locus-tag class description M28_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix M28_RS00005 PF00308 Bacterial dnaA protein M28_RS00010 PF02767 DNA polymerase III beta subunit, central domain M28_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain M28_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain M28_RS00020 PF06071 Protein of unknown function (DUF933) M28_RS00020 PF01926 50S ribosome-binding GTPase M28_RS00025 PF01195 Peptidyl-tRNA hydrolase M28_RS00030 PF17757 UvrB interaction domain M28_RS00030 PF03461 TRCF domain M28_RS00030 PF00271 Helicase conserved C-terminal domain M28_RS00030 PF00270 DEAD/DEAH box helicase M28_RS00030 PF02559 CarD-like/TRCF domain M28_RS00035 PF01479 S4 domain M28_RS00050 PF01171 PP-loop family M28_RS00055 PF00156 Phosphoribosyl transferase domain M28_RS00060 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS00060 PF17862 AAA+ lid domain M28_RS00060 PF06480 FtsH Extracellular M28_RS00060 PF01434 Peptidase family M41 M28_RS00065 PF13520 Amino acid permease M28_RS00245 PF05257 CHAP domain M28_RS00245 PF01476 LysM domain M28_RS00250 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M28_RS00250 PF14572 Phosphoribosyl synthetase-associated domain M28_RS00255 PF02565 Recombination protein O C terminal M28_RS00255 PF11967 Recombination protein O N terminal M28_RS00260 PF02504 Fatty acid synthesis protein M28_RS00265 PF00550 Phosphopantetheine attachment site M28_RS00270 PF01259 SAICAR synthetase M28_RS00275 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M28_RS00275 PF02769 AIR synthase related protein, C-terminal domain M28_RS00275 PF00586 AIR synthase related protein, N-terminal domain M28_RS00280 PF00156 Phosphoribosyl transferase domain M28_RS00280 PF13537 Glutamine amidotransferase domain M28_RS00285 PF02769 AIR synthase related protein, C-terminal domain M28_RS00285 PF00586 AIR synthase related protein, N-terminal domain M28_RS00290 PF00551 Formyl transferase M28_RS00295 PF02142 MGS-like domain M28_RS00295 PF01808 AICARFT/IMPCHase bienzyme M28_RS00305 PF02844 Phosphoribosylglycinamide synthetase, N domain M28_RS00305 PF02843 Phosphoribosylglycinamide synthetase, C domain M28_RS00305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M28_RS00310 PF00731 AIR carboxylase M28_RS00315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M28_RS00315 PF02222 ATP-grasp domain M28_RS00325 PF10397 Adenylosuccinate lyase C-terminus M28_RS00325 PF00206 Lyase M28_RS00335 PF05496 Holliday junction DNA helicase RuvB P-loop domain M28_RS00335 PF17864 RuvB AAA lid domain M28_RS00335 PF05491 RuvB C-terminal winged helix domain M28_RS00340 PF01451 Low molecular weight phosphotyrosine protein phosphatase M28_RS00350 PF01757 Acyltransferase family M28_RS00355 PF00171 Aldehyde dehydrogenase family M28_RS00355 PF00465 Iron-containing alcohol dehydrogenase M28_RS00360 PF08240 Alcohol dehydrogenase GroES-like domain M28_RS00360 PF00107 Zinc-binding dehydrogenase M28_RS00365 PF01554 MatE M28_RS00370 PF00338 Ribosomal protein S10p/S20e M28_RS00375 PF00297 Ribosomal protein L3 M28_RS00380 PF00573 Ribosomal protein L4/L1 family M28_RS00385 PF00276 Ribosomal protein L23 M28_RS00390 PF00181 Ribosomal Proteins L2, RNA binding domain M28_RS00390 PF03947 Ribosomal Proteins L2, C-terminal domain M28_RS00395 PF00203 Ribosomal protein S19 M28_RS00400 PF00237 Ribosomal protein L22p/L17e M28_RS00405 PF00189 Ribosomal protein S3, C-terminal domain M28_RS00405 PF07650 KH domain M28_RS00410 PF00252 Ribosomal protein L16p/L10e M28_RS00415 PF00831 Ribosomal L29 protein M28_RS00420 PF00366 Ribosomal protein S17 M28_RS00425 PF00238 Ribosomal protein L14p/L23e M28_RS00430 PF00467 KOW motif M28_RS00430 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M28_RS00435 PF00673 ribosomal L5P family C-terminus M28_RS00435 PF00281 Ribosomal protein L5 M28_RS00440 PF00253 Ribosomal protein S14p/S29e M28_RS00445 PF00410 Ribosomal protein S8 M28_RS00450 PF00347 Ribosomal protein L6 M28_RS00455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M28_RS00460 PF00333 Ribosomal protein S5, N-terminal domain M28_RS00460 PF03719 Ribosomal protein S5, C-terminal domain M28_RS00465 PF00327 Ribosomal protein L30p/L7e M28_RS00470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M28_RS00475 PF00344 SecY translocase M28_RS00485 PF01176 Translation initiation factor 1A / IF-1 M28_RS00490 PF00444 Ribosomal protein L36 M28_RS00495 PF00416 Ribosomal protein S13/S18 M28_RS00500 PF00411 Ribosomal protein S11 M28_RS00505 PF01000 RNA polymerase Rpb3/RpoA insert domain M28_RS00505 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M28_RS00505 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M28_RS00510 PF01196 Ribosomal protein L17 M28_RS00600 PF08544 GHMP kinases C terminal M28_RS00600 PF00288 GHMP kinases N terminal domain M28_RS00605 PF08544 GHMP kinases C terminal M28_RS00605 PF00288 GHMP kinases N terminal domain M28_RS00610 PF08544 GHMP kinases C terminal M28_RS00610 PF00288 GHMP kinases N terminal domain M28_RS00615 PF01047 MarR family M28_RS00620 PF00005 ABC transporter M28_RS00625 PF00950 ABC 3 transport family M28_RS00635 PF00579 tRNA synthetases class I (W and Y) M28_RS00635 PF01479 S4 domain M28_RS00640 PF00912 Transglycosylase M28_RS00640 PF00905 Penicillin binding protein transpeptidase domain M28_RS00645 PF10385 RNA polymerase beta subunit external 1 domain M28_RS00645 PF04565 RNA polymerase Rpb2, domain 3 M28_RS00645 PF04561 RNA polymerase Rpb2, domain 2 M28_RS00645 PF04563 RNA polymerase beta subunit M28_RS00645 PF00562 RNA polymerase Rpb2, domain 6 M28_RS00645 PF04560 RNA polymerase Rpb2, domain 7 M28_RS00650 PF04998 RNA polymerase Rpb1, domain 5 M28_RS00650 PF04997 RNA polymerase Rpb1, domain 1 M28_RS00650 PF04983 RNA polymerase Rpb1, domain 3 M28_RS00650 PF00623 RNA polymerase Rpb1, domain 2 M28_RS00650 PF05000 RNA polymerase Rpb1, domain 4 M28_RS00660 PF00437 Type II/IV secretion system protein M28_RS00665 PF00482 Type II secretion system (T2SS), protein F M28_RS00670 PF07963 Prokaryotic N-terminal methylation motif M28_RS00700 PF00871 Acetokinase family M28_RS00710 PF03807 NADP oxidoreductase coenzyme F420-dependent M28_RS00710 PF14748 Pyrroline-5-carboxylate reductase dimerisation M28_RS00715 PF05343 M42 glutamyl aminopeptidase M28_RS00730 PF00085 Thioredoxin M28_RS00735 PF01588 Putative tRNA binding domain M28_RS00735 PF14794 Domain of unknown function (DUF4479) M28_RS00740 PF00436 Single-strand binding protein family M28_RS00745 PF01712 Deoxynucleoside kinase M28_RS00750 PF01207 Dihydrouridine synthase (Dus) M28_RS00755 PF01430 Hsp33 protein M28_RS00770 PF17802 Prealbumin-like fold domain M28_RS00770 PF08341 Thioester domain M28_RS00780 PF08341 Thioester domain M28_RS00780 PF17802 Prealbumin-like fold domain M28_RS00795 PF04203 Sortase domain M28_RS00820 PF02667 Short chain fatty acid transporter M28_RS00830 PF02803 Thiolase, C-terminal domain M28_RS00830 PF00108 Thiolase, N-terminal domain M28_RS00835 PF01144 Coenzyme A transferase M28_RS00840 PF01144 Coenzyme A transferase M28_RS00850 PF01042 Endoribonuclease L-PSP M28_RS00865 PF01496 V-type ATPase 116kDa subunit family M28_RS00870 PF00137 ATP synthase subunit C M28_RS00880 PF01992 ATP synthase (C/AC39) subunit M28_RS00885 PF01990 ATP synthase (F/14-kDa) subunit M28_RS00890 PF16886 ATPsynthase alpha/beta subunit N-term extension M28_RS00890 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS00890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS00895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS00895 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS00900 PF01813 ATP synthase subunit D M28_RS00915 PF00709 Adenylosuccinate synthetase M28_RS00920 PF02608 ABC transporter substrate-binding protein PnrA-like M28_RS00925 PF00467 KOW motif M28_RS00925 PF02357 Transcription termination factor nusG M28_RS00940 PF17440 Thiol-activated cytolysin beta sandwich domain M28_RS00940 PF01289 Thiol-activated cytolysin M28_RS00965 PF01053 Cys/Met metabolism PLP-dependent enzyme M28_RS00970 PF13603 Leucyl-tRNA synthetase, Domain 2 M28_RS00970 PF09334 tRNA synthetases class I (M) M28_RS00970 PF08264 Anticodon-binding domain of tRNA M28_RS00970 PF00133 tRNA synthetases class I (I, L, M and V) M28_RS00975 PF03611 PTS system sugar-specific permease component M28_RS00980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS00985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS00990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M28_RS00995 PF01261 Xylose isomerase-like TIM barrel M28_RS01000 PF00596 Class II Aldolase and Adducin N-terminal domain M28_RS01020 PF00005 ABC transporter M28_RS01020 PF00571 CBS domain M28_RS01025 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01030 PF01367 5'-3' exonuclease, C-terminal SAM fold M28_RS01030 PF00476 DNA polymerase family A M28_RS01030 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M28_RS01040 PF01475 Ferric uptake regulator family M28_RS01050 PF01507 Phosphoadenosine phosphosulfate reductase family M28_RS01050 PF11922 Domain of unknown function (DUF3440) M28_RS01055 PF02195 ParB-like nuclease domain M28_RS01075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M28_RS01075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M28_RS01095 PF01702 Queuine tRNA-ribosyltransferase M28_RS01105 PF02632 BioY family M28_RS01110 PF12706 Beta-lactamase superfamily domain M28_RS01115 PF14437 MafB19-like deaminase M28_RS01130 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS01130 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS01135 PF00342 Phosphoglucose isomerase M28_RS01145 PF01694 Rhomboid family M28_RS01150 PF00483 Nucleotidyl transferase M28_RS01155 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M28_RS01155 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M28_RS01165 PF00664 ABC transporter transmembrane region M28_RS01165 PF00005 ABC transporter M28_RS01170 PF00664 ABC transporter transmembrane region M28_RS01170 PF00005 ABC transporter M28_RS01175 PF02677 Epoxyqueuosine reductase QueH M28_RS01180 PF00692 dUTPase M28_RS01185 PF18073 Rubredoxin metal binding domain M28_RS01190 PF00484 Carbonic anhydrase M28_RS01195 PF01987 Mitochondrial biogenesis AIM24 M28_RS01200 PF00749 tRNA synthetases class I (E and Q), catalytic domain M28_RS01205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS01205 PF00989 PAS fold M28_RS01205 PF17203 Single cache domain 3 M28_RS01205 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M28_RS01220 PF00825 Ribonuclease P M28_RS01225 PF02096 60Kd inner membrane protein M28_RS01230 PF01424 R3H domain M28_RS01230 PF14804 Jag N-terminus M28_RS01235 PF00468 Ribosomal protein L34 M28_RS01240 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M28_RS01250 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01255 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01265 PF00701 Dihydrodipicolinate synthetase family M28_RS01270 PF00480 ROK family M28_RS01280 PF01026 TatD related DNase M28_RS01285 PF13331 Domain of unknown function (DUF4093) M28_RS01290 PF00398 Ribosomal RNA adenine dimethylase M28_RS01295 PF16745 RsgA N-terminal domain M28_RS01295 PF03193 RsgA GTPase M28_RS01300 PF00834 Ribulose-phosphate 3 epimerase family M28_RS01305 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain M28_RS01305 PF04263 Thiamin pyrophosphokinase, catalytic domain M28_RS01310 PF02646 RmuC family M28_RS01315 PF01966 HD domain M28_RS01320 PF00156 Phosphoribosyl transferase domain M28_RS01320 PF09182 Bacterial purine repressor, N-terminal M28_RS01330 PF00164 Ribosomal protein S12/S23 M28_RS01335 PF00177 Ribosomal protein S7p/S5e M28_RS01340 PF00679 Elongation factor G C-terminus M28_RS01340 PF14492 Elongation Factor G, domain II M28_RS01340 PF03764 Elongation factor G, domain IV M28_RS01340 PF00009 Elongation factor Tu GTP binding domain M28_RS01340 PF03144 Elongation factor Tu domain 2 M28_RS01345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M28_RS01345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M28_RS01355 PF00005 ABC transporter M28_RS01360 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01370 PF02673 Bacitracin resistance protein BacA M28_RS01375 PF05389 Negative regulator of genetic competence (MecA) M28_RS01380 PF00953 Glycosyl transferase family 4 M28_RS01385 PF00005 ABC transporter M28_RS01390 PF01458 Uncharacterized protein family (UPF0051) M28_RS01395 PF00266 Aminotransferase class-V M28_RS01400 PF01592 NifU-like N terminal domain M28_RS01405 PF01458 Uncharacterized protein family (UPF0051) M28_RS01410 PF07943 Penicillin-binding protein 5, C-terminal domain M28_RS01410 PF00768 D-alanyl-D-alanine carboxypeptidase M28_RS01415 PF07943 Penicillin-binding protein 5, C-terminal domain M28_RS01415 PF00768 D-alanyl-D-alanine carboxypeptidase M28_RS01420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M28_RS01425 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01430 PF12911 N-terminal TM domain of oligopeptide transport permease C M28_RS01430 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M28_RS01435 PF00005 ABC transporter M28_RS01440 PF00005 ABC transporter M28_RS01440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M28_RS01490 PF01926 50S ribosome-binding GTPase M28_RS01495 PF01985 CRS1 / YhbY (CRM) domain M28_RS01500 PF01467 Cytidylyltransferase-like M28_RS01505 PF01966 HD domain M28_RS01515 PF13649 Methyltransferase domain M28_RS01520 PF05636 HIGH Nucleotidyl Transferase M28_RS01530 PF01709 Transcriptional regulator M28_RS01535 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS01540 PF03180 NLPA lipoprotein M28_RS01545 PF00005 ABC transporter M28_RS01545 PF09383 NIL domain M28_RS01550 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS01555 PF05525 Branched-chain amino acid transport protein M28_RS01560 PF00375 Sodium:dicarboxylate symporter family M28_RS01565 PF02254 TrkA-N domain M28_RS01565 PF02080 TrkA-C domain M28_RS01570 PF02386 Cation transport protein M28_RS01575 PF02527 rRNA small subunit methyltransferase G M28_RS01580 PF04011 LemA family M28_RS01585 PF01435 Peptidase family M48 M28_RS01595 PF00072 Response regulator receiver domain M28_RS01595 PF00486 Transcriptional regulatory protein, C terminal M28_RS01600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS01600 PF18719 ArlS sensor domain M28_RS01600 PF00512 His Kinase A (phospho-acceptor) domain M28_RS01605 PF03477 ATP cone domain M28_RS01615 PF07319 Primosomal protein DnaI N-terminus M28_RS01615 PF01695 IstB-like ATP binding protein M28_RS01620 PF01926 50S ribosome-binding GTPase M28_RS01620 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M28_RS01625 PF12419 SNF2 Helicase protein M28_RS01625 PF00271 Helicase conserved C-terminal domain M28_RS01625 PF00176 SNF2 family N-terminal domain M28_RS01635 PF02875 Mur ligase family, glutamate ligase domain M28_RS01635 PF08245 Mur ligase middle domain M28_RS01635 PF01225 Mur ligase family, catalytic domain M28_RS01645 PF02618 YceG-like family M28_RS01650 PF03449 Transcription elongation factor, N-terminal M28_RS01650 PF01272 Transcription elongation factor, GreA/GreB, C-term M28_RS01655 PF02096 60Kd inner membrane protein M28_RS01660 PF00708 Acylphosphatase M28_RS01665 PF08032 RNA 2'-O ribose methyltransferase substrate binding M28_RS01665 PF00588 SpoU rRNA Methylase family M28_RS01675 PF01027 Inhibitor of apoptosis-promoting Bax1 M28_RS01680 PF03672 Uncharacterised protein family (UPF0154) M28_RS01685 PF01177 Asp/Glu/Hydantoin racemase M28_RS01690 PF01725 Ham1 family M28_RS01705 PF00589 Phage integrase family M28_RS01710 PF02616 Segregation and condensation protein ScpA M28_RS01715 PF04079 Segregation and condensation complex subunit ScpB M28_RS01720 PF01479 S4 domain M28_RS01720 PF00849 RNA pseudouridylate synthase M28_RS01725 PF01809 Putative membrane protein insertion efficiency factor M28_RS01730 PF00588 SpoU rRNA Methylase family M28_RS01735 PF12822 ECF transporter, substrate-specific component M28_RS01740 PF01569 PAP2 superfamily M28_RS01745 PF16199 Radical_SAM C-terminal domain M28_RS01745 PF04055 Radical SAM superfamily M28_RS01750 PF06962 Putative rRNA methylase M28_RS01755 PF00571 CBS domain M28_RS01755 PF03471 Transporter associated domain M28_RS01755 PF01595 Cyclin M transmembrane N-terminal domain M28_RS01760 PF04055 Radical SAM superfamily M28_RS01765 PF02833 DHHA2 domain M28_RS01765 PF01368 DHH family M28_RS01775 PF01032 FecCD transport family M28_RS01780 PF01032 FecCD transport family M28_RS01785 PF01497 Periplasmic binding protein M28_RS01790 PF00005 ABC transporter M28_RS01795 PF08245 Mur ligase middle domain M28_RS01795 PF02875 Mur ligase family, glutamate ligase domain M28_RS01800 PF01943 Polysaccharide biosynthesis protein M28_RS01800 PF14667 Polysaccharide biosynthesis C-terminal domain M28_RS01815 PF00574 Clp protease M28_RS01820 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) M28_RS01825 PF02223 Thymidylate kinase M28_RS01830 PF09115 DNA polymerase III, delta subunit, C terminal M28_RS01835 PF06156 Initiation control protein YabA M28_RS01840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M28_RS01850 PF03932 CutC family M28_RS01855 PF03960 ArsC family M28_RS01860 PF03372 Endonuclease/Exonuclease/phosphatase family M28_RS01870 PF01070 FMN-dependent dehydrogenase M28_RS01875 PF06280 Fn3-like domain M28_RS01875 PF00746 LPXTG cell wall anchor motif M28_RS01875 PF02225 PA domain M28_RS01875 PF00082 Subtilase family M28_RS01890 PF09334 tRNA synthetases class I (M) M28_RS01890 PF01588 Putative tRNA binding domain M28_RS01895 PF00268 Ribonucleotide reductase, small chain M28_RS01900 PF07972 NrdI Flavodoxin like M28_RS01905 PF00317 Ribonucleotide reductase, all-alpha domain M28_RS01905 PF08343 Ribonucleotide reductase N-terminal M28_RS01905 PF02867 Ribonucleotide reductase, barrel domain M28_RS01910 PF03496 ADP-ribosyltransferase exoenzyme M28_RS01945 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS01945 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS01975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M28_RS01975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M28_RS01980 PF07690 Major Facilitator Superfamily M28_RS01985 PF12804 MobA-like NTP transferase domain M28_RS01985 PF00132 Bacterial transferase hexapeptide (six repeats) M28_RS01990 PF00293 NUDIX domain M28_RS02000 PF01048 Phosphorylase superfamily M28_RS02015 PF01297 Zinc-uptake complex component A periplasmic M28_RS02020 PF00005 ABC transporter M28_RS02025 PF00950 ABC 3 transport family M28_RS02030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M28_RS02035 PF17854 FtsK alpha domain M28_RS02035 PF01580 FtsK/SpoIIIE family M28_RS02035 PF09397 Ftsk gamma domain M28_RS02045 PF03946 Ribosomal protein L11, N-terminal domain M28_RS02045 PF00298 Ribosomal protein L11, RNA binding domain M28_RS02050 PF00687 Ribosomal protein L1p/L10e family M28_RS02055 PF00696 Amino acid kinase family M28_RS02060 PF01765 Ribosome recycling factor M28_RS02070 PF01625 Peptide methionine sulfoxide reductase M28_RS02075 PF06855 YozE SAM-like fold M28_RS02085 PF06100 MCRA family M28_RS02090 PF02562 PhoH-like protein M28_RS02095 PF03167 Uracil DNA glycosylase superfamily M28_RS02100 PF02130 Uncharacterized protein family UPF0054 M28_RS02105 PF01219 Prokaryotic diacylglycerol kinase M28_RS02110 PF01926 50S ribosome-binding GTPase M28_RS02110 PF07650 KH domain M28_RS02115 PF13344 Haloacid dehalogenase-like hydrolase M28_RS02115 PF00293 NUDIX domain M28_RS02200 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M28_RS02200 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M28_RS02200 PF06827 Zinc finger found in FPG and IleRS M28_RS02205 PF01121 Dephospho-CoA kinase M28_RS02210 PF05872 Bacterial protein of unknown function (DUF853) M28_RS02215 PF00083 Sugar (and other) transporter M28_RS02215 PF07690 Major Facilitator Superfamily M28_RS02220 PF00471 Ribosomal protein L33 M28_RS02230 PF17876 Cold shock domain M28_RS02230 PF08206 Ribonuclease B OB domain M28_RS02230 PF00773 RNB domain M28_RS02230 PF00575 S1 RNA binding domain M28_RS02235 PF01668 SmpB protein M28_RS02245 PF01470 Pyroglutamyl peptidase M28_RS02260 PF00535 Glycosyl transferase family 2 M28_RS02265 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M28_RS02270 PF00881 Nitroreductase family M28_RS02275 PF00557 Metallopeptidase family M24 M28_RS02275 PF01321 Creatinase/Prolidase N-terminal domain M28_RS02280 PF00356 Bacterial regulatory proteins, lacI family M28_RS02285 PF13439 Glycosyltransferase Family 4 M28_RS02285 PF00534 Glycosyl transferases group 1 M28_RS02290 PF00534 Glycosyl transferases group 1 M28_RS02290 PF13439 Glycosyltransferase Family 4 M28_RS02295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M28_RS02295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M28_RS02295 PF02824 TGS domain M28_RS02295 PF03129 Anticodon binding domain M28_RS02300 PF00005 ABC transporter M28_RS02320 PF00108 Thiolase, N-terminal domain M28_RS02320 PF02803 Thiolase, C-terminal domain M28_RS02335 PF00486 Transcriptional regulatory protein, C terminal M28_RS02335 PF00072 Response regulator receiver domain M28_RS02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS02340 PF00672 HAMP domain M28_RS02340 PF00512 His Kinase A (phospho-acceptor) domain M28_RS02340 PF13426 PAS domain M28_RS02345 PF00753 Metallo-beta-lactamase superfamily M28_RS02350 PF14622 Ribonuclease-III-like M28_RS02350 PF00035 Double-stranded RNA binding motif M28_RS02355 PF02463 RecF/RecN/SMC N terminal domain M28_RS02355 PF06470 SMC proteins Flexible Hinge Domain M28_RS02370 PF08501 Shikimate dehydrogenase substrate binding domain M28_RS02370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M28_RS02390 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) M28_RS02410 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M28_RS02410 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M28_RS02410 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M28_RS02475 PF02881 SRP54-type protein, helical bundle domain M28_RS02475 PF00448 SRP54-type protein, GTPase domain M28_RS02480 PF07690 Major Facilitator Superfamily M28_RS02485 PF03123 CAT RNA binding domain M28_RS02485 PF00874 PRD domain M28_RS02490 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M28_RS02490 PF02378 Phosphotransferase system, EIIC M28_RS02490 PF00367 phosphotransferase system, EIIB M28_RS02495 PF00232 Glycosyl hydrolase family 1 M28_RS02500 PF09323 Domain of unknown function (DUF1980) M28_RS02505 PF03773 Predicted permease M28_RS02515 PF16921 Tex protein YqgF-like domain M28_RS02515 PF09371 Tex-like protein N-terminal domain M28_RS02515 PF00575 S1 RNA binding domain M28_RS02515 PF17674 HHH domain M28_RS02520 PF10263 SprT-like family M28_RS02530 PF07475 HPr Serine kinase C-terminal domain M28_RS02530 PF02603 HPr Serine kinase N terminus M28_RS02535 PF01790 Prolipoprotein diacylglyceryl transferase M28_RS02545 PF12732 YtxH-like protein M28_RS02560 PF01136 Peptidase family U32 M28_RS02560 PF16325 Peptidase family U32 C-terminal domain M28_RS02565 PF02229 Transcriptional Coactivator p15 (PC4) M28_RS02570 PF00152 tRNA synthetases class II (D, K and N) M28_RS02570 PF01336 OB-fold nucleic acid binding domain M28_RS02590 PF09515 Thiamine transporter protein (Thia_YuaJ) M28_RS02615 PF08439 Oligopeptidase F M28_RS02615 PF01432 Peptidase family M3 M28_RS02620 PF00311 Phosphoenolpyruvate carboxylase M28_RS02625 PF01098 Cell cycle protein M28_RS02630 PF03144 Elongation factor Tu domain 2 M28_RS02630 PF00009 Elongation factor Tu GTP binding domain M28_RS02630 PF03143 Elongation factor Tu C-terminal domain M28_RS02635 PF00121 Triosephosphate isomerase M28_RS02660 PF01966 HD domain M28_RS02670 PF00690 Cation transporter/ATPase, N-terminus M28_RS02670 PF00689 Cation transporting ATPase, C-terminus M28_RS02675 PF00356 Bacterial regulatory proteins, lacI family M28_RS02685 PF03613 PTS system mannose/fructose/sorbose family IID component M28_RS02690 PF03609 PTS system sorbose-specific iic component M28_RS02695 PF03830 PTS system sorbose subfamily IIB component M28_RS02700 PF07470 Glycosyl Hydrolase Family 88 M28_RS02725 PF01081 KDPG and KHG aldolase M28_RS02730 PF13419 Haloacid dehalogenase-like hydrolase M28_RS02735 PF06874 Firmicute fructose-1,6-bisphosphatase M28_RS02740 PF08331 Domain of unknown function (DUF1730) M28_RS02750 PF00005 ABC transporter M28_RS02755 PF18075 FtsX extracellular domain M28_RS02755 PF02687 FtsX-like permease family M28_RS02760 PF00753 Metallo-beta-lactamase superfamily M28_RS02770 PF00929 Exonuclease M28_RS02770 PF13307 Helicase C-terminal domain M28_RS02770 PF04851 Type III restriction enzyme, res subunit M28_RS02775 PF00155 Aminotransferase class I and II M28_RS02780 PF00152 tRNA synthetases class II (D, K and N) M28_RS02780 PF01336 OB-fold nucleic acid binding domain M28_RS02785 PF03668 P-loop ATPase protein family M28_RS02790 PF01933 Uncharacterised protein family UPF0052 M28_RS02795 PF14527 WhiA LAGLIDADG-like domain M28_RS02795 PF02650 WhiA C-terminal HTH domain M28_RS02795 PF10298 WhiA N-terminal LAGLIDADG-like domain M28_RS02800 PF03577 Peptidase family C69 M28_RS02805 PF01297 Zinc-uptake complex component A periplasmic M28_RS02805 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment M28_RS02810 PF00392 Bacterial regulatory proteins, gntR family M28_RS02810 PF07702 UTRA domain M28_RS02815 PF01380 SIS domain M28_RS02820 PF01197 Ribosomal protein L31 M28_RS02825 PF02272 DHHA1 domain M28_RS02825 PF01368 DHH family M28_RS02830 PF00258 Flavodoxin M28_RS02840 PF00654 Voltage gated chloride channel M28_RS02845 PF01245 Ribosomal protein L19 M28_RS02865 PF00986 DNA gyrase B subunit, carboxyl terminus M28_RS02865 PF01751 Toprim domain M28_RS02865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS02865 PF00204 DNA gyrase B M28_RS02870 PF06160 Septation ring formation regulator, EzrA M28_RS02880 PF00113 Enolase, C-terminal TIM barrel domain M28_RS02880 PF03952 Enolase, N-terminal domain M28_RS02935 PF00005 ABC transporter M28_RS02960 PF06177 QueT transporter M28_RS02965 PF03120 NAD-dependent DNA ligase OB-fold domain M28_RS02965 PF00533 BRCA1 C Terminus (BRCT) domain M28_RS02965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M28_RS02965 PF12826 Helix-hairpin-helix motif M28_RS02965 PF01653 NAD-dependent DNA ligase adenylation domain M28_RS02970 PF00781 Diacylglycerol kinase catalytic domain M28_RS02975 PF00137 ATP synthase subunit C M28_RS02980 PF00119 ATP synthase A chain M28_RS02985 PF00430 ATP synthase B/B' CF(0) M28_RS02990 PF00213 ATP synthase delta (OSCP) subunit M28_RS02995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS02995 PF00306 ATP synthase alpha/beta chain, C terminal domain M28_RS02995 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS03000 PF00231 ATP synthase M28_RS03005 PF02874 ATP synthase alpha/beta family, beta-barrel domain M28_RS03005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M28_RS03010 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M28_RS03010 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M28_RS03020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M28_RS03035 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M28_RS03035 PF01409 tRNA synthetases class II core domain (F) M28_RS03040 PF03147 Ferredoxin-fold anticodon binding domain M28_RS03040 PF03484 tRNA synthetase B5 domain M28_RS03040 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M28_RS03040 PF03483 B3/4 domain M28_RS03040 PF01588 Putative tRNA binding domain M28_RS03055 PF02687 FtsX-like permease family M28_RS03060 PF00005 ABC transporter M28_RS03065 PF04228 Putative neutral zinc metallopeptidase M28_RS03070 PF12705 PD-(D/E)XK nuclease superfamily M28_RS03075 PF12705 PD-(D/E)XK nuclease superfamily M28_RS03075 PF13361 UvrD-like helicase C-terminal domain M28_RS03075 PF00580 UvrD/REP helicase N-terminal domain M28_RS03080 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS03085 PF01165 Ribosomal protein S21 M28_RS03090 PF01741 Large-conductance mechanosensitive channel, MscL M28_RS03095 PF01807 CHC2 zinc finger M28_RS03095 PF08275 DNA primase catalytic core, N-terminal domain M28_RS03095 PF10410 DnaB-helicase binding domain of primase M28_RS03100 PF03979 Sigma-70 factor, region 1.1 M28_RS03100 PF00140 Sigma-70 factor, region 1.2 M28_RS03100 PF04545 Sigma-70, region 4 M28_RS03100 PF04539 Sigma-70 region 3 M28_RS03100 PF04542 Sigma-70 region 2 M28_RS03105 PF01883 Iron-sulfur cluster assembly protein M28_RS03110 PF04321 RmlD substrate binding domain M28_RS03120 PF02709 N-terminal domain of galactosyltransferase M28_RS03120 PF00535 Glycosyl transferase family 2 M28_RS03130 PF00005 ABC transporter M28_RS03135 PF00535 Glycosyl transferase family 2 M28_RS03150 PF00535 Glycosyl transferase family 2 M28_RS03170 PF07687 Peptidase dimerisation domain M28_RS03170 PF01546 Peptidase family M20/M25/M40 M28_RS03190 PF02224 Cytidylate kinase M28_RS03195 PF00707 Translation initiation factor IF-3, C-terminal domain M28_RS03195 PF05198 Translation initiation factor IF-3, N-terminal domain M28_RS03200 PF01632 Ribosomal protein L35 M28_RS03205 PF00453 Ribosomal protein L20 M28_RS03210 PF00884 Sulfatase M28_RS03215 PF17785 PUA-like domain M28_RS03215 PF10672 S-adenosylmethionine-dependent methyltransferase M28_RS03220 PF01487 Type I 3-dehydroquinase M28_RS03225 PF01264 Chorismate synthase M28_RS03230 PF06133 Control of competence regulator ComK, YlbF/YmcA M28_RS03235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M28_RS03235 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS03240 PF02875 Mur ligase family, glutamate ligase domain M28_RS03240 PF08245 Mur ligase middle domain M28_RS03250 PF00266 Aminotransferase class-V M28_RS03255 PF02926 THUMP domain M28_RS03255 PF02568 Thiamine biosynthesis protein (ThiI) M28_RS03260 PF09587 Bacterial capsule synthesis protein PGA_cap M28_RS03265 PF00829 Ribosomal prokaryotic L21 protein M28_RS03275 PF01016 Ribosomal L27 protein M28_RS03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M28_RS03285 PF03466 LysR substrate binding domain M28_RS03290 PF01252 Signal peptidase (SPase) II M28_RS03295 PF00849 RNA pseudouridylate synthase M28_RS03295 PF01479 S4 domain M28_RS03300 PF00156 Phosphoribosyl transferase domain M28_RS03305 PF00860 Permease family M28_RS03310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M28_RS03310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M28_RS03315 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M28_RS03315 PF00117 Glutamine amidotransferase class-I M28_RS03325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M28_RS03325 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M28_RS03325 PF02142 MGS-like domain M28_RS03330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M28_RS03335 PF00005 ABC transporter M28_RS03340 PF12704 MacB-like periplasmic core domain M28_RS03340 PF02687 FtsX-like permease family M28_RS03345 PF03009 Glycerophosphoryl diester phosphodiesterase family M28_RS03350 PF00886 Ribosomal protein S16 M28_RS03380 PF01782 RimM N-terminal domain M28_RS03380 PF05239 PRC-barrel domain M28_RS03385 PF01746 tRNA (Guanine-1)-methyltransferase M28_RS03390 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS03400 PF08546 Ketopantoate reductase PanE/ApbA C terminal M28_RS03400 PF02558 Ketopantoate reductase PanE/ApbA M28_RS03405 PF08220 DeoR-like helix-turn-helix domain M28_RS03405 PF00455 DeoR C terminal sensor domain M28_RS03410 PF00294 pfkB family carbohydrate kinase M28_RS03415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS03415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS03420 PF01476 LysM domain M28_RS03420 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M28_RS03425 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M28_RS03425 PF01476 LysM domain M28_RS03435 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS03435 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS03440 PF09028 Mac 1 M28_RS03445 PF00334 Nucleoside diphosphate kinase M28_RS03455 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS03460 PF12627 Probable RNA and SrmB- binding site of polymerase A M28_RS03460 PF01743 Poly A polymerase head domain M28_RS03460 PF13735 tRNA nucleotidyltransferase domain 2 putative M28_RS03465 PF00005 ABC transporter M28_RS03465 PF16326 ABC transporter C-terminal domain M28_RS03465 PF12848 ABC transporter M28_RS03475 PF01327 Polypeptide deformylase M28_RS03480 PF17936 Bacterial Ig domain M28_RS03480 PF00149 Calcineurin-like phosphoesterase M28_RS03480 PF02872 5'-nucleotidase, C-terminal domain M28_RS03485 PF04607 Region found in RelA / SpoT proteins M28_RS03490 PF00486 Transcriptional regulatory protein, C terminal M28_RS03490 PF00072 Response regulator receiver domain M28_RS03495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS03495 PF00512 His Kinase A (phospho-acceptor) domain M28_RS03500 PF10509 Galactokinase galactose-binding signature M28_RS03500 PF00288 GHMP kinases N terminal domain M28_RS03500 PF08544 GHMP kinases C terminal M28_RS03510 PF00288 GHMP kinases N terminal domain M28_RS03510 PF08544 GHMP kinases C terminal M28_RS03515 PF01070 FMN-dependent dehydrogenase M28_RS03520 PF00368 Hydroxymethylglutaryl-coenzyme A reductase M28_RS03525 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal M28_RS03525 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal M28_RS03530 PF00303 Thymidylate synthase M28_RS03535 PF00186 Dihydrofolate reductase M28_RS03545 PF06689 ClpX C4-type zinc finger M28_RS03545 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS03545 PF07724 AAA domain (Cdc48 subfamily) M28_RS03550 PF01926 50S ribosome-binding GTPase M28_RS03560 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS03560 PF17871 AAA lid domain M28_RS03560 PF07724 AAA domain (Cdc48 subfamily) M28_RS03560 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS03565 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M28_RS03570 PF01676 Metalloenzyme superfamily M28_RS03575 PF03960 ArsC family M28_RS03580 PF01048 Phosphorylase superfamily M28_RS03585 PF01048 Phosphorylase superfamily M28_RS03595 PF03466 LysR substrate binding domain M28_RS03595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M28_RS03605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M28_RS03610 PF00156 Phosphoribosyl transferase domain M28_RS03615 PF01425 Amidase M28_RS03620 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS03625 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS03630 PF03167 Uracil DNA glycosylase superfamily M28_RS03635 PF01979 Amidohydrolase family M28_RS03640 PF02660 Glycerol-3-phosphate acyltransferase M28_RS03645 PF00986 DNA gyrase B subunit, carboxyl terminus M28_RS03645 PF00204 DNA gyrase B M28_RS03645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS03645 PF01751 Toprim domain M28_RS03650 PF00521 DNA gyrase/topoisomerase IV, subunit A M28_RS03650 PF03989 DNA gyrase C-terminal domain, beta-propeller M28_RS03655 PF01063 Amino-transferase class IV M28_RS03675 PF00575 S1 RNA binding domain M28_RS03690 PF12368 Rhodanase C-terminal M28_RS03690 PF17773 UPF0176 acylphosphatase like domain M28_RS03690 PF00581 Rhodanese-like domain M28_RS03720 PF16360 GTP-binding GTPase Middle Region M28_RS03720 PF01926 50S ribosome-binding GTPase M28_RS03720 PF13167 GTP-binding GTPase N-terminal M28_RS03725 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M28_RS03725 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M28_RS03730 PF12706 Beta-lactamase superfamily domain M28_RS03730 PF00753 Metallo-beta-lactamase superfamily M28_RS03735 PF00106 short chain dehydrogenase M28_RS03740 PF01368 DHH family M28_RS03740 PF17768 RecJ OB domain M28_RS03740 PF10141 Single-strand DNA-specific exonuclease, C terminal domain M28_RS03740 PF02272 DHHA1 domain M28_RS03745 PF00156 Phosphoribosyl transferase domain M28_RS03755 PF00730 HhH-GPD superfamily base excision DNA repair protein M28_RS03755 PF10576 Iron-sulfur binding domain of endonuclease III M28_RS03755 PF00633 Helix-hairpin-helix motif M28_RS03760 PF04816 tRNA (adenine(22)-N(1))-methyltransferase M28_RS03765 PF01784 NIF3 (NGG1p interacting factor 3) M28_RS03770 PF01266 FAD dependent oxidoreductase M28_RS03775 PF00483 Nucleotidyl transferase M28_RS03780 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase M28_RS03785 PF16363 GDP-mannose 4,6 dehydratase M28_RS03790 PF00293 NUDIX domain M28_RS03795 PF01594 AI-2E family transporter M28_RS03805 PF05670 NFACT protein RNA binding domain M28_RS03825 PF00005 ABC transporter M28_RS03830 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M28_RS03830 PF00753 Metallo-beta-lactamase superfamily M28_RS03830 PF17770 Ribonuclease J C-terminal domain M28_RS03835 PF00756 Putative esterase M28_RS03845 PF00005 ABC transporter M28_RS03845 PF12848 ABC transporter M28_RS03845 PF16326 ABC transporter C-terminal domain M28_RS03850 PF00676 Dehydrogenase E1 component M28_RS03855 PF02779 Transketolase, pyrimidine binding domain M28_RS03855 PF00364 Biotin-requiring enzyme M28_RS03855 PF02780 Transketolase, C-terminal domain M28_RS03860 PF02817 e3 binding domain M28_RS03860 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M28_RS03860 PF00364 Biotin-requiring enzyme M28_RS03870 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS03870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M28_RS03880 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain M28_RS03880 PF02278 Polysaccharide lyase family 8, super-sandwich domain M28_RS03880 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain M28_RS03885 PF03099 Biotin/lipoate A/B protein ligase family M28_RS03885 PF10437 Bacterial lipoate protein ligase C-terminus M28_RS03890 PF07685 CobB/CobQ-like glutamine amidotransferase domain M28_RS03895 PF08353 Domain of unknown function (DUF1727) M28_RS03895 PF08245 Mur ligase middle domain M28_RS03900 PF02457 DisA bacterial checkpoint controller nucleotide-binding M28_RS03910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M28_RS03910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M28_RS03910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M28_RS03910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M28_RS03920 PF06969 HemN C-terminal domain M28_RS03920 PF04055 Radical SAM superfamily M28_RS03930 PF13344 Haloacid dehalogenase-like hydrolase M28_RS03940 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 M28_RS03940 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 M28_RS03940 PF13395 HNH endonuclease M28_RS03940 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 M28_RS03945 PF01867 CRISPR associated protein Cas1 M28_RS03950 PF09827 CRISPR associated protein Cas2 M28_RS03955 PF09711 CRISPR-associated protein (Cas_Csn2) M28_RS03960 PF01609 Transposase DDE domain M28_RS03960 PF13808 DDE_Tnp_1-associated M28_RS03970 PF03144 Elongation factor Tu domain 2 M28_RS03970 PF14492 Elongation Factor G, domain II M28_RS03970 PF00009 Elongation factor Tu GTP binding domain M28_RS03970 PF00679 Elongation factor G C-terminus M28_RS03970 PF06421 GTP-binding protein LepA C-terminus M28_RS03975 PF02370 M protein repeat M28_RS03975 PF00746 LPXTG cell wall anchor motif M28_RS03980 PF01641 SelR domain M28_RS03985 PF03601 Conserved hypothetical protein 698 M28_RS03995 PF03830 PTS system sorbose subfamily IIB component M28_RS04000 PF03609 PTS system sorbose-specific iic component M28_RS04005 PF03613 PTS system mannose/fructose/sorbose family IID component M28_RS04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS04010 PF06580 Histidine kinase M28_RS04015 PF00072 Response regulator receiver domain M28_RS04015 PF12833 Helix-turn-helix domain M28_RS04025 PF00171 Aldehyde dehydrogenase family M28_RS04030 PF02151 UvrB/uvrC motif M28_RS04030 PF01541 GIY-YIG catalytic domain M28_RS04030 PF08459 UvrC Helix-hairpin-helix N-terminal M28_RS04035 PF00881 Nitroreductase family M28_RS04040 PF01546 Peptidase family M20/M25/M40 M28_RS04045 PF10396 GTP-binding protein TrmE N-terminus M28_RS04045 PF01926 50S ribosome-binding GTPase M28_RS04045 PF12631 MnmE helical domain M28_RS04050 PF00466 Ribosomal protein L10 M28_RS04055 PF16320 Ribosomal protein L7/L12 dimerisation domain M28_RS04055 PF00542 Ribosomal protein L7/L12 C-terminal domain M28_RS04085 PF00072 Response regulator receiver domain M28_RS04085 PF00486 Transcriptional regulatory protein, C terminal M28_RS04090 PF00512 His Kinase A (phospho-acceptor) domain M28_RS04090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS04100 PF00005 ABC transporter M28_RS04105 PF05147 Lanthionine synthetase C-like protein M28_RS04110 PF04738 Lantibiotic dehydratase, N terminus M28_RS04110 PF14028 Lantibiotic biosynthesis dehydratase C-term M28_RS04115 PF00005 ABC transporter M28_RS04130 PF01381 Helix-turn-helix M28_RS04150 PF07943 Penicillin-binding protein 5, C-terminal domain M28_RS04150 PF00768 D-alanyl-D-alanine carboxypeptidase M28_RS04160 PF02875 Mur ligase family, glutamate ligase domain M28_RS04160 PF08245 Mur ligase middle domain M28_RS04165 PF01227 GTP cyclohydrolase I M28_RS04170 PF00809 Pterin binding enzyme M28_RS04175 PF02152 Dihydroneopterin aldolase M28_RS04180 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M28_RS04185 PF01565 FAD binding domain M28_RS04185 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M28_RS04190 PF00005 ABC transporter M28_RS04190 PF08402 TOBE domain M28_RS04195 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04200 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04205 PF13416 Bacterial extracellular solute-binding protein M28_RS04210 PF00072 Response regulator receiver domain M28_RS04215 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M28_RS04215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS04215 PF17203 Single cache domain 3 M28_RS04215 PF00989 PAS fold M28_RS04220 PF03390 2-hydroxycarboxylate transporter family M28_RS04225 PF03949 Malic enzyme, NAD binding domain M28_RS04225 PF00390 Malic enzyme, N-terminal domain M28_RS04230 PF00107 Zinc-binding dehydrogenase M28_RS04230 PF08240 Alcohol dehydrogenase GroES-like domain M28_RS04235 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) M28_RS04240 PF00654 Voltage gated chloride channel M28_RS04250 PF01594 AI-2E family transporter M28_RS04255 PF04002 RadC-like JAB domain M28_RS04260 PF07722 Peptidase C26 M28_RS04265 PF06971 Putative DNA-binding protein N-terminus M28_RS04265 PF02629 CoA binding domain M28_RS04275 PF00266 Aminotransferase class-V M28_RS04280 PF14572 Phosphoribosyl synthetase-associated domain M28_RS04280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M28_RS04290 PF04607 Region found in RelA / SpoT proteins M28_RS04295 PF01513 ATP-NAD kinase M28_RS04300 PF01479 S4 domain M28_RS04300 PF00849 RNA pseudouridylate synthase M28_RS04305 PF01515 Phosphate acetyl/butaryl transferase M28_RS04310 PF00106 short chain dehydrogenase M28_RS04320 PF00571 CBS domain M28_RS04320 PF00005 ABC transporter M28_RS04325 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04330 PF00478 IMP dehydrogenase / GMP reductase domain M28_RS04340 PF00156 Phosphoribosyl transferase domain M28_RS04345 PF00860 Permease family M28_RS04350 PF02424 ApbE family M28_RS04355 PF01361 Tautomerase enzyme M28_RS04360 PF00265 Thymidine kinase M28_RS04365 PF03462 PCRF domain M28_RS04365 PF00472 RF-1 domain M28_RS04370 PF05175 Methyltransferase small domain M28_RS04385 PF00464 Serine hydroxymethyltransferase M28_RS04400 PF00005 ABC transporter M28_RS04400 PF00664 ABC transporter transmembrane region M28_RS04405 PF00005 ABC transporter M28_RS04405 PF00664 ABC transporter transmembrane region M28_RS04410 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS04410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M28_RS04415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M28_RS04415 PF00056 lactate/malate dehydrogenase, NAD binding domain M28_RS04420 PF00521 DNA gyrase/topoisomerase IV, subunit A M28_RS04420 PF03989 DNA gyrase C-terminal domain, beta-propeller M28_RS04425 PF04203 Sortase domain M28_RS04430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M28_RS04445 PF00781 Diacylglycerol kinase catalytic domain M28_RS04450 PF03006 Haemolysin-III related M28_RS04460 PF01926 50S ribosome-binding GTPase M28_RS04465 PF01351 Ribonuclease HII M28_RS04470 PF18255 DNA processing protein A sterile alpha motif domain M28_RS04470 PF02481 DNA recombination-mediator protein A M28_RS04475 PF01131 DNA topoisomerase M28_RS04475 PF01396 Topoisomerase DNA binding C4 zinc finger M28_RS04475 PF01751 Toprim domain M28_RS04495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M28_RS04495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M28_RS04510 PF01134 Glucose inhibited division protein A M28_RS04515 PF02436 Conserved carboxylase domain M28_RS04515 PF00682 HMGL-like M28_RS04515 PF00364 Biotin-requiring enzyme M28_RS04525 PF00364 Biotin-requiring enzyme M28_RS04530 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit M28_RS04535 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase M28_RS04545 PF03600 Citrate transporter M28_RS04555 PF00364 Biotin-requiring enzyme M28_RS04560 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit M28_RS04565 PF06857 Malonate decarboxylase delta subunit (MdcD) M28_RS04570 PF03328 HpcH/HpaI aldolase/citrate lyase family M28_RS04575 PF04223 Citrate lyase, alpha subunit (CitF) M28_RS04580 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase M28_RS04585 PF00682 HMGL-like M28_RS04585 PF00364 Biotin-requiring enzyme M28_RS04585 PF02436 Conserved carboxylase domain M28_RS04590 PF08218 Citrate lyase ligase C-terminal domain M28_RS04600 PF13495 Phage integrase, N-terminal SAM-like domain M28_RS04600 PF00589 Phage integrase family M28_RS04610 PF02881 SRP54-type protein, helical bundle domain M28_RS04610 PF02978 Signal peptide binding domain M28_RS04610 PF00448 SRP54-type protein, GTPase domain M28_RS04615 PF04297 Putative helix-turn-helix protein, YlxM / p13 like M28_RS04620 PF00392 Bacterial regulatory proteins, gntR family M28_RS04620 PF07702 UTRA domain M28_RS04630 PF02540 NAD synthase M28_RS04630 PF00117 Glutamine amidotransferase class-I M28_RS04630 PF00958 GMP synthase C terminal domain M28_RS04640 PF00005 ABC transporter M28_RS04640 PF12848 ABC transporter M28_RS04650 PF08543 Phosphomethylpyrimidine kinase M28_RS04650 PF02581 Thiamine monophosphate synthase M28_RS04655 PF00155 Aminotransferase class I and II M28_RS04655 PF00392 Bacterial regulatory proteins, gntR family M28_RS04660 PF03477 ATP cone domain M28_RS04660 PF13597 Anaerobic ribonucleoside-triphosphate reductase M28_RS04665 PF13091 PLD-like domain M28_RS04670 PF01268 Formate--tetrahydrofolate ligase M28_RS04675 PF10437 Bacterial lipoate protein ligase C-terminus M28_RS04675 PF03099 Biotin/lipoate A/B protein ligase family M28_RS04685 PF01661 Macro domain M28_RS04690 PF01597 Glycine cleavage H-protein M28_RS04695 PF00296 Luciferase-like monooxygenase M28_RS04700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M28_RS04705 PF03099 Biotin/lipoate A/B protein ligase family M28_RS04710 PF04127 DNA / pantothenate metabolism flavoprotein M28_RS04710 PF02441 Flavoprotein M28_RS04715 PF02441 Flavoprotein M28_RS04720 PF12822 ECF transporter, substrate-specific component M28_RS04725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M28_RS04725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M28_RS04725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M28_RS04725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M28_RS04730 PF02653 Branched-chain amino acid transport system / permease component M28_RS04735 PF02653 Branched-chain amino acid transport system / permease component M28_RS04740 PF00005 ABC transporter M28_RS04745 PF02608 ABC transporter substrate-binding protein PnrA-like M28_RS04750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M28_RS04755 PF05175 Methyltransferase small domain M28_RS04760 PF00485 Phosphoribulokinase / Uridine kinase family M28_RS04765 PF01649 Ribosomal protein S20 M28_RS04770 PF00512 His Kinase A (phospho-acceptor) domain M28_RS04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS04775 PF00072 Response regulator receiver domain M28_RS04775 PF00486 Transcriptional regulatory protein, C terminal M28_RS04780 PF11838 ERAP1-like C-terminal domain M28_RS04780 PF01433 Peptidase family M1 domain M28_RS04790 PF01895 PhoU domain M28_RS04795 PF00005 ABC transporter M28_RS04800 PF00005 ABC transporter M28_RS04805 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04810 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04815 PF12849 PBP superfamily domain M28_RS04820 PF01189 16S rRNA methyltransferase RsmB/F M28_RS04820 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF M28_RS04820 PF17126 RsmF rRNA methyltransferase first C-terminal domain M28_RS04825 PF00459 Inositol monophosphatase family M28_RS04830 PF05256 Uncharacterised protein family (UPF0223) M28_RS04835 PF03960 ArsC family M28_RS04840 PF01687 Riboflavin kinase M28_RS04840 PF06574 FAD synthetase M28_RS04845 PF16198 tRNA pseudouridylate synthase B C-terminal domain M28_RS04845 PF01509 TruB family pseudouridylate synthase (N terminal domain) M28_RS04870 PF12704 MacB-like periplasmic core domain M28_RS04870 PF00005 ABC transporter M28_RS04870 PF02687 FtsX-like permease family M28_RS04885 PF03780 Asp23 family, cell envelope-related function M28_RS04890 PF05532 CsbD-like M28_RS04895 PF03780 Asp23 family, cell envelope-related function M28_RS04915 PF00580 UvrD/REP helicase N-terminal domain M28_RS04915 PF13361 UvrD-like helicase C-terminal domain M28_RS04920 PF01235 Sodium:alanine symporter family M28_RS04925 PF01545 Cation efflux family M28_RS04925 PF16916 Dimerisation domain of Zinc Transporter M28_RS04930 PF07373 CAMP factor (Cfa) M28_RS04935 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS04940 PF00005 ABC transporter M28_RS04945 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS04950 PF03831 PhnA domain M28_RS04950 PF08274 PhnA Zinc-Ribbon M28_RS04955 PF01380 SIS domain M28_RS04960 PF10502 Signal peptidase, peptidase S26 M28_RS04965 PF02887 Pyruvate kinase, alpha/beta domain M28_RS04965 PF00224 Pyruvate kinase, barrel domain M28_RS04970 PF00365 Phosphofructokinase M28_RS04975 PF14579 Helix-hairpin-helix motif M28_RS04975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M28_RS04975 PF07733 Bacterial DNA polymerase III alpha NTPase domain M28_RS04975 PF01336 OB-fold nucleic acid binding domain M28_RS04975 PF02811 PHP domain M28_RS04980 PF00392 Bacterial regulatory proteins, gntR family M28_RS04985 PF00005 ABC transporter M28_RS05015 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS05015 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS05170 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system M28_RS05245 PF00270 DEAD/DEAH box helicase M28_RS05245 PF00271 Helicase conserved C-terminal domain M28_RS05355 PF00343 Carbohydrate phosphorylase M28_RS05360 PF02446 4-alpha-glucanotransferase M28_RS05365 PF00356 Bacterial regulatory proteins, lacI family M28_RS05365 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M28_RS05370 PF13416 Bacterial extracellular solute-binding protein M28_RS05375 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05380 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05385 PF00356 Bacterial regulatory proteins, lacI family M28_RS05395 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05400 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS05405 PF00128 Alpha amylase, catalytic domain M28_RS05405 PF01833 IPT/TIG domain M28_RS05405 PF00686 Starch binding domain M28_RS05410 PF02903 Alpha amylase, N-terminal ig-like domain M28_RS05410 PF00128 Alpha amylase, catalytic domain M28_RS05415 PF13416 Bacterial extracellular solute-binding protein M28_RS05425 PF00934 PE family M28_RS05425 PF07859 alpha/beta hydrolase fold M28_RS05430 PF04914 DltD protein M28_RS05435 PF00550 Phosphopantetheine attachment site M28_RS05440 PF03062 MBOAT, membrane-bound O-acyltransferase family M28_RS05445 PF00501 AMP-binding enzyme M28_RS05445 PF13193 AMP-binding enzyme C-terminal domain M28_RS05455 PF00271 Helicase conserved C-terminal domain M28_RS05455 PF04851 Type III restriction enzyme, res subunit M28_RS05455 PF02151 UvrB/uvrC motif M28_RS05455 PF12344 Ultra-violet resistance protein B M28_RS05455 PF17757 UvrB interaction domain M28_RS05460 PF00497 Bacterial extracellular solute-binding proteins, family 3 M28_RS05465 PF00005 ABC transporter M28_RS05470 PF02378 Phosphotransferase system, EIIC M28_RS05480 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M28_RS05485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS05490 PF00874 PRD domain M28_RS05490 PF05043 Mga helix-turn-helix domain M28_RS05490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS05490 PF08279 HTH domain M28_RS05500 PF00232 Glycosyl hydrolase family 1 M28_RS05515 PF01018 GTP1/OBG M28_RS05515 PF01926 50S ribosome-binding GTPase M28_RS05515 PF09269 Domain of unknown function (DUF1967) M28_RS05530 PF00849 RNA pseudouridylate synthase M28_RS05530 PF01479 S4 domain M28_RS05540 PF07690 Major Facilitator Superfamily M28_RS05545 PF08903 Domain of unknown function (DUF1846) M28_RS05565 PF02796 Helix-turn-helix domain of resolvase M28_RS05565 PF00239 Resolvase, N terminal domain M28_RS05585 PF17841 BID domain of Bartonella effector protein (Bep) M28_RS05585 PF03389 MobA/MobL family M28_RS05585 PF01443 Viral (Superfamily 1) RNA helicase M28_RS05630 PF01938 TRAM domain M28_RS05630 PF05958 tRNA (Uracil-5-)-methyltransferase M28_RS05635 PF03816 Cell envelope-related transcriptional attenuator domain M28_RS05640 PF01202 Shikimate kinase M28_RS05645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M28_RS05655 PF00557 Metallopeptidase family M24 M28_RS05660 PF07085 DRTGG domain M28_RS05660 PF03061 Thioesterase superfamily M28_RS05660 PF00392 Bacterial regulatory proteins, gntR family M28_RS05660 PF00571 CBS domain M28_RS05665 PF13302 Acetyltransferase (GNAT) domain M28_RS05670 PF17573 GA-like domain M28_RS05670 PF01378 B domain M28_RS05670 PF01378 B domain M28_RS05670 PF00746 LPXTG cell wall anchor motif M28_RS05670 PF00746 LPXTG cell wall anchor motif M28_RS05670 PF17573 GA-like domain M28_RS05675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M28_RS05680 PF02773 S-adenosylmethionine synthetase, C-terminal domain M28_RS05680 PF00438 S-adenosylmethionine synthetase, N-terminal domain M28_RS05680 PF02772 S-adenosylmethionine synthetase, central domain M28_RS05690 PF02237 Biotin protein ligase C terminal domain M28_RS05690 PF08279 HTH domain M28_RS05690 PF03099 Biotin/lipoate A/B protein ligase family M28_RS05700 PF01609 Transposase DDE domain M28_RS05700 PF13808 DDE_Tnp_1-associated M28_RS05705 PF12169 DNA polymerase III subunits gamma and tau domain III M28_RS05710 PF13185 GAF domain M28_RS05725 PF00485 Phosphoribulokinase / Uridine kinase family M28_RS05730 PF00270 DEAD/DEAH box helicase M28_RS05730 PF00271 Helicase conserved C-terminal domain M28_RS05735 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain M28_RS05735 PF01522 Polysaccharide deacetylase M28_RS05740 PF00171 Aldehyde dehydrogenase family M28_RS05745 PF00391 PEP-utilising enzyme, mobile domain M28_RS05745 PF02896 PEP-utilising enzyme, TIM barrel domain M28_RS05745 PF05524 PEP-utilising enzyme, N-terminal M28_RS05750 PF00381 PTS HPr component phosphorylation site M28_RS05755 PF00462 Glutaredoxin M28_RS05760 PF00317 Ribonucleotide reductase, all-alpha domain M28_RS05760 PF08343 Ribonucleotide reductase N-terminal M28_RS05760 PF02867 Ribonucleotide reductase, barrel domain M28_RS05765 PF00268 Ribonucleotide reductase, small chain M28_RS05790 PF01381 Helix-turn-helix M28_RS05795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M28_RS05795 PF02272 DHHA1 domain M28_RS05795 PF01411 tRNA synthetases class II (A) M28_RS05800 PF13145 PPIC-type PPIASE domain M28_RS05805 PF01596 O-methyltransferase M28_RS05810 PF07690 Major Facilitator Superfamily M28_RS05815 PF01432 Peptidase family M3 M28_RS05815 PF08439 Oligopeptidase F M28_RS05825 PF00849 RNA pseudouridylate synthase M28_RS05825 PF01479 S4 domain M28_RS05830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M28_RS05835 PF02547 Queuosine biosynthesis protein M28_RS05860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M28_RS05860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M28_RS05875 PF10531 SLBB domain M28_RS05880 PF01553 Acyltransferase M28_RS05885 PF05175 Methyltransferase small domain M28_RS05890 PF01541 GIY-YIG catalytic domain M28_RS05895 PF02705 K+ potassium transporter M28_RS05900 PF00271 Helicase conserved C-terminal domain M28_RS05900 PF00270 DEAD/DEAH box helicase M28_RS05905 PF16658 Class II release factor RF3, C-terminal domain M28_RS05905 PF03144 Elongation factor Tu domain 2 M28_RS05905 PF00009 Elongation factor Tu GTP binding domain M28_RS05920 PF08245 Mur ligase middle domain M28_RS05920 PF01225 Mur ligase family, catalytic domain M28_RS05920 PF02875 Mur ligase family, glutamate ligase domain M28_RS05925 PF01820 D-ala D-ala ligase N-terminus M28_RS05925 PF07478 D-ala D-ala ligase C-terminus M28_RS05930 PF13662 Toprim domain M28_RS05930 PF02132 RecR protein M28_RS05935 PF00905 Penicillin binding protein transpeptidase domain M28_RS05935 PF03717 Penicillin-binding Protein dimerisation domain M28_RS05940 PF01226 Formate/nitrite transporter M28_RS05950 PF02829 3H domain M28_RS05950 PF08279 HTH domain M28_RS05955 PF00300 Histidine phosphatase superfamily (branch 1) M28_RS05960 PF01180 Dihydroorotate dehydrogenase M28_RS05970 PF00216 Bacterial DNA-binding protein M28_RS05980 PF13472 GDSL-like Lipase/Acylhydrolase family M28_RS05985 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS05995 PF13476 AAA domain M28_RS06000 PF02863 Arginine repressor, C-terminal domain M28_RS06000 PF01316 Arginine repressor, DNA binding domain M28_RS06005 PF01479 S4 domain M28_RS06005 PF01728 FtsJ-like methyltransferase M28_RS06010 PF00348 Polyprenyl synthetase M28_RS06015 PF02609 Exonuclease VII small subunit M28_RS06020 PF02601 Exonuclease VII, large subunit M28_RS06020 PF13742 OB-fold nucleic acid binding domain M28_RS06025 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M28_RS06025 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M28_RS06030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M28_RS06030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M28_RS06030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M28_RS06030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M28_RS06035 PF00875 DNA photolyase M28_RS06035 PF03441 FAD binding domain of DNA photolyase M28_RS06040 PF00005 ABC transporter M28_RS06045 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS06050 PF08796 Protein of unknown function (DUF1797) M28_RS06055 PF17871 AAA lid domain M28_RS06055 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS06055 PF07724 AAA domain (Cdc48 subfamily) M28_RS06055 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS06060 PF00293 NUDIX domain M28_RS06070 PF00133 tRNA synthetases class I (I, L, M and V) M28_RS06070 PF08264 Anticodon-binding domain of tRNA M28_RS06075 PF05103 DivIVA protein M28_RS06080 PF01479 S4 domain M28_RS06080 PF17774 Putative RNA-binding domain in YlmH M28_RS06090 PF04472 Cell division protein SepF M28_RS06095 PF01168 Alanine racemase, N-terminal domain M28_RS06100 PF00091 Tubulin/FtsZ family, GTPase domain M28_RS06100 PF12327 FtsZ family, C-terminal domain M28_RS06105 PF02491 SHS2 domain inserted in FTSA M28_RS06105 PF11983 Membrane-attachment and polymerisation-promoting switch M28_RS06110 PF08478 POTRA domain, FtsQ-type M28_RS06115 PF03033 Glycosyltransferase family 28 N-terminal domain M28_RS06115 PF04101 Glycosyltransferase family 28 C-terminal domain M28_RS06120 PF08245 Mur ligase middle domain M28_RS06120 PF02875 Mur ligase family, glutamate ligase domain M28_RS06130 PF00679 Elongation factor G C-terminus M28_RS06130 PF00009 Elongation factor Tu GTP binding domain M28_RS06130 PF03144 Elongation factor Tu domain 2 M28_RS06130 PF14492 Elongation Factor G, domain II M28_RS06135 PF00581 Rhodanese-like domain M28_RS06140 PF00480 ROK family M28_RS06150 PF00210 Ferritin-like domain M28_RS06160 PF04055 Radical SAM superfamily M28_RS06165 PF06265 Protein of unknown function (DUF1027) M28_RS06170 PF00356 Bacterial regulatory proteins, lacI family M28_RS06175 PF13180 PDZ domain M28_RS06175 PF05362 Lon protease (S16) C-terminal proteolytic domain M28_RS06180 PF01467 Cytidylyltransferase-like M28_RS06190 PF03590 Aspartate-ammonia ligase M28_RS06195 PF00696 Amino acid kinase family M28_RS06200 PF01546 Peptidase family M20/M25/M40 M28_RS06205 PF03606 C4-dicarboxylate anaerobic carrier M28_RS06210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M28_RS06210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M28_RS06215 PF13673 Acetyltransferase (GNAT) domain M28_RS06230 PF02863 Arginine repressor, C-terminal domain M28_RS06230 PF01316 Arginine repressor, DNA binding domain M28_RS06245 PF06580 Histidine kinase M28_RS06245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS06245 PF02743 Cache domain M28_RS06245 PF00672 HAMP domain M28_RS06250 PF00072 Response regulator receiver domain M28_RS06250 PF12833 Helix-turn-helix domain M28_RS06270 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS06285 PF08460 Bacterial SH3 domain M28_RS06285 PF01520 N-acetylmuramoyl-L-alanine amidase M28_RS06285 PF05257 CHAP domain M28_RS06430 PF02195 ParB-like nuclease domain M28_RS06490 PF05866 Endodeoxyribonuclease RusA M28_RS06500 PF00436 Single-strand binding protein family M28_RS06530 PF07261 Replication initiation and membrane attachment M28_RS06565 PF10548 P22AR C-terminal domain M28_RS06565 PF08346 AntA/AntB antirepressor M28_RS06575 PF01381 Helix-turn-helix M28_RS06595 PF01641 SelR domain M28_RS06595 PF01625 Peptide methionine sulfoxide reductase M28_RS06600 PF08534 Redoxin M28_RS06605 PF02683 Cytochrome C biogenesis protein transmembrane region M28_RS06610 PF09827 CRISPR associated protein Cas2 M28_RS06615 PF01867 CRISPR associated protein Cas1 M28_RS06645 PF08264 Anticodon-binding domain of tRNA M28_RS06645 PF00133 tRNA synthetases class I (I, L, M and V) M28_RS06645 PF10458 Valyl tRNA synthetase tRNA binding arm M28_RS06675 PF13808 DDE_Tnp_1-associated M28_RS06675 PF01609 Transposase DDE domain M28_RS06795 PF18652 Adhesin P1 N-terminal domain M28_RS06795 PF17998 Cell surface antigen I/II C2 terminal domain M28_RS06795 PF16364 Cell surface antigen C-terminus M28_RS06795 PF08363 Glucan-binding protein C M28_RS06795 PF06696 Streptococcal surface antigen repeat M28_RS06820 PF01381 Helix-turn-helix M28_RS06850 PF04650 YSIRK type signal peptide M28_RS06850 PF00746 LPXTG cell wall anchor motif M28_RS06850 PF17480 AlphaC C-terminal M28_RS06850 PF08829 Alpha C protein N terminal M28_RS06855 PF12833 Helix-turn-helix domain M28_RS06860 PF00793 DAHP synthetase I family M28_RS06860 PF01817 Chorismate mutase type II M28_RS06865 PF01761 3-dehydroquinate synthase M28_RS06880 PF13649 Methyltransferase domain M28_RS06885 PF08501 Shikimate dehydrogenase substrate binding domain M28_RS06885 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M28_RS06890 PF16355 Domain of unknown function (DUF4982) M28_RS06890 PF00703 Glycosyl hydrolases family 2 M28_RS06890 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M28_RS06890 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M28_RS06890 PF02837 Glycosyl hydrolases family 2, sugar binding domain M28_RS06895 PF12833 Helix-turn-helix domain M28_RS06895 PF00072 Response regulator receiver domain M28_RS06900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS06900 PF06580 Histidine kinase M28_RS06900 PF00672 HAMP domain M28_RS06900 PF02743 Cache domain M28_RS06910 PF12010 Domain of unknown function (DUF3502) M28_RS06915 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS06920 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS06925 PF00480 ROK family M28_RS06935 PF00232 Glycosyl hydrolase family 1 M28_RS06940 PF07555 beta-N-acetylglucosaminidase M28_RS06940 PF02838 Glycosyl hydrolase family 20, domain 2 M28_RS06945 PF00392 Bacterial regulatory proteins, gntR family M28_RS06955 PF09261 Alpha mannosidase middle domain M28_RS06955 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain M28_RS06955 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 M28_RS06955 PF07748 Glycosyl hydrolases family 38 C-terminal domain M28_RS06955 PF01074 Glycosyl hydrolases family 38 N-terminal domain M28_RS06965 PF05958 tRNA (Uracil-5-)-methyltransferase M28_RS06965 PF01938 TRAM domain M28_RS06970 PF02631 RecX family M28_RS06975 PF04167 Protein of unknown function (DUF402) M28_RS07055 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M28_RS07055 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus M28_RS07065 PF04851 Type III restriction enzyme, res subunit M28_RS07065 PF00271 Helicase conserved C-terminal domain M28_RS07070 PF09186 Domain of unknown function (DUF1949) M28_RS07070 PF01205 Uncharacterized protein family UPF0029 M28_RS07075 PF00291 Pyridoxal-phosphate dependent enzyme M28_RS07080 PF00575 S1 RNA binding domain M28_RS07085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M28_RS07090 PF00072 Response regulator receiver domain M28_RS07090 PF00196 Bacterial regulatory proteins, luxR family M28_RS07095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS07095 PF00672 HAMP domain M28_RS07095 PF07730 Histidine kinase M28_RS07105 PF03793 PASTA domain M28_RS07105 PF00069 Protein kinase domain M28_RS07115 PF01029 NusB family M28_RS07115 PF01189 16S rRNA methyltransferase RsmB/F M28_RS07120 PF02911 Formyl transferase, C-terminal domain M28_RS07120 PF00551 Formyl transferase M28_RS07125 PF04851 Type III restriction enzyme, res subunit M28_RS07125 PF00271 Helicase conserved C-terminal domain M28_RS07125 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M28_RS07125 PF18074 Primosomal protein N C-terminal domain M28_RS07125 PF17764 3′ DNA-binding domain (3′BD) M28_RS07130 PF01192 RNA polymerase Rpb6 M28_RS07135 PF00625 Guanylate kinase M28_RS07140 PF01966 HD domain M28_RS07140 PF00013 KH domain M28_RS07140 PF12072 Domain of unknown function (DUF3552) M28_RS07145 PF03466 LysR substrate binding domain M28_RS07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M28_RS07150 PF02803 Thiolase, C-terminal domain M28_RS07150 PF00108 Thiolase, N-terminal domain M28_RS07155 PF01144 Coenzyme A transferase M28_RS07160 PF01144 Coenzyme A transferase M28_RS07175 PF02664 S-Ribosylhomocysteinase (LuxS) M28_RS07180 PF18708 MapZ extracellular C-terminal domain 2 M28_RS07180 PF18041 MapZ extracellular domain 1 M28_RS07185 PF01170 Putative RNA methylase family UPF0020 M28_RS07185 PF02926 THUMP domain M28_RS07195 PF05103 DivIVA protein M28_RS07200 PF06908 YspA SLOG family M28_RS07205 PF03838 Recombination protein U M28_RS07210 PF00905 Penicillin binding protein transpeptidase domain M28_RS07210 PF00912 Transglycosylase M28_RS07215 PF03051 Peptidase C1-like family M28_RS07220 PF02540 NAD synthase M28_RS07225 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain M28_RS07225 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M28_RS07225 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M28_RS07230 PF00324 Amino acid permease M28_RS07235 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS07245 PF00005 ABC transporter M28_RS07250 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS07255 PF00271 Helicase conserved C-terminal domain M28_RS07255 PF00270 DEAD/DEAH box helicase M28_RS07260 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M28_RS07260 PF00953 Glycosyl transferase family 4 M28_RS07265 PF00905 Penicillin binding protein transpeptidase domain M28_RS07265 PF03717 Penicillin-binding Protein dimerisation domain M28_RS07265 PF03793 PASTA domain M28_RS07275 PF01795 MraW methylase family M28_RS07285 PF00171 Aldehyde dehydrogenase family M28_RS07290 PF00696 Amino acid kinase family M28_RS07300 PF00005 ABC transporter M28_RS07310 PF00456 Transketolase, thiamine diphosphate binding domain M28_RS07310 PF02779 Transketolase, pyrimidine binding domain M28_RS07310 PF02780 Transketolase, C-terminal domain M28_RS07315 PF00923 Transaldolase/Fructose-6-phosphate aldolase M28_RS07325 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS07325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M28_RS07330 PF00230 Major intrinsic protein M28_RS07335 PF01266 FAD dependent oxidoreductase M28_RS07335 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M28_RS07340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M28_RS07340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M28_RS07345 PF03413 Peptidase propeptide and YPEB domain M28_RS07350 PF05979 Bacterial protein of unknown function (DUF896) M28_RS07355 PF02092 Glycyl-tRNA synthetase beta subunit M28_RS07360 PF02091 Glycyl-tRNA synthetase alpha subunit M28_RS07370 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family M28_RS07375 PF00248 Aldo/keto reductase family M28_RS07380 PF01979 Amidohydrolase family M28_RS07385 PF02690 Na+/Pi-cotransporter M28_RS07395 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS07400 PF00440 Bacterial regulatory proteins, tetR family M28_RS07410 PF03458 UPF0126 domain M28_RS07415 PF01791 DeoC/LacD family aldolase M28_RS07425 PF02502 Ribose/Galactose Isomerase M28_RS07430 PF02502 Ribose/Galactose Isomerase M28_RS07450 PF00455 DeoR C terminal sensor domain M28_RS07450 PF08220 DeoR-like helix-turn-helix domain M28_RS07465 PF00403 Heavy-metal-associated domain M28_RS07470 PF03965 Penicillinase repressor M28_RS07475 PF07859 alpha/beta hydrolase fold M28_RS07480 PF02033 Ribosome-binding factor A M28_RS07485 PF11987 Translation-initiation factor 2 M28_RS07485 PF00009 Elongation factor Tu GTP binding domain M28_RS07485 PF04760 Translation initiation factor IF-2, N-terminal region M28_RS07490 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family M28_RS07495 PF04296 Protein of unknown function (DUF448) M28_RS07500 PF08529 NusA N-terminal domain M28_RS07500 PF13184 NusA-like KH domain M28_RS07500 PF00575 S1 RNA binding domain M28_RS07505 PF02576 RimP N-terminal domain M28_RS07505 PF17384 RimP C-terminal SH3 domain M28_RS07515 PF02390 Putative methyltransferase M28_RS07525 PF05975 Bacterial ABC transporter protein EcsB M28_RS07530 PF00005 ABC transporter M28_RS07535 PF01230 HIT domain M28_RS07545 PF03816 Cell envelope-related transcriptional attenuator domain M28_RS07555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M28_RS07560 PF00860 Permease family M28_RS07570 PF03610 PTS system fructose IIA component M28_RS07570 PF03830 PTS system sorbose subfamily IIB component M28_RS07575 PF03609 PTS system sorbose-specific iic component M28_RS07580 PF03613 PTS system mannose/fructose/sorbose family IID component M28_RS07590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M28_RS07590 PF02403 Seryl-tRNA synthetase N-terminal domain M28_RS07595 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M28_RS07600 PF01039 Carboxyl transferase domain M28_RS07600 PF17848 Acetyl-coA carboxylase zinc finger domain M28_RS07605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M28_RS07605 PF02785 Biotin carboxylase C-terminal domain M28_RS07605 PF00289 Biotin carboxylase, N-terminal domain M28_RS07610 PF07977 FabA-like domain M28_RS07615 PF00364 Biotin-requiring enzyme M28_RS07620 PF00109 Beta-ketoacyl synthase, N-terminal domain M28_RS07620 PF02801 Beta-ketoacyl synthase, C-terminal domain M28_RS07630 PF00698 Acyl transferase domain M28_RS07635 PF03060 Nitronate monooxygenase M28_RS07640 PF00550 Phosphopantetheine attachment site M28_RS07645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M28_RS07645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M28_RS07655 PF00378 Enoyl-CoA hydratase/isomerase M28_RS07660 PF00684 DnaJ central domain M28_RS07660 PF01556 DnaJ C terminal domain M28_RS07660 PF00226 DnaJ domain M28_RS07665 PF00012 Hsp70 protein M28_RS07670 PF01025 GrpE M28_RS07675 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding M28_RS07675 PF01628 HrcA protein C terminal domain M28_RS07690 PF00300 Histidine phosphatase superfamily (branch 1) M28_RS07695 PF04226 Transglycosylase associated protein M28_RS07705 PF02637 GatB domain M28_RS07705 PF02934 GatB/GatE catalytic domain M28_RS07710 PF01425 Amidase M28_RS07715 PF02686 Glu-tRNAGln amidotransferase C subunit M28_RS07730 PF00857 Isochorismatase family M28_RS07735 PF06018 CodY GAF-like domain M28_RS07735 PF08222 CodY helix-turn-helix domain M28_RS07740 PF00155 Aminotransferase class I and II M28_RS07755 PF17763 Glutaminase/Asparaginase C-terminal domain M28_RS07755 PF00710 Asparaginase, N-terminal M28_RS07765 PF00005 ABC transporter M28_RS07770 PF17191 RecG wedge domain M28_RS07770 PF00270 DEAD/DEAH box helicase M28_RS07770 PF00271 Helicase conserved C-terminal domain M28_RS07780 PF00005 ABC transporter M28_RS07795 PF00664 ABC transporter transmembrane region M28_RS07795 PF00005 ABC transporter M28_RS07800 PF00005 ABC transporter M28_RS07800 PF00664 ABC transporter transmembrane region M28_RS07805 PF00005 ABC transporter M28_RS07810 PF01032 FecCD transport family M28_RS07815 PF01497 Periplasmic binding protein M28_RS07830 PF05257 CHAP domain M28_RS07830 PF01476 LysM domain M28_RS07835 PF00842 Alanine racemase, C-terminal domain M28_RS07835 PF01168 Alanine racemase, N-terminal domain M28_RS07840 PF01648 4'-phosphopantetheinyl transferase superfamily M28_RS07845 PF07516 SecA Wing and Scaffold domain M28_RS07845 PF01043 SecA preprotein cross-linking domain M28_RS07845 PF07517 SecA DEAD-like domain M28_RS07845 PF02810 SEC-C motif M28_RS07850 PF01238 Phosphomannose isomerase type I M28_RS07855 PF00480 ROK family M28_RS07865 PF00367 phosphotransferase system, EIIB M28_RS07865 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M28_RS07865 PF02378 Phosphotransferase system, EIIC M28_RS07870 PF08244 Glycosyl hydrolases family 32 C terminal M28_RS07870 PF00251 Glycosyl hydrolases family 32 N-terminal domain M28_RS07875 PF00356 Bacterial regulatory proteins, lacI family M28_RS07880 PF01029 NusB family M28_RS07885 PF03780 Asp23 family, cell envelope-related function M28_RS07890 PF09285 Elongation factor P, C-terminal M28_RS07890 PF08207 Elongation factor P (EF-P) KOW-like domain M28_RS07890 PF01132 Elongation factor P (EF-P) OB domain M28_RS07895 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M28_RS07900 PF00557 Metallopeptidase family M24 M28_RS07900 PF01321 Creatinase/Prolidase N-terminal domain M28_RS07905 PF17755 UvrA DNA-binding domain M28_RS07905 PF00005 ABC transporter M28_RS07905 PF17760 UvrA interaction domain M28_RS07920 PF01084 Ribosomal protein S18 M28_RS07925 PF00436 Single-strand binding protein family M28_RS07930 PF01250 Ribosomal protein S6 M28_RS07940 PF00730 HhH-GPD superfamily base excision DNA repair protein M28_RS07940 PF14815 NUDIX domain M28_RS07950 PF00085 Thioredoxin M28_RS07960 PF01713 Smr domain M28_RS07960 PF00488 MutS domain V M28_RS07975 PF01351 Ribonuclease HII M28_RS07975 PF11858 Domain of unknown function (DUF3378) M28_RS07980 PF10502 Signal peptidase, peptidase S26 M28_RS07985 PF14490 Helix-hairpin-helix containing domain M28_RS07985 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain M28_RS07985 PF13538 UvrD-like helicase C-terminal domain M28_RS07995 PF11799 impB/mucB/samB family C-terminal domain M28_RS07995 PF00817 impB/mucB/samB family M28_RS07995 PF11798 IMS family HHH motif M28_RS08000 PF01228 Glycine radical M28_RS08000 PF02901 Pyruvate formate lyase-like M28_RS08005 PF00144 Beta-lactamase M28_RS08020 PF00230 Major intrinsic protein M28_RS08030 PF07690 Major Facilitator Superfamily M28_RS08035 PF13545 Crp-like helix-turn-helix domain M28_RS08040 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain M28_RS08040 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal M28_RS08040 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M28_RS08055 PF02575 YbaB/EbfC DNA-binding family M28_RS08060 PF07739 TipAS antibiotic-recognition domain M28_RS08060 PF13411 MerR HTH family regulatory protein M28_RS08065 PF01336 OB-fold nucleic acid binding domain M28_RS08065 PF11490 DNA polymerase III polC-type N-terminus II M28_RS08065 PF07733 Bacterial DNA polymerase III alpha NTPase domain M28_RS08065 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M28_RS08065 PF14579 Helix-hairpin-helix motif M28_RS08065 PF02811 PHP domain M28_RS08065 PF00929 Exonuclease M28_RS08070 PF08279 HTH domain M28_RS08070 PF04394 Protein of unknown function, DUF536 M28_RS08100 PF01791 DeoC/LacD family aldolase M28_RS08105 PF01773 Na+ dependent nucleoside transporter N-terminus M28_RS08105 PF07662 Na+ dependent nucleoside transporter C-terminus M28_RS08105 PF07670 Nucleoside recognition M28_RS08110 PF01048 Phosphorylase superfamily M28_RS08120 PF00253 Ribosomal protein S14p/S29e M28_RS08125 PF00814 Glycoprotease family M28_RS08130 PF00583 Acetyltransferase (GNAT) family M28_RS08135 PF00814 Glycoprotease family M28_RS08140 PF07288 Protein of unknown function (DUF1447) M28_RS08145 PF00753 Metallo-beta-lactamase superfamily M28_RS08145 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M28_RS08145 PF17770 Ribonuclease J C-terminal domain M28_RS08150 PF00120 Glutamine synthetase, catalytic domain M28_RS08150 PF03951 Glutamine synthetase, beta-Grasp domain M28_RS08155 PF13411 MerR HTH family regulatory protein M28_RS08165 PF00162 Phosphoglycerate kinase M28_RS08170 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) M28_RS08180 PF02734 DAK2 domain M28_RS08180 PF13684 Dihydroxyacetone kinase family M28_RS08185 PF03780 Asp23 family, cell envelope-related function M28_RS08190 PF00830 Ribosomal L28 family M28_RS08195 PF01116 Fructose-bisphosphate aldolase class-II M28_RS08210 PF06418 CTP synthase N-terminus M28_RS08210 PF00117 Glutamine amidotransferase class-I M28_RS08215 PF05066 HB1, ASXL, restriction endonuclease HTH domain M28_RS08220 PF05698 Bacterial trigger factor protein (TF) C-terminus M28_RS08220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M28_RS08220 PF05697 Bacterial trigger factor protein (TF) M28_RS08225 PF00924 Mechanosensitive ion channel M28_RS08230 PF04260 Protein of unknown function (DUF436) M28_RS08235 PF07155 ECF-type riboflavin transporter, S component M28_RS08240 PF08543 Phosphomethylpyrimidine kinase M28_RS08245 PF01416 tRNA pseudouridine synthase M28_RS08285 PF02595 Glycerate kinase family M28_RS08290 PF18766 SWI2/SNF2 ATPase M28_RS08290 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M28_RS08290 PF12008 Type I restriction and modification enzyme - subunit R C terminal M28_RS08300 PF12161 HsdM N-terminal domain M28_RS08300 PF02384 N-6 DNA Methylase M28_RS08320 PF02687 FtsX-like permease family M28_RS08325 PF00005 ABC transporter M28_RS08330 PF00005 ABC transporter M28_RS08330 PF00664 ABC transporter transmembrane region M28_RS08340 PF04604 Type-A lantibiotic M28_RS08345 PF00232 Glycosyl hydrolase family 1 M28_RS08350 PF02378 Phosphotransferase system, EIIC M28_RS08350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS08355 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M28_RS08360 PF01791 DeoC/LacD family aldolase M28_RS08365 PF00294 pfkB family carbohydrate kinase M28_RS08370 PF02502 Ribose/Galactose Isomerase M28_RS08375 PF02502 Ribose/Galactose Isomerase M28_RS08380 PF08220 DeoR-like helix-turn-helix domain M28_RS08380 PF00455 DeoR C terminal sensor domain M28_RS08400 PF00380 Ribosomal protein S9/S16 M28_RS08405 PF00572 Ribosomal protein L13 M28_RS08410 PF01381 Helix-turn-helix M28_RS08420 PF02645 Uncharacterised protein, DegV family COG1307 M28_RS08430 PF00588 SpoU rRNA Methylase family M28_RS08430 PF08032 RNA 2'-O ribose methyltransferase substrate binding M28_RS08440 PF00636 Ribonuclease III domain M28_RS08445 PF09190 DALR domain M28_RS08445 PF01406 tRNA synthetases class I (C) catalytic domain M28_RS08460 PF06426 Serine acetyltransferase, N-terminal M28_RS08460 PF00132 Bacterial transferase hexapeptide (six repeats) M28_RS08470 PF00575 S1 RNA binding domain M28_RS08470 PF03725 3' exoribonuclease family, domain 2 M28_RS08470 PF01138 3' exoribonuclease family, domain 1 M28_RS08470 PF00013 KH domain M28_RS08470 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M28_RS08475 PF00923 Transaldolase/Fructose-6-phosphate aldolase M28_RS08480 PF03611 PTS system sugar-specific permease component M28_RS08485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS08490 PF05043 Mga helix-turn-helix domain M28_RS08490 PF08279 HTH domain M28_RS08490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M28_RS08490 PF00874 PRD domain M28_RS08490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS08495 PF00312 Ribosomal protein S15 M28_RS08510 PF01327 Polypeptide deformylase M28_RS08515 PF03358 NADPH-dependent FMN reductase M28_RS08520 PF01047 MarR family M28_RS08525 PF00929 Exonuclease M28_RS08525 PF14480 DNA polymerase III polC-type N-terminus I M28_RS08525 PF11490 DNA polymerase III polC-type N-terminus II M28_RS08525 PF07733 Bacterial DNA polymerase III alpha NTPase domain M28_RS08525 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M28_RS08525 PF14579 Helix-hairpin-helix motif M28_RS08525 PF02811 PHP domain M28_RS08530 PF03129 Anticodon binding domain M28_RS08530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M28_RS08530 PF04073 Aminoacyl-tRNA editing domain M28_RS08535 PF13180 PDZ domain M28_RS08535 PF02163 Peptidase family M50 M28_RS08545 PF01255 Putative undecaprenyl diphosphate synthase M28_RS08550 PF02699 Preprotein translocase subunit M28_RS08560 PF00128 Alpha amylase, catalytic domain M28_RS08560 PF17999 Pullulanase N1-terminal domain M28_RS08560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M28_RS08570 PF00128 Alpha amylase, catalytic domain M28_RS08575 PF17912 MalK OB fold domain M28_RS08575 PF00005 ABC transporter M28_RS08575 PF03459 TOBE domain M28_RS08580 PF13556 PucR C-terminal helix-turn-helix domain M28_RS08585 PF02821 Staphylokinase/Streptokinase family M28_RS08590 PF02580 D-Tyr-tRNA(Tyr) deacylase M28_RS08595 PF02824 TGS domain M28_RS08595 PF04607 Region found in RelA / SpoT proteins M28_RS08595 PF13291 ACT domain M28_RS08600 PF04650 YSIRK type signal peptide M28_RS08600 PF00746 LPXTG cell wall anchor motif M28_RS08605 PF07972 NrdI Flavodoxin like M28_RS08610 PF03372 Endonuclease/Exonuclease/phosphatase family M28_RS08615 PF02378 Phosphotransferase system, EIIC M28_RS08615 PF00367 phosphotransferase system, EIIB M28_RS08615 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M28_RS08620 PF04452 RNA methyltransferase M28_RS08635 PF04715 Anthranilate synthase component I, N terminal region M28_RS08635 PF00425 chorismate binding enzyme M28_RS08640 PF00117 Glutamine amidotransferase class-I M28_RS08645 PF16193 AAA C-terminal domain M28_RS08645 PF12002 MgsA AAA+ ATPase C terminal M28_RS08645 PF05496 Holliday junction DNA helicase RuvB P-loop domain M28_RS08670 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain M28_RS08670 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain M28_RS08675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M28_RS08680 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS08685 PF00528 Binding-protein-dependent transport system inner membrane component M28_RS08690 PF00005 ABC transporter M28_RS08690 PF12558 ATP-binding cassette cobalt transporter M28_RS08695 PF00005 ABC transporter M28_RS08700 PF05532 CsbD-like M28_RS08710 PF01297 Zinc-uptake complex component A periplasmic M28_RS08715 PF01609 Transposase DDE domain M28_RS08715 PF13808 DDE_Tnp_1-associated M28_RS08725 PF02225 PA domain M28_RS08725 PF06280 Fn3-like domain M28_RS08725 PF00082 Subtilase family M28_RS08735 PF04650 YSIRK type signal peptide M28_RS08735 PF02370 M protein repeat M28_RS08735 PF00746 LPXTG cell wall anchor motif M28_RS08740 PF04650 YSIRK type signal peptide M28_RS08740 PF00746 LPXTG cell wall anchor motif M28_RS08745 PF08280 M protein trans-acting positive regulator (MGA) HTH domain M28_RS08745 PF05043 Mga helix-turn-helix domain M28_RS08745 PF08270 M protein trans-acting positive regulator (MGA) PRD domain M28_RS08760 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M28_RS08760 PF05257 CHAP domain M28_RS08765 PF00512 His Kinase A (phospho-acceptor) domain M28_RS08765 PF02702 Osmosensitive K+ channel His kinase sensor domain M28_RS08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M28_RS08765 PF13493 Domain of unknown function (DUF4118) M28_RS08770 PF00486 Transcriptional regulatory protein, C terminal M28_RS08770 PF00072 Response regulator receiver domain M28_RS08775 PF02687 FtsX-like permease family M28_RS08775 PF12704 MacB-like periplasmic core domain M28_RS08780 PF00005 ABC transporter M28_RS08815 PF13145 PPIC-type PPIASE domain M28_RS08830 PF01640 Peptidase C10 family M28_RS08830 PF13734 Spi protease inhibitor M28_RS08855 PF04608 Phosphatidylglycerophosphatase A M28_RS08860 PF00465 Iron-containing alcohol dehydrogenase M28_RS08865 PF00923 Transaldolase/Fructose-6-phosphate aldolase M28_RS08870 PF01228 Glycine radical M28_RS08870 PF02901 Pyruvate formate lyase-like M28_RS08875 PF02378 Phosphotransferase system, EIIC M28_RS08880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M28_RS08885 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M28_RS08890 PF04198 Putative sugar-binding domain M28_RS08895 PF08220 DeoR-like helix-turn-helix domain M28_RS08895 PF00455 DeoR C terminal sensor domain M28_RS08900 PF04055 Radical SAM superfamily M28_RS08915 PF00471 Ribosomal protein L33 M28_RS08920 PF00912 Transglycosylase M28_RS08920 PF00905 Penicillin binding protein transpeptidase domain M28_RS08935 PF01479 S4 domain M28_RS08935 PF00849 RNA pseudouridylate synthase M28_RS08945 PF03577 Peptidase family C69 M28_RS08960 PF00118 TCP-1/cpn60 chaperonin family M28_RS08965 PF00166 Chaperonin 10 Kd subunit M28_RS08970 PF00004 ATPase family associated with various cellular activities (AAA) M28_RS08970 PF17871 AAA lid domain M28_RS08970 PF07724 AAA domain (Cdc48 subfamily) M28_RS08970 PF02861 Clp amino terminal domain, pathogenicity island component M28_RS08970 PF10431 C-terminal, D2-small domain, of ClpB protein M28_RS08975 PF17727 CtsR C-terminal dimerization domain M28_RS08975 PF05848 CtsR N-terminal HTH domain M28_RS08980 PF00313 'Cold-shock' DNA-binding domain M28_RS08990 PF00578 AhpC/TSA family M28_RS08995 PF07992 Pyridine nucleotide-disulphide oxidoreductase M28_RS08995 PF13192 Thioredoxin domain M28_RS09000 PF01979 Amidohydrolase family M28_RS09005 PF01175 Urocanase Rossmann-like domain M28_RS09005 PF17392 Urocanase C-terminal domain M28_RS09005 PF17391 Urocanase N-terminal domain M28_RS09010 PF07837 Formiminotransferase domain, N-terminal subdomain M28_RS09010 PF02971 Formiminotransferase domain M28_RS09015 PF04961 Formiminotransferase-cyclodeaminase M28_RS09020 PF01268 Formate--tetrahydrofolate ligase M28_RS09030 PF13520 Amino acid permease M28_RS09035 PF00221 Aromatic amino acid lyase M28_RS09040 PF00491 Arginase family M28_RS09050 PF00318 Ribosomal protein S2 M28_RS09055 PF00889 Elongation factor TS M28_RS09060 PF05649 Peptidase family M13 M28_RS09060 PF01431 Peptidase family M13 M28_RS09065 PF16657 Maltogenic Amylase, C-terminal domain M28_RS09065 PF00128 Alpha amylase, catalytic domain M28_RS09070 PF00367 phosphotransferase system, EIIB M28_RS09070 PF02378 Phosphotransferase system, EIIC M28_RS09075 PF00392 Bacterial regulatory proteins, gntR family M28_RS09075 PF07702 UTRA domain M28_RS09090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M28_RS09095 PF03883 Peroxide stress protein YaaA M28_RS09110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M28_RS09115 PF13597 Anaerobic ribonucleoside-triphosphate reductase M28_RS09115 PF03477 ATP cone domain M28_RS09125 PF06949 Protein of unknown function (DUF1292) M28_RS09130 PF03652 Holliday junction resolvase M28_RS09135 PF06135 IreB regulatory phosphoprotein M28_RS09140 PF03960 ArsC family M28_RS09145 PF00154 recA bacterial DNA recombination protein M28_RS09150 PF02464 Competence-damaged protein M28_RS09150 PF18146 Damage-inducible protein CinA KH domain M28_RS09150 PF00994 Probable molybdopterin binding domain M28_RS09155 PF13673 Acetyltransferase (GNAT) domain M28_RS09155 PF13302 Acetyltransferase (GNAT) domain M28_RS09155 PF03352 Methyladenine glycosylase M28_RS09155 PF00958 GMP synthase C terminal domain M28_RS09155 PF00117 Glutamine amidotransferase class-I M28_RS09160 PF01330 RuvA N terminal domain M28_RS09160 PF07499 RuvA, C-terminal domain M28_RS09170 PF08676 MutL C terminal dimerisation domain M28_RS09170 PF01119 DNA mismatch repair protein, C-terminal domain M28_RS09175 PF14659 Phage integrase, N-terminal SAM-like domain M28_RS09175 PF00589 Phage integrase family M28_RS09290 PF00488 MutS domain V M28_RS09290 PF05192 MutS domain III M28_RS09290 PF01624 MutS domain I M28_RS09290 PF05190 MutS family domain IV M28_RS09290 PF05188 MutS domain II M28_RS09300 PF02863 Arginine repressor, C-terminal domain M28_RS09300 PF01316 Arginine repressor, DNA binding domain M28_RS09305 PF03485 Arginyl tRNA synthetase N terminal domain M28_RS09305 PF00750 tRNA synthetases class I (R) M28_RS09305 PF05746 DALR anticodon binding domain M28_RS09315 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M28_RS09315 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09320 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09320 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M28_RS09325 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09325 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M28_RS09330 PF01336 OB-fold nucleic acid binding domain M28_RS09330 PF02938 GAD domain M28_RS09330 PF00152 tRNA synthetases class II (D, K and N) M28_RS09335 PF13393 Histidyl-tRNA synthetase M28_RS09335 PF03129 Anticodon binding domain M28_RS09340 PF01783 Ribosomal L32p protein family M28_RS09345 PF00471 Ribosomal protein L33 M28_RS09360 PF01022 Bacterial regulatory protein, arsR family M28_RS09390 PF00293 NUDIX domain M28_RS09395 PF03551 Transcriptional regulator PadR-like family M28_RS09530 PF00589 Phage integrase family M28_RS09530 PF14659 Phage integrase, N-terminal SAM-like domain M28_RS09535 PF01479 S4 domain M28_RS09535 PF00163 Ribosomal protein S4/S9 N-terminal domain M28_RS09545 PF00772 DnaB-like helicase N terminal domain M28_RS09545 PF03796 DnaB-like helicase C terminal domain M28_RS09550 PF03948 Ribosomal protein L9, C-terminal domain M28_RS09550 PF01281 Ribosomal protein L9, N-terminal domain M28_RS09555 PF02272 DHHA1 domain M28_RS09555 PF01368 DHH family M28_RS09560 PF13932 GidA associated domain M28_RS09560 PF01134 Glucose inhibited division protein A M28_RS09575 PF03315 Serine dehydratase beta chain M28_RS09575 PF01842 ACT domain M28_RS09580 PF03313 Serine dehydratase alpha chain M28_RS09585 PF06737 Transglycosylase-like domain M28_RS09590 PF02361 Cobalt transport protein M28_RS09595 PF00005 ABC transporter M28_RS09600 PF00005 ABC transporter M28_RS09605 PF01066 CDP-alcohol phosphatidyltransferase M28_RS09615 PF05193 Peptidase M16 inactive domain M28_RS09615 PF00675 Insulinase (Peptidase family M16) M28_RS09630 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M28_RS09630 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M28_RS09630 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M28_RS09635 PF00483 Nucleotidyl transferase M28_RS09645 PF02463 RecF/RecN/SMC N terminal domain M28_RS09650 PF06800 Sugar transport protein M28_RS09655 PF00571 CBS domain M28_RS09655 PF00478 IMP dehydrogenase / GMP reductase domain M28_RS09660 PF00579 tRNA synthetases class I (W and Y) M28_RS09665 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M28_RS09665 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M28_RS09670 PF12848 ABC transporter M28_RS09670 PF00005 ABC transporter M28_RS09700 PF02590 Predicted SPOUT methyltransferase M28_RS09705 PF13180 PDZ domain M28_RS09710 PF17762 HTH domain found in ParB protein M28_RS09710 PF02195 ParB-like nuclease domain