RS00600 PF01047 MarR family M28_RS00605 PF00005 ABC transporter M28_RS00610 PF00950 M28_RS00610 M28_RS00615 PF01230 HIT domain M28_RS00620 PF00579 tRNA synthetases class I (W and Y) M28_RS00620 PF01479 S4 domain M28_RS00625 PF00905 Penicillin binding protein transpeptidase domain M28_RS00625 PF00912 Transglycosylase M28_RS00630 PF00562 RNA polymerase Rpb2, domain 6 M28_RS00630 PF04560 RNA polymerase Rpb2, domain 7 M28_RS00630 PF04561 RNA polymerase Rpb2, domain 2 M28_RS00630 PF04563 RNA polymerase beta subunit M28_RS00630 PF04565 RNA polymerase Rpb2, domain 3 M28_RS00630 PF10385 RNA polymerase beta subunit external 1 domain M28_RS00635 PF00623 RNA polymerase Rpb1, domain 2 M28_RS00635 PF04983 RNA polymerase Rpb1, domain 3 M28_RS00635 PF04997 RNA polymerase Rpb1, domain 1 M28_RS00635 PF04998 RNA polymerase Rpb1, domain 5 M28_RS00635 PF05000 RNA polymerase Rpb1, domain 4 M28_RS00640 PF06279 M28_RS00640 M28_RS00645 PF00437 Type II/IV secretion system protein M28_RS00650 PF00482 Type II secretion system (T2SS), protein F M28_RS00655 PF07963 Prokaryotic N-terminal methylation motif M28_RS00665 PF11773 M28_RS00665 M28_RS00670 PF15980 M28_RS00670 M28_RS00680 PF02384 N-6 DNA Methylase M28_RS00685 PF00871 Acetokinase family M28_RS00695 PF03807 NADP oxidoreductase coenzyme F420-dependent M28_RS00695 PF14748 Pyrroline-5-carboxylate reductase dimerisation M28_RS00700 PF05343 M42 glutamyl aminopeptidase M28_RS00705 PF15513 Domain of unknown function (DUF4651) M28_RS00710 PF00085 Thioredoxin M28_RS00715 PF01588 Putative tRNA binding domain M28_RS00715 PF14794 Domain of unknown function (DUF4479) M28_RS00720 PF00436 Single-strand binding protein family M28_RS00725 PF01712 Deoxynucleoside kinase M28_RS00730 PF01207 Dihydrouridine synthase (Dus) M28_RS00735 PF01430 Hsp33 protein M28_RS00740 PF05043 Mga helix-turn-helix domain M28_RS00740 PF08270 M28_RS00740 M28_RS00740 PF08280 M protein trans-acting positive regulator (MGA) HTH domain M28_RS00745 PF02986 Fibronectin binding repeat M28_RS00745 PF08341 Fibronectin-binding protein signal sequence M28_RS00750 PF04203 Sortase family M28_RS00755 PF05738 Cna protein B-type domain M28_RS00755 PF08341 Fibronectin-binding protein signal sequence M28_RS00760 PF10502 Signal peptidase, peptidase S26 M28_RS00765 PF12892 T surface-antigen of pili M28_RS00770 PF04203 Sortase family M28_RS00780 PF12833 Helix-turn-helix domain M28_RS00785 PF02986 Fibronectin binding repeat M28_RS00785 PF05738 Cna protein B-type domain M28_RS00785 PF10425 C-terminus of bacterial fibrinogen-binding adhesin M28_RS00795 PF02667 M28_RS00795 M28_RS00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M28_RS00800 PF03466 LysR substrate binding domain M28_RS00805 PF00108 Thiolase, N-terminal domain M28_RS00805 PF02803 Thiolase, C-terminal domain M28_RS00810 PF01144 Coenzyme A transferase M28_RS00815 PF01144 Coenzyme A transferase M28_RS00820 PF08348 M28_RS00820 M28_RS00820 PF13309 M28_RS00820 M28_RS00825 PF01042 Endoribonuclease L-PSP M28_RS00830 PF13303 M28_RS00830 M28_RS00840 PF01496 V-type ATPase 116kDa subunit family M28_RS00845 PF00137 ATP synthase subunit C M28_RS00855 PF01992 ATP synthase (C/AC39) subunit M28_RS00860 PF01990 ATP synthase (F/14-kDa) subunit M28_RS00865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS00865 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS00865 PF16886 M28_RS00865 M28_RS00870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS00870 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS00875 PF01813 ATP synthase subunit D M28_RS00880 PF05816 M28_RS00880 M28_RS00890 PF00709 Adenylosuccinate synthetase M28_RS00895 PF02608 Basic membrane protein M28_RS00900 PF00467 KOW motif M28_RS00900 PF02357 Transcription termination factor nusG M28_RS00905 PF07461 Nicotine adenine dinucleotide glycohydrolase (NADase) M28_RS00910 PF16718 M28_RS00910 M28_RS00915 PF01289 Thiol-activated cytolysin M28_RS00930 PF01053 Cys/Met metabolism PLP-dependent enzyme M28_RS00935 PF00133 tRNA synthetases class I (I, L, M and V) M28_RS00935 PF08264 Anticodon-binding domain of tRNA M28_RS00935 PF09334 tRNA synthetases class I (M) M28_RS00935 PF13603 Leucyl-tRNA synthetase, Domain 2 M28_RS00940 PF03611 M28_RS00940 M28_RS00945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS00950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS00955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M28_RS00960 PF01261 Xylose isomerase-like TIM barrel M28_RS00965 PF00596 Class II Aldolase and Adducin N-terminal domain M28_RS00970 PF00874 PRD domain M28_RS00970 PF08279 HTH domain M28_RS00975 PF13483 Beta-lactamase superfamily domain M28_RS00980 PF00005 ABC transporter M28_RS00980 PF00571 CBS domain M28_RS00985 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS00985 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M28_RS00990 PF00476 DNA polymerase family A M28_RS00990 PF01367 5'-3' exonuclease, C-terminal SAM fold M28_RS00990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M28_RS00995 PF13380 CoA binding domain M28_RS01000 PF01475 Ferric uptake regulator family M28_RS01010 PF11922 M28_RS01010 M28_RS01015 PF02195 ParB-like nuclease domain M28_RS01025 PF13333 M28_RS01025 M28_RS01030 PF00665 Integrase core domain M28_RS01035 PF13276 M28_RS01035 M28_RS01040 PF01527 Transposase M28_RS01045 PF07158 M28_RS01045 M28_RS01050 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M28_RS01050 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M28_RS01055 PF13276 M28_RS01055 M28_RS01055 PF13333 M28_RS01055 M28_RS01065 PF06161 M28_RS01065 M28_RS01070 PF01702 Queuine tRNA-ribosyltransferase M28_RS01075 PF02632 BioY family M28_RS01080 PF12706 Beta-lactamase superfamily domain M28_RS01085 PF14437 M28_RS01085 M28_RS01090 PF01841 Transglutaminase-like superfamily M28_RS01095 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS01095 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS01100 PF00342 Phosphoglucose isomerase M28_RS01105 PF05043 Mga helix-turn-helix domain M28_RS01105 PF08270 M28_RS01105 M28_RS01105 PF08280 M protein trans-acting positive regulator (MGA) HTH domain M28_RS01110 PF01694 Rhomboid family M28_RS01115 PF00483 Nucleotidyl transferase M28_RS01120 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M28_RS01120 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M28_RS01125 PF12802 MarR family M28_RS01130 PF00005 ABC transporter M28_RS01130 PF00664 ABC transporter transmembrane region M28_RS01135 PF00005 ABC transporter M28_RS01135 PF00664 ABC transporter transmembrane region M28_RS01140 PF02677 M28_RS01140 M28_RS01145 PF00692 dUTPase M28_RS01150 PF13481 AAA domain M28_RS01150 PF13541 Subunit ChlI of Mg-chelatase M28_RS01155 PF00484 Carbonic anhydrase M28_RS01160 PF01987 Mitochondrial biogenesis AIM24 M28_RS01165 PF00749 tRNA synthetases class I (E and Q), catalytic domain M28_RS01170 PF14501 GHKL domain M28_RS01175 PF14501 GHKL domain M28_RS01180 PF00072 Response regulator receiver domain M28_RS01180 PF04397 LytTr DNA-binding domain M28_RS01185 PF00825 Ribonuclease P M28_RS01190 PF02096 60Kd inner membrane protein M28_RS01195 PF01424 R3H domain M28_RS01195 PF13083 KH domain M28_RS01195 PF14804 Jag N-terminus M28_RS01200 PF00468 Ribosomal protein L34 M28_RS01205 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M28_RS01210 PF01547 Bacterial extracellular solute-binding protein M28_RS01215 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01220 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01225 PF04854 M28_RS01225 M28_RS01230 PF00701 Dihydrodipicolinate synthetase family M28_RS01235 PF00480 ROK family M28_RS01240 PF01380 SIS domain M28_RS01240 PF01418 Helix-turn-helix domain, rpiR family M28_RS01245 PF01026 TatD related DNase M28_RS01250 PF13331 M28_RS01250 M28_RS01250 PF13662 Toprim domain M28_RS01255 PF00398 Ribosomal RNA adenine dimethylase M28_RS01260 PF03193 Protein of unknown function, DUF258 M28_RS01260 PF16745 M28_RS01260 M28_RS01265 PF00834 Ribulose-phosphate 3 epimerase family M28_RS01270 PF04263 Thiamin pyrophosphokinase, catalytic domain M28_RS01270 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain M28_RS01275 PF02646 M28_RS01275 M28_RS01280 PF01966 HD domain M28_RS01285 PF00156 Phosphoribosyl transferase domain M28_RS01285 PF09182 Bacterial purine repressor, N-terminal M28_RS01295 PF00164 Ribosomal protein S12/S23 M28_RS01300 PF00177 Ribosomal protein S7p/S5e M28_RS01305 PF00009 Elongation factor Tu GTP binding domain M28_RS01305 PF00679 Elongation factor G C-terminus M28_RS01305 PF03144 Elongation factor Tu domain 2 M28_RS01305 PF03764 Elongation factor G, domain IV M28_RS01305 PF14492 Elongation Factor G, domain II M28_RS01310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M28_RS01310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M28_RS01315 PF00005 ABC transporter M28_RS01320 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS01320 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01330 PF02673 M28_RS01330 M28_RS01335 PF05389 Negative regulator of genetic competence (MecA) M28_RS01340 PF00953 Glycosyl transferase family 4 M28_RS01345 PF00005 ABC transporter M28_RS01350 PF01458 Uncharacterized protein family (UPF0051) M28_RS01355 PF00266 Aminotransferase class-V M28_RS01360 PF01592 NifU-like N terminal domain M28_RS01365 PF01458 Uncharacterized protein family (UPF0051) M28_RS01370 PF00768 D-alanyl-D-alanine carboxypeptidase M28_RS01370 PF01351 Ribonuclease HII M28_RS01375 PF00768 D-alanyl-D-alanine carboxypeptidase M28_RS01375 PF07943 Penicillin-binding protein 5, C-terminal domain M28_RS01380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M28_RS01385 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01390 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01390 PF12911 M28_RS01390 M28_RS01395 PF00005 ABC transporter M28_RS01395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M28_RS01400 PF00005 ABC transporter M28_RS01400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M28_RS01440 PF13419 Haloacid dehalogenase-like hydrolase M28_RS01445 PF01926 50S ribosome-binding GTPase M28_RS01450 PF01985 CRS1 / YhbY (CRM) domain M28_RS01455 PF01467 Cytidylyltransferase M28_RS01460 PF01966 HD domain M28_RS01465 PF02410 Oligomerisation domain M28_RS01470 PF13649 Methyltransferase domain M28_RS01475 PF05636 HIGH Nucleotidyl Transferase M28_RS01480 PF01709 Transcriptional regulator M28_RS01485 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS01490 PF03180 NLPA lipoprotein M28_RS01495 PF00005 ABC transporter M28_RS01495 PF09383 NIL domain M28_RS01500 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01505 PF05525 M28_RS01505 M28_RS01510 PF00375 Sodium:dicarboxylate symporter family M28_RS01515 PF02254 TrkA-N domain M28_RS01520 PF02386 Cation transport protein M28_RS01525 PF02527 rRNA small subunit methyltransferase G M28_RS01530 PF04011 LemA family M28_RS01535 PF01435 Peptidase family M48 M28_RS01540 PF02620 M28_RS01540 M28_RS01545 PF00072 Response regulator receiver domain M28_RS01545 PF00486 Transcriptional regulatory protein, C terminal M28_RS01550 PF00512 His Kinase A (phospho-acceptor) domain M28_RS01550 PF00672 HAMP domain M28_RS01550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS01555 PF03477 ATP cone domain M28_RS01560 PF07261 Replication initiation and membrane attachment M28_RS01565 PF01695 IstB-like ATP binding protein M28_RS01565 PF07319 Primosomal protein DnaI N-terminus M28_RS01570 PF01926 50S ribosome-binding GTPase M28_RS01570 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M28_RS01575 PF00176 SNF2 family N-terminal domain M28_RS01575 PF00271 Helicase conserved C-terminal domain M28_RS01575 PF04434 M28_RS01575 M28_RS01575 PF08455 M28_RS01575 M28_RS01585 PF01225 Mur ligase family, catalytic domain M28_RS01585 PF02875 Mur ligase family, glutamate ligase domain M28_RS01585 PF08245 Mur ligase middle domain M28_RS01590 PF13673 Acetyltransferase (GNAT) domain M28_RS01595 PF02618 YceG-like family M28_RS01600 PF01272 Transcription elongation factor, GreA/GreB, C-term M28_RS01600 PF03449 Transcription elongation factor, N-terminal M28_RS01605 PF02096 60Kd inner membrane protein M28_RS01610 PF00708 Acylphosphatase M28_RS01615 PF00588 SpoU rRNA Methylase family M28_RS01615 PF08032 RNA 2'-O ribose methyltransferase substrate binding M28_RS01625 PF01027 Inhibitor of apoptosis-promoting Bax1 M28_RS01630 PF03672 M28_RS01630 M28_RS01635 PF01177 Asp/Glu/Hydantoin racemase M28_RS01640 PF01725 Ham1 family M28_RS01645 PF12850 Calcineurin-like phosphoesterase superfamily domain M28_RS01650 PF00571 CBS domain M28_RS01655 PF00589 Phage integrase family M28_RS01660 PF02616 ScpA/B protein M28_RS01665 PF04079 Putative transcriptional regulators (Ypuh-like) M28_RS01670 PF00849 RNA pseudouridylate synthase M28_RS01670 PF01479 S4 domain M28_RS01675 PF01809 M28_RS01675 M28_RS01680 PF00588 SpoU rRNA Methylase family M28_RS01685 PF12822 Protein of unknown function (DUF3816) M28_RS01690 PF01569 PAP2 superfamily M28_RS01695 PF04055 Radical SAM superfamily M28_RS01695 PF16199 M28_RS01695 M28_RS01700 PF06962 Putative rRNA methylase M28_RS01705 PF00571 CBS domain M28_RS01705 PF01595 M28_RS01705 M28_RS01705 PF03471 Transporter associated domain M28_RS01710 PF04055 Radical SAM superfamily M28_RS01710 PF13353 4Fe-4S single cluster domain M28_RS01715 PF01368 DHH family M28_RS01715 PF02833 DHHA2 domain M28_RS01720 PF08820 M28_RS01720 M28_RS01725 PF01032 FecCD transport family M28_RS01730 PF01032 FecCD transport family M28_RS01735 PF01497 Periplasmic binding protein M28_RS01740 PF00005 ABC transporter M28_RS01745 PF02875 Mur ligase family, glutamate ligase domain M28_RS01745 PF08245 Mur ligase middle domain M28_RS01750 PF01943 M28_RS01750 M28_RS01750 PF14667 Polysaccharide biosynthesis C-terminal domain M28_RS01755 PF14681 Uracil phosphoribosyltransferase M28_RS01760 PF00574 Clp protease M28_RS01765 PF09902 M28_RS01765 M28_RS01770 PF02223 Thymidylate kinase M28_RS01775 PF13177 DNA polymerase III, delta subunit M28_RS01785 PF06156 M28_RS01785 M28_RS01790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M28_RS01800 PF03932 CutC family M28_RS01805 PF03960 ArsC family M28_RS01810 PF03372 Endonuclease/Exonuclease/phosphatase family M28_RS01820 PF01070 FMN-dependent dehydrogenase M28_RS01825 PF00082 Subtilase family M28_RS01825 PF02225 PA domain M28_RS01825 PF04650 M28_RS01825 M28_RS01825 PF06280 Fn3-like domain (DUF1034) M28_RS01835 PF06912 M28_RS01835 M28_RS01840 PF01588 Putative tRNA binding domain M28_RS01840 PF09334 tRNA synthetases class I (M) M28_RS01845 PF00268 Ribonucleotide reductase, small chain M28_RS01850 PF07972 NrdI Flavodoxin like M28_RS01855 PF00317 Ribonucleotide reductase, all-alpha domain M28_RS01855 PF02867 Ribonucleotide reductase, barrel domain M28_RS01855 PF08343 Ribonucleotide reductase N-terminal M28_RS01860 PF03496 ADP-ribosyltransferase exoenzyme M28_RS01890 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS01890 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS01910 PF11195 M28_RS01910 M28_RS01915 PF13561 Enoyl-(Acyl carrier protein) reductase M28_RS01920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M28_RS01925 PF07690 Major Facilitator Superfamily M28_RS01930 PF00132 Bacterial transferase hexapeptide (six repeats) M28_RS01930 PF12804 MobA-like NTP transferase domain M28_RS01935 PF00293 NUDIX domain M28_RS01945 PF01048 Phosphorylase superfamily M28_RS01955 PF01325 Iron dependent repressor, N-terminal DNA binding domain M28_RS01955 PF02742 Iron dependent repressor, metal binding and dimerisation domain M28_RS01955 PF04023 FeoA domain M28_RS01960 PF01297 Periplasmic solute binding protein family M28_RS01965 PF00005 ABC transporter M28_RS01970 PF00950 M28_RS01970 M28_RS01975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M28_RS01980 PF01580 FtsK/SpoIIIE family M28_RS01980 PF09397 Ftsk gamma domain M28_RS01985 PF11877 M28_RS01985 M28_RS01990 PF00298 Ribosomal protein L11, RNA binding domain M28_RS01990 PF03946 Ribosomal protein L11, N-terminal domain M28_RS01995 PF00687 Ribosomal protein L1p/L10e family M28_RS02000 PF00696 Amino acid kinase family M28_RS02005 PF01765 Ribosome recycling factor M28_RS02010 PF13509 S1 domain M28_RS02015 PF01625 Peptide methionine sulfoxide reductase M28_RS02020 PF06855 Protein of unknown function (DUF1250) M28_RS02025 PF01476 LysM domain M28_RS02030 PF06100 Streptococcal 67 kDa myosin-cross-reactive antigen like family M28_RS02035 PF02562 PhoH-like protein M28_RS02040 PF03167 Uracil DNA glycosylase superfamily M28_RS02045 PF02130 Uncharacterized protein family UPF0054 M28_RS02050 PF01219 Prokaryotic diacylglycerol kinase M28_RS02055 PF01926 50S ribosome-binding GTPase M28_RS02055 PF07650 KH domain M28_RS02060 PF00293 NUDIX domain M28_RS02065 PF10439 M28_RS02065 M28_RS02070 PF10439 M28_RS02070 M28_RS02075 PF00872 M28_RS02075 M28_RS02080 PF10439 M28_RS02080 M28_RS02125 PF01381 Helix-turn-helix M28_RS02130 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M28_RS02130 PF06827 Zinc finger found in FPG and IleRS M28_RS02130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M28_RS02135 PF01121 Dephospho-CoA kinase M28_RS02140 PF05872 M28_RS02140 M28_RS02145 PF07690 Major Facilitator Superfamily M28_RS02150 PF03840 Preprotein translocase SecG subunit M28_RS02155 PF00575 S1 RNA binding domain M28_RS02155 PF00773 RNB domain M28_RS02155 PF08206 Ribonuclease B OB domain M28_RS02160 PF01668 SmpB protein M28_RS02165 PF05096 Glutamine cyclotransferase M28_RS02170 PF01470 Pyroglutamyl peptidase M28_RS02175 PF06166 M28_RS02175 M28_RS02180 PF06149 M28_RS02180 M28_RS02185 PF00535 Glycosyl transferase family 2 M28_RS02190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M28_RS02195 PF00881 Nitroreductase family M28_RS02200 PF00557 Metallopeptidase family M24 M28_RS02200 PF01321 Creatinase/Prolidase N-terminal domain M28_RS02205 PF00356 Bacterial regulatory proteins, lacI family M28_RS02205 PF13377 Periplasmic binding protein-like domain M28_RS02210 PF00534 Glycosyl transferases group 1 M28_RS02210 PF13439 Glycosyltransferase Family 4 M28_RS02215 PF00534 Glycosyl transferases group 1 M28_RS02215 PF13439 Glycosyltransferase Family 4 M28_RS02220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M28_RS02220 PF02824 TGS domain M28_RS02220 PF03129 Anticodon binding domain M28_RS02220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M28_RS02225 PF00005 ABC transporter M28_RS02230 PF06182 M28_RS02230 M28_RS02235 PF06182 M28_RS02235 M28_RS02245 PF00108 Thiolase, N-terminal domain M28_RS02245 PF02803 Thiolase, C-terminal domain M28_RS02250 PF00501 AMP-binding enzyme M28_RS02255 PF11311 M28_RS02255 M28_RS02260 PF00072 Response regulator receiver domain M28_RS02260 PF00486 Transcriptional regulatory protein, C terminal M28_RS02265 PF00512 His Kinase A (phospho-acceptor) domain M28_RS02265 PF00989 PAS fold M28_RS02265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS02270 PF00753 Metallo-beta-lactamase superfamily M28_RS02275 PF00035 Double-stranded RNA binding motif M28_RS02275 PF14622 Ribonuclease-III-like M28_RS02280 PF02463 RecF/RecN/SMC N terminal domain M28_RS02280 PF06470 SMC proteins Flexible Hinge Domain M28_RS02290 PF08501 Shikimate dehydrogenase substrate binding domain M28_RS02295 PF01261 Xylose isomerase-like TIM barrel M28_RS02300 PF01996 F420-0:Gamma-glutamyl ligase M28_RS02310 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) M28_RS02320 PF00535 Glycosyl transferase family 2 M28_RS02330 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M28_RS02330 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M28_RS02330 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M28_RS02335 PF07690 Major Facilitator Superfamily M28_RS02340 PF13443 Cro/C1-type HTH DNA-binding domain M28_RS02345 PF10088 M28_RS02345 M28_RS02360 PF04221 RelB antitoxin M28_RS02365 PF05016 Plasmid stabilisation system protein M28_RS02375 PF00665 Integrase core domain M28_RS02375 PF13276 M28_RS02375 M28_RS02380 PF01527 Transposase M28_RS02385 PF08282 haloacid dehalogenase-like hydrolase M28_RS02390 PF08282 haloacid dehalogenase-like hydrolase M28_RS02395 PF00448 SRP54-type protein, GTPase domain M28_RS02395 PF02881 SRP54-type protein, helical bundle domain M28_RS02400 PF07690 Major Facilitator Superfamily M28_RS02405 PF00874 PRD domain M28_RS02405 PF03123 CAT RNA binding domain M28_RS02410 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M28_RS02410 PF00367 phosphotransferase system, EIIB M28_RS02410 PF02378 Phosphotransferase system, EIIC M28_RS02415 PF00232 Glycosyl hydrolase family 1 M28_RS02420 PF09323 M28_RS02420 M28_RS02425 PF03773 M28_RS02425 M28_RS02435 PF00575 S1 RNA binding domain M28_RS02435 PF09371 Tex-like protein N-terminal domain M28_RS02435 PF12836 Helix-hairpin-helix motif M28_RS02435 PF16921 M28_RS02435 M28_RS02440 PF10263 M28_RS02440 M28_RS02445 PF04024 M28_RS02445 M28_RS02450 PF02603 HPr Serine kinase N terminus M28_RS02450 PF07475 HPr Serine kinase C-terminal domain M28_RS02455 PF01790 M28_RS02455 M28_RS02460 PF06103 M28_RS02460 M28_RS02465 PF12732 M28_RS02465 M28_RS02470 PF11674 M28_RS02470 M28_RS02475 PF01136 M28_RS02475 M28_RS02480 PF01136 M28_RS02480 M28_RS02480 PF16325 M28_RS02480 M28_RS02485 PF02229 Transcriptional Coactivator p15 (PC4) M28_RS02495 PF00152 tRNA synthetases class II (D, K and N) M28_RS02495 PF01336 OB-fold nucleic acid binding domain M28_RS02500 PF13419 Haloacid dehalogenase-like hydrolase M28_RS02505 PF00300 Histidine phosphatase superfamily (branch 1) M28_RS02510 PF04073 Aminoacyl-tRNA editing domain M28_RS02515 PF09515 Thiamine transporter protein (Thia_YuaJ) M28_RS02520 PF01183 Glycosyl hydrolases family 25 M28_RS02525 PF07155 ECF-type riboflavin transporter, S component M28_RS02530 PF14478 Domain of unknown function (DUF4430) M28_RS02540 PF01432 Peptidase family M3 M28_RS02540 PF08439 Oligopeptidase F M28_RS02545 PF00311 Phosphoenolpyruvate carboxylase M28_RS02550 PF01098 M28_RS02550 M28_RS02555 PF00009 Elongation factor Tu GTP binding domain M28_RS02555 PF03143 Elongation factor Tu C-terminal domain M28_RS02555 PF03144 Elongation factor Tu domain 2 M28_RS02560 PF00121 Triosephosphate isomerase M28_RS02565 PF02388 FemAB family M28_RS02570 PF02388 FemAB family M28_RS02575 PF08282 haloacid dehalogenase-like hydrolase M28_RS02585 PF01966 HD domain M28_RS02590 PF09148 Domain of unknown function (DUF1934) M28_RS02595 PF00122 E1-E2 ATPase M28_RS02595 PF00689 Cation transporting ATPase, C-terminus M28_RS02595 PF00690 Cation transporter/ATPase, N-terminus M28_RS02595 PF00702 haloacid dehalogenase-like hydrolase M28_RS02600 PF00356 Bacterial regulatory proteins, lacI family M28_RS02600 PF13407 Periplasmic binding protein domain M28_RS02605 PF07940 Heparinase II/III-like protein M28_RS02605 PF16889 M28_RS02605 M28_RS02610 PF03613 M28_RS02610 M28_RS02615 PF03609 M28_RS02615 M28_RS02620 PF03830 PTS system sorbose subfamily IIB component M28_RS02625 PF07470 Glycosyl Hydrolase Family 88 M28_RS02630 PF03610 PTS system fructose IIA component M28_RS02635 PF13561 Enoyl-(Acyl carrier protein) reductase M28_RS02640 PF02502 Ribose/Galactose Isomerase M28_RS02640 PF12408 Ribose-5-phosphate isomerase M28_RS02645 PF00294 pfkB family carbohydrate kinase M28_RS02650 PF01081 KDPG and KHG aldolase M28_RS02655 PF13419 Haloacid dehalogenase-like hydrolase M28_RS02660 PF08331 M28_RS02660 M28_RS02660 PF13484 M28_RS02660 M28_RS02665 PF00472 RF-1 domain M28_RS02665 PF03462 PCRF domain M28_RS02670 PF00005 ABC transporter M28_RS02675 PF02687 M28_RS02675 M28_RS02680 PF00753 Metallo-beta-lactamase superfamily M28_RS02685 PF13561 Enoyl-(Acyl carrier protein) reductase M28_RS02690 PF00270 DEAD/DEAH box helicase M28_RS02690 PF00929 Exonuclease M28_RS02690 PF13307 Helicase C-terminal domain M28_RS02695 PF00155 Aminotransferase class I and II M28_RS02700 PF00152 tRNA synthetases class II (D, K and N) M28_RS02700 PF01336 OB-fold nucleic acid binding domain M28_RS02705 PF03668 M28_RS02705 M28_RS02710 PF01933 Uncharacterised protein family UPF0052 M28_RS02715 PF02650 WhiA C-terminal HTH domain M28_RS02715 PF10298 WhiA N-terminal LAGLIDADG-like domain M28_RS02715 PF14527 WhiA LAGLIDADG-like domain M28_RS02720 PF03577 M28_RS02720 M28_RS02725 PF01297 Periplasmic solute binding protein family M28_RS02725 PF09223 YodA lipocalin-like domain M28_RS02730 PF00392 Bacterial regulatory proteins, gntR family M28_RS02730 PF07702 UTRA domain M28_RS02735 PF01380 SIS domain M28_RS02740 PF01197 Ribosomal protein L31 M28_RS02745 PF01368 DHH family M28_RS02745 PF02272 DHHA1 domain M28_RS02750 PF00258 Flavodoxin M28_RS02755 PF01817 Chorismate mutase type II M28_RS02760 PF00654 Voltage gated chloride channel M28_RS02765 PF01245 Ribosomal protein L19 M28_RS02775 PF13419 Haloacid dehalogenase-like hydrolase M28_RS02780 PF00204 DNA gyrase B M28_RS02780 PF00986 DNA gyrase B subunit, carboxyl terminus M28_RS02780 PF01751 Toprim domain M28_RS02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS02785 PF06160 M28_RS02785 M28_RS02790 PF07997 Protein of unknown function (DUF1694) M28_RS02795 PF00113 Enolase, C-terminal TIM barrel domain M28_RS02795 PF03952 Enolase, N-terminal domain M28_RS02805 PF05043 Mga helix-turn-helix domain M28_RS02805 PF08270 M28_RS02805 M28_RS02810 PF00746 M28_RS02810 M28_RS02810 PF07564 M28_RS02810 M28_RS02820 PF00881 Nitroreductase family M28_RS02830 PF02624 YcaO-like family M28_RS02835 PF02517 CAAX protease self-immunity M28_RS02845 PF00005 ABC transporter M28_RS02850 PF12698 ABC-2 family transporter protein M28_RS02855 PF12698 ABC-2 family transporter protein M28_RS02860 PF03372 Endonuclease/Exonuclease/phosphatase family M28_RS02865 PF06177 M28_RS02865 M28_RS02870 PF00533 BRCA1 C Terminus (BRCT) domain M28_RS02870 PF01653 NAD-dependent DNA ligase adenylation domain M28_RS02870 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M28_RS02870 PF03120 NAD-dependent DNA ligase OB-fold domain M28_RS02870 PF12826 Helix-hairpin-helix motif M28_RS02870 PF14520 Helix-hairpin-helix domain M28_RS02875 PF00781 Diacylglycerol kinase catalytic domain M28_RS02880 PF00137 ATP synthase subunit C M28_RS02885 PF00119 ATP synthase A chain M28_RS02890 PF00430 ATP synthase B/B' CF(0) M28_RS02895 PF00213 ATP synthase delta (OSCP) subunit M28_RS02900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS02900 PF00306 ATP synthase alpha/beta chain, C terminal domain M28_RS02900 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS02905 PF00231 ATP synthase M28_RS02910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS02910 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS02915 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M28_RS02915 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M28_RS02920 PF06612 M28_RS02920 M28_RS02925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M28_RS02930 PF11772 M28_RS02930 M28_RS02940 PF01409 tRNA synthetases class II core domain (F) M28_RS02940 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M28_RS02945 PF01588 Putative tRNA binding domain M28_RS02945 PF03147 Ferredoxin-fold anticodon binding domain M28_RS02945 PF03483 B3/4 domain M28_RS02945 PF03484 tRNA synthetase B5 domain M28_RS02950 PF02566 OsmC-like protein M28_RS02955 PF08349 M28_RS02955 M28_RS02960 PF02687 M28_RS02960 M28_RS02965 PF00005 ABC transporter M28_RS02970 PF04228 M28_RS02970 M28_RS02975 PF12705 PD-(D/E)XK nuclease superfamily M28_RS02980 PF00580 UvrD/REP helicase N-terminal domain M28_RS02980 PF12705 PD-(D/E)XK nuclease superfamily M28_RS02980 PF13361 UvrD-like helicase C-terminal domain M28_RS02985 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS02990 PF01165 Ribosomal protein S21 M28_RS02995 PF01741 Large-conductance mechanosensitive channel, MscL M28_RS03000 PF01807 CHC2 zinc finger M28_RS03000 PF08275 DNA primase catalytic core, N-terminal domain M28_RS03000 PF10410 DnaB-helicase binding domain of primase M28_RS03000 PF13155 Toprim-like M28_RS03005 PF00140 Sigma-70 factor, region 1 M28_RS03005 PF03979 Sigma-70 factor, region 1 M28_RS03005 PF04539 Sigma-70 region 3 M28_RS03005 PF04542 Sigma-70 region 2 M28_RS03005 PF04545 Sigma-70, region 4 M28_RS03010 PF01883 Domain of unknown function DUF59 M28_RS03015 PF04321 RmlD substrate binding domain M28_RS03020 PF09314 M28_RS03020 M28_RS03025 PF00535 Glycosyl transferase family 2 M28_RS03030 PF01061 M28_RS03030 M28_RS03035 PF00005 ABC transporter M28_RS03040 PF00535 Glycosyl transferase family 2 M28_RS03045 PF05045 M28_RS03045 M28_RS03050 PF00884 Sulfatase M28_RS03055 PF00535 Glycosyl transferase family 2 M28_RS03060 PF10066 M28_RS03060 M28_RS03070 PF09913 M28_RS03070 M28_RS03075 PF01546 Peptidase family M20/M25/M40 M28_RS03075 PF07687 Peptidase dimerisation domain M28_RS03090 PF02224 Cytidylate kinase M28_RS03095 PF00707 Translation initiation factor IF-3, C-terminal domain M28_RS03095 PF05198 Translation initiation factor IF-3, N-terminal domain M28_RS03100 PF01632 Ribosomal protein L35 M28_RS03105 PF00453 Ribosomal protein L20 M28_RS03110 PF00884 Sulfatase M28_RS03115 PF10672 S-adenosylmethionine-dependent methyltransferase M28_RS03120 PF01487 Type I 3-dehydroquinase M28_RS03125 PF01264 Chorismate synthase M28_RS03130 PF06133 Protein of unknown function (DUF964) M28_RS03135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M28_RS03135 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS03140 PF08245 Mur ligase middle domain M28_RS03150 PF00266 Aminotransferase class-V M28_RS03155 PF02568 Thiamine biosynthesis protein (ThiI) M28_RS03155 PF02926 THUMP domain M28_RS03160 PF09587 Bacterial capsule synthesis protein PGA_cap M28_RS03165 PF00829 Ribosomal prokaryotic L21 protein M28_RS03170 PF04327 Protein of unknown function (DUF464) M28_RS03175 PF01016 Ribosomal L27 protein M28_RS03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M28_RS03180 PF03466 LysR substrate binding domain M28_RS03185 PF01252 M28_RS03185 M28_RS03190 PF00849 RNA pseudouridylate synthase M28_RS03190 PF01479 S4 domain M28_RS03195 PF00156 Phosphoribosyl transferase domain M28_RS03200 PF00860 Permease family M28_RS03205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M28_RS03205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M28_RS03210 PF00117 Glutamine amidotransferase class-I M28_RS03210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M28_RS03215 PF02142 MGS-like domain M28_RS03215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M28_RS03215 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M28_RS03220 PF16576 M28_RS03220 M28_RS03225 PF00005 ABC transporter M28_RS03230 PF02687 M28_RS03230 M28_RS03230 PF12704 MacB-like periplasmic core domain M28_RS03235 PF03009 Glycerophosphoryl diester phosphodiesterase family M28_RS03235 PF10110 M28_RS03235 M28_RS03240 PF00886 Ribosomal protein S16 M28_RS03245 PF13083 KH domain M28_RS03250 PF13306 Leucine rich repeats (6 copies) M28_RS03255 PF01243 Pyridoxamine 5'-phosphate oxidase M28_RS03260 PF01545 Cation efflux family M28_RS03265 PF00440 Bacterial regulatory proteins, tetR family M28_RS03265 PF14278 M28_RS03265 M28_RS03270 PF01782 RimM N-terminal domain M28_RS03270 PF05239 PRC-barrel domain M28_RS03275 PF01746 tRNA (Guanine-1)-methyltransferase M28_RS03280 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS03285 PF13303 M28_RS03285 M28_RS03290 PF02558 Ketopantoate reductase PanE/ApbA M28_RS03290 PF08546 Ketopantoate reductase PanE/ApbA C terminal M28_RS03295 PF00455 M28_RS03295 M28_RS03295 PF08220 DeoR-like helix-turn-helix domain M28_RS03300 PF00294 pfkB family carbohydrate kinase M28_RS03305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS03305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS03305 PF02378 Phosphotransferase system, EIIC M28_RS03310 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M28_RS03315 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M28_RS03325 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS03330 PF09028 Mac 1 M28_RS03340 PF06619 Protein of unknown function (DUF1149) M28_RS03345 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS03350 PF01743 Poly A polymerase head domain M28_RS03350 PF12627 Probable RNA and SrmB- binding site of polymerase A M28_RS03350 PF13735 tRNA nucleotidyltransferase domain 2 putative M28_RS03355 PF00005 ABC transporter M28_RS03355 PF12848 ABC transporter M28_RS03355 PF16326 M28_RS03355 M28_RS03365 PF01327 Polypeptide deformylase M28_RS03370 PF00149 Calcineurin-like phosphoesterase M28_RS03370 PF02872 5'-nucleotidase, C-terminal domain M28_RS03375 PF04607 Region found in RelA / SpoT proteins M28_RS03380 PF00072 Response regulator receiver domain M28_RS03380 PF00486 Transcriptional regulatory protein, C terminal M28_RS03385 PF00512 His Kinase A (phospho-acceptor) domain M28_RS03385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS03390 PF00288 GHMP kinases N terminal domain M28_RS03390 PF08544 GHMP kinases C terminal M28_RS03395 PF00288 GHMP kinases N terminal domain M28_RS03395 PF08544 GHMP kinases C terminal M28_RS03400 PF00288 GHMP kinases N terminal domain M28_RS03400 PF08544 GHMP kinases C terminal M28_RS03405 PF01070 FMN-dependent dehydrogenase M28_RS03410 PF00368 Hydroxymethylglutaryl-coenzyme A reductase M28_RS03415 PF00195 Chalcone and stilbene synthases, N-terminal domain M28_RS03415 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M28_RS03420 PF00303 Thymidylate synthase M28_RS03425 PF00186 Dihydrofolate reductase M28_RS03435 PF06689 ClpX C4-type zinc finger M28_RS03435 PF07724 AAA domain (Cdc48 subfamily) M28_RS03435 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS03440 PF01926 50S ribosome-binding GTPase M28_RS03450 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS03450 PF07724 AAA domain (Cdc48 subfamily) M28_RS03450 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS03455 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M28_RS03460 PF01676 Metalloenzyme superfamily M28_RS03465 PF03960 ArsC family M28_RS03470 PF01048 Phosphorylase superfamily M28_RS03475 PF01048 Phosphorylase superfamily M28_RS03480 PF09659 M28_RS03480 M28_RS03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M28_RS03485 PF03466 LysR substrate binding domain M28_RS03495 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M28_RS03500 PF00156 Phosphoribosyl transferase domain M28_RS03505 PF01425 Amidase M28_RS03510 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS03515 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS03520 PF03167 Uracil DNA glycosylase superfamily M28_RS03525 PF01979 Amidohydrolase family M28_RS03530 PF02660 M28_RS03530 M28_RS03535 PF00204 DNA gyrase B M28_RS03535 PF00986 DNA gyrase B subunit, carboxyl terminus M28_RS03535 PF01751 Toprim domain M28_RS03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS03540 PF00521 DNA gyrase/topoisomerase IV, subunit A M28_RS03540 PF03989 DNA gyrase C-terminal domain, beta-propeller M28_RS03545 PF01063 Aminotransferase class IV M28_RS03550 PF11184 M28_RS03550 M28_RS03565 PF00575 S1 RNA binding domain M28_RS03580 PF00581 Rhodanese-like domain M28_RS03580 PF12368 M28_RS03580 M28_RS03585 PF00043 Glutathione S-transferase, C-terminal domain M28_RS03590 PF03595 Voltage-dependent anion channel M28_RS03595 PF01715 IPP transferase M28_RS03600 PF01926 50S ribosome-binding GTPase M28_RS03600 PF13167 M28_RS03600 M28_RS03600 PF16360 M28_RS03600 M28_RS03610 PF00753 Metallo-beta-lactamase superfamily M28_RS03610 PF12706 Beta-lactamase superfamily domain M28_RS03615 PF00106 short chain dehydrogenase M28_RS03620 PF01368 DHH family M28_RS03620 PF02272 DHHA1 domain M28_RS03620 PF10141 M28_RS03620 M28_RS03625 PF00156 Phosphoribosyl transferase domain M28_RS03630 PF07261 Replication initiation and membrane attachment M28_RS03635 PF00633 Helix-hairpin-helix motif M28_RS03635 PF00730 HhH-GPD superfamily base excision DNA repair protein M28_RS03635 PF10576 Iron-sulfur binding domain of endonuclease III M28_RS03640 PF04816 Family of unknown function (DUF633) M28_RS03645 PF01784 NIF3 (NGG1p interacting factor 3) M28_RS03650 PF01266 FAD dependent oxidoreductase M28_RS03655 PF00483 Nucleotidyl transferase M28_RS03660 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase M28_RS03665 PF16363 M28_RS03665 M28_RS03670 PF00293 NUDIX domain M28_RS03675 PF01594 M28_RS03675 M28_RS03680 PF13181 Tetratricopeptide repeat M28_RS03685 PF05670 M28_RS03685 M28_RS03685 PF05833 Fibronectin-binding protein A N-terminus (FbpA) M28_RS03690 PF04392 ABC transporter substrate binding protein M28_RS03695 PF02653 M28_RS03695 M28_RS03700 PF00005 ABC transporter M28_RS03705 PF00753 Metallo-beta-lactamase superfamily M28_RS03705 PF07521 RNA-metabolising metallo-beta-lactamase M28_RS03710 PF00756 Putative esterase M28_RS03720 PF00005 ABC transporter M28_RS03720 PF12848 ABC transporter M28_RS03725 PF00676 Dehydrogenase E1 component M28_RS03730 PF02779 Transketolase, pyrimidine binding domain M28_RS03730 PF02780 Transketolase, C-terminal domain M28_RS03735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M28_RS03735 PF00364 Biotin-requiring enzyme M28_RS03735 PF02817 e3 binding domain M28_RS03745 PF00364 Biotin-requiring enzyme M28_RS03745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M28_RS03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS03750 PF02278 Polysaccharide lyase family 8, super-sandwich domain M28_RS03750 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain M28_RS03755 PF03099 Biotin/lipoate A/B protein ligase family M28_RS03755 PF10437 Bacterial lipoate protein ligase C-terminus M28_RS03760 PF07685 CobB/CobQ-like glutamine amidotransferase domain M28_RS03765 PF08245 Mur ligase middle domain M28_RS03765 PF08353 M28_RS03765 M28_RS03770 PF02457 DisA bacterial checkpoint controller nucleotide-binding M28_RS03775 PF07949 YbbR-like protein M28_RS03780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M28_RS03780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M28_RS03780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M28_RS03780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M28_RS03790 PF04055 Radical SAM superfamily M28_RS03790 PF06969 HemN C-terminal domain M28_RS03795 PF01643 Acyl-ACP thioesterase M28_RS03800 PF13242 HAD-hyrolase-like M28_RS03800 PF13344 Haloacid dehalogenase-like hydrolase M28_RS03805 PF07314 M28_RS03805 M28_RS03810 PF13395 HNH endonuclease M28_RS03810 PF16592 M28_RS03810 M28_RS03810 PF16593 M28_RS03810 M28_RS03810 PF16595 M28_RS03810 M28_RS03815 PF01867 CRISPR associated protein Cas1 M28_RS03820 PF09827 CRISPR associated protein Cas2 M28_RS03825 PF09711 CRISPR-associated protein (Cas_Csn2) M28_RS03830 PF01609 Transposase DDE domain M28_RS03830 PF13808 M28_RS03830 M28_RS03840 PF00009 Elongation factor Tu GTP binding domain M28_RS03840 PF00679 Elongation factor G C-terminus M28_RS03840 PF03144 Elongation factor Tu domain 2 M28_RS03840 PF06421 GTP-binding protein LepA C-terminus M28_RS03840 PF14492 Elongation Factor G, domain II M28_RS03845 PF00746 M28_RS03845 M28_RS03845 PF01391 Collagen triple helix repeat (20 copies) M28_RS03850 PF01641 SelR domain M28_RS03855 PF03601 M28_RS03855 M28_RS03860 PF03610 PTS system fructose IIA component M28_RS03865 PF03830 PTS system sorbose subfamily IIB component M28_RS03870 PF03609 M28_RS03870 M28_RS03875 PF03613 M28_RS03875 M28_RS03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS03880 PF06580 M28_RS03880 M28_RS03885 PF00072 Response regulator receiver domain M28_RS03885 PF12833 Helix-turn-helix domain M28_RS03890 PF13343 Bacterial extracellular solute-binding protein M28_RS03895 PF00171 Aldehyde dehydrogenase family M28_RS03900 PF01541 GIY-YIG catalytic domain M28_RS03900 PF02151 UvrB/uvrC motif M28_RS03900 PF08459 UvrC Helix-hairpin-helix N-terminal M28_RS03905 PF00881 Nitroreductase family M28_RS03910 PF01546 Peptidase family M20/M25/M40 M28_RS03915 PF01926 50S ribosome-binding GTPase M28_RS03915 PF10396 GTP-binding protein TrmE N-terminus M28_RS03915 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE M28_RS03920 PF00466 Ribosomal protein L10 M28_RS03925 PF00542 Ribosomal protein L7/L12 C-terminal domain M28_RS03925 PF16320 M28_RS03925 M28_RS03935 PF00145 C-5 cytosine-specific DNA methylase M28_RS03940 PF03432 M28_RS03940 M28_RS03955 PF11083 M28_RS03955 M28_RS03960 PF00072 Response regulator receiver domain M28_RS03960 PF00486 Transcriptional regulatory protein, C terminal M28_RS03965 PF00512 His Kinase A (phospho-acceptor) domain M28_RS03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS03975 PF00005 ABC transporter M28_RS03980 PF05147 Lanthionine synthetase C-like protein M28_RS03985 PF04738 M28_RS03985 M28_RS03985 PF14028 M28_RS03985 M28_RS03990 PF00005 ABC transporter M28_RS04005 PF01381 Helix-turn-helix M28_RS04025 PF00589 Phage integrase family M28_RS04030 PF00768 D-alanyl-D-alanine carboxypeptidase M28_RS04030 PF07943 Penicillin-binding protein 5, C-terminal domain M28_RS04035 PF01522 Polysaccharide deacetylase M28_RS04040 PF08245 Mur ligase middle domain M28_RS04045 PF01227 GTP cyclohydrolase I M28_RS04050 PF00809 Pterin binding enzyme M28_RS04055 PF02152 Dihydroneopterin aldolase M28_RS04060 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M28_RS04065 PF01565 FAD binding domain M28_RS04065 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M28_RS04070 PF00005 ABC transporter M28_RS04070 PF08402 TOBE domain M28_RS04075 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04080 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04085 PF13416 Bacterial extracellular solute-binding protein M28_RS04090 PF00072 Response regulator receiver domain M28_RS04095 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M28_RS04095 PF17203 M28_RS04095 M28_RS04100 PF03390 M28_RS04100 M28_RS04105 PF00390 Malic enzyme, N-terminal domain M28_RS04105 PF03949 Malic enzyme, NAD binding domain M28_RS04110 PF00107 Zinc-binding dehydrogenase M28_RS04110 PF08240 Alcohol dehydrogenase GroES-like domain M28_RS04115 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) M28_RS04120 PF00654 Voltage gated chloride channel M28_RS04125 PF13472 GDSL-like Lipase/Acylhydrolase family M28_RS04130 PF01594 M28_RS04130 M28_RS04135 PF04002 RadC-like JAB domain M28_RS04140 PF07722 Peptidase C26 M28_RS04145 PF02629 CoA binding domain M28_RS04145 PF06971 Putative DNA-binding protein N-terminus M28_RS04150 PF08866 Putative amino acid metabolism M28_RS04155 PF00266 Aminotransferase class-V M28_RS04160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M28_RS04160 PF14572 Phosphoribosyl synthetase-associated domain M28_RS04165 PF01928 CYTH domain M28_RS04170 PF04607 Region found in RelA / SpoT proteins M28_RS04175 PF01513 ATP-NAD kinase M28_RS04180 PF00849 RNA pseudouridylate synthase M28_RS04185 PF01515 Phosphate acetyl/butaryl transferase M28_RS04190 PF00106 short chain dehydrogenase M28_RS04200 PF00005 ABC transporter M28_RS04205 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04205 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M28_RS04210 PF00478 IMP dehydrogenase / GMP reductase domain M28_RS04215 PF00156 Phosphoribosyl transferase domain M28_RS04220 PF00860 Permease family M28_RS04225 PF02424 ApbE family M28_RS04230 PF01361 Tautomerase enzyme M28_RS04235 PF00265 Thymidine kinase M28_RS04240 PF00472 RF-1 domain M28_RS04240 PF03462 PCRF domain M28_RS04245 PF05175 Methyltransferase small domain M28_RS04250 PF01300 Telomere recombination M28_RS04255 PF00583 Acetyltransferase (GNAT) family M28_RS04260 PF00464 Serine hydroxymethyltransferase M28_RS04265 PF04245 M28_RS04265 M28_RS04270 PF13702 Lysozyme-like M28_RS04275 PF00005 ABC transporter M28_RS04275 PF00664 ABC transporter transmembrane region M28_RS04280 PF00005 ABC transporter M28_RS04280 PF00664 ABC transporter transmembrane region M28_RS04285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M28_RS04285 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS04290 PF00056 lactate/malate dehydrogenase, NAD binding domain M28_RS04290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M28_RS04295 PF00521 DNA gyrase/topoisomerase IV, subunit A M28_RS04295 PF03989 DNA gyrase C-terminal domain, beta-propeller M28_RS04300 PF04203 Sortase family M28_RS04305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M28_RS04315 PF00781 Diacylglycerol kinase catalytic domain M28_RS04320 PF03006 M28_RS04320 M28_RS04325 PF08876 M28_RS04325 M28_RS04330 PF01926 50S ribosome-binding GTPase M28_RS04335 PF01351 Ribonuclease HII M28_RS04340 PF02481 DNA recombination-mediator protein A M28_RS04345 PF01131 DNA topoisomerase M28_RS04345 PF01396 M28_RS04345 M28_RS04345 PF01751 Toprim domain M28_RS04350 PF03466 LysR substrate binding domain M28_RS04355 PF13303 M28_RS04355 M28_RS04360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M28_RS04360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M28_RS04365 PF16264 M28_RS04365 M28_RS04370 PF11750 M28_RS04370 M28_RS04375 PF01134 Glucose inhibited division protein A M28_RS04380 PF00682 HMGL-like M28_RS04380 PF02436 Conserved carboxylase domain M28_RS04385 PF04277 M28_RS04385 M28_RS04390 PF00364 Biotin-requiring enzyme M28_RS04395 PF03977 M28_RS04395 M28_RS04400 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M28_RS04405 PF00392 Bacterial regulatory proteins, gntR family M28_RS04405 PF07729 FCD domain M28_RS04410 PF03600 Citrate transporter M28_RS04420 PF00364 Biotin-requiring enzyme M28_RS04425 PF03977 M28_RS04425 M28_RS04435 PF06857 M28_RS04435 M28_RS04440 PF03328 HpcH/HpaI aldolase/citrate lyase family M28_RS04445 PF04223 Citrate lyase, alpha subunit (CitF) M28_RS04450 PF03802 M28_RS04450 M28_RS04455 PF00682 HMGL-like M28_RS04455 PF02436 Conserved carboxylase domain M28_RS04460 PF08218 Citrate lyase ligase C-terminal domain M28_RS04470 PF00589 Phage integrase family M28_RS04470 PF13495 Phage integrase, N-terminal SAM-like domain M28_RS04475 PF00717 Peptidase S24-like M28_RS04475 PF01381 Helix-turn-helix M28_RS04480 PF00448 SRP54-type protein, GTPase domain M28_RS04480 PF02881 SRP54-type protein, helical bundle domain M28_RS04480 PF02978 Signal peptide binding domain M28_RS04485 PF04297 Putative helix-turn-helix protein, YlxM / p13 like M28_RS04490 PF00392 Bacterial regulatory proteins, gntR family M28_RS04490 PF07702 UTRA domain M28_RS04500 PF00117 Glutamine amidotransferase class-I M28_RS04500 PF00958 GMP synthase C terminal domain M28_RS04500 PF02540 NAD synthase M28_RS04505 PF02388 FemAB family M28_RS04510 PF00005 ABC transporter M28_RS04510 PF12848 ABC transporter M28_RS04515 PF07155 ECF-type riboflavin transporter, S component M28_RS04520 PF08543 Phosphomethylpyrimidine kinase M28_RS04525 PF00155 Aminotransferase class I and II M28_RS04525 PF00392 Bacterial regulatory proteins, gntR family M28_RS04530 PF03477 ATP cone domain M28_RS04535 PF13091 PLD-like domain M28_RS04540 PF01268 Formate--tetrahydrofolate ligase M28_RS04545 PF03099 Biotin/lipoate A/B protein ligase family M28_RS04545 PF10437 Bacterial lipoate protein ligase C-terminus M28_RS04555 PF01661 Macro domain M28_RS04560 PF01597 Glycine cleavage H-protein M28_RS04565 PF00296 Luciferase-like monooxygenase M28_RS04570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M28_RS04575 PF03099 Biotin/lipoate A/B protein ligase family M28_RS04580 PF04127 DNA / pantothenate metabolism flavoprotein M28_RS04585 PF02441 Flavoprotein M28_RS04590 PF12822 Protein of unknown function (DUF3816) M28_RS04595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M28_RS04595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M28_RS04595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M28_RS04595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M28_RS04600 PF02653 M28_RS04600 M28_RS04605 PF02653 M28_RS04605 M28_RS04610 PF00005 ABC transporter M28_RS04615 PF02608 Basic membrane protein M28_RS04620 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M28_RS04625 PF05175 Methyltransferase small domain M28_RS04630 PF00485 Phosphoribulokinase / Uridine kinase family M28_RS04635 PF01649 Ribosomal protein S20 M28_RS04640 PF00512 His Kinase A (phospho-acceptor) domain M28_RS04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS04645 PF00072 Response regulator receiver domain M28_RS04645 PF00486 Transcriptional regulatory protein, C terminal M28_RS04650 PF01433 Peptidase family M1 M28_RS04650 PF11838 ERAP1-like C-terminal domain M28_RS04655 PF01895 PhoU domain M28_RS04660 PF00005 ABC transporter M28_RS04665 PF00005 ABC transporter M28_RS04670 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04680 PF12849 PBP superfamily domain M28_RS04685 PF01189 NOL1/NOP2/sun family M28_RS04685 PF13636 pre-rRNA processing and ribosome biogenesis M28_RS04685 PF17125 M28_RS04685 M28_RS04685 PF17126 M28_RS04685 M28_RS04690 PF00459 Inositol monophosphatase family M28_RS04695 PF05256 Uncharacterised protein family (UPF0223) M28_RS04700 PF03960 ArsC family M28_RS04705 PF01687 Riboflavin kinase M28_RS04705 PF06574 FAD synthetase M28_RS04710 PF01509 TruB family pseudouridylate synthase (N terminal domain) M28_RS04710 PF16198 M28_RS04710 M28_RS04715 PF09903 M28_RS04715 M28_RS04720 PF06081 M28_RS04720 M28_RS04720 PF11728 DUF939 C-terminal domain M28_RS04730 PF02687 M28_RS04730 M28_RS04735 PF00005 ABC transporter M28_RS04740 PF00440 Bacterial regulatory proteins, tetR family M28_RS04745 PF00392 Bacterial regulatory proteins, gntR family M28_RS04745 PF02080 TrkA-C domain M28_RS04750 PF03780 M28_RS04750 M28_RS04755 PF05532 CsbD-like M28_RS04760 PF03780 M28_RS04760 M28_RS04765 PF10031 M28_RS04765 M28_RS04775 PF04226 M28_RS04775 M28_RS04780 PF00580 UvrD/REP helicase N-terminal domain M28_RS04780 PF13361 UvrD-like helicase C-terminal domain M28_RS04785 PF01235 M28_RS04785 M28_RS04790 PF01545 Cation efflux family M28_RS04790 PF16916 M28_RS04790 M28_RS04795 PF07373 M28_RS04795 M28_RS04800 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS04805 PF00005 ABC transporter M28_RS04810 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04815 PF03831 PhnA protein M28_RS04815 PF08274 PhnA Zinc-Ribbon M28_RS04820 PF01380 SIS domain M28_RS04820 PF13522 Glutamine amidotransferase domain M28_RS04825 PF00717 Peptidase S24-like M28_RS04825 PF10502 Signal peptidase, peptidase S26 M28_RS04830 PF00224 Pyruvate kinase, barrel domain M28_RS04830 PF02887 Pyruvate kinase, alpha/beta domain M28_RS04835 PF00365 Phosphofructokinase M28_RS04840 PF01336 OB-fold nucleic acid binding domain M28_RS04840 PF02811 PHP domain M28_RS04840 PF07733 Bacterial DNA polymerase III alpha subunit M28_RS04840 PF14579 Helix-hairpin-helix motif M28_RS04845 PF00392 Bacterial regulatory proteins, gntR family M28_RS04850 PF00005 ABC transporter M28_RS04860 PF09335 M28_RS04860 M28_RS04870 PF13930 DNA/RNA non-specific endonuclease M28_RS04875 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS04875 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS04880 PF01183 Glycosyl hydrolases family 25 M28_RS04890 PF16945 M28_RS04890 M28_RS04905 PF07902 M28_RS04905 M28_RS04920 PF06605 Prophage endopeptidase tail M28_RS04925 PF05709 Phage tail protein M28_RS04940 PF12363 M28_RS04940 M28_RS04945 PF06199 M28_RS04945 M28_RS04955 PF04883 M28_RS04955 M28_RS04965 PF05135 Phage gp6-like head-tail connector protein M28_RS04970 PF12949 HeH/LEM domain M28_RS04975 PF03864 Phage major capsid protein E M28_RS04985 PF14265 M28_RS04985 M28_RS05005 PF03496 ADP-ribosyltransferase exoenzyme M28_RS05005 PF04233 M28_RS05005 M28_RS05010 PF05133 Phage portal protein, SPP1 Gp6-like M28_RS05015 PF04466 Phage terminase large subunit M28_RS05020 PF03592 Terminase small subunit M28_RS05025 PF07927 YcfA-like protein M28_RS05030 PF15919 M28_RS05030 M28_RS05050 PF07852 M28_RS05050 M28_RS05055 PF02384 N-6 DNA Methylase M28_RS05065 PF11753 M28_RS05065 M28_RS05080 PF08774 VRR-NUC domain M28_RS05085 PF09250 Bifunctional DNA primase/polymerase, N-terminal M28_RS05095 PF05037 M28_RS05095 M28_RS05100 PF00271 Helicase conserved C-terminal domain M28_RS05100 PF04851 Type III restriction enzyme, res subunit M28_RS05105 PF13479 M28_RS05105 M28_RS05130 PF13443 Cro/C1-type HTH DNA-binding domain M28_RS05180 PF00717 Peptidase S24-like M28_RS05180 PF01381 Helix-turn-helix M28_RS05185 PF02452 PemK-like protein M28_RS05190 PF00589 Phage integrase family M28_RS05190 PF14657 M28_RS05190 M28_RS05190 PF14659 Phage integrase, N-terminal SAM-like domain M28_RS05195 PF12978 Domain of Unknown Function with PDB structure (DUF3862) M28_RS05200 PF00343 Carbohydrate phosphorylase M28_RS05205 PF02446 4-alpha-glucanotransferase M28_RS05210 PF00356 Bacterial regulatory proteins, lacI family M28_RS05210 PF13377 Periplasmic binding protein-like domain M28_RS05215 PF13416 Bacterial extracellular solute-binding protein M28_RS05220 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05225 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05230 PF00356 Bacterial regulatory proteins, lacI family M28_RS05240 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05245 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05250 PF00128 Alpha amylase, catalytic domain M28_RS05250 PF00686 Starch binding domain M28_RS05250 PF01833 IPT/TIG domain M28_RS05250 PF02806 Alpha amylase, C-terminal all-beta domain M28_RS05255 PF00128 Alpha amylase, catalytic domain M28_RS05255 PF02903 Alpha amylase, N-terminal ig-like domain M28_RS05260 PF13416 Bacterial extracellular solute-binding protein M28_RS05270 PF07859 alpha/beta hydrolase fold M28_RS05275 PF04914 DltD C-terminal region M28_RS05275 PF04915 DltD N-terminal region M28_RS05275 PF04918 DltD central region M28_RS05280 PF00550 Phosphopantetheine attachment site M28_RS05285 PF03062 M28_RS05285 M28_RS05290 PF00501 AMP-binding enzyme M28_RS05290 PF13193 AMP-binding enzyme C-terminal domain M28_RS05295 PF12459 M28_RS05295 M28_RS05300 PF00271 Helicase conserved C-terminal domain M28_RS05300 PF02151 UvrB/uvrC motif M28_RS05300 PF04851 Type III restriction enzyme, res subunit M28_RS05300 PF12344 Ultra-violet resistance protein B M28_RS05305 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS05305 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05310 PF00005 ABC transporter M28_RS05315 PF02378 Phosphotransferase system, EIIC M28_RS05320 PF11687 M28_RS05320 M28_RS05325 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M28_RS05330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS05335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS05335 PF00874 PRD domain M28_RS05335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS05335 PF05043 Mga helix-turn-helix domain M28_RS05335 PF08279 HTH domain M28_RS05340 PF05913 Bacterial protein of unknown function (DUF871) M28_RS05345 PF00232 Glycosyl hydrolase family 1 M28_RS05350 PF04973 M28_RS05350 M28_RS05360 PF01018 GTP1/OBG M28_RS05360 PF01926 50S ribosome-binding GTPase M28_RS05360 PF09269 Domain of unknown function (DUF1967) M28_RS05365 PF13518 Helix-turn-helix domain M28_RS05370 PF13276 M28_RS05370 M28_RS05370 PF13333 M28_RS05370 M28_RS05375 PF00849 RNA pseudouridylate synthase M28_RS05375 PF01479 S4 domain M28_RS05380 PF03061 Thioesterase superfamily M28_RS05385 PF07690 Major Facilitator Superfamily M28_RS05390 PF08903 Domain of unknown function (DUF1846) M28_RS05395 PF03061 Thioesterase superfamily M28_RS05405 PF00239 Resolvase, N terminal domain M28_RS05405 PF07508 Recombinase M28_RS05405 PF13408 Recombinase zinc beta ribbon domain M28_RS05415 PF09681 M28_RS05415 M28_RS05420 PF12687 M28_RS05420 M28_RS05435 PF03389 MobA/MobL family M28_RS05440 PF12958 M28_RS05440 M28_RS05445 PF01047 MarR family M28_RS05455 PF12958 M28_RS05455 M28_RS05465 PF10604 Polyketide cyclase / dehydrase and lipid transport M28_RS05470 PF08020 Protein of unknown function (DUF1706) M28_RS05475 PF05958 tRNA (Uracil-5-)-methyltransferase M28_RS05480 PF03816 Cell envelope-related transcriptional attenuator domain M28_RS05485 PF01202 Shikimate kinase M28_RS05490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M28_RS05495 PF03631 M28_RS05495 M28_RS05500 PF00557 Metallopeptidase family M24 M28_RS05505 PF00392 Bacterial regulatory proteins, gntR family M28_RS05505 PF00571 CBS domain M28_RS05505 PF03061 Thioesterase superfamily M28_RS05505 PF07085 DRTGG domain M28_RS05515 PF00746 M28_RS05515 M28_RS05520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M28_RS05525 PF00438 S-adenosylmethionine synthetase, N-terminal domain M28_RS05525 PF02772 S-adenosylmethionine synthetase, central domain M28_RS05525 PF02773 S-adenosylmethionine synthetase, C-terminal domain M28_RS05530 PF04270 Streptococcal histidine triad protein M28_RS05530 PF12799 Leucine Rich repeats (2 copies) M28_RS05535 PF02237 Biotin protein ligase C terminal domain M28_RS05535 PF03099 Biotin/lipoate A/B protein ligase family M28_RS05535 PF08279 HTH domain M28_RS05540 PF01609 Transposase DDE domain M28_RS05540 PF13808 M28_RS05540 M28_RS05545 PF12169 DNA polymerase III subunits gamma and tau domain III M28_RS05545 PF13177 DNA polymerase III, delta subunit M28_RS05550 PF13185 GAF domain M28_RS05555 PF13367 M28_RS05555 M28_RS05560 PF06961 M28_RS05560 M28_RS05565 PF00485 Phosphoribulokinase / Uridine kinase family M28_RS05570 PF00270 DEAD/DEAH box helicase M28_RS05570 PF00271 Helicase conserved C-terminal domain M28_RS05575 PF01522 Polysaccharide deacetylase M28_RS05580 PF00171 Aldehyde dehydrogenase family M28_RS05585 PF00391 PEP-utilising enzyme, mobile domain M28_RS05585 PF02896 PEP-utilising enzyme, TIM barrel domain M28_RS05585 PF05524 PEP-utilising enzyme, N-terminal M28_RS05590 PF00381 PTS HPr component phosphorylation site M28_RS05595 PF00462 Glutaredoxin M28_RS05600 PF00317 Ribonucleotide reductase, all-alpha domain M28_RS05600 PF02867 Ribonucleotide reductase, barrel domain M28_RS05600 PF08343 Ribonucleotide reductase N-terminal M28_RS05605 PF00268 Ribonucleotide reductase, small chain M28_RS05610 PF00654 Voltage gated chloride channel M28_RS05615 PF01527 Transposase M28_RS05620 PF13276 M28_RS05620 M28_RS05625 PF00665 Integrase core domain M28_RS05630 PF02517 CAAX protease self-immunity M28_RS05635 PF11368 M28_RS05635 M28_RS05640 PF01381 Helix-turn-helix M28_RS05645 PF01411 tRNA synthetases class II (A) M28_RS05645 PF02272 DHHA1 domain M28_RS05645 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M28_RS05650 PF13145 PPIC-type PPIASE domain M28_RS05655 PF01596 O-methyltransferase M28_RS05660 PF07690 Major Facilitator Superfamily M28_RS05665 PF01432 Peptidase family M3 M28_RS05665 PF08439 Oligopeptidase F M28_RS05670 PF06054 M28_RS05670 M28_RS05675 PF00849 RNA pseudouridylate synthase M28_RS05675 PF01479 S4 domain M28_RS05680 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M28_RS05685 PF02547 Queuosine biosynthesis protein M28_RS05690 PF11311 M28_RS05690 M28_RS05695 PF13354 Beta-lactamase enzyme family M28_RS05710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M28_RS05710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M28_RS05715 PF06144 DNA polymerase III, delta subunit M28_RS05725 PF10531 SLBB domain M28_RS05725 PF12836 Helix-hairpin-helix motif M28_RS05730 PF01553 Acyltransferase M28_RS05735 PF05175 Methyltransferase small domain M28_RS05740 PF01541 GIY-YIG catalytic domain M28_RS05745 PF02705 M28_RS05745 M28_RS05750 PF00270 DEAD/DEAH box helicase M28_RS05750 PF00271 Helicase conserved C-terminal domain M28_RS05755 PF00009 Elongation factor Tu GTP binding domain M28_RS05755 PF03144 Elongation factor Tu domain 2 M28_RS05755 PF16658 M28_RS05755 M28_RS05760 PF09529 M28_RS05760 M28_RS05765 PF01225 Mur ligase family, catalytic domain M28_RS05765 PF02875 Mur ligase family, glutamate ligase domain M28_RS05765 PF08245 Mur ligase middle domain M28_RS05770 PF01820 D-ala D-ala ligase N-terminus M28_RS05770 PF07478 D-ala D-ala ligase C-terminus M28_RS05775 PF02132 RecR protein M28_RS05775 PF13662 Toprim domain M28_RS05785 PF01226 Formate/nitrite transporter M28_RS05795 PF02829 3H domain M28_RS05795 PF08279 HTH domain M28_RS05800 PF00300 Histidine phosphatase superfamily (branch 1) M28_RS05805 PF01180 Dihydroorotate dehydrogenase M28_RS05810 PF00122 E1-E2 ATPase M28_RS05810 PF00702 haloacid dehalogenase-like hydrolase M28_RS05815 PF00216 Bacterial DNA-binding protein M28_RS05820 PF09911 M28_RS05820 M28_RS05825 PF13472 GDSL-like Lipase/Acylhydrolase family M28_RS05830 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS05840 PF02463 RecF/RecN/SMC N terminal domain M28_RS05845 PF01316 Arginine repressor, DNA binding domain M28_RS05845 PF02863 Arginine repressor, C-terminal domain M28_RS05850 PF01479 S4 domain M28_RS05850 PF01728 FtsJ-like methyltransferase M28_RS05855 PF00348 Polyprenyl synthetase M28_RS05860 PF02609 Exonuclease VII small subunit M28_RS05865 PF02601 M28_RS05865 M28_RS05865 PF13742 M28_RS05865 M28_RS05870 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M28_RS05870 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M28_RS05875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M28_RS05875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M28_RS05875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M28_RS05875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M28_RS05880 PF00875 DNA photolyase M28_RS05880 PF03441 FAD binding domain of DNA photolyase M28_RS05885 PF00005 ABC transporter M28_RS05890 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05895 PF08796 Protein of unknown function (DUF1797) M28_RS05900 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS05900 PF02151 UvrB/uvrC motif M28_RS05900 PF07724 AAA domain (Cdc48 subfamily) M28_RS05900 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS05905 PF00293 NUDIX domain M28_RS05910 PF08860 Domain of unknown function (DUF1827) M28_RS05915 PF00133 tRNA synthetases class I (I, L, M and V) M28_RS05915 PF08264 Anticodon-binding domain of tRNA M28_RS05920 PF05103 DivIVA protein M28_RS05925 PF01479 S4 domain M28_RS05930 PF02325 M28_RS05930 M28_RS05935 PF04472 Protein of unknown function (DUF552) M28_RS05940 PF01168 Alanine racemase, N-terminal domain M28_RS05945 PF00091 Tubulin/FtsZ family, GTPase domain M28_RS05945 PF12327 FtsZ family, C-terminal domain M28_RS05950 PF02491 SHS2 domain inserted in FTSA M28_RS05950 PF11983 M28_RS05950 M28_RS05950 PF14450 Cell division protein FtsA M28_RS05955 PF08478 POTRA domain, FtsQ-type M28_RS05960 PF03033 Glycosyltransferase family 28 N-terminal domain M28_RS05960 PF04101 Glycosyltransferase family 28 C-terminal domain M28_RS05965 PF02875 Mur ligase family, glutamate ligase domain M28_RS05965 PF08245 Mur ligase middle domain M28_RS05970 PF11364 M28_RS05970 M28_RS05975 PF00009 Elongation factor Tu GTP binding domain M28_RS05975 PF00679 Elongation factor G C-terminus M28_RS05975 PF03144 Elongation factor Tu domain 2 M28_RS05980 PF00581 Rhodanese-like domain M28_RS05985 PF00480 ROK family M28_RS05990 PF06014 Bacterial protein of unknown function (DUF910) M28_RS05995 PF00210 Ferritin-like domain M28_RS06005 PF04055 Radical SAM superfamily M28_RS06005 PF13394 4Fe-4S single cluster domain M28_RS06010 PF06265 Protein of unknown function (DUF1027) M28_RS06015 PF00356 Bacterial regulatory proteins, lacI family M28_RS06015 PF13377 Periplasmic binding protein-like domain M28_RS06020 PF05362 Lon protease (S16) C-terminal proteolytic domain M28_RS06020 PF13180 PDZ domain M28_RS06025 PF01467 Cytidylyltransferase M28_RS06030 PF03602 Conserved hypothetical protein 95 M28_RS06035 PF03590 Aspartate-ammonia ligase M28_RS06040 PF00696 Amino acid kinase family M28_RS06045 PF01546 Peptidase family M20/M25/M40 M28_RS06050 PF03606 M28_RS06050 M28_RS06055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M28_RS06055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M28_RS06060 PF13673 Acetyltransferase (GNAT) domain M28_RS06065 PF02274 Amidinotransferase M28_RS06070 PF00027 Cyclic nucleotide-binding domain M28_RS06070 PF13545 Crp-like helix-turn-helix domain M28_RS06075 PF01316 Arginine repressor, DNA binding domain M28_RS06075 PF02863 Arginine repressor, C-terminal domain M28_RS06080 PF03483 B3/4 domain M28_RS06085 PF04237 YjbR M28_RS06090 PF00672 HAMP domain M28_RS06090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS06090 PF02743 Cache domain M28_RS06090 PF06580 M28_RS06090 M28_RS06095 PF00072 Response regulator receiver domain M28_RS06095 PF12833 Helix-turn-helix domain M28_RS06115 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS06120 PF03904 M28_RS06120 M28_RS06125 PF13274 M28_RS06125 M28_RS06130 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M28_RS06130 PF05257 CHAP domain M28_RS06130 PF08460 Bacterial SH3 domain M28_RS06140 PF16945 M28_RS06140 M28_RS06150 PF07104 M28_RS06150 M28_RS06155 PF07761 M28_RS06155 M28_RS06160 PF07902 M28_RS06160 M28_RS06180 PF05709 Phage tail protein M28_RS06190 PF06854 M28_RS06190 M28_RS06205 PF12691 M28_RS06205 M28_RS06210 PF11114 M28_RS06210 M28_RS06215 PF10665 M28_RS06215 M28_RS06225 PF05065 Phage capsid family M28_RS06245 PF06152 M28_RS06245 M28_RS06250 PF05133 Phage portal protein, SPP1 Gp6-like M28_RS06255 PF04466 Phage terminase large subunit M28_RS06265 PF04266 ASCH domain M28_RS06280 PF02195 ParB-like nuclease domain M28_RS06290 PF07852 M28_RS06290 M28_RS06295 PF09643 YopX protein M28_RS06305 PF11753 M28_RS06305 M28_RS06320 PF05866 Endodeoxyribonuclease RusA M28_RS06330 PF00436 Single-strand binding protein family M28_RS06335 PF04404 M28_RS06335 M28_RS06340 PF05565 M28_RS06340 M28_RS06355 PF07261 Replication initiation and membrane attachment M28_RS06380 PF13619 M28_RS06380 M28_RS06385 PF03374 M28_RS06385 M28_RS06385 PF08346 M28_RS06385 M28_RS06395 PF12844 Helix-turn-helix domain M28_RS06410 PF00589 Phage integrase family M28_RS06410 PF14657 M28_RS06410 M28_RS06410 PF14659 Phage integrase, N-terminal SAM-like domain M28_RS06415 PF01625 Peptide methionine sulfoxide reductase M28_RS06415 PF01641 SelR domain M28_RS06420 PF00578 AhpC/TSA family M28_RS06425 PF02683 M28_RS06425 M28_RS06430 PF09827 CRISPR associated protein Cas2 M28_RS06435 PF01867 CRISPR associated protein Cas1 M28_RS06440 PF01930 Domain of unknown function DUF83 M28_RS06445 PF05107 M28_RS06445 M28_RS06450 PF09709 M28_RS06450 M28_RS06455 PF09704 CRISPR-associated protein (Cas_Cas5) M28_RS06460 PF00271 Helicase conserved C-terminal domain M28_RS06460 PF01966 HD domain M28_RS06460 PF04851 Type III restriction enzyme, res subunit M28_RS06465 PF00133 tRNA synthetases class I (I, L, M and V) M28_RS06465 PF08264 Anticodon-binding domain of tRNA M28_RS06465 PF10458 Valyl tRNA synthetase tRNA binding arm M28_RS06480 PF14520 Helix-hairpin-helix domain M28_RS06485 PF08930 Domain of unknown function (DUF1912) M28_RS06490 PF01609 Transposase DDE domain M28_RS06490 PF13808 M28_RS06490 M28_RS06500 PF00589 Phage integrase family M28_RS06505 PF05595 M28_RS06505 M28_RS06515 PF00746 M28_RS06515 M28_RS06525 PF05257 CHAP domain M28_RS06540 PF12846 AAA-like domain M28_RS06545 PF12648 M28_RS06545 M28_RS06555 PF12642 Conjugative transposon protein TcpC M28_RS06585 PF01381 Helix-turn-helix M28_RS06585 PF02486 M28_RS06585 M28_RS06590 PF01580 FtsK/SpoIIIE family M28_RS06605 PF00746 M28_RS06605 M28_RS06605 PF16364 M28_RS06605 M28_RS06610 PF13529 Peptidase_C39 like family M28_RS06620 PF00085 Thioredoxin M28_RS06625 PF01381 Helix-turn-helix M28_RS06630 PF01381 Helix-turn-helix M28_RS06635 PF06114 Domain of unknown function (DUF955) M28_RS06650 PF04221 RelB antitoxin M28_RS06665 PF12833 Helix-turn-helix domain M28_RS06670 PF00793 DAHP synthetase I family M28_RS06675 PF01761 3-dehydroquinate synthase M28_RS06680 PF07883 Cupin domain M28_RS06685 PF07883 Cupin domain M28_RS06690 PF13649 Methyltransferase domain M28_RS06695 PF08501 Shikimate dehydrogenase substrate binding domain M28_RS06700 PF00703 Glycosyl hydrolases family 2 M28_RS06700 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M28_RS06700 PF02837 Glycosyl hydrolases family 2, sugar binding domain M28_RS06700 PF16355 M28_RS06700 M28_RS06705 PF00072 Response regulator receiver domain M28_RS06705 PF12833 Helix-turn-helix domain M28_RS06710 PF06580 M28_RS06710 M28_RS06715 PF04854 M28_RS06715 M28_RS06720 PF12010 M28_RS06720 M28_RS06720 PF13416 Bacterial extracellular solute-binding protein M28_RS06725 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS06730 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS06735 PF00480 ROK family M28_RS06740 PF00232 Glycosyl hydrolase family 1 M28_RS06745 PF07555 beta-N-acetylglucosaminidase M28_RS06750 PF00392 Bacterial regulatory proteins, gntR family M28_RS06750 PF13377 Periplasmic binding protein-like domain M28_RS06755 PF06824 Protein of unknown function (DUF1237) M28_RS06760 PF01074 Glycosyl hydrolases family 38 N-terminal domain M28_RS06760 PF07748 Glycosyl hydrolases family 38 C-terminal domain M28_RS06760 PF09261 Alpha mannosidase, middle domain M28_RS06765 PF14501 GHKL domain M28_RS06770 PF01938 TRAM domain M28_RS06770 PF05958 tRNA (Uracil-5-)-methyltransferase M28_RS06775 PF02631 RecX family M28_RS06780 PF04167 Protein of unknown function (DUF402) M28_RS06840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M28_RS06840 PF16321 M28_RS06840 M28_RS06850 PF00270 DEAD/DEAH box helicase M28_RS06850 PF00271 Helicase conserved C-terminal domain M28_RS06855 PF01205 Uncharacterized protein family UPF0029 M28_RS06855 PF09186 Domain of unknown function (DUF1949) M28_RS06860 PF00291 Pyridoxal-phosphate dependent enzyme M28_RS06865 PF00575 S1 RNA binding domain M28_RS06870 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M28_RS06870 PF08282 haloacid dehalogenase-like hydrolase M28_RS06875 PF00072 Response regulator receiver domain M28_RS06875 PF00196 Bacterial regulatory proteins, luxR family M28_RS06880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS06880 PF07730 Histidine kinase M28_RS06885 PF09922 Cell wall-active antibiotics response protein (DUF2154) M28_RS06890 PF00069 Protein kinase domain M28_RS06890 PF03793 PASTA domain M28_RS06895 PF13672 Protein phosphatase 2C M28_RS06900 PF01029 NusB family M28_RS06900 PF01189 NOL1/NOP2/sun family M28_RS06905 PF00551 Formyl transferase M28_RS06905 PF02911 Formyl transferase, C-terminal domain M28_RS06910 PF00271 Helicase conserved C-terminal domain M28_RS06910 PF04851 Type III restriction enzyme, res subunit M28_RS06915 PF01192 RNA polymerase Rpb6 M28_RS06920 PF00625 Guanylate kinase M28_RS06925 PF00013 KH domain M28_RS06925 PF01966 HD domain M28_RS06925 PF12072 M28_RS06925 M28_RS06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M28_RS06930 PF03466 LysR substrate binding domain M28_RS06935 PF00108 Thiolase, N-terminal domain M28_RS06935 PF02803 Thiolase, C-terminal domain M28_RS06940 PF01144 Coenzyme A transferase M28_RS06945 PF01144 Coenzyme A transferase M28_RS06950 PF13561 Enoyl-(Acyl carrier protein) reductase M28_RS06955 PF02447 M28_RS06955 M28_RS06960 PF02664 S-Ribosylhomocysteinase (LuxS) M28_RS06970 PF01170 Putative RNA methylase family UPF0020 M28_RS06970 PF02926 THUMP domain M28_RS06975 PF05103 DivIVA protein M28_RS06980 PF06908 Protein of unknown function (DUF1273) M28_RS06985 PF03838 Recombination protein U M28_RS06990 PF00905 Penicillin binding protein transpeptidase domain M28_RS06990 PF00912 Transglycosylase M28_RS06995 PF03051 Peptidase C1-like family M28_RS07000 PF02540 NAD synthase M28_RS07005 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M28_RS07010 PF00324 Amino acid permease M28_RS07015 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS07020 PF13268 M28_RS07020 M28_RS07025 PF00005 ABC transporter M28_RS07030 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS07035 PF00270 DEAD/DEAH box helicase M28_RS07035 PF00271 Helicase conserved C-terminal domain M28_RS07040 PF00953 Glycosyl transferase family 4 M28_RS07040 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M28_RS07045 PF00905 Penicillin binding protein transpeptidase domain M28_RS07045 PF03717 Penicillin-binding Protein dimerisation domain M28_RS07045 PF03793 PASTA domain M28_RS07050 PF04977 Septum formation initiator M28_RS07055 PF01795 MraW methylase family M28_RS07065 PF00171 Aldehyde dehydrogenase family M28_RS07070 PF00696 Amino acid kinase family M28_RS07080 PF00005 ABC transporter M28_RS07085 PF08951 Enterocin A Immunity M28_RS07090 PF00456 Transketolase, thiamine diphosphate binding domain M28_RS07090 PF02779 Transketolase, pyrimidine binding domain M28_RS07090 PF02780 Transketolase, C-terminal domain M28_RS07095 PF00923 Transaldolase M28_RS07100 PF05043 Mga helix-turn-helix domain M28_RS07105 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS07110 PF00230 Major intrinsic protein M28_RS07115 PF01266 FAD dependent oxidoreductase M28_RS07115 PF16901 M28_RS07115 M28_RS07120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M28_RS07120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M28_RS07125 PF03413 Peptidase propeptide and YPEB domain M28_RS07130 PF05979 Bacterial protein of unknown function (DUF896) M28_RS07135 PF02092 M28_RS07135 M28_RS07140 PF02091 Glycyl-tRNA synthetase alpha subunit M28_RS07145 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family M28_RS07150 PF00248 Aldo/keto reductase family M28_RS07155 PF01979 Amidohydrolase family M28_RS07160 PF01895 PhoU domain M28_RS07160 PF02690 M28_RS07160 M28_RS07170 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS07175 PF00440 Bacterial regulatory proteins, tetR family M28_RS07180 PF08282 haloacid dehalogenase-like hydrolase M28_RS07185 PF03458 M28_RS07185 M28_RS07190 PF01791 DeoC/LacD family aldolase M28_RS07200 PF02502 Ribose/Galactose Isomerase M28_RS07205 PF02502 Ribose/Galactose Isomerase M28_RS07210 PF03611 M28_RS07210 M28_RS07215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS07220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS07225 PF00455 M28_RS07225 M28_RS07225 PF08220 DeoR-like helix-turn-helix domain M28_RS07230 PF00403 Heavy-metal-associated domain M28_RS07235 PF00122 E1-E2 ATPase M28_RS07235 PF00403 Heavy-metal-associated domain M28_RS07235 PF00702 haloacid dehalogenase-like hydrolase M28_RS07240 PF03965 Penicillinase repressor M28_RS07245 PF07859 alpha/beta hydrolase fold M28_RS07250 PF02033 Ribosome-binding factor A M28_RS07255 PF00009 Elongation factor Tu GTP binding domain M28_RS07255 PF04760 Translation initiation factor IF-2, N-terminal region M28_RS07255 PF11987 Translation-initiation factor 2 M28_RS07260 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family M28_RS07265 PF04296 Protein of unknown function (DUF448) M28_RS07270 PF08529 NusA N-terminal domain M28_RS07270 PF13184 NusA-like KH domain M28_RS07275 PF02576 Uncharacterised BCR, YhbC family COG0779 M28_RS07285 PF02390 Putative methyltransferase M28_RS07290 PF01636 Phosphotransferase enzyme family M28_RS07295 PF05975 M28_RS07295 M28_RS07300 PF00005 ABC transporter M28_RS07305 PF01230 HIT domain M28_RS07315 PF03816 Cell envelope-related transcriptional attenuator domain M28_RS07320 PF00583 Acetyltransferase (GNAT) family M28_RS07325 PF02367 Uncharacterised P-loop hydrolase UPF0079 M28_RS07330 PF00860 Permease family M28_RS07335 PF08282 haloacid dehalogenase-like hydrolase M28_RS07340 PF03610 PTS system fructose IIA component M28_RS07340 PF03830 PTS system sorbose subfamily IIB component M28_RS07345 PF03609 M28_RS07345 M28_RS07350 PF03613 M28_RS07350 M28_RS07355 PF06115 M28_RS07355 M28_RS07360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M28_RS07360 PF02403 Seryl-tRNA synthetase N-terminal domain M28_RS07365 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M28_RS07370 PF01039 Carboxyl transferase domain M28_RS07375 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain M28_RS07375 PF02785 Biotin carboxylase C-terminal domain M28_RS07375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M28_RS07380 PF07977 FabA-like domain M28_RS07385 PF00364 Biotin-requiring enzyme M28_RS07390 PF00109 Beta-ketoacyl synthase, N-terminal domain M28_RS07390 PF02801 Beta-ketoacyl synthase, C-terminal domain M28_RS07395 PF13561 Enoyl-(Acyl carrier protein) reductase M28_RS07400 PF00698 Acyl transferase domain M28_RS07405 PF03060 Nitronate monooxygenase M28_RS07410 PF00550 Phosphopantetheine attachment site M28_RS07415 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M28_RS07415 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M28_RS07420 PF01047 MarR family M28_RS07425 PF00378 Enoyl-CoA hydratase/isomerase family M28_RS07430 PF00226 DnaJ domain M28_RS07430 PF00684 DnaJ central domain M28_RS07430 PF01556 DnaJ C terminal domain M28_RS07435 PF00012 Hsp70 protein M28_RS07440 PF01025 GrpE M28_RS07445 PF01628 HrcA protein C terminal domain M28_RS07445 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding M28_RS07450 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M28_RS07455 PF02557 D-alanyl-D-alanine carboxypeptidase M28_RS07460 PF00300 Histidine phosphatase superfamily (branch 1) M28_RS07465 PF04226 M28_RS07465 M28_RS07475 PF02637 GatB domain M28_RS07475 PF02934 GatB/GatE catalytic domain M28_RS07480 PF01425 Amidase M28_RS07485 PF02686 Glu-tRNAGln amidotransferase C subunit M28_RS07490 PF02896 PEP-utilising enzyme, TIM barrel domain M28_RS07495 PF00857 Isochorismatase family M28_RS07500 PF06018 CodY GAF-like domain M28_RS07500 PF08222 CodY helix-turn-helix domain M28_RS07505 PF00155 Aminotransferase class I and II M28_RS07510 PF00582 Universal stress protein family M28_RS07515 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M28_RS07515 PF08282 haloacid dehalogenase-like hydrolase M28_RS07520 PF00710 Asparaginase M28_RS07535 PF00270 DEAD/DEAH box helicase M28_RS07535 PF00271 Helicase conserved C-terminal domain M28_RS07535 PF17191 M28_RS07535 M28_RS07540 PF00005 ABC transporter M28_RS07545 PF02361 Cobalt transport protein M28_RS07550 PF09605 M28_RS07550 M28_RS07555 PF00005 ABC transporter M28_RS07555 PF00664 ABC transporter transmembrane region M28_RS07560 PF00005 ABC transporter M28_RS07560 PF00664 ABC transporter transmembrane region M28_RS07565 PF00005 ABC transporter M28_RS07570 PF01032 FecCD transport family M28_RS07575 PF01497 Periplasmic binding protein M28_RS07580 PF11545 Cell surface heme-binding protein Shp M28_RS07585 PF05031 Iron Transport-associated domain M28_RS07585 PF07550 M28_RS07585 M28_RS07585 PF13855 Leucine rich repeat M28_RS07590 PF05257 CHAP domain M28_RS07595 PF00842 Alanine racemase, C-terminal domain M28_RS07595 PF01168 Alanine racemase, N-terminal domain M28_RS07600 PF01648 4'-phosphopantetheinyl transferase superfamily M28_RS07605 PF01043 SecA preprotein cross-linking domain M28_RS07605 PF02810 SEC-C motif M28_RS07605 PF07516 SecA Wing and Scaffold domain M28_RS07605 PF07517 SecA DEAD-like domain M28_RS07610 PF01238 Phosphomannose isomerase type I M28_RS07615 PF00480 ROK family M28_RS07625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M28_RS07625 PF00367 phosphotransferase system, EIIB M28_RS07625 PF02378 Phosphotransferase system, EIIC M28_RS07630 PF00251 Glycosyl hydrolases family 32 N-terminal domain M28_RS07630 PF08244 Glycosyl hydrolases family 32 C terminal M28_RS07635 PF00356 Bacterial regulatory proteins, lacI family M28_RS07635 PF13377 Periplasmic binding protein-like domain M28_RS07640 PF01029 NusB family M28_RS07645 PF03780 M28_RS07645 M28_RS07650 PF01132 Elongation factor P (EF-P) OB domain M28_RS07650 PF08207 Elongation factor P (EF-P) KOW-like domain M28_RS07650 PF09285 Elongation factor P, C-terminal M28_RS07655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M28_RS07660 PF00557 Metallopeptidase family M24 M28_RS07660 PF01321 Creatinase/Prolidase N-terminal domain M28_RS07665 PF00005 ABC transporter M28_RS07670 PF01544 CorA-like Mg2+ transporter protein M28_RS07675 PF06570 M28_RS07675 M28_RS07680 PF01084 Ribosomal protein S18 M28_RS07685 PF00436 Single-strand binding protein family M28_RS07690 PF01250 Ribosomal protein S6 M28_RS07700 PF00633 Helix-hairpin-helix motif M28_RS07700 PF00730 HhH-GPD superfamily base excision DNA repair protein M28_RS07700 PF14815 NUDIX domain M28_RS07710 PF00085 Thioredoxin M28_RS07715 PF01569 PAP2 superfamily M28_RS07720 PF00488 MutS domain V M28_RS07720 PF01713 Smr domain M28_RS07725 PF02674 M28_RS07725 M28_RS07735 PF01351 Ribonuclease HII M28_RS07735 PF11858 Domain of unknown function (DUF3378) M28_RS07740 PF00717 Peptidase S24-like M28_RS07745 PF13538 UvrD-like helicase C-terminal domain M28_RS07745 PF13604 AAA domain M28_RS07745 PF14490 Helix-hairpin-helix containing domain M28_RS07755 PF00817 impB/mucB/samB family M28_RS07755 PF11798 IMS family HHH motif M28_RS07755 PF11799 impB/mucB/samB family C-terminal domain M28_RS07760 PF01228 Glycine radical M28_RS07760 PF02901 Pyruvate formate lyase M28_RS07765 PF00144 Beta-lactamase M28_RS07770 PF14506 CppA N-terminal M28_RS07770 PF14507 CppA C-terminal M28_RS07775 PF01925 M28_RS07775 M28_RS07780 PF00230 Major intrinsic protein M28_RS07785 PF07690 Major Facilitator Superfamily M28_RS07790 PF13545 Crp-like helix-turn-helix domain M28_RS07795 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M28_RS07795 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain M28_RS07795 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal M28_RS07800 PF01381 Helix-turn-helix M28_RS07805 PF01381 Helix-turn-helix M28_RS07810 PF02575 YbaB/EbfC DNA-binding family M28_RS07815 PF13411 MerR HTH family regulatory protein M28_RS07820 PF00929 Exonuclease M28_RS07825 PF04394 M28_RS07825 M28_RS07825 PF08279 HTH domain M28_RS07850 PF03486 HI0933-like protein M28_RS07855 PF01791 DeoC/LacD family aldolase M28_RS07860 PF01773 Na+ dependent nucleoside transporter N-terminus M28_RS07860 PF07662 Na+ dependent nucleoside transporter C-terminus M28_RS07865 PF01048 Phosphorylase superfamily M28_RS07870 PF00392 Bacterial regulatory proteins, gntR family M28_RS07875 PF00253 Ribosomal protein S14p/S29e M28_RS07880 PF00814 Glycoprotease family M28_RS07885 PF13508 Acetyltransferase (GNAT) domain M28_RS07890 PF00814 Glycoprotease family M28_RS07895 PF07288 Protein of unknown function (DUF1447) M28_RS07900 PF00753 Metallo-beta-lactamase superfamily M28_RS07900 PF07521 RNA-metabolising metallo-beta-lactamase M28_RS07905 PF00120 Glutamine synthetase, catalytic domain M28_RS07905 PF03951 Glutamine synthetase, beta-Grasp domain M28_RS07910 PF13411 MerR HTH family regulatory protein M28_RS07915 PF06081 M28_RS07915 M28_RS07920 PF00162 Phosphoglycerate kinase M28_RS07925 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) M28_RS07935 PF02734 DAK2 domain M28_RS07935 PF13684 Dihydroxyacetone kinase family M28_RS07940 PF03780 M28_RS07940 M28_RS07945 PF00830 Ribosomal L28 family M28_RS07950 PF01116 Fructose-bisphosphate aldolase class-II M28_RS07960 PF12146 Putative lysophospholipase M28_RS07965 PF00117 Glutamine amidotransferase class-I M28_RS07965 PF06418 CTP synthase N-terminus M28_RS07970 PF05066 HB1, ASXL, restriction endonuclease HTH domain M28_RS07975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M28_RS07975 PF05697 Bacterial trigger factor protein (TF) M28_RS07975 PF05698 Bacterial trigger factor protein (TF) C-terminus M28_RS07980 PF00924 Mechanosensitive ion channel M28_RS07985 PF04260 Protein of unknown function (DUF436) M28_RS07990 PF07155 ECF-type riboflavin transporter, S component M28_RS07995 PF08543 Phosphomethylpyrimidine kinase M28_RS08000 PF01416 tRNA pseudouridine synthase M28_RS08040 PF02595 Glycerate kinase family M28_RS08045 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M28_RS08045 PF04851 Type III restriction enzyme, res subunit M28_RS08045 PF12008 Type I restriction and modification enzyme - subunit R C terminal M28_RS08050 PF01420 Type I restriction modification DNA specificity domain M28_RS08055 PF02384 N-6 DNA Methylase M28_RS08055 PF12161 HsdM N-terminal domain M28_RS08065 PF00072 Response regulator receiver domain M28_RS08065 PF00196 Bacterial regulatory proteins, luxR family M28_RS08075 PF02687 M28_RS08075 M28_RS08080 PF00005 ABC transporter M28_RS08085 PF00005 ABC transporter M28_RS08090 PF13575 M28_RS08090 M28_RS08095 PF04604 Type-A lantibiotic M28_RS08100 PF00232 Glycosyl hydrolase family 1 M28_RS08105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS08105 PF02378 Phosphotransferase system, EIIC M28_RS08110 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M28_RS08115 PF01791 DeoC/LacD family aldolase M28_RS08120 PF00294 pfkB family carbohydrate kinase M28_RS08125 PF02502 Ribose/Galactose Isomerase M28_RS08130 PF02502 Ribose/Galactose Isomerase M28_RS08135 PF00455 M28_RS08135 M28_RS08135 PF08220 DeoR-like helix-turn-helix domain M28_RS08145 PF05016 Plasmid stabilisation system protein M28_RS08150 PF14659 Phage integrase, N-terminal SAM-like domain M28_RS08155 PF00380 Ribosomal protein S9/S16 M28_RS08160 PF00572 Ribosomal protein L13 M28_RS08165 PF01381 Helix-turn-helix M28_RS08175 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS08180 PF05991 M28_RS08180 M28_RS08185 PF00588 SpoU rRNA Methylase family M28_RS08185 PF08032 RNA 2'-O ribose methyltransferase substrate binding M28_RS08195 PF00636 Ribonuclease III domain M28_RS08200 PF01406 tRNA synthetases class I (C) catalytic domain M28_RS08200 PF09190 DALR domain M28_RS08210 PF00132 Bacterial transferase hexapeptide (six repeats) M28_RS08215 PF07179 M28_RS08215 M28_RS08220 PF00013 KH domain M28_RS08220 PF00575 S1 RNA binding domain M28_RS08220 PF01138 3' exoribonuclease family, domain 1 M28_RS08220 PF03725 3' exoribonuclease family, domain 2 M28_RS08220 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M28_RS08225 PF00923 Transaldolase M28_RS08230 PF03611 M28_RS08230 M28_RS08235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS08240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS08240 PF00874 PRD domain M28_RS08245 PF00312 Ribosomal protein S15 M28_RS08255 PF01327 Polypeptide deformylase M28_RS08260 PF03358 NADPH-dependent FMN reductase M28_RS08265 PF01047 MarR family M28_RS08270 PF00929 Exonuclease M28_RS08270 PF02811 PHP domain M28_RS08270 PF07733 Bacterial DNA polymerase III alpha subunit M28_RS08270 PF11490 M28_RS08270 M28_RS08270 PF14480 M28_RS08270 M28_RS08270 PF14579 Helix-hairpin-helix motif M28_RS08275 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M28_RS08275 PF03129 Anticodon binding domain M28_RS08275 PF04073 Aminoacyl-tRNA editing domain M28_RS08280 PF02163 Peptidase family M50 M28_RS08280 PF13180 PDZ domain M28_RS08285 PF01148 Cytidylyltransferase family M28_RS08290 PF01255 Putative undecaprenyl diphosphate synthase M28_RS08295 PF02699 Preprotein translocase subunit M28_RS08300 PF00085 Thioredoxin M28_RS08305 PF00128 Alpha amylase, catalytic domain M28_RS08305 PF00746 M28_RS08305 M28_RS08305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M28_RS08305 PF03714 Bacterial pullanase-associated domain M28_RS08310 PF00128 Alpha amylase, catalytic domain M28_RS08310 PF11941 Domain of unknown function (DUF3459) M28_RS08315 PF00005 ABC transporter M28_RS08315 PF03459 TOBE domain M28_RS08320 PF13556 PucR C-terminal helix-turn-helix domain M28_RS08325 PF02821 Staphylokinase/Streptokinase family M28_RS08330 PF02580 D-Tyr-tRNA(Tyr) deacylase M28_RS08335 PF02824 TGS domain M28_RS08335 PF04607 Region found in RelA / SpoT proteins M28_RS08335 PF13291 ACT domain M28_RS08335 PF13328 HD domain M28_RS08340 PF00746 M28_RS08340 M28_RS08340 PF01391 Collagen triple helix repeat (20 copies) M28_RS08345 PF07972 NrdI Flavodoxin like M28_RS08350 PF03372 Endonuclease/Exonuclease/phosphatase family M28_RS08355 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M28_RS08355 PF00367 phosphotransferase system, EIIB M28_RS08355 PF02378 Phosphotransferase system, EIIC M28_RS08360 PF04452 RNA methyltransferase M28_RS08365 PF06325 Ribosomal protein L11 methyltransferase (PrmA) M28_RS08370 PF11217 Protein of unknown function (DUF3013) M28_RS08375 PF00425 chorismate binding enzyme M28_RS08375 PF01063 Aminotransferase class IV M28_RS08380 PF00117 Glutamine amidotransferase class-I M28_RS08385 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS08385 PF12002 MgsA AAA+ ATPase C terminal M28_RS08385 PF16193 M28_RS08385 M28_RS08395 PF13673 Acetyltransferase (GNAT) domain M28_RS08400 PF00005 ABC transporter M28_RS08405 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS08405 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS08410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M28_RS08415 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS08420 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS08425 PF00005 ABC transporter M28_RS08430 PF00005 ABC transporter M28_RS08435 PF05532 CsbD-like M28_RS08440 PF04270 Streptococcal histidine triad protein M28_RS08445 PF01297 Periplasmic solute binding protein family M28_RS08450 PF01609 Transposase DDE domain M28_RS08450 PF13808 M28_RS08450 M28_RS08455 PF04650 M28_RS08455 M28_RS08460 PF00082 Subtilase family M28_RS08460 PF02225 PA domain M28_RS08460 PF06280 Fn3-like domain (DUF1034) M28_RS08460 PF13585 C-terminal domain of CHU protein family M28_RS08465 PF00746 M28_RS08465 M28_RS08470 PF00746 M28_RS08470 M28_RS08470 PF02370 M protein repeat M28_RS08470 PF04650 M28_RS08470 M28_RS08475 PF00746 M28_RS08475 M28_RS08475 PF04650 M28_RS08475 M28_RS08480 PF05043 Mga helix-turn-helix domain M28_RS08480 PF08270 M28_RS08480 M28_RS08480 PF08280 M protein trans-acting positive regulator (MGA) HTH domain M28_RS08490 PF05257 CHAP domain M28_RS08495 PF00512 His Kinase A (phospho-acceptor) domain M28_RS08495 PF00672 HAMP domain M28_RS08495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS08500 PF00072 Response regulator receiver domain M28_RS08500 PF00486 Transcriptional regulatory protein, C terminal M28_RS08505 PF02687 M28_RS08505 M28_RS08505 PF12704 MacB-like periplasmic core domain M28_RS08510 PF00005 ABC transporter M28_RS08515 PF16576 M28_RS08515 M28_RS08525 PF14131 Domain of unknown function (DUF4298) M28_RS08530 PF00746 M28_RS08530 M28_RS08530 PF02986 Fibronectin binding repeat M28_RS08535 PF00092 von Willebrand factor type A domain M28_RS08535 PF00746 M28_RS08535 M28_RS08535 PF02986 Fibronectin binding repeat M28_RS08545 PF13145 PPIC-type PPIASE domain M28_RS08550 PF13734 Spi protease inhibitor M28_RS08555 PF01640 Peptidase C10 family M28_RS08555 PF13734 Spi protease inhibitor M28_RS08565 PF01223 DNA/RNA non-specific endonuclease M28_RS08570 PF04608 Phosphatidylglycerophosphatase A M28_RS08575 PF00465 Iron-containing alcohol dehydrogenase M28_RS08580 PF00923 Transaldolase M28_RS08585 PF01228 Glycine radical M28_RS08585 PF02901 Pyruvate formate lyase M28_RS08590 PF02378 Phosphotransferase system, EIIC M28_RS08595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS08600 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M28_RS08605 PF04198 Putative sugar-binding domain M28_RS08610 PF00455 M28_RS08610 M28_RS08610 PF08220 DeoR-like helix-turn-helix domain M28_RS08615 PF04055 Radical SAM superfamily M28_RS08615 PF13353 4Fe-4S single cluster domain M28_RS08620 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M28_RS08625 PF00905 Penicillin binding protein transpeptidase domain M28_RS08625 PF00912 Transglycosylase M28_RS08640 PF00849 RNA pseudouridylate synthase M28_RS08650 PF03577 M28_RS08650 M28_RS08655 PF12844 Helix-turn-helix domain M28_RS08660 PF00118 TCP-1/cpn60 chaperonin family M28_RS08665 PF00166 Chaperonin 10 Kd subunit M28_RS08670 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS08670 PF02861 Clp amino terminal domain M28_RS08670 PF07724 AAA domain (Cdc48 subfamily) M28_RS08670 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS08675 PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) M28_RS08680 PF00313 'Cold-shock' DNA-binding domain M28_RS08690 PF00578 AhpC/TSA family M28_RS08690 PF10417 C-terminal domain of 1-Cys peroxiredoxin M28_RS08695 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS08695 PF13192 Thioredoxin domain M28_RS08700 PF01979 Amidohydrolase family M28_RS08705 PF01175 Urocanase M28_RS08710 PF02971 Formiminotransferase domain M28_RS08710 PF07837 Formiminotransferase domain, N-terminal subdomain M28_RS08715 PF04961 Formiminotransferase-cyclodeaminase M28_RS08720 PF01268 Formate--tetrahydrofolate ligase M28_RS08725 PF05962 HutD M28_RS08730 PF13520 Amino acid permease M28_RS08735 PF00221 Aromatic amino acid lyase M28_RS08740 PF00491 Arginase family M28_RS08745 PF03704 Bacterial transcriptional activator domain M28_RS08745 PF13191 AAA ATPase domain M28_RS08750 PF00318 Ribosomal protein S2 M28_RS08755 PF00889 Elongation factor TS M28_RS08760 PF01431 Peptidase family M13 M28_RS08760 PF05649 Peptidase family M13 M28_RS08765 PF00128 Alpha amylase, catalytic domain M28_RS08770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M28_RS08770 PF00367 phosphotransferase system, EIIB M28_RS08770 PF02378 Phosphotransferase system, EIIC M28_RS08775 PF00392 Bacterial regulatory proteins, gntR family M28_RS08775 PF07702 UTRA domain M28_RS08785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M28_RS08790 PF03883 M28_RS08790 M28_RS08795 PF13353 4Fe-4S single cluster domain M28_RS08800 PF13302 Acetyltransferase (GNAT) domain M28_RS08805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M28_RS08810 PF03477 ATP cone domain M28_RS08810 PF13597 Anaerobic ribonucleoside-triphosphate reductase M28_RS08815 PF09852 M28_RS08815 M28_RS08820 PF06949 M28_RS08820 M28_RS08825 PF03652 Uncharacterised protein family (UPF0081) M28_RS08830 PF06135 M28_RS08830 M28_RS08835 PF03960 ArsC family M28_RS08840 PF00154 recA bacterial DNA recombination protein M28_RS08845 PF00994 Probable molybdopterin binding domain M28_RS08845 PF02464 Competence-damaged protein M28_RS08850 PF03352 Methyladenine glycosylase M28_RS08855 PF01330 RuvA N terminal domain M28_RS08855 PF07499 RuvA, C-terminal domain M28_RS08855 PF14520 Helix-hairpin-helix domain M28_RS08860 PF07690 Major Facilitator Superfamily M28_RS08865 PF01119 DNA mismatch repair protein, C-terminal domain M28_RS08865 PF08676 MutL C terminal dimerisation domain M28_RS08865 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS08870 PF00589 Phage integrase family M28_RS08870 PF14659 Phage integrase, N-terminal SAM-like domain M28_RS08875 PF00717 Peptidase S24-like M28_RS08875 PF01381 Helix-turn-helix M28_RS08880 PF01381 Helix-turn-helix M28_RS08885 PF12844 Helix-turn-helix domain M28_RS08895 PF09669 M28_RS08895 M28_RS08935 PF08708 Primase C terminal 1 (PriCT-1) M28_RS08940 PF05272 M28_RS08940 M28_RS08970 PF07374 M28_RS08970 M28_RS08975 PF07374 M28_RS08975 M28_RS08985 PF00488 MutS domain V M28_RS08985 PF01624 MutS domain I M28_RS08985 PF05188 MutS domain II M28_RS08985 PF05190 MutS family domain IV M28_RS08985 PF05192 MutS domain III M28_RS08990 PF06133 Protein of unknown function (DUF964) M28_RS08995 PF01316 Arginine repressor, DNA binding domain M28_RS08995 PF02863 Arginine repressor, C-terminal domain M28_RS09000 PF00750 tRNA synthetases class I (R) M28_RS09000 PF03485 Arginyl tRNA synthetase N terminal domain M28_RS09000 PF05746 DALR anticodon binding domain M28_RS09005 PF08951 Enterocin A Immunity M28_RS09010 PF02588 M28_RS09010 M28_RS09010 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09015 PF02588 M28_RS09015 M28_RS09015 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09020 PF02588 M28_RS09020 M28_RS09020 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09025 PF00152 tRNA synthetases class II (D, K and N) M28_RS09025 PF01336 OB-fold nucleic acid binding domain M28_RS09025 PF02938 GAD domain M28_RS09030 PF03129 Anticodon binding domain M28_RS09030 PF13393 Histidyl-tRNA synthetase M28_RS09035 PF01783 Ribosomal L32p protein family M28_RS09040 PF00471 Ribosomal protein L33 M28_RS09045 PF03596 M28_RS09045 M28_RS09050 PF01022 Bacterial regulatory protein, arsR family M28_RS09060 PF00005 ABC transporter M28_RS09075 PF04018 M28_RS09075 M28_RS09080 PF00293 NUDIX domain M28_RS09085 PF03551 Transcriptional regulator PadR-like family M28_RS09090 PF08006 M28_RS09090 M28_RS09095 PF13349 M28_RS09095 M28_RS09100 PF12051 M28_RS09100 M28_RS09105 PF00440 Bacterial regulatory proteins, tetR family M28_RS09110 PF05016 Plasmid stabilisation system protein M28_RS09120 PF07374 M28_RS09120 M28_RS09125 PF04545 Sigma-70, region 4 M28_RS09210 PF02498 M28_RS09210 M28_RS09215 PF01381 Helix-turn-helix M28_RS09225 PF00589 Phage integrase family M28_RS09225 PF14659 Phage integrase, N-terminal SAM-like domain M28_RS09230 PF00163 Ribosomal protein S4/S9 N-terminal domain M28_RS09230 PF01479 S4 domain M28_RS09235 PF06257 Protein of unknown function (DUF1021) M28_RS09240 PF00772 DnaB-like helicase N terminal domain M28_RS09240 PF03796 DnaB-like helicase C terminal domain M28_RS09245 PF01281 Ribosomal protein L9, N-terminal domain M28_RS09245 PF03948 Ribosomal protein L9, C-terminal domain M28_RS09250 PF01368 DHH family M28_RS09250 PF02272 DHHA1 domain M28_RS09255 PF01134 Glucose inhibited division protein A M28_RS09255 PF13932 GidA associated domain 3 M28_RS09265 PF03054 tRNA methyl transferase M28_RS09270 PF01842 ACT domain M28_RS09270 PF03315 Serine dehydratase beta chain M28_RS09275 PF03313 M28_RS09275 M28_RS09280 PF01464 Transglycosylase SLT domain M28_RS09285 PF02361 Cobalt transport protein M28_RS09290 PF00005 ABC transporter M28_RS09295 PF00005 ABC transporter M28_RS09300 PF01066 CDP-alcohol phosphatidyltransferase M28_RS09305 PF13413 Helix-turn-helix domain M28_RS09310 PF00675 Insulinase (Peptidase family M16) M28_RS09310 PF05193 Peptidase M16 inactive domain M28_RS09315 PF05193 Peptidase M16 inactive domain M28_RS09325 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M28_RS09325 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M28_RS09325 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M28_RS09330 PF00483 Nucleotidyl transferase M28_RS09335 PF13275 S4 domain M28_RS09340 PF02463 RecF/RecN/SMC N terminal domain M28_RS09345 PF06800 M28_RS09345 M28_RS09350 PF00478 IMP dehydrogenase / GMP reductase domain M28_RS09350 PF00571 CBS domain M28_RS09355 PF00579 tRNA synthetases class I (W and Y) M28_RS09360 PF02588 M28_RS09360 M28_RS09360 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09365 PF00005 ABC transporter M28_RS09365 PF12848 ABC transporter M28_RS09370 PF09586 M28_RS09370 M28_RS09395 PF02590 Predicted SPOUT methyltransferase M28_RS09400 PF13180 PDZ domain M28_RS09400 PF13365 Trypsin-like peptidase domain M28_RS09405 PF02195 ParB-like nuclease domain M28_RS09405 PF08535 KorB domain M28_RS09445 PF00746 M28_RS09445 M28_RS09445 PF08428 M28_RS09445 M28_RS09450 PF04650 M28_RS09450 M28_RS09450 PF08428 M28_RS09450 M28_RS09450 PF08829 Alpha C protein N terminal