locus-tag class description SD89_RS00005 PF02195 ParB-like nuclease domain SD89_RS00005 PF17762 HTH domain found in ParB protein SD89_RS00010 PF00308 Bacterial dnaA protein SD89_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix SD89_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain SD89_RS00015 PF02767 DNA polymerase III beta subunit, central domain SD89_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain SD89_RS00025 PF01926 50S ribosome-binding GTPase SD89_RS00025 PF06071 Protein of unknown function (DUF933) SD89_RS00030 PF01195 Peptidyl-tRNA hydrolase SD89_RS00035 PF17757 UvrB interaction domain SD89_RS00035 PF03461 TRCF domain SD89_RS00035 PF00271 Helicase conserved C-terminal domain SD89_RS00035 PF00270 DEAD/DEAH box helicase SD89_RS00035 PF02559 CarD-like/TRCF domain SD89_RS00040 PF01479 S4 domain SD89_RS00055 PF01171 PP-loop family SD89_RS00060 PF00156 Phosphoribosyl transferase domain SD89_RS00065 PF06480 FtsH Extracellular SD89_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SD89_RS00065 PF01434 Peptidase family M41 SD89_RS00065 PF17862 AAA+ lid domain SD89_RS00070 PF13520 Amino acid permease SD89_RS00245 PF05257 CHAP domain SD89_RS00245 PF01476 LysM domain SD89_RS00250 PF14572 Phosphoribosyl synthetase-associated domain SD89_RS00250 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SD89_RS00255 PF11967 Recombination protein O N terminal SD89_RS00255 PF02565 Recombination protein O C terminal SD89_RS00260 PF02504 Fatty acid synthesis protein SD89_RS00265 PF00550 Phosphopantetheine attachment site SD89_RS00270 PF01259 SAICAR synthetase SD89_RS00275 PF00586 AIR synthase related protein, N-terminal domain SD89_RS00275 PF02769 AIR synthase related protein, C-terminal domain SD89_RS00275 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SD89_RS00280 PF13537 Glutamine amidotransferase domain SD89_RS00280 PF00156 Phosphoribosyl transferase domain SD89_RS00285 PF00586 AIR synthase related protein, N-terminal domain SD89_RS00285 PF02769 AIR synthase related protein, C-terminal domain SD89_RS00290 PF00551 Formyl transferase SD89_RS00295 PF01808 AICARFT/IMPCHase bienzyme SD89_RS00295 PF02142 MGS-like domain SD89_RS00305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SD89_RS00305 PF02844 Phosphoribosylglycinamide synthetase, N domain SD89_RS00305 PF02843 Phosphoribosylglycinamide synthetase, C domain SD89_RS00310 PF00731 AIR carboxylase SD89_RS00315 PF02222 ATP-grasp domain SD89_RS00315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SD89_RS00315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SD89_RS00325 PF10397 Adenylosuccinate lyase C-terminus SD89_RS00325 PF00206 Lyase SD89_RS00335 PF05491 RuvB C-terminal winged helix domain SD89_RS00335 PF05496 Holliday junction DNA helicase RuvB P-loop domain SD89_RS00335 PF17864 RuvB AAA lid domain SD89_RS00340 PF01451 Low molecular weight phosphotyrosine protein phosphatase SD89_RS00350 PF01757 Acyltransferase family SD89_RS00355 PF00465 Iron-containing alcohol dehydrogenase SD89_RS00355 PF00171 Aldehyde dehydrogenase family SD89_RS00360 PF08240 Alcohol dehydrogenase GroES-like domain SD89_RS00360 PF00107 Zinc-binding dehydrogenase SD89_RS00365 PF01554 MatE SD89_RS00370 PF00338 Ribosomal protein S10p/S20e SD89_RS00375 PF00297 Ribosomal protein L3 SD89_RS00380 PF00573 Ribosomal protein L4/L1 family SD89_RS00385 PF00276 Ribosomal protein L23 SD89_RS00390 PF00181 Ribosomal Proteins L2, RNA binding domain SD89_RS00390 PF03947 Ribosomal Proteins L2, C-terminal domain SD89_RS00395 PF00203 Ribosomal protein S19 SD89_RS00400 PF00237 Ribosomal protein L22p/L17e SD89_RS00405 PF00189 Ribosomal protein S3, C-terminal domain SD89_RS00405 PF07650 KH domain SD89_RS00410 PF00252 Ribosomal protein L16p/L10e SD89_RS00415 PF00831 Ribosomal L29 protein SD89_RS00420 PF00366 Ribosomal protein S17 SD89_RS00425 PF00238 Ribosomal protein L14p/L23e SD89_RS00430 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SD89_RS00430 PF00467 KOW motif SD89_RS00435 PF00281 Ribosomal protein L5 SD89_RS00435 PF00673 ribosomal L5P family C-terminus SD89_RS00440 PF00253 Ribosomal protein S14p/S29e SD89_RS00445 PF00410 Ribosomal protein S8 SD89_RS00450 PF00347 Ribosomal protein L6 SD89_RS00455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SD89_RS00460 PF03719 Ribosomal protein S5, C-terminal domain SD89_RS00460 PF00333 Ribosomal protein S5, N-terminal domain SD89_RS00465 PF00327 Ribosomal protein L30p/L7e SD89_RS00470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SD89_RS00475 PF00344 SecY translocase SD89_RS00485 PF01176 Translation initiation factor 1A / IF-1 SD89_RS00490 PF00416 Ribosomal protein S13/S18 SD89_RS00495 PF00411 Ribosomal protein S11 SD89_RS00500 PF01000 RNA polymerase Rpb3/RpoA insert domain SD89_RS00500 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SD89_RS00500 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SD89_RS00505 PF01196 Ribosomal protein L17 SD89_RS00595 PF08544 GHMP kinases C terminal SD89_RS00595 PF00288 GHMP kinases N terminal domain SD89_RS00600 PF00288 GHMP kinases N terminal domain SD89_RS00600 PF08544 GHMP kinases C terminal SD89_RS00605 PF01047 MarR family SD89_RS00610 PF00005 ABC transporter SD89_RS00615 PF00950 ABC 3 transport family SD89_RS00625 PF01479 S4 domain SD89_RS00625 PF00579 tRNA synthetases class I (W and Y) SD89_RS00630 PF00912 Transglycosylase SD89_RS00630 PF00905 Penicillin binding protein transpeptidase domain SD89_RS00635 PF04563 RNA polymerase beta subunit SD89_RS00635 PF04560 RNA polymerase Rpb2, domain 7 SD89_RS00635 PF04561 RNA polymerase Rpb2, domain 2 SD89_RS00635 PF10385 RNA polymerase beta subunit external 1 domain SD89_RS00635 PF04565 RNA polymerase Rpb2, domain 3 SD89_RS00635 PF00562 RNA polymerase Rpb2, domain 6 SD89_RS00640 PF04998 RNA polymerase Rpb1, domain 5 SD89_RS00640 PF04997 RNA polymerase Rpb1, domain 1 SD89_RS00640 PF00623 RNA polymerase Rpb1, domain 2 SD89_RS00640 PF04983 RNA polymerase Rpb1, domain 3 SD89_RS00640 PF05000 RNA polymerase Rpb1, domain 4 SD89_RS00650 PF00437 Type II/IV secretion system protein SD89_RS00655 PF00482 Type II secretion system (T2SS), protein F SD89_RS00660 PF07963 Prokaryotic N-terminal methylation motif SD89_RS00690 PF00871 Acetokinase family SD89_RS00700 PF14748 Pyrroline-5-carboxylate reductase dimerisation SD89_RS00700 PF03807 NADP oxidoreductase coenzyme F420-dependent SD89_RS00705 PF05343 M42 glutamyl aminopeptidase SD89_RS00715 PF00085 Thioredoxin SD89_RS00720 PF14794 Domain of unknown function (DUF4479) SD89_RS00720 PF01588 Putative tRNA binding domain SD89_RS00725 PF00436 Single-strand binding protein family SD89_RS00730 PF01712 Deoxynucleoside kinase SD89_RS00735 PF01207 Dihydrouridine synthase (Dus) SD89_RS00740 PF01430 Hsp33 protein SD89_RS00755 PF08341 Thioester domain SD89_RS00755 PF17802 Prealbumin-like fold domain SD89_RS00765 PF08341 Thioester domain SD89_RS00765 PF17802 Prealbumin-like fold domain SD89_RS00775 PF12892 Spy0128-like isopeptide containing domain SD89_RS00780 PF04203 Sortase domain SD89_RS00805 PF02667 Short chain fatty acid transporter SD89_RS00810 PF03466 LysR substrate binding domain SD89_RS00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD89_RS00815 PF00108 Thiolase, N-terminal domain SD89_RS00815 PF02803 Thiolase, C-terminal domain SD89_RS00820 PF01144 Coenzyme A transferase SD89_RS00825 PF01144 Coenzyme A transferase SD89_RS00835 PF01042 Endoribonuclease L-PSP SD89_RS00850 PF01496 V-type ATPase 116kDa subunit family SD89_RS00855 PF00137 ATP synthase subunit C SD89_RS00865 PF01992 ATP synthase (C/AC39) subunit SD89_RS00870 PF01990 ATP synthase (F/14-kDa) subunit SD89_RS00875 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD89_RS00875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD89_RS00875 PF16886 ATPsynthase alpha/beta subunit N-term extension SD89_RS00880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD89_RS00880 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD89_RS00885 PF01813 ATP synthase subunit D SD89_RS00900 PF00709 Adenylosuccinate synthetase SD89_RS00905 PF02608 ABC transporter substrate-binding protein PnrA-like SD89_RS00910 PF02357 Transcription termination factor nusG SD89_RS00910 PF00467 KOW motif SD89_RS00925 PF17440 Thiol-activated cytolysin beta sandwich domain SD89_RS00925 PF01289 Thiol-activated cytolysin SD89_RS00945 PF01053 Cys/Met metabolism PLP-dependent enzyme SD89_RS00950 PF09334 tRNA synthetases class I (M) SD89_RS00950 PF13603 Leucyl-tRNA synthetase, Domain 2 SD89_RS00950 PF00133 tRNA synthetases class I (I, L, M and V) SD89_RS00950 PF08264 Anticodon-binding domain of tRNA SD89_RS00955 PF03611 PTS system sugar-specific permease component SD89_RS00960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD89_RS00965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD89_RS00970 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SD89_RS00975 PF01261 Xylose isomerase-like TIM barrel SD89_RS00980 PF00596 Class II Aldolase and Adducin N-terminal domain SD89_RS00995 PF00571 CBS domain SD89_RS00995 PF00005 ABC transporter SD89_RS01000 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS01005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SD89_RS01005 PF00476 DNA polymerase family A SD89_RS01005 PF01367 5'-3' exonuclease, C-terminal SAM fold SD89_RS01015 PF01475 Ferric uptake regulator family SD89_RS01025 PF11922 Domain of unknown function (DUF3440) SD89_RS01025 PF01507 Phosphoadenosine phosphosulfate reductase family SD89_RS01030 PF02195 ParB-like nuclease domain SD89_RS01040 PF13333 Integrase core domain SD89_RS01040 PF13276 HTH-like domain SD89_RS01040 PF00665 Integrase core domain SD89_RS01045 PF00665 Integrase core domain SD89_RS01045 PF13276 HTH-like domain SD89_RS01045 PF13333 Integrase core domain SD89_RS01060 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SD89_RS01060 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SD89_RS01065 PF13333 Integrase core domain SD89_RS01065 PF00665 Integrase core domain SD89_RS01065 PF13276 HTH-like domain SD89_RS01080 PF01702 Queuine tRNA-ribosyltransferase SD89_RS01085 PF02632 BioY family SD89_RS01090 PF12706 Beta-lactamase superfamily domain SD89_RS01095 PF14437 MafB19-like deaminase SD89_RS01105 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD89_RS01105 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD89_RS01110 PF00342 Phosphoglucose isomerase SD89_RS01120 PF13808 DDE_Tnp_1-associated SD89_RS01120 PF01609 Transposase DDE domain SD89_RS01130 PF01694 Rhomboid family SD89_RS01135 PF00483 Nucleotidyl transferase SD89_RS01140 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SD89_RS01140 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SD89_RS01150 PF00005 ABC transporter SD89_RS01150 PF00664 ABC transporter transmembrane region SD89_RS01155 PF00005 ABC transporter SD89_RS01155 PF00664 ABC transporter transmembrane region SD89_RS01160 PF02677 Epoxyqueuosine reductase QueH SD89_RS01165 PF00692 dUTPase SD89_RS01170 PF18073 Rubredoxin metal binding domain SD89_RS01175 PF00484 Carbonic anhydrase SD89_RS01180 PF01987 Mitochondrial biogenesis AIM24 SD89_RS01185 PF00749 tRNA synthetases class I (E and Q), catalytic domain SD89_RS01190 PF17203 Single cache domain 3 SD89_RS01190 PF00989 PAS fold SD89_RS01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS01190 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SD89_RS01205 PF00825 Ribonuclease P SD89_RS01210 PF02096 60Kd inner membrane protein SD89_RS01215 PF14804 Jag N-terminus SD89_RS01215 PF01424 R3H domain SD89_RS01220 PF00468 Ribosomal protein L34 SD89_RS01225 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SD89_RS01235 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS01240 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS01255 PF00701 Dihydrodipicolinate synthetase family SD89_RS01260 PF00480 ROK family SD89_RS01270 PF01026 TatD related DNase SD89_RS01275 PF13331 Domain of unknown function (DUF4093) SD89_RS01280 PF00398 Ribosomal RNA adenine dimethylase SD89_RS01285 PF03193 RsgA GTPase SD89_RS01285 PF16745 RsgA N-terminal domain SD89_RS01290 PF00834 Ribulose-phosphate 3 epimerase family SD89_RS01295 PF04263 Thiamin pyrophosphokinase, catalytic domain SD89_RS01295 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SD89_RS01300 PF02646 RmuC family SD89_RS01305 PF01966 HD domain SD89_RS01310 PF09182 Bacterial purine repressor, N-terminal SD89_RS01310 PF00156 Phosphoribosyl transferase domain SD89_RS01320 PF00164 Ribosomal protein S12/S23 SD89_RS01325 PF00177 Ribosomal protein S7p/S5e SD89_RS01330 PF03764 Elongation factor G, domain IV SD89_RS01330 PF00679 Elongation factor G C-terminus SD89_RS01330 PF03144 Elongation factor Tu domain 2 SD89_RS01330 PF00009 Elongation factor Tu GTP binding domain SD89_RS01330 PF14492 Elongation Factor G, domain II SD89_RS01335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SD89_RS01335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD89_RS01340 PF00005 ABC transporter SD89_RS01345 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS01355 PF02673 Bacitracin resistance protein BacA SD89_RS01360 PF05389 Negative regulator of genetic competence (MecA) SD89_RS01365 PF00953 Glycosyl transferase family 4 SD89_RS01370 PF00005 ABC transporter SD89_RS01375 PF01458 Uncharacterized protein family (UPF0051) SD89_RS01380 PF00266 Aminotransferase class-V SD89_RS01385 PF01592 NifU-like N terminal domain SD89_RS01390 PF01458 Uncharacterized protein family (UPF0051) SD89_RS01395 PF07943 Penicillin-binding protein 5, C-terminal domain SD89_RS01395 PF00768 D-alanyl-D-alanine carboxypeptidase SD89_RS01400 PF07943 Penicillin-binding protein 5, C-terminal domain SD89_RS01400 PF00768 D-alanyl-D-alanine carboxypeptidase SD89_RS01405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SD89_RS01410 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS01415 PF12911 N-terminal TM domain of oligopeptide transport permease C SD89_RS01415 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS01420 PF00005 ABC transporter SD89_RS01420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SD89_RS01425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SD89_RS01425 PF00005 ABC transporter SD89_RS01470 PF01416 tRNA pseudouridine synthase SD89_RS01475 PF08543 Phosphomethylpyrimidine kinase SD89_RS01480 PF07155 ECF-type riboflavin transporter, S component SD89_RS01485 PF04260 Protein of unknown function (DUF436) SD89_RS01490 PF00924 Mechanosensitive ion channel SD89_RS01495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SD89_RS01495 PF05698 Bacterial trigger factor protein (TF) C-terminus SD89_RS01495 PF05697 Bacterial trigger factor protein (TF) SD89_RS01500 PF05066 HB1, ASXL, restriction endonuclease HTH domain SD89_RS01505 PF00117 Glutamine amidotransferase class-I SD89_RS01505 PF06418 CTP synthase N-terminus SD89_RS01520 PF01116 Fructose-bisphosphate aldolase class-II SD89_RS01525 PF00830 Ribosomal L28 family SD89_RS01530 PF03780 Asp23 family, cell envelope-related function SD89_RS01535 PF02734 DAK2 domain SD89_RS01535 PF13684 Dihydroxyacetone kinase family SD89_RS01545 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SD89_RS01550 PF00162 Phosphoglycerate kinase SD89_RS01560 PF13411 MerR HTH family regulatory protein SD89_RS01565 PF00120 Glutamine synthetase, catalytic domain SD89_RS01565 PF03951 Glutamine synthetase, beta-Grasp domain SD89_RS01570 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SD89_RS01570 PF00753 Metallo-beta-lactamase superfamily SD89_RS01570 PF17770 Ribonuclease J C-terminal domain SD89_RS01575 PF07288 Protein of unknown function (DUF1447) SD89_RS01580 PF00814 Glycoprotease family SD89_RS01585 PF00583 Acetyltransferase (GNAT) family SD89_RS01590 PF00814 Glycoprotease family SD89_RS01595 PF00253 Ribosomal protein S14p/S29e SD89_RS01605 PF01048 Phosphorylase superfamily SD89_RS01610 PF01773 Na+ dependent nucleoside transporter N-terminus SD89_RS01610 PF07670 Nucleoside recognition SD89_RS01610 PF07662 Na+ dependent nucleoside transporter C-terminus SD89_RS01615 PF01791 DeoC/LacD family aldolase SD89_RS01635 PF00005 ABC transporter SD89_RS01635 PF02687 FtsX-like permease family SD89_RS01635 PF12704 MacB-like periplasmic core domain SD89_RS01645 PF08279 HTH domain SD89_RS01645 PF04394 Protein of unknown function, DUF536 SD89_RS01650 PF00929 Exonuclease SD89_RS01650 PF02811 PHP domain SD89_RS01650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SD89_RS01650 PF07733 Bacterial DNA polymerase III alpha NTPase domain SD89_RS01650 PF11490 DNA polymerase III polC-type N-terminus II SD89_RS01650 PF01336 OB-fold nucleic acid binding domain SD89_RS01650 PF14579 Helix-hairpin-helix motif SD89_RS01655 PF13411 MerR HTH family regulatory protein SD89_RS01655 PF07739 TipAS antibiotic-recognition domain SD89_RS01660 PF02575 YbaB/EbfC DNA-binding family SD89_RS01675 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SD89_RS01675 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SD89_RS01675 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SD89_RS01680 PF13545 Crp-like helix-turn-helix domain SD89_RS01685 PF07690 Major Facilitator Superfamily SD89_RS01690 PF00230 Major intrinsic protein SD89_RS01705 PF00144 Beta-lactamase SD89_RS01710 PF02901 Pyruvate formate lyase-like SD89_RS01710 PF01228 Glycine radical SD89_RS01715 PF11799 impB/mucB/samB family C-terminal domain SD89_RS01715 PF00817 impB/mucB/samB family SD89_RS01715 PF11798 IMS family HHH motif SD89_RS01725 PF14490 Helix-hairpin-helix containing domain SD89_RS01725 PF13538 UvrD-like helicase C-terminal domain SD89_RS01725 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SD89_RS01730 PF10502 Signal peptidase, peptidase S26 SD89_RS01735 PF11858 Domain of unknown function (DUF3378) SD89_RS01735 PF01351 Ribonuclease HII SD89_RS01750 PF01713 Smr domain SD89_RS01750 PF00488 MutS domain V SD89_RS01760 PF00085 Thioredoxin SD89_RS01765 PF01381 Helix-turn-helix SD89_RS01770 PF14815 NUDIX domain SD89_RS01770 PF00730 HhH-GPD superfamily base excision DNA repair protein SD89_RS01780 PF01250 Ribosomal protein S6 SD89_RS01785 PF00436 Single-strand binding protein family SD89_RS01790 PF01084 Ribosomal protein S18 SD89_RS01805 PF00005 ABC transporter SD89_RS01805 PF17755 UvrA DNA-binding domain SD89_RS01805 PF17760 UvrA interaction domain SD89_RS01810 PF00557 Metallopeptidase family M24 SD89_RS01810 PF01321 Creatinase/Prolidase N-terminal domain SD89_RS01815 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD89_RS01820 PF01132 Elongation factor P (EF-P) OB domain SD89_RS01820 PF08207 Elongation factor P (EF-P) KOW-like domain SD89_RS01820 PF09285 Elongation factor P, C-terminal SD89_RS01825 PF03780 Asp23 family, cell envelope-related function SD89_RS01830 PF01029 NusB family SD89_RS01835 PF00356 Bacterial regulatory proteins, lacI family SD89_RS01840 PF08244 Glycosyl hydrolases family 32 C terminal SD89_RS01840 PF00251 Glycosyl hydrolases family 32 N-terminal domain SD89_RS01845 PF02378 Phosphotransferase system, EIIC SD89_RS01845 PF00367 phosphotransferase system, EIIB SD89_RS01845 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SD89_RS01855 PF00480 ROK family SD89_RS01860 PF01238 Phosphomannose isomerase type I SD89_RS01865 PF01609 Transposase DDE domain SD89_RS01865 PF13808 DDE_Tnp_1-associated SD89_RS01875 PF07517 SecA DEAD-like domain SD89_RS01875 PF01043 SecA preprotein cross-linking domain SD89_RS01875 PF02810 SEC-C motif SD89_RS01875 PF07516 SecA Wing and Scaffold domain SD89_RS01880 PF01648 4'-phosphopantetheinyl transferase superfamily SD89_RS01885 PF00842 Alanine racemase, C-terminal domain SD89_RS01885 PF01168 Alanine racemase, N-terminal domain SD89_RS01890 PF01476 LysM domain SD89_RS01890 PF05257 CHAP domain SD89_RS01905 PF01497 Periplasmic binding protein SD89_RS01910 PF01032 FecCD transport family SD89_RS01915 PF00005 ABC transporter SD89_RS01920 PF00664 ABC transporter transmembrane region SD89_RS01920 PF00005 ABC transporter SD89_RS01925 PF00005 ABC transporter SD89_RS01925 PF00664 ABC transporter transmembrane region SD89_RS01940 PF00005 ABC transporter SD89_RS01945 PF17191 RecG wedge domain SD89_RS01945 PF00270 DEAD/DEAH box helicase SD89_RS01945 PF00271 Helicase conserved C-terminal domain SD89_RS01950 PF00005 ABC transporter SD89_RS01960 PF00710 Asparaginase, N-terminal SD89_RS01960 PF17763 Glutaminase/Asparaginase C-terminal domain SD89_RS01975 PF00155 Aminotransferase class I and II SD89_RS01980 PF08222 CodY helix-turn-helix domain SD89_RS01980 PF06018 CodY GAF-like domain SD89_RS01985 PF00857 Isochorismatase family SD89_RS01995 PF02686 Glu-tRNAGln amidotransferase C subunit SD89_RS02000 PF01425 Amidase SD89_RS02005 PF02637 GatB domain SD89_RS02005 PF02934 GatB/GatE catalytic domain SD89_RS02015 PF04226 Transglycosylase associated protein SD89_RS02020 PF00300 Histidine phosphatase superfamily (branch 1) SD89_RS02035 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SD89_RS02035 PF01628 HrcA protein C terminal domain SD89_RS02040 PF01025 GrpE SD89_RS02045 PF00012 Hsp70 protein SD89_RS02050 PF01556 DnaJ C terminal domain SD89_RS02050 PF00684 DnaJ central domain SD89_RS02050 PF00226 DnaJ domain SD89_RS02055 PF00378 Enoyl-CoA hydratase/isomerase SD89_RS02065 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SD89_RS02065 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SD89_RS02070 PF00550 Phosphopantetheine attachment site SD89_RS02075 PF03060 Nitronate monooxygenase SD89_RS02080 PF00698 Acyl transferase domain SD89_RS02090 PF02801 Beta-ketoacyl synthase, C-terminal domain SD89_RS02090 PF00109 Beta-ketoacyl synthase, N-terminal domain SD89_RS02095 PF00364 Biotin-requiring enzyme SD89_RS02100 PF07977 FabA-like domain SD89_RS02105 PF02785 Biotin carboxylase C-terminal domain SD89_RS02105 PF00289 Biotin carboxylase, N-terminal domain SD89_RS02105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD89_RS02110 PF17848 Acetyl-coA carboxylase zinc finger domain SD89_RS02110 PF01039 Carboxyl transferase domain SD89_RS02115 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SD89_RS02120 PF02403 Seryl-tRNA synthetase N-terminal domain SD89_RS02120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD89_RS02130 PF03613 PTS system mannose/fructose/sorbose family IID component SD89_RS02135 PF03609 PTS system sorbose-specific iic component SD89_RS02140 PF03830 PTS system sorbose subfamily IIB component SD89_RS02140 PF03610 PTS system fructose IIA component SD89_RS02150 PF00860 Permease family SD89_RS02155 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SD89_RS02165 PF03816 Cell envelope-related transcriptional attenuator domain SD89_RS02175 PF01230 HIT domain SD89_RS02180 PF00005 ABC transporter SD89_RS02185 PF05975 Bacterial ABC transporter protein EcsB SD89_RS02195 PF02390 Putative methyltransferase SD89_RS02205 PF02576 RimP N-terminal domain SD89_RS02205 PF17384 RimP C-terminal SH3 domain SD89_RS02210 PF13184 NusA-like KH domain SD89_RS02210 PF08529 NusA N-terminal domain SD89_RS02210 PF00575 S1 RNA binding domain SD89_RS02215 PF04296 Protein of unknown function (DUF448) SD89_RS02220 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SD89_RS02225 PF11987 Translation-initiation factor 2 SD89_RS02225 PF00009 Elongation factor Tu GTP binding domain SD89_RS02225 PF04760 Translation initiation factor IF-2, N-terminal region SD89_RS02235 PF02033 Ribosome-binding factor A SD89_RS02240 PF07859 alpha/beta hydrolase fold SD89_RS02245 PF03965 Penicillinase repressor SD89_RS02250 PF00403 Heavy-metal-associated domain SD89_RS02260 PF08220 DeoR-like helix-turn-helix domain SD89_RS02260 PF00455 DeoR C terminal sensor domain SD89_RS02280 PF02502 Ribose/Galactose Isomerase SD89_RS02285 PF02502 Ribose/Galactose Isomerase SD89_RS02290 PF00294 pfkB family carbohydrate kinase SD89_RS02295 PF01791 DeoC/LacD family aldolase SD89_RS02300 PF03458 UPF0126 domain SD89_RS02310 PF00440 Bacterial regulatory proteins, tetR family SD89_RS02315 PF02645 Uncharacterised protein, DegV family COG1307 SD89_RS02325 PF02690 Na+/Pi-cotransporter SD89_RS02330 PF01979 Amidohydrolase family SD89_RS02335 PF00248 Aldo/keto reductase family SD89_RS02340 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SD89_RS02345 PF02091 Glycyl-tRNA synthetase alpha subunit SD89_RS02350 PF02092 Glycyl-tRNA synthetase beta subunit SD89_RS02355 PF05979 Bacterial protein of unknown function (DUF896) SD89_RS02360 PF03413 Peptidase propeptide and YPEB domain SD89_RS02365 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SD89_RS02365 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SD89_RS02370 PF01266 FAD dependent oxidoreductase SD89_RS02370 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SD89_RS02375 PF00230 Major intrinsic protein SD89_RS02380 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD89_RS02380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD89_RS02390 PF00923 Transaldolase/Fructose-6-phosphate aldolase SD89_RS02395 PF02779 Transketolase, pyrimidine binding domain SD89_RS02395 PF02780 Transketolase, C-terminal domain SD89_RS02395 PF00456 Transketolase, thiamine diphosphate binding domain SD89_RS02405 PF00005 ABC transporter SD89_RS02415 PF00696 Amino acid kinase family SD89_RS02420 PF00171 Aldehyde dehydrogenase family SD89_RS02430 PF01795 MraW methylase family SD89_RS02440 PF00905 Penicillin binding protein transpeptidase domain SD89_RS02440 PF03717 Penicillin-binding Protein dimerisation domain SD89_RS02440 PF03793 PASTA domain SD89_RS02445 PF00953 Glycosyl transferase family 4 SD89_RS02445 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SD89_RS02450 PF00271 Helicase conserved C-terminal domain SD89_RS02450 PF00270 DEAD/DEAH box helicase SD89_RS02455 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS02460 PF00005 ABC transporter SD89_RS02470 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD89_RS02475 PF00324 Amino acid permease SD89_RS02480 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SD89_RS02480 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SD89_RS02480 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SD89_RS02485 PF02540 NAD synthase SD89_RS02490 PF03051 Peptidase C1-like family SD89_RS02495 PF00905 Penicillin binding protein transpeptidase domain SD89_RS02495 PF00912 Transglycosylase SD89_RS02500 PF03838 Recombination protein U SD89_RS02505 PF06908 YspA SLOG family SD89_RS02510 PF05103 DivIVA protein SD89_RS02520 PF02926 THUMP domain SD89_RS02520 PF01170 Putative RNA methylase family UPF0020 SD89_RS02525 PF18708 MapZ extracellular C-terminal domain 2 SD89_RS02525 PF18041 MapZ extracellular domain 1 SD89_RS02530 PF02664 S-Ribosylhomocysteinase (LuxS) SD89_RS02545 PF01144 Coenzyme A transferase SD89_RS02550 PF01144 Coenzyme A transferase SD89_RS02555 PF02803 Thiolase, C-terminal domain SD89_RS02555 PF00108 Thiolase, N-terminal domain SD89_RS02560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD89_RS02560 PF03466 LysR substrate binding domain SD89_RS02565 PF01966 HD domain SD89_RS02565 PF00013 KH domain SD89_RS02565 PF12072 Domain of unknown function (DUF3552) SD89_RS02570 PF00625 Guanylate kinase SD89_RS02575 PF01192 RNA polymerase Rpb6 SD89_RS02580 PF00271 Helicase conserved C-terminal domain SD89_RS02580 PF17764 3′ DNA-binding domain (3′BD) SD89_RS02580 PF18074 Primosomal protein N C-terminal domain SD89_RS02580 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SD89_RS02580 PF04851 Type III restriction enzyme, res subunit SD89_RS02585 PF00551 Formyl transferase SD89_RS02585 PF02911 Formyl transferase, C-terminal domain SD89_RS02590 PF01189 16S rRNA methyltransferase RsmB/F SD89_RS02590 PF01029 NusB family SD89_RS02600 PF03793 PASTA domain SD89_RS02600 PF00069 Protein kinase domain SD89_RS02610 PF00672 HAMP domain SD89_RS02610 PF07730 Histidine kinase SD89_RS02610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS02615 PF00196 Bacterial regulatory proteins, luxR family SD89_RS02615 PF00072 Response regulator receiver domain SD89_RS02620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SD89_RS02625 PF01138 3' exoribonuclease family, domain 1 SD89_RS02625 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SD89_RS02625 PF00575 S1 RNA binding domain SD89_RS02625 PF03725 3' exoribonuclease family, domain 2 SD89_RS02625 PF00013 KH domain SD89_RS02630 PF00291 Pyridoxal-phosphate dependent enzyme SD89_RS02635 PF01205 Uncharacterized protein family UPF0029 SD89_RS02635 PF09186 Domain of unknown function (DUF1949) SD89_RS02640 PF04851 Type III restriction enzyme, res subunit SD89_RS02640 PF00271 Helicase conserved C-terminal domain SD89_RS02650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SD89_RS02650 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SD89_RS02710 PF04167 Protein of unknown function (DUF402) SD89_RS02715 PF02631 RecX family SD89_RS02720 PF01938 TRAM domain SD89_RS02720 PF05958 tRNA (Uracil-5-)-methyltransferase SD89_RS02730 PF01074 Glycosyl hydrolases family 38 N-terminal domain SD89_RS02730 PF07748 Glycosyl hydrolases family 38 C-terminal domain SD89_RS02730 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SD89_RS02730 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SD89_RS02730 PF09261 Alpha mannosidase middle domain SD89_RS02740 PF00392 Bacterial regulatory proteins, gntR family SD89_RS02745 PF07555 beta-N-acetylglucosaminidase SD89_RS02745 PF02838 Glycosyl hydrolase family 20, domain 2 SD89_RS02750 PF00232 Glycosyl hydrolase family 1 SD89_RS02755 PF00480 ROK family SD89_RS02760 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS02765 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS02770 PF12010 Domain of unknown function (DUF3502) SD89_RS02780 PF00672 HAMP domain SD89_RS02780 PF06580 Histidine kinase SD89_RS02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS02780 PF02743 Cache domain SD89_RS02785 PF00072 Response regulator receiver domain SD89_RS02785 PF12833 Helix-turn-helix domain SD89_RS02790 PF16355 Domain of unknown function (DUF4982) SD89_RS02790 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SD89_RS02790 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SD89_RS02790 PF02837 Glycosyl hydrolases family 2, sugar binding domain SD89_RS02790 PF00703 Glycosyl hydrolases family 2 SD89_RS02795 PF08501 Shikimate dehydrogenase substrate binding domain SD89_RS02795 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SD89_RS02800 PF13649 Methyltransferase domain SD89_RS02815 PF01761 3-dehydroquinate synthase SD89_RS02820 PF01817 Chorismate mutase type II SD89_RS02820 PF00793 DAHP synthetase I family SD89_RS02830 PF01609 Transposase DDE domain SD89_RS02830 PF13808 DDE_Tnp_1-associated SD89_RS02845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS02845 PF01751 Toprim domain SD89_RS02845 PF00986 DNA gyrase B subunit, carboxyl terminus SD89_RS02845 PF00204 DNA gyrase B SD89_RS02850 PF06160 Septation ring formation regulator, EzrA SD89_RS02860 PF03952 Enolase, N-terminal domain SD89_RS02860 PF00113 Enolase, C-terminal TIM barrel domain SD89_RS02910 PF00005 ABC transporter SD89_RS02930 PF06177 QueT transporter SD89_RS02935 PF01653 NAD-dependent DNA ligase adenylation domain SD89_RS02935 PF12826 Helix-hairpin-helix motif SD89_RS02935 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SD89_RS02935 PF00533 BRCA1 C Terminus (BRCT) domain SD89_RS02935 PF03120 NAD-dependent DNA ligase OB-fold domain SD89_RS02940 PF00781 Diacylglycerol kinase catalytic domain SD89_RS02945 PF00137 ATP synthase subunit C SD89_RS02950 PF00119 ATP synthase A chain SD89_RS02955 PF00430 ATP synthase B/B' CF(0) SD89_RS02960 PF00213 ATP synthase delta (OSCP) subunit SD89_RS02965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD89_RS02965 PF00306 ATP synthase alpha/beta chain, C terminal domain SD89_RS02965 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD89_RS02970 PF00231 ATP synthase SD89_RS02975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD89_RS02975 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD89_RS02980 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SD89_RS02980 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SD89_RS02990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD89_RS03000 PF01223 DNA/RNA non-specific endonuclease SD89_RS03005 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SD89_RS03005 PF01409 tRNA synthetases class II core domain (F) SD89_RS03010 PF03147 Ferredoxin-fold anticodon binding domain SD89_RS03010 PF03484 tRNA synthetase B5 domain SD89_RS03010 PF03483 B3/4 domain SD89_RS03010 PF01588 Putative tRNA binding domain SD89_RS03010 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SD89_RS03025 PF02687 FtsX-like permease family SD89_RS03030 PF00005 ABC transporter SD89_RS03035 PF04228 Putative neutral zinc metallopeptidase SD89_RS03040 PF12705 PD-(D/E)XK nuclease superfamily SD89_RS03045 PF12705 PD-(D/E)XK nuclease superfamily SD89_RS03045 PF00580 UvrD/REP helicase N-terminal domain SD89_RS03045 PF13361 UvrD-like helicase C-terminal domain SD89_RS03050 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD89_RS03055 PF01165 Ribosomal protein S21 SD89_RS03060 PF01741 Large-conductance mechanosensitive channel, MscL SD89_RS03065 PF08275 DNA primase catalytic core, N-terminal domain SD89_RS03065 PF01807 CHC2 zinc finger SD89_RS03065 PF10410 DnaB-helicase binding domain of primase SD89_RS03070 PF04542 Sigma-70 region 2 SD89_RS03070 PF04539 Sigma-70 region 3 SD89_RS03070 PF00140 Sigma-70 factor, region 1.2 SD89_RS03070 PF04545 Sigma-70, region 4 SD89_RS03070 PF03979 Sigma-70 factor, region 1.1 SD89_RS03075 PF01883 Iron-sulfur cluster assembly protein SD89_RS03080 PF04321 RmlD substrate binding domain SD89_RS03090 PF00535 Glycosyl transferase family 2 SD89_RS03090 PF02709 N-terminal domain of galactosyltransferase SD89_RS03100 PF00005 ABC transporter SD89_RS03105 PF00535 Glycosyl transferase family 2 SD89_RS03120 PF00535 Glycosyl transferase family 2 SD89_RS03140 PF07687 Peptidase dimerisation domain SD89_RS03140 PF01546 Peptidase family M20/M25/M40 SD89_RS03155 PF02224 Cytidylate kinase SD89_RS03160 PF00707 Translation initiation factor IF-3, C-terminal domain SD89_RS03160 PF05198 Translation initiation factor IF-3, N-terminal domain SD89_RS03165 PF01632 Ribosomal protein L35 SD89_RS03170 PF00453 Ribosomal protein L20 SD89_RS03175 PF00884 Sulfatase SD89_RS03180 PF10672 S-adenosylmethionine-dependent methyltransferase SD89_RS03180 PF17785 PUA-like domain SD89_RS03185 PF01487 Type I 3-dehydroquinase SD89_RS03190 PF01264 Chorismate synthase SD89_RS03195 PF06133 Control of competence regulator ComK, YlbF/YmcA SD89_RS03200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD89_RS03200 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD89_RS03205 PF02875 Mur ligase family, glutamate ligase domain SD89_RS03205 PF08245 Mur ligase middle domain SD89_RS03215 PF00266 Aminotransferase class-V SD89_RS03220 PF02568 Thiamine biosynthesis protein (ThiI) SD89_RS03220 PF02926 THUMP domain SD89_RS03225 PF09587 Bacterial capsule synthesis protein PGA_cap SD89_RS03230 PF00829 Ribosomal prokaryotic L21 protein SD89_RS03240 PF01016 Ribosomal L27 protein SD89_RS03245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD89_RS03245 PF03466 LysR substrate binding domain SD89_RS03250 PF01252 Signal peptidase (SPase) II SD89_RS03255 PF00849 RNA pseudouridylate synthase SD89_RS03255 PF01479 S4 domain SD89_RS03260 PF00156 Phosphoribosyl transferase domain SD89_RS03265 PF00860 Permease family SD89_RS03270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SD89_RS03270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SD89_RS03275 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SD89_RS03275 PF00117 Glutamine amidotransferase class-I SD89_RS03280 PF02142 MGS-like domain SD89_RS03280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD89_RS03280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD89_RS03285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SD89_RS03290 PF00005 ABC transporter SD89_RS03295 PF12704 MacB-like periplasmic core domain SD89_RS03295 PF02687 FtsX-like permease family SD89_RS03300 PF03009 Glycerophosphoryl diester phosphodiesterase family SD89_RS03305 PF00886 Ribosomal protein S16 SD89_RS03335 PF05239 PRC-barrel domain SD89_RS03335 PF01782 RimM N-terminal domain SD89_RS03340 PF01746 tRNA (Guanine-1)-methyltransferase SD89_RS03345 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD89_RS03355 PF02558 Ketopantoate reductase PanE/ApbA SD89_RS03355 PF08546 Ketopantoate reductase PanE/ApbA C terminal SD89_RS03360 PF08220 DeoR-like helix-turn-helix domain SD89_RS03360 PF00455 DeoR C terminal sensor domain SD89_RS03365 PF00294 pfkB family carbohydrate kinase SD89_RS03370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD89_RS03370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD89_RS03375 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD89_RS03375 PF01476 LysM domain SD89_RS03380 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD89_RS03380 PF01476 LysM domain SD89_RS03385 PF13333 Integrase core domain SD89_RS03385 PF00665 Integrase core domain SD89_RS03390 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD89_RS03390 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD89_RS03395 PF09028 Mac 1 SD89_RS03400 PF00334 Nucleoside diphosphate kinase SD89_RS03410 PF02645 Uncharacterised protein, DegV family COG1307 SD89_RS03415 PF13735 tRNA nucleotidyltransferase domain 2 putative SD89_RS03415 PF12627 Probable RNA and SrmB- binding site of polymerase A SD89_RS03415 PF01743 Poly A polymerase head domain SD89_RS03420 PF00005 ABC transporter SD89_RS03420 PF12848 ABC transporter SD89_RS03420 PF16326 ABC transporter C-terminal domain SD89_RS03430 PF01327 Polypeptide deformylase SD89_RS03435 PF02872 5'-nucleotidase, C-terminal domain SD89_RS03435 PF17936 Bacterial Ig domain SD89_RS03435 PF00149 Calcineurin-like phosphoesterase SD89_RS03440 PF04607 Region found in RelA / SpoT proteins SD89_RS03445 PF00486 Transcriptional regulatory protein, C terminal SD89_RS03445 PF00072 Response regulator receiver domain SD89_RS03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS03450 PF00512 His Kinase A (phospho-acceptor) domain SD89_RS03455 PF00288 GHMP kinases N terminal domain SD89_RS03455 PF10509 Galactokinase galactose-binding signature SD89_RS03455 PF08544 GHMP kinases C terminal SD89_RS03465 PF00288 GHMP kinases N terminal domain SD89_RS03465 PF08544 GHMP kinases C terminal SD89_RS03470 PF01070 FMN-dependent dehydrogenase SD89_RS03475 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SD89_RS03480 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SD89_RS03480 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SD89_RS03485 PF00303 Thymidylate synthase SD89_RS03490 PF00186 Dihydrofolate reductase SD89_RS03495 PF10431 C-terminal, D2-small domain, of ClpB protein SD89_RS03495 PF07724 AAA domain (Cdc48 subfamily) SD89_RS03495 PF06689 ClpX C4-type zinc finger SD89_RS03500 PF01926 50S ribosome-binding GTPase SD89_RS03510 PF10431 C-terminal, D2-small domain, of ClpB protein SD89_RS03510 PF17871 AAA lid domain SD89_RS03510 PF07724 AAA domain (Cdc48 subfamily) SD89_RS03510 PF00004 ATPase family associated with various cellular activities (AAA) SD89_RS03515 PF13808 DDE_Tnp_1-associated SD89_RS03515 PF01609 Transposase DDE domain SD89_RS03525 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SD89_RS03530 PF01676 Metalloenzyme superfamily SD89_RS03535 PF03960 ArsC family SD89_RS03540 PF01048 Phosphorylase superfamily SD89_RS03545 PF01048 Phosphorylase superfamily SD89_RS03555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD89_RS03555 PF03466 LysR substrate binding domain SD89_RS03565 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SD89_RS03570 PF00156 Phosphoribosyl transferase domain SD89_RS03575 PF01425 Amidase SD89_RS03580 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD89_RS03585 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS03590 PF03167 Uracil DNA glycosylase superfamily SD89_RS03595 PF01979 Amidohydrolase family SD89_RS03600 PF02660 Glycerol-3-phosphate acyltransferase SD89_RS03605 PF00204 DNA gyrase B SD89_RS03605 PF01751 Toprim domain SD89_RS03605 PF00986 DNA gyrase B subunit, carboxyl terminus SD89_RS03605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS03610 PF00521 DNA gyrase/topoisomerase IV, subunit A SD89_RS03610 PF03989 DNA gyrase C-terminal domain, beta-propeller SD89_RS03615 PF01063 Amino-transferase class IV SD89_RS03635 PF00575 S1 RNA binding domain SD89_RS03650 PF00581 Rhodanese-like domain SD89_RS03650 PF17773 UPF0176 acylphosphatase like domain SD89_RS03650 PF12368 Rhodanase C-terminal SD89_RS03670 PF16360 GTP-binding GTPase Middle Region SD89_RS03670 PF13167 GTP-binding GTPase N-terminal SD89_RS03670 PF01926 50S ribosome-binding GTPase SD89_RS03675 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SD89_RS03675 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SD89_RS03680 PF00753 Metallo-beta-lactamase superfamily SD89_RS03680 PF12706 Beta-lactamase superfamily domain SD89_RS03685 PF00106 short chain dehydrogenase SD89_RS03690 PF01368 DHH family SD89_RS03690 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SD89_RS03690 PF17768 RecJ OB domain SD89_RS03690 PF02272 DHHA1 domain SD89_RS03695 PF00156 Phosphoribosyl transferase domain SD89_RS03705 PF00633 Helix-hairpin-helix motif SD89_RS03705 PF10576 Iron-sulfur binding domain of endonuclease III SD89_RS03705 PF00730 HhH-GPD superfamily base excision DNA repair protein SD89_RS03710 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SD89_RS03715 PF01784 NIF3 (NGG1p interacting factor 3) SD89_RS03720 PF01266 FAD dependent oxidoreductase SD89_RS03725 PF00483 Nucleotidyl transferase SD89_RS03730 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SD89_RS03735 PF16363 GDP-mannose 4,6 dehydratase SD89_RS03740 PF00293 NUDIX domain SD89_RS03745 PF01594 AI-2E family transporter SD89_RS03755 PF05670 NFACT protein RNA binding domain SD89_RS03770 PF00005 ABC transporter SD89_RS03775 PF17770 Ribonuclease J C-terminal domain SD89_RS03775 PF00753 Metallo-beta-lactamase superfamily SD89_RS03775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SD89_RS03780 PF00756 Putative esterase SD89_RS03790 PF12848 ABC transporter SD89_RS03790 PF00005 ABC transporter SD89_RS03790 PF16326 ABC transporter C-terminal domain SD89_RS03795 PF00676 Dehydrogenase E1 component SD89_RS03800 PF02779 Transketolase, pyrimidine binding domain SD89_RS03800 PF00364 Biotin-requiring enzyme SD89_RS03800 PF02780 Transketolase, C-terminal domain SD89_RS03805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SD89_RS03805 PF00364 Biotin-requiring enzyme SD89_RS03805 PF02817 e3 binding domain SD89_RS03815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD89_RS03815 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD89_RS03820 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SD89_RS03820 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SD89_RS03820 PF02278 Polysaccharide lyase family 8, super-sandwich domain SD89_RS03825 PF10437 Bacterial lipoate protein ligase C-terminus SD89_RS03825 PF03099 Biotin/lipoate A/B protein ligase family SD89_RS03830 PF07685 CobB/CobQ-like glutamine amidotransferase domain SD89_RS03835 PF08353 Domain of unknown function (DUF1727) SD89_RS03835 PF08245 Mur ligase middle domain SD89_RS03840 PF02457 DisA bacterial checkpoint controller nucleotide-binding SD89_RS03850 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD89_RS03850 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD89_RS03850 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD89_RS03850 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD89_RS03860 PF04055 Radical SAM superfamily SD89_RS03860 PF06969 HemN C-terminal domain SD89_RS03870 PF13344 Haloacid dehalogenase-like hydrolase SD89_RS03885 PF01867 CRISPR associated protein Cas1 SD89_RS03890 PF09827 CRISPR associated protein Cas2 SD89_RS03895 PF09711 CRISPR-associated protein (Cas_Csn2) SD89_RS03900 PF00334 Nucleoside diphosphate kinase SD89_RS03905 PF14492 Elongation Factor G, domain II SD89_RS03905 PF00009 Elongation factor Tu GTP binding domain SD89_RS03905 PF00679 Elongation factor G C-terminus SD89_RS03905 PF03144 Elongation factor Tu domain 2 SD89_RS03905 PF06421 GTP-binding protein LepA C-terminus SD89_RS03910 PF00746 LPXTG cell wall anchor motif SD89_RS03910 PF02370 M protein repeat SD89_RS03915 PF01641 SelR domain SD89_RS03920 PF03601 Conserved hypothetical protein 698 SD89_RS03930 PF03830 PTS system sorbose subfamily IIB component SD89_RS03935 PF03609 PTS system sorbose-specific iic component SD89_RS03940 PF03613 PTS system mannose/fructose/sorbose family IID component SD89_RS03945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS03945 PF06580 Histidine kinase SD89_RS03950 PF00072 Response regulator receiver domain SD89_RS03950 PF12833 Helix-turn-helix domain SD89_RS03960 PF00171 Aldehyde dehydrogenase family SD89_RS03965 PF01541 GIY-YIG catalytic domain SD89_RS03965 PF02151 UvrB/uvrC motif SD89_RS03965 PF08459 UvrC Helix-hairpin-helix N-terminal SD89_RS03970 PF00881 Nitroreductase family SD89_RS03975 PF01546 Peptidase family M20/M25/M40 SD89_RS03980 PF01926 50S ribosome-binding GTPase SD89_RS03980 PF12631 MnmE helical domain SD89_RS03980 PF10396 GTP-binding protein TrmE N-terminus SD89_RS03990 PF00466 Ribosomal protein L10 SD89_RS03995 PF16320 Ribosomal protein L7/L12 dimerisation domain SD89_RS03995 PF00542 Ribosomal protein L7/L12 C-terminal domain SD89_RS04005 PF00145 C-5 cytosine-specific DNA methylase SD89_RS04030 PF00072 Response regulator receiver domain SD89_RS04030 PF00486 Transcriptional regulatory protein, C terminal SD89_RS04035 PF00512 His Kinase A (phospho-acceptor) domain SD89_RS04035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS04045 PF00005 ABC transporter SD89_RS04050 PF05147 Lanthionine synthetase C-like protein SD89_RS04055 PF14028 Lantibiotic biosynthesis dehydratase C-term SD89_RS04055 PF04738 Lantibiotic dehydratase, N terminus SD89_RS04060 PF00005 ABC transporter SD89_RS04075 PF01381 Helix-turn-helix SD89_RS04105 PF00768 D-alanyl-D-alanine carboxypeptidase SD89_RS04105 PF07943 Penicillin-binding protein 5, C-terminal domain SD89_RS04115 PF08245 Mur ligase middle domain SD89_RS04115 PF02875 Mur ligase family, glutamate ligase domain SD89_RS04120 PF01227 GTP cyclohydrolase I SD89_RS04125 PF00809 Pterin binding enzyme SD89_RS04130 PF02152 Dihydroneopterin aldolase SD89_RS04135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SD89_RS04140 PF01565 FAD binding domain SD89_RS04140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SD89_RS04145 PF00005 ABC transporter SD89_RS04145 PF08402 TOBE domain SD89_RS04150 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS04155 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS04160 PF13416 Bacterial extracellular solute-binding protein SD89_RS04165 PF00072 Response regulator receiver domain SD89_RS04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS04170 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SD89_RS04170 PF17203 Single cache domain 3 SD89_RS04170 PF00989 PAS fold SD89_RS04175 PF03390 2-hydroxycarboxylate transporter family SD89_RS04180 PF03949 Malic enzyme, NAD binding domain SD89_RS04180 PF00390 Malic enzyme, N-terminal domain SD89_RS04185 PF00107 Zinc-binding dehydrogenase SD89_RS04185 PF13823 Alcohol dehydrogenase GroES-associated SD89_RS04185 PF08240 Alcohol dehydrogenase GroES-like domain SD89_RS04190 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SD89_RS04195 PF00654 Voltage gated chloride channel SD89_RS04205 PF01594 AI-2E family transporter SD89_RS04210 PF04002 RadC-like JAB domain SD89_RS04215 PF07722 Peptidase C26 SD89_RS04220 PF02629 CoA binding domain SD89_RS04220 PF06971 Putative DNA-binding protein N-terminus SD89_RS04230 PF00266 Aminotransferase class-V SD89_RS04235 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SD89_RS04235 PF14572 Phosphoribosyl synthetase-associated domain SD89_RS04245 PF04607 Region found in RelA / SpoT proteins SD89_RS04250 PF01513 ATP-NAD kinase SD89_RS04255 PF01479 S4 domain SD89_RS04255 PF00849 RNA pseudouridylate synthase SD89_RS04260 PF01515 Phosphate acetyl/butaryl transferase SD89_RS04265 PF00106 short chain dehydrogenase SD89_RS04275 PF00571 CBS domain SD89_RS04275 PF00005 ABC transporter SD89_RS04280 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS04285 PF00478 IMP dehydrogenase / GMP reductase domain SD89_RS04290 PF00156 Phosphoribosyl transferase domain SD89_RS04295 PF00860 Permease family SD89_RS04300 PF02424 ApbE family SD89_RS04305 PF01361 Tautomerase enzyme SD89_RS04310 PF00265 Thymidine kinase SD89_RS04315 PF03462 PCRF domain SD89_RS04315 PF00472 RF-1 domain SD89_RS04320 PF05175 Methyltransferase small domain SD89_RS04335 PF00464 Serine hydroxymethyltransferase SD89_RS04350 PF00664 ABC transporter transmembrane region SD89_RS04350 PF00005 ABC transporter SD89_RS04355 PF00664 ABC transporter transmembrane region SD89_RS04355 PF00005 ABC transporter SD89_RS04360 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD89_RS04360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD89_RS04365 PF00056 lactate/malate dehydrogenase, NAD binding domain SD89_RS04365 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SD89_RS04370 PF00521 DNA gyrase/topoisomerase IV, subunit A SD89_RS04370 PF03989 DNA gyrase C-terminal domain, beta-propeller SD89_RS04375 PF04203 Sortase domain SD89_RS04380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD89_RS04395 PF03006 Haemolysin-III related SD89_RS04405 PF01926 50S ribosome-binding GTPase SD89_RS04410 PF01351 Ribonuclease HII SD89_RS04415 PF02481 DNA recombination-mediator protein A SD89_RS04415 PF18255 DNA processing protein A sterile alpha motif domain SD89_RS04420 PF01396 Topoisomerase DNA binding C4 zinc finger SD89_RS04420 PF01131 DNA topoisomerase SD89_RS04420 PF01751 Toprim domain SD89_RS04435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SD89_RS04435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SD89_RS04450 PF01134 Glucose inhibited division protein A SD89_RS04455 PF00364 Biotin-requiring enzyme SD89_RS04455 PF02436 Conserved carboxylase domain SD89_RS04455 PF00682 HMGL-like SD89_RS04465 PF00364 Biotin-requiring enzyme SD89_RS04470 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SD89_RS04475 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SD89_RS04485 PF03600 Citrate transporter SD89_RS04495 PF00364 Biotin-requiring enzyme SD89_RS04500 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SD89_RS04505 PF06857 Malonate decarboxylase delta subunit (MdcD) SD89_RS04510 PF03328 HpcH/HpaI aldolase/citrate lyase family SD89_RS04515 PF04223 Citrate lyase, alpha subunit (CitF) SD89_RS04520 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SD89_RS04525 PF02436 Conserved carboxylase domain SD89_RS04525 PF00364 Biotin-requiring enzyme SD89_RS04525 PF00682 HMGL-like SD89_RS04530 PF08218 Citrate lyase ligase C-terminal domain SD89_RS04540 PF13495 Phage integrase, N-terminal SAM-like domain SD89_RS04540 PF00589 Phage integrase family SD89_RS04550 PF02978 Signal peptide binding domain SD89_RS04550 PF00448 SRP54-type protein, GTPase domain SD89_RS04550 PF02881 SRP54-type protein, helical bundle domain SD89_RS04555 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SD89_RS04560 PF00392 Bacterial regulatory proteins, gntR family SD89_RS04560 PF07702 UTRA domain SD89_RS04570 PF02540 NAD synthase SD89_RS04570 PF00117 Glutamine amidotransferase class-I SD89_RS04570 PF00958 GMP synthase C terminal domain SD89_RS04580 PF12848 ABC transporter SD89_RS04580 PF00005 ABC transporter SD89_RS04590 PF02581 Thiamine monophosphate synthase SD89_RS04590 PF08543 Phosphomethylpyrimidine kinase SD89_RS04595 PF00392 Bacterial regulatory proteins, gntR family SD89_RS04595 PF00155 Aminotransferase class I and II SD89_RS04600 PF03477 ATP cone domain SD89_RS04600 PF13597 Anaerobic ribonucleoside-triphosphate reductase SD89_RS04605 PF13091 PLD-like domain SD89_RS04610 PF01268 Formate--tetrahydrofolate ligase SD89_RS04615 PF10437 Bacterial lipoate protein ligase C-terminus SD89_RS04615 PF03099 Biotin/lipoate A/B protein ligase family SD89_RS04625 PF01661 Macro domain SD89_RS04630 PF01597 Glycine cleavage H-protein SD89_RS04635 PF00296 Luciferase-like monooxygenase SD89_RS04640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SD89_RS04645 PF03099 Biotin/lipoate A/B protein ligase family SD89_RS04650 PF02441 Flavoprotein SD89_RS04650 PF04127 DNA / pantothenate metabolism flavoprotein SD89_RS04655 PF02441 Flavoprotein SD89_RS04660 PF12822 ECF transporter, substrate-specific component SD89_RS04665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD89_RS04665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD89_RS04665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD89_RS04665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD89_RS04670 PF02653 Branched-chain amino acid transport system / permease component SD89_RS04675 PF02653 Branched-chain amino acid transport system / permease component SD89_RS04680 PF00005 ABC transporter SD89_RS04685 PF02608 ABC transporter substrate-binding protein PnrA-like SD89_RS04690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD89_RS04695 PF05175 Methyltransferase small domain SD89_RS04700 PF00485 Phosphoribulokinase / Uridine kinase family SD89_RS04705 PF01649 Ribosomal protein S20 SD89_RS04710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS04710 PF00512 His Kinase A (phospho-acceptor) domain SD89_RS04715 PF00486 Transcriptional regulatory protein, C terminal SD89_RS04715 PF00072 Response regulator receiver domain SD89_RS04720 PF01433 Peptidase family M1 domain SD89_RS04720 PF11838 ERAP1-like C-terminal domain SD89_RS04725 PF01895 PhoU domain SD89_RS04730 PF00005 ABC transporter SD89_RS04735 PF00005 ABC transporter SD89_RS04740 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS04745 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS04750 PF12849 PBP superfamily domain SD89_RS04755 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SD89_RS04755 PF17126 RsmF rRNA methyltransferase first C-terminal domain SD89_RS04755 PF01189 16S rRNA methyltransferase RsmB/F SD89_RS04760 PF00459 Inositol monophosphatase family SD89_RS04765 PF05256 Uncharacterised protein family (UPF0223) SD89_RS04770 PF03960 ArsC family SD89_RS04775 PF06574 FAD synthetase SD89_RS04775 PF01687 Riboflavin kinase SD89_RS04780 PF01509 TruB family pseudouridylate synthase (N terminal domain) SD89_RS04780 PF16198 tRNA pseudouridylate synthase B C-terminal domain SD89_RS04805 PF02687 FtsX-like permease family SD89_RS04805 PF12704 MacB-like periplasmic core domain SD89_RS04805 PF00005 ABC transporter SD89_RS04820 PF03780 Asp23 family, cell envelope-related function SD89_RS04825 PF05532 CsbD-like SD89_RS04830 PF03780 Asp23 family, cell envelope-related function SD89_RS04850 PF13361 UvrD-like helicase C-terminal domain SD89_RS04850 PF00580 UvrD/REP helicase N-terminal domain SD89_RS04855 PF01235 Sodium:alanine symporter family SD89_RS04860 PF16916 Dimerisation domain of Zinc Transporter SD89_RS04860 PF01545 Cation efflux family SD89_RS04865 PF07373 CAMP factor (Cfa) SD89_RS04870 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD89_RS04875 PF00005 ABC transporter SD89_RS04880 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS04885 PF08274 PhnA Zinc-Ribbon SD89_RS04885 PF03831 PhnA domain SD89_RS04890 PF01380 SIS domain SD89_RS04895 PF10502 Signal peptidase, peptidase S26 SD89_RS04900 PF02887 Pyruvate kinase, alpha/beta domain SD89_RS04900 PF00224 Pyruvate kinase, barrel domain SD89_RS04905 PF00365 Phosphofructokinase SD89_RS04910 PF07733 Bacterial DNA polymerase III alpha NTPase domain SD89_RS04910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SD89_RS04910 PF14579 Helix-hairpin-helix motif SD89_RS04910 PF02811 PHP domain SD89_RS04910 PF01336 OB-fold nucleic acid binding domain SD89_RS04915 PF00392 Bacterial regulatory proteins, gntR family SD89_RS04920 PF00005 ABC transporter SD89_RS04960 PF08460 Bacterial SH3 domain SD89_RS04960 PF05257 CHAP domain SD89_RS04960 PF01520 N-acetylmuramoyl-L-alanine amidase SD89_RS04970 PF13457 GW (Gly-Tryp) dipeptide domain SD89_RS04970 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD89_RS04975 PF05105 Bacteriophage holin family SD89_RS05050 PF00574 Clp protease SD89_RS05140 PF00270 DEAD/DEAH box helicase SD89_RS05140 PF00271 Helicase conserved C-terminal domain SD89_RS05235 PF00343 Carbohydrate phosphorylase SD89_RS05240 PF02446 4-alpha-glucanotransferase SD89_RS05245 PF00356 Bacterial regulatory proteins, lacI family SD89_RS05245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SD89_RS05250 PF13416 Bacterial extracellular solute-binding protein SD89_RS05255 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS05260 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS05265 PF00356 Bacterial regulatory proteins, lacI family SD89_RS05275 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS05280 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS05285 PF00128 Alpha amylase, catalytic domain SD89_RS05285 PF00686 Starch binding domain SD89_RS05285 PF01833 IPT/TIG domain SD89_RS05290 PF00128 Alpha amylase, catalytic domain SD89_RS05290 PF02903 Alpha amylase, N-terminal ig-like domain SD89_RS05295 PF13416 Bacterial extracellular solute-binding protein SD89_RS05305 PF00934 PE family SD89_RS05305 PF07859 alpha/beta hydrolase fold SD89_RS05310 PF04914 DltD protein SD89_RS05315 PF00550 Phosphopantetheine attachment site SD89_RS05320 PF03062 MBOAT, membrane-bound O-acyltransferase family SD89_RS05325 PF00501 AMP-binding enzyme SD89_RS05325 PF13193 AMP-binding enzyme C-terminal domain SD89_RS05335 PF00271 Helicase conserved C-terminal domain SD89_RS05335 PF04851 Type III restriction enzyme, res subunit SD89_RS05335 PF17757 UvrB interaction domain SD89_RS05335 PF02151 UvrB/uvrC motif SD89_RS05335 PF12344 Ultra-violet resistance protein B SD89_RS05340 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD89_RS05345 PF00005 ABC transporter SD89_RS05350 PF02378 Phosphotransferase system, EIIC SD89_RS05360 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SD89_RS05365 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD89_RS05370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD89_RS05370 PF00874 PRD domain SD89_RS05370 PF05043 Mga helix-turn-helix domain SD89_RS05370 PF08279 HTH domain SD89_RS05380 PF00232 Glycosyl hydrolase family 1 SD89_RS05385 PF01609 Transposase DDE domain SD89_RS05385 PF13808 DDE_Tnp_1-associated SD89_RS05400 PF09269 Domain of unknown function (DUF1967) SD89_RS05400 PF01018 GTP1/OBG SD89_RS05400 PF01926 50S ribosome-binding GTPase SD89_RS05410 PF13276 HTH-like domain SD89_RS05410 PF00665 Integrase core domain SD89_RS05410 PF13333 Integrase core domain SD89_RS05415 PF00849 RNA pseudouridylate synthase SD89_RS05415 PF01479 S4 domain SD89_RS05425 PF07690 Major Facilitator Superfamily SD89_RS05430 PF08903 Domain of unknown function (DUF1846) SD89_RS05445 PF00239 Resolvase, N terminal domain SD89_RS05445 PF02796 Helix-turn-helix domain of resolvase SD89_RS05485 PF03432 Relaxase/Mobilisation nuclease domain SD89_RS05505 PF02486 Replication initiation factor SD89_RS05505 PF18106 Rolling Circle replication initiation protein N-terminal domain SD89_RS05530 PF13610 DDE domain SD89_RS05535 PF02673 Bacitracin resistance protein BacA SD89_RS05545 PF00005 ABC transporter SD89_RS05550 PF01381 Helix-turn-helix SD89_RS05560 PF13610 DDE domain SD89_RS05575 PF00877 NlpC/P60 family SD89_RS05585 PF14492 Elongation Factor G, domain II SD89_RS05585 PF00679 Elongation factor G C-terminus SD89_RS05585 PF00009 Elongation factor Tu GTP binding domain SD89_RS05585 PF03764 Elongation factor G, domain IV SD89_RS05605 PF09035 Excisionase from transposon Tn916 SD89_RS05610 PF02920 DNA binding domain of tn916 integrase SD89_RS05610 PF00589 Phage integrase family SD89_RS05620 PF00398 Ribosomal RNA adenine dimethylase SD89_RS05630 PF13732 Domain of unknown function (DUF4162) SD89_RS05630 PF00005 ABC transporter SD89_RS05635 PF00440 Bacterial regulatory proteins, tetR family SD89_RS05650 PF00145 C-5 cytosine-specific DNA methylase SD89_RS05655 PF01751 Toprim domain SD89_RS05655 PF01131 DNA topoisomerase SD89_RS05730 PF01470 Pyroglutamyl peptidase SD89_RS05745 PF01636 Phosphotransferase enzyme family SD89_RS05750 PF00583 Acetyltransferase (GNAT) family SD89_RS05755 PF04439 Streptomycin adenylyltransferase SD89_RS05780 PF01695 IstB-like ATP binding protein SD89_RS05785 PF06970 Replication initiator protein A (RepA) N-terminus SD89_RS05785 PF18008 Replication initiator protein A C-terminal domain SD89_RS05790 PF01938 TRAM domain SD89_RS05790 PF05958 tRNA (Uracil-5-)-methyltransferase SD89_RS05795 PF03816 Cell envelope-related transcriptional attenuator domain SD89_RS05800 PF01202 Shikimate kinase SD89_RS05805 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD89_RS05815 PF00557 Metallopeptidase family M24 SD89_RS05820 PF07085 DRTGG domain SD89_RS05820 PF00571 CBS domain SD89_RS05820 PF03061 Thioesterase superfamily SD89_RS05820 PF00392 Bacterial regulatory proteins, gntR family SD89_RS05855 PF00933 Glycosyl hydrolase family 3 N terminal domain SD89_RS05865 PF00106 short chain dehydrogenase SD89_RS05870 PF03786 D-mannonate dehydratase (UxuA) SD89_RS05875 PF02614 Glucuronate isomerase SD89_RS05880 PF01081 KDPG and KHG aldolase SD89_RS05885 PF07729 FCD domain SD89_RS05885 PF00392 Bacterial regulatory proteins, gntR family SD89_RS05890 PF00703 Glycosyl hydrolases family 2 SD89_RS05890 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SD89_RS05890 PF02837 Glycosyl hydrolases family 2, sugar binding domain SD89_RS05905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD89_RS05910 PF02773 S-adenosylmethionine synthetase, C-terminal domain SD89_RS05910 PF02772 S-adenosylmethionine synthetase, central domain SD89_RS05910 PF00438 S-adenosylmethionine synthetase, N-terminal domain SD89_RS05920 PF02237 Biotin protein ligase C terminal domain SD89_RS05920 PF03099 Biotin/lipoate A/B protein ligase family SD89_RS05920 PF08279 HTH domain SD89_RS05925 PF12169 DNA polymerase III subunits gamma and tau domain III SD89_RS05930 PF13185 GAF domain SD89_RS05945 PF00485 Phosphoribulokinase / Uridine kinase family SD89_RS05950 PF00270 DEAD/DEAH box helicase SD89_RS05950 PF00271 Helicase conserved C-terminal domain SD89_RS05955 PF01522 Polysaccharide deacetylase SD89_RS05955 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SD89_RS05960 PF00171 Aldehyde dehydrogenase family SD89_RS05965 PF05524 PEP-utilising enzyme, N-terminal SD89_RS05965 PF00391 PEP-utilising enzyme, mobile domain SD89_RS05965 PF02896 PEP-utilising enzyme, TIM barrel domain SD89_RS05970 PF00381 PTS HPr component phosphorylation site SD89_RS05975 PF00462 Glutaredoxin SD89_RS05980 PF02867 Ribonucleotide reductase, barrel domain SD89_RS05980 PF08343 Ribonucleotide reductase N-terminal SD89_RS05980 PF00317 Ribonucleotide reductase, all-alpha domain SD89_RS05985 PF00268 Ribonucleotide reductase, small chain SD89_RS06000 PF13333 Integrase core domain SD89_RS06000 PF13276 HTH-like domain SD89_RS06000 PF00665 Integrase core domain SD89_RS06005 PF00665 Integrase core domain SD89_RS06005 PF13333 Integrase core domain SD89_RS06005 PF13276 HTH-like domain SD89_RS06020 PF01381 Helix-turn-helix SD89_RS06025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD89_RS06025 PF02272 DHHA1 domain SD89_RS06025 PF01411 tRNA synthetases class II (A) SD89_RS06030 PF13145 PPIC-type PPIASE domain SD89_RS06035 PF01596 O-methyltransferase SD89_RS06040 PF07690 Major Facilitator Superfamily SD89_RS06045 PF01432 Peptidase family M3 SD89_RS06045 PF08439 Oligopeptidase F SD89_RS06055 PF00849 RNA pseudouridylate synthase SD89_RS06055 PF01479 S4 domain SD89_RS06060 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SD89_RS06065 PF02547 Queuosine biosynthesis protein SD89_RS06090 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SD89_RS06090 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SD89_RS06100 PF00753 Metallo-beta-lactamase superfamily SD89_RS06100 PF03772 Competence protein SD89_RS06100 PF13567 Domain of unknown function (DUF4131) SD89_RS06105 PF10531 SLBB domain SD89_RS06110 PF01553 Acyltransferase SD89_RS06115 PF05175 Methyltransferase small domain SD89_RS06120 PF01541 GIY-YIG catalytic domain SD89_RS06125 PF02705 K+ potassium transporter SD89_RS06130 PF00270 DEAD/DEAH box helicase SD89_RS06130 PF00271 Helicase conserved C-terminal domain SD89_RS06135 PF16658 Class II release factor RF3, C-terminal domain SD89_RS06135 PF03144 Elongation factor Tu domain 2 SD89_RS06135 PF00009 Elongation factor Tu GTP binding domain SD89_RS06145 PF02875 Mur ligase family, glutamate ligase domain SD89_RS06145 PF01225 Mur ligase family, catalytic domain SD89_RS06145 PF08245 Mur ligase middle domain SD89_RS06150 PF07478 D-ala D-ala ligase C-terminus SD89_RS06150 PF01820 D-ala D-ala ligase N-terminus SD89_RS06155 PF13662 Toprim domain SD89_RS06155 PF02132 RecR protein SD89_RS06160 PF00905 Penicillin binding protein transpeptidase domain SD89_RS06160 PF03717 Penicillin-binding Protein dimerisation domain SD89_RS06165 PF01226 Formate/nitrite transporter SD89_RS06175 PF02829 3H domain SD89_RS06175 PF08279 HTH domain SD89_RS06180 PF00300 Histidine phosphatase superfamily (branch 1) SD89_RS06185 PF01180 Dihydroorotate dehydrogenase SD89_RS06210 PF05257 CHAP domain SD89_RS06210 PF08460 Bacterial SH3 domain SD89_RS06210 PF01520 N-acetylmuramoyl-L-alanine amidase SD89_RS06220 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD89_RS06220 PF13457 GW (Gly-Tryp) dipeptide domain SD89_RS06395 PF03837 RecT family SD89_RS06440 PF01381 Helix-turn-helix SD89_RS06450 PF00589 Phage integrase family SD89_RS06450 PF14659 Phage integrase, N-terminal SAM-like domain SD89_RS06455 PF00216 Bacterial DNA-binding protein SD89_RS06465 PF13472 GDSL-like Lipase/Acylhydrolase family SD89_RS06470 PF02645 Uncharacterised protein, DegV family COG1307 SD89_RS06480 PF13476 AAA domain SD89_RS06485 PF01316 Arginine repressor, DNA binding domain SD89_RS06485 PF02863 Arginine repressor, C-terminal domain SD89_RS06490 PF01479 S4 domain SD89_RS06490 PF01728 FtsJ-like methyltransferase SD89_RS06495 PF00348 Polyprenyl synthetase SD89_RS06500 PF02609 Exonuclease VII small subunit SD89_RS06505 PF02601 Exonuclease VII, large subunit SD89_RS06505 PF13742 OB-fold nucleic acid binding domain SD89_RS06510 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SD89_RS06510 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SD89_RS06515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD89_RS06515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD89_RS06515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD89_RS06515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD89_RS06520 PF00875 DNA photolyase SD89_RS06520 PF03441 FAD binding domain of DNA photolyase SD89_RS06525 PF00005 ABC transporter SD89_RS06530 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS06535 PF08796 Protein of unknown function (DUF1797) SD89_RS06540 PF07724 AAA domain (Cdc48 subfamily) SD89_RS06540 PF10431 C-terminal, D2-small domain, of ClpB protein SD89_RS06540 PF00004 ATPase family associated with various cellular activities (AAA) SD89_RS06540 PF17871 AAA lid domain SD89_RS06545 PF00293 NUDIX domain SD89_RS06555 PF00133 tRNA synthetases class I (I, L, M and V) SD89_RS06555 PF08264 Anticodon-binding domain of tRNA SD89_RS06560 PF05103 DivIVA protein SD89_RS06565 PF17774 Putative RNA-binding domain in YlmH SD89_RS06565 PF01479 S4 domain SD89_RS06575 PF04472 Cell division protein SepF SD89_RS06580 PF01168 Alanine racemase, N-terminal domain SD89_RS06585 PF00091 Tubulin/FtsZ family, GTPase domain SD89_RS06585 PF12327 FtsZ family, C-terminal domain SD89_RS06590 PF11983 Membrane-attachment and polymerisation-promoting switch SD89_RS06590 PF02491 SHS2 domain inserted in FTSA SD89_RS06595 PF08478 POTRA domain, FtsQ-type SD89_RS06600 PF04101 Glycosyltransferase family 28 C-terminal domain SD89_RS06600 PF03033 Glycosyltransferase family 28 N-terminal domain SD89_RS06605 PF08245 Mur ligase middle domain SD89_RS06605 PF02875 Mur ligase family, glutamate ligase domain SD89_RS06615 PF14492 Elongation Factor G, domain II SD89_RS06615 PF03144 Elongation factor Tu domain 2 SD89_RS06615 PF00679 Elongation factor G C-terminus SD89_RS06615 PF00009 Elongation factor Tu GTP binding domain SD89_RS06620 PF00581 Rhodanese-like domain SD89_RS06625 PF00480 ROK family SD89_RS06635 PF00210 Ferritin-like domain SD89_RS06645 PF04055 Radical SAM superfamily SD89_RS06650 PF06265 Protein of unknown function (DUF1027) SD89_RS06655 PF00356 Bacterial regulatory proteins, lacI family SD89_RS06660 PF13180 PDZ domain SD89_RS06660 PF05362 Lon protease (S16) C-terminal proteolytic domain SD89_RS06665 PF01467 Cytidylyltransferase-like SD89_RS06675 PF03590 Aspartate-ammonia ligase SD89_RS06680 PF00696 Amino acid kinase family SD89_RS06685 PF01546 Peptidase family M20/M25/M40 SD89_RS06690 PF03606 C4-dicarboxylate anaerobic carrier SD89_RS06695 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SD89_RS06695 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SD89_RS06700 PF13673 Acetyltransferase (GNAT) domain SD89_RS06715 PF01316 Arginine repressor, DNA binding domain SD89_RS06715 PF02863 Arginine repressor, C-terminal domain SD89_RS06730 PF00672 HAMP domain SD89_RS06730 PF02743 Cache domain SD89_RS06730 PF06580 Histidine kinase SD89_RS06730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS06735 PF12833 Helix-turn-helix domain SD89_RS06735 PF00072 Response regulator receiver domain SD89_RS06740 PF01641 SelR domain SD89_RS06740 PF01625 Peptide methionine sulfoxide reductase SD89_RS06745 PF08534 Redoxin SD89_RS06750 PF02683 Cytochrome C biogenesis protein transmembrane region SD89_RS06760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SD89_RS06760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SD89_RS06765 PF00665 Integrase core domain SD89_RS06765 PF13276 HTH-like domain SD89_RS06765 PF13333 Integrase core domain SD89_RS06780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS06780 PF00512 His Kinase A (phospho-acceptor) domain SD89_RS06785 PF00145 C-5 cytosine-specific DNA methylase SD89_RS06790 PF01797 Transposase IS200 like SD89_RS06795 PF08264 Anticodon-binding domain of tRNA SD89_RS06795 PF00133 tRNA synthetases class I (I, L, M and V) SD89_RS06795 PF10458 Valyl tRNA synthetase tRNA binding arm SD89_RS06820 PF01609 Transposase DDE domain SD89_RS06820 PF13808 DDE_Tnp_1-associated SD89_RS06830 PF01245 Ribosomal protein L19 SD89_RS06835 PF00654 Voltage gated chloride channel SD89_RS06845 PF00258 Flavodoxin SD89_RS06850 PF02272 DHHA1 domain SD89_RS06850 PF01368 DHH family SD89_RS06855 PF01197 Ribosomal protein L31 SD89_RS06860 PF01380 SIS domain SD89_RS06865 PF07702 UTRA domain SD89_RS06865 PF00392 Bacterial regulatory proteins, gntR family SD89_RS06870 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SD89_RS06870 PF01297 Zinc-uptake complex component A periplasmic SD89_RS06875 PF03577 Peptidase family C69 SD89_RS06885 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD89_RS06885 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD89_RS06890 PF13457 GW (Gly-Tryp) dipeptide domain SD89_RS06890 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD89_RS06975 PF00574 Clp protease SD89_RS07015 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SD89_RS07075 PF03837 RecT family SD89_RS07135 PF01381 Helix-turn-helix SD89_RS07145 PF00239 Resolvase, N terminal domain SD89_RS07145 PF02796 Helix-turn-helix domain of resolvase SD89_RS07150 PF10298 WhiA N-terminal LAGLIDADG-like domain SD89_RS07150 PF14527 WhiA LAGLIDADG-like domain SD89_RS07150 PF02650 WhiA C-terminal HTH domain SD89_RS07155 PF01933 Uncharacterised protein family UPF0052 SD89_RS07160 PF03668 P-loop ATPase protein family SD89_RS07165 PF01336 OB-fold nucleic acid binding domain SD89_RS07165 PF00152 tRNA synthetases class II (D, K and N) SD89_RS07170 PF00155 Aminotransferase class I and II SD89_RS07175 PF04851 Type III restriction enzyme, res subunit SD89_RS07175 PF00929 Exonuclease SD89_RS07175 PF13307 Helicase C-terminal domain SD89_RS07185 PF00753 Metallo-beta-lactamase superfamily SD89_RS07190 PF02687 FtsX-like permease family SD89_RS07190 PF18075 FtsX extracellular domain SD89_RS07195 PF00005 ABC transporter SD89_RS07200 PF00472 RF-1 domain SD89_RS07200 PF03462 PCRF domain SD89_RS07205 PF08331 Domain of unknown function (DUF1730) SD89_RS07215 PF01081 KDPG and KHG aldolase SD89_RS07240 PF07470 Glycosyl Hydrolase Family 88 SD89_RS07245 PF03830 PTS system sorbose subfamily IIB component SD89_RS07250 PF03609 PTS system sorbose-specific iic component SD89_RS07255 PF03613 PTS system mannose/fructose/sorbose family IID component SD89_RS07265 PF00356 Bacterial regulatory proteins, lacI family SD89_RS07270 PF00690 Cation transporter/ATPase, N-terminus SD89_RS07270 PF00689 Cation transporting ATPase, C-terminus SD89_RS07280 PF01966 HD domain SD89_RS07305 PF00121 Triosephosphate isomerase SD89_RS07310 PF00009 Elongation factor Tu GTP binding domain SD89_RS07310 PF03144 Elongation factor Tu domain 2 SD89_RS07310 PF03143 Elongation factor Tu C-terminal domain SD89_RS07315 PF01098 Cell cycle protein SD89_RS07320 PF00311 Phosphoenolpyruvate carboxylase SD89_RS07325 PF01432 Peptidase family M3 SD89_RS07325 PF08439 Oligopeptidase F SD89_RS07330 PF00255 Glutathione peroxidase SD89_RS07350 PF09515 Thiamine transporter protein (Thia_YuaJ) SD89_RS07370 PF01336 OB-fold nucleic acid binding domain SD89_RS07370 PF00152 tRNA synthetases class II (D, K and N) SD89_RS07375 PF02229 Transcriptional Coactivator p15 (PC4) SD89_RS07380 PF16325 Peptidase family U32 C-terminal domain SD89_RS07380 PF01136 Peptidase family U32 SD89_RS07395 PF12732 YtxH-like protein SD89_RS07405 PF01790 Prolipoprotein diacylglyceryl transferase SD89_RS07410 PF02603 HPr Serine kinase N terminus SD89_RS07410 PF07475 HPr Serine kinase C-terminal domain SD89_RS07420 PF10263 SprT-like family SD89_RS07425 PF00575 S1 RNA binding domain SD89_RS07425 PF16921 Tex protein YqgF-like domain SD89_RS07425 PF09371 Tex-like protein N-terminal domain SD89_RS07425 PF17674 HHH domain SD89_RS07435 PF03773 Predicted permease SD89_RS07440 PF09323 Domain of unknown function (DUF1980) SD89_RS07445 PF00232 Glycosyl hydrolase family 1 SD89_RS07450 PF00367 phosphotransferase system, EIIB SD89_RS07450 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SD89_RS07450 PF02378 Phosphotransferase system, EIIC SD89_RS07455 PF00874 PRD domain SD89_RS07455 PF03123 CAT RNA binding domain SD89_RS07460 PF07690 Major Facilitator Superfamily SD89_RS07465 PF02881 SRP54-type protein, helical bundle domain SD89_RS07465 PF00448 SRP54-type protein, GTPase domain SD89_RS07485 PF13683 Integrase core domain SD89_RS07485 PF01610 Transposase SD89_RS07490 PF13393 Histidyl-tRNA synthetase SD89_RS07490 PF03129 Anticodon binding domain SD89_RS07495 PF02016 LD-carboxypeptidase N-terminal domain SD89_RS07495 PF17676 LD-carboxypeptidase C-terminal domain SD89_RS07500 PF02655 ATP-grasp domain SD89_RS07500 PF00206 Lyase SD89_RS07505 PF00152 tRNA synthetases class II (D, K and N) SD89_RS07505 PF01336 OB-fold nucleic acid binding domain SD89_RS07520 PF04860 Phage portal protein SD89_RS07565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SD89_RS07565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SD89_RS07565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SD89_RS07585 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) SD89_RS07605 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SD89_RS07605 PF08501 Shikimate dehydrogenase substrate binding domain SD89_RS07615 PF02463 RecF/RecN/SMC N terminal domain SD89_RS07615 PF06470 SMC proteins Flexible Hinge Domain SD89_RS07620 PF14622 Ribonuclease-III-like SD89_RS07620 PF00035 Double-stranded RNA binding motif SD89_RS07625 PF00753 Metallo-beta-lactamase superfamily SD89_RS07630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS07630 PF13426 PAS domain SD89_RS07630 PF00672 HAMP domain SD89_RS07630 PF00512 His Kinase A (phospho-acceptor) domain SD89_RS07635 PF00072 Response regulator receiver domain SD89_RS07635 PF00486 Transcriptional regulatory protein, C terminal SD89_RS07650 PF02803 Thiolase, C-terminal domain SD89_RS07650 PF00108 Thiolase, N-terminal domain SD89_RS07670 PF00005 ABC transporter SD89_RS07675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD89_RS07675 PF02824 TGS domain SD89_RS07675 PF03129 Anticodon binding domain SD89_RS07675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD89_RS07680 PF00534 Glycosyl transferases group 1 SD89_RS07680 PF13439 Glycosyltransferase Family 4 SD89_RS07685 PF00534 Glycosyl transferases group 1 SD89_RS07685 PF13439 Glycosyltransferase Family 4 SD89_RS07690 PF00356 Bacterial regulatory proteins, lacI family SD89_RS07695 PF01321 Creatinase/Prolidase N-terminal domain SD89_RS07695 PF00557 Metallopeptidase family M24 SD89_RS07700 PF00881 Nitroreductase family SD89_RS07705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD89_RS07710 PF00535 Glycosyl transferase family 2 SD89_RS07725 PF01470 Pyroglutamyl peptidase SD89_RS07735 PF01668 SmpB protein SD89_RS07740 PF00773 RNB domain SD89_RS07740 PF08206 Ribonuclease B OB domain SD89_RS07740 PF17876 Cold shock domain SD89_RS07740 PF00575 S1 RNA binding domain SD89_RS07750 PF07690 Major Facilitator Superfamily SD89_RS07750 PF00083 Sugar (and other) transporter SD89_RS07755 PF05872 Bacterial protein of unknown function (DUF853) SD89_RS07760 PF01121 Dephospho-CoA kinase SD89_RS07765 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SD89_RS07765 PF06827 Zinc finger found in FPG and IleRS SD89_RS07765 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SD89_RS07835 PF00293 NUDIX domain SD89_RS07835 PF13344 Haloacid dehalogenase-like hydrolase SD89_RS07840 PF01926 50S ribosome-binding GTPase SD89_RS07840 PF07650 KH domain SD89_RS07845 PF01219 Prokaryotic diacylglycerol kinase SD89_RS07850 PF02130 Uncharacterized protein family UPF0054 SD89_RS07855 PF03167 Uracil DNA glycosylase superfamily SD89_RS07860 PF02562 PhoH-like protein SD89_RS07865 PF06100 MCRA family SD89_RS07875 PF06855 YozE SAM-like fold SD89_RS07880 PF01625 Peptide methionine sulfoxide reductase SD89_RS07890 PF01765 Ribosome recycling factor SD89_RS07895 PF00696 Amino acid kinase family SD89_RS07900 PF00687 Ribosomal protein L1p/L10e family SD89_RS07905 PF03946 Ribosomal protein L11, N-terminal domain SD89_RS07905 PF00298 Ribosomal protein L11, RNA binding domain SD89_RS07915 PF01580 FtsK/SpoIIIE family SD89_RS07915 PF09397 Ftsk gamma domain SD89_RS07915 PF17854 FtsK alpha domain SD89_RS07920 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SD89_RS07925 PF00950 ABC 3 transport family SD89_RS07930 PF00005 ABC transporter SD89_RS07935 PF01297 Zinc-uptake complex component A periplasmic SD89_RS07950 PF01048 Phosphorylase superfamily SD89_RS07960 PF00293 NUDIX domain SD89_RS07965 PF12804 MobA-like NTP transferase domain SD89_RS07965 PF14602 Hexapeptide repeat of succinyl-transferase SD89_RS07965 PF00132 Bacterial transferase hexapeptide (six repeats) SD89_RS07970 PF07690 Major Facilitator Superfamily SD89_RS07975 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SD89_RS07975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SD89_RS08025 PF01609 Transposase DDE domain SD89_RS08025 PF13808 DDE_Tnp_1-associated SD89_RS08040 PF03496 ADP-ribosyltransferase exoenzyme SD89_RS08045 PF02867 Ribonucleotide reductase, barrel domain SD89_RS08045 PF00317 Ribonucleotide reductase, all-alpha domain SD89_RS08045 PF08343 Ribonucleotide reductase N-terminal SD89_RS08050 PF07972 NrdI Flavodoxin like SD89_RS08055 PF00268 Ribonucleotide reductase, small chain SD89_RS08060 PF09334 tRNA synthetases class I (M) SD89_RS08060 PF01588 Putative tRNA binding domain SD89_RS08075 PF06280 Fn3-like domain SD89_RS08075 PF00082 Subtilase family SD89_RS08075 PF02225 PA domain SD89_RS08075 PF00746 LPXTG cell wall anchor motif SD89_RS08080 PF01070 FMN-dependent dehydrogenase SD89_RS08090 PF03372 Endonuclease/Exonuclease/phosphatase family SD89_RS08095 PF03960 ArsC family SD89_RS08100 PF03932 CutC family SD89_RS08110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SD89_RS08115 PF06156 Initiation control protein YabA SD89_RS08120 PF09115 DNA polymerase III, delta subunit, C terminal SD89_RS08125 PF02223 Thymidylate kinase SD89_RS08130 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SD89_RS08135 PF00574 Clp protease SD89_RS08145 PF01943 Polysaccharide biosynthesis protein SD89_RS08145 PF14667 Polysaccharide biosynthesis C-terminal domain SD89_RS08150 PF02875 Mur ligase family, glutamate ligase domain SD89_RS08150 PF08245 Mur ligase middle domain SD89_RS08155 PF00005 ABC transporter SD89_RS08160 PF01497 Periplasmic binding protein SD89_RS08165 PF01032 FecCD transport family SD89_RS08170 PF01032 FecCD transport family SD89_RS08180 PF02833 DHHA2 domain SD89_RS08180 PF01368 DHH family SD89_RS08185 PF04055 Radical SAM superfamily SD89_RS08190 PF00571 CBS domain SD89_RS08190 PF03471 Transporter associated domain SD89_RS08190 PF01595 Cyclin M transmembrane N-terminal domain SD89_RS08195 PF06962 Putative rRNA methylase SD89_RS08200 PF04055 Radical SAM superfamily SD89_RS08200 PF16199 Radical_SAM C-terminal domain SD89_RS08205 PF01569 PAP2 superfamily SD89_RS08210 PF12822 ECF transporter, substrate-specific component SD89_RS08215 PF00588 SpoU rRNA Methylase family SD89_RS08220 PF01809 Putative membrane protein insertion efficiency factor SD89_RS08225 PF00849 RNA pseudouridylate synthase SD89_RS08225 PF01479 S4 domain SD89_RS08230 PF04079 Segregation and condensation complex subunit ScpB SD89_RS08235 PF02616 Segregation and condensation protein ScpA SD89_RS08255 PF01725 Ham1 family SD89_RS08260 PF01177 Asp/Glu/Hydantoin racemase SD89_RS08265 PF03672 Uncharacterised protein family (UPF0154) SD89_RS08270 PF01027 Inhibitor of apoptosis-promoting Bax1 SD89_RS08280 PF08032 RNA 2'-O ribose methyltransferase substrate binding SD89_RS08280 PF00588 SpoU rRNA Methylase family SD89_RS08285 PF00708 Acylphosphatase SD89_RS08290 PF02096 60Kd inner membrane protein SD89_RS08295 PF03449 Transcription elongation factor, N-terminal SD89_RS08295 PF01272 Transcription elongation factor, GreA/GreB, C-term SD89_RS08300 PF02618 YceG-like family SD89_RS08310 PF01225 Mur ligase family, catalytic domain SD89_RS08310 PF02875 Mur ligase family, glutamate ligase domain SD89_RS08310 PF08245 Mur ligase middle domain SD89_RS08320 PF00176 SNF2 family N-terminal domain SD89_RS08320 PF12419 SNF2 Helicase protein SD89_RS08320 PF00271 Helicase conserved C-terminal domain SD89_RS08325 PF01926 50S ribosome-binding GTPase SD89_RS08325 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SD89_RS08330 PF01695 IstB-like ATP binding protein SD89_RS08330 PF07319 Primosomal protein DnaI N-terminus SD89_RS08340 PF03477 ATP cone domain SD89_RS08345 PF00512 His Kinase A (phospho-acceptor) domain SD89_RS08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS08345 PF18719 ArlS sensor domain SD89_RS08350 PF00486 Transcriptional regulatory protein, C terminal SD89_RS08350 PF00072 Response regulator receiver domain SD89_RS08360 PF01435 Peptidase family M48 SD89_RS08365 PF04011 LemA family SD89_RS08370 PF02527 rRNA small subunit methyltransferase G SD89_RS08375 PF02386 Cation transport protein SD89_RS08380 PF02080 TrkA-C domain SD89_RS08380 PF02254 TrkA-N domain SD89_RS08385 PF00375 Sodium:dicarboxylate symporter family SD89_RS08390 PF05525 Branched-chain amino acid transport protein SD89_RS08395 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS08400 PF00005 ABC transporter SD89_RS08400 PF09383 NIL domain SD89_RS08405 PF03180 NLPA lipoprotein SD89_RS08410 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD89_RS08415 PF01709 Transcriptional regulator SD89_RS08420 PF05636 HIGH Nucleotidyl Transferase SD89_RS08425 PF13649 Methyltransferase domain SD89_RS08435 PF01966 HD domain SD89_RS08440 PF01467 Cytidylyltransferase-like SD89_RS08445 PF01985 CRS1 / YhbY (CRM) domain SD89_RS08450 PF01926 50S ribosome-binding GTPase SD89_RS08495 PF02595 Glycerate kinase family SD89_RS08500 PF18766 SWI2/SNF2 ATPase SD89_RS08500 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SD89_RS08500 PF12008 Type I restriction and modification enzyme - subunit R C terminal SD89_RS08510 PF02384 N-6 DNA Methylase SD89_RS08510 PF12161 HsdM N-terminal domain SD89_RS08515 PF00072 Response regulator receiver domain SD89_RS08515 PF00486 Transcriptional regulatory protein, C terminal SD89_RS08525 PF02687 FtsX-like permease family SD89_RS08530 PF00005 ABC transporter SD89_RS08535 PF00005 ABC transporter SD89_RS08535 PF00664 ABC transporter transmembrane region SD89_RS08545 PF04604 Type-A lantibiotic SD89_RS08550 PF00232 Glycosyl hydrolase family 1 SD89_RS08555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD89_RS08555 PF02378 Phosphotransferase system, EIIC SD89_RS08560 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SD89_RS08565 PF01791 DeoC/LacD family aldolase SD89_RS08570 PF00294 pfkB family carbohydrate kinase SD89_RS08575 PF02502 Ribose/Galactose Isomerase SD89_RS08580 PF02502 Ribose/Galactose Isomerase SD89_RS08590 PF00455 DeoR C terminal sensor domain SD89_RS08590 PF08220 DeoR-like helix-turn-helix domain SD89_RS08610 PF00380 Ribosomal protein S9/S16 SD89_RS08615 PF00572 Ribosomal protein L13 SD89_RS08620 PF01381 Helix-turn-helix SD89_RS08630 PF02645 Uncharacterised protein, DegV family COG1307 SD89_RS08640 PF08032 RNA 2'-O ribose methyltransferase substrate binding SD89_RS08640 PF00588 SpoU rRNA Methylase family SD89_RS08650 PF00636 Ribonuclease III domain SD89_RS08655 PF09190 DALR domain SD89_RS08655 PF01406 tRNA synthetases class I (C) catalytic domain SD89_RS08670 PF06426 Serine acetyltransferase, N-terminal SD89_RS08670 PF00132 Bacterial transferase hexapeptide (six repeats) SD89_RS08680 PF03725 3' exoribonuclease family, domain 2 SD89_RS08680 PF01138 3' exoribonuclease family, domain 1 SD89_RS08680 PF00575 S1 RNA binding domain SD89_RS08680 PF00013 KH domain SD89_RS08680 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SD89_RS08685 PF00923 Transaldolase/Fructose-6-phosphate aldolase SD89_RS08690 PF03611 PTS system sugar-specific permease component SD89_RS08695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD89_RS08700 PF08279 HTH domain SD89_RS08700 PF05043 Mga helix-turn-helix domain SD89_RS08700 PF00874 PRD domain SD89_RS08700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD89_RS08700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD89_RS08705 PF00312 Ribosomal protein S15 SD89_RS08720 PF01327 Polypeptide deformylase SD89_RS08725 PF03358 NADPH-dependent FMN reductase SD89_RS08730 PF01047 MarR family SD89_RS08735 PF14480 DNA polymerase III polC-type N-terminus I SD89_RS08735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SD89_RS08735 PF07733 Bacterial DNA polymerase III alpha NTPase domain SD89_RS08735 PF11490 DNA polymerase III polC-type N-terminus II SD89_RS08735 PF00929 Exonuclease SD89_RS08735 PF02811 PHP domain SD89_RS08735 PF14579 Helix-hairpin-helix motif SD89_RS08740 PF03129 Anticodon binding domain SD89_RS08740 PF04073 Aminoacyl-tRNA editing domain SD89_RS08740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD89_RS08745 PF13180 PDZ domain SD89_RS08745 PF02163 Peptidase family M50 SD89_RS08755 PF01255 Putative undecaprenyl diphosphate synthase SD89_RS08760 PF02699 Preprotein translocase subunit SD89_RS08770 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SD89_RS08770 PF00128 Alpha amylase, catalytic domain SD89_RS08770 PF17999 Pullulanase N1-terminal domain SD89_RS08775 PF00128 Alpha amylase, catalytic domain SD89_RS08780 PF00005 ABC transporter SD89_RS08780 PF03459 TOBE domain SD89_RS08780 PF17912 MalK OB fold domain SD89_RS08785 PF13556 PucR C-terminal helix-turn-helix domain SD89_RS08790 PF02821 Staphylokinase/Streptokinase family SD89_RS08795 PF02580 D-Tyr-tRNA(Tyr) deacylase SD89_RS08800 PF04607 Region found in RelA / SpoT proteins SD89_RS08800 PF13291 ACT domain SD89_RS08800 PF02824 TGS domain SD89_RS08805 PF04650 YSIRK type signal peptide SD89_RS08805 PF00746 LPXTG cell wall anchor motif SD89_RS08810 PF07972 NrdI Flavodoxin like SD89_RS08815 PF03372 Endonuclease/Exonuclease/phosphatase family SD89_RS08820 PF00367 phosphotransferase system, EIIB SD89_RS08820 PF02378 Phosphotransferase system, EIIC SD89_RS08820 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SD89_RS08825 PF04452 RNA methyltransferase SD89_RS08840 PF04715 Anthranilate synthase component I, N terminal region SD89_RS08840 PF00425 chorismate binding enzyme SD89_RS08845 PF00117 Glutamine amidotransferase class-I SD89_RS08850 PF12002 MgsA AAA+ ATPase C terminal SD89_RS08850 PF05496 Holliday junction DNA helicase RuvB P-loop domain SD89_RS08850 PF16193 AAA C-terminal domain SD89_RS08860 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD89_RS08860 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD89_RS08870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SD89_RS08875 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS08880 PF00528 Binding-protein-dependent transport system inner membrane component SD89_RS08885 PF00005 ABC transporter SD89_RS08885 PF12558 ATP-binding cassette cobalt transporter SD89_RS08890 PF00005 ABC transporter SD89_RS08895 PF05532 CsbD-like SD89_RS08905 PF01297 Zinc-uptake complex component A periplasmic SD89_RS08915 PF00082 Subtilase family SD89_RS08915 PF06280 Fn3-like domain SD89_RS08915 PF02225 PA domain SD89_RS08920 PF04650 YSIRK type signal peptide SD89_RS08920 PF02370 M protein repeat SD89_RS08920 PF00746 LPXTG cell wall anchor motif SD89_RS08925 PF00746 LPXTG cell wall anchor motif SD89_RS08925 PF02370 M protein repeat SD89_RS08925 PF04650 YSIRK type signal peptide SD89_RS08930 PF00746 LPXTG cell wall anchor motif SD89_RS08930 PF04650 YSIRK type signal peptide SD89_RS08935 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SD89_RS08935 PF05043 Mga helix-turn-helix domain SD89_RS08935 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SD89_RS08945 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD89_RS08945 PF05257 CHAP domain SD89_RS08950 PF00512 His Kinase A (phospho-acceptor) domain SD89_RS08950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD89_RS08950 PF13493 Domain of unknown function (DUF4118) SD89_RS08950 PF02702 Osmosensitive K+ channel His kinase sensor domain SD89_RS08955 PF00486 Transcriptional regulatory protein, C terminal SD89_RS08955 PF00072 Response regulator receiver domain SD89_RS08960 PF02687 FtsX-like permease family SD89_RS08960 PF12704 MacB-like periplasmic core domain SD89_RS08965 PF00005 ABC transporter SD89_RS09005 PF13145 PPIC-type PPIASE domain SD89_RS09015 PF13734 Spi protease inhibitor SD89_RS09015 PF01640 Peptidase C10 family SD89_RS09030 PF04608 Phosphatidylglycerophosphatase A SD89_RS09035 PF00465 Iron-containing alcohol dehydrogenase SD89_RS09040 PF00923 Transaldolase/Fructose-6-phosphate aldolase SD89_RS09045 PF01228 Glycine radical SD89_RS09045 PF02901 Pyruvate formate lyase-like SD89_RS09050 PF02378 Phosphotransferase system, EIIC SD89_RS09055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD89_RS09060 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SD89_RS09065 PF04198 Putative sugar-binding domain SD89_RS09070 PF08220 DeoR-like helix-turn-helix domain SD89_RS09070 PF00455 DeoR C terminal sensor domain SD89_RS09075 PF04055 Radical SAM superfamily SD89_RS09085 PF00912 Transglycosylase SD89_RS09085 PF00905 Penicillin binding protein transpeptidase domain SD89_RS09100 PF01479 S4 domain SD89_RS09100 PF00849 RNA pseudouridylate synthase SD89_RS09110 PF03577 Peptidase family C69 SD89_RS09120 PF00118 TCP-1/cpn60 chaperonin family SD89_RS09125 PF00166 Chaperonin 10 Kd subunit SD89_RS09130 PF10431 C-terminal, D2-small domain, of ClpB protein SD89_RS09130 PF00004 ATPase family associated with various cellular activities (AAA) SD89_RS09130 PF07724 AAA domain (Cdc48 subfamily) SD89_RS09130 PF02861 Clp amino terminal domain, pathogenicity island component SD89_RS09130 PF17871 AAA lid domain SD89_RS09135 PF05848 CtsR N-terminal HTH domain SD89_RS09135 PF17727 CtsR C-terminal dimerization domain SD89_RS09140 PF00313 'Cold-shock' DNA-binding domain SD89_RS09150 PF00578 AhpC/TSA family SD89_RS09155 PF13192 Thioredoxin domain SD89_RS09155 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD89_RS09160 PF01979 Amidohydrolase family SD89_RS09165 PF01175 Urocanase Rossmann-like domain SD89_RS09165 PF17391 Urocanase N-terminal domain SD89_RS09165 PF17392 Urocanase C-terminal domain SD89_RS09170 PF07837 Formiminotransferase domain, N-terminal subdomain SD89_RS09170 PF02971 Formiminotransferase domain SD89_RS09175 PF04961 Formiminotransferase-cyclodeaminase SD89_RS09180 PF01268 Formate--tetrahydrofolate ligase SD89_RS09190 PF13520 Amino acid permease SD89_RS09195 PF00221 Aromatic amino acid lyase SD89_RS09200 PF00491 Arginase family SD89_RS09210 PF00318 Ribosomal protein S2 SD89_RS09215 PF00889 Elongation factor TS SD89_RS09220 PF05649 Peptidase family M13 SD89_RS09220 PF01431 Peptidase family M13 SD89_RS09225 PF16657 Maltogenic Amylase, C-terminal domain SD89_RS09225 PF00128 Alpha amylase, catalytic domain SD89_RS09230 PF02378 Phosphotransferase system, EIIC SD89_RS09230 PF00367 phosphotransferase system, EIIB SD89_RS09235 PF00392 Bacterial regulatory proteins, gntR family SD89_RS09235 PF07702 UTRA domain SD89_RS09245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD89_RS09250 PF03883 Peroxide stress protein YaaA SD89_RS09265 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SD89_RS09270 PF03477 ATP cone domain SD89_RS09270 PF13597 Anaerobic ribonucleoside-triphosphate reductase SD89_RS09280 PF06949 Protein of unknown function (DUF1292) SD89_RS09285 PF03652 Holliday junction resolvase SD89_RS09290 PF06135 IreB regulatory phosphoprotein SD89_RS09295 PF03960 ArsC family SD89_RS09300 PF00154 recA bacterial DNA recombination protein SD89_RS09305 PF02464 Competence-damaged protein SD89_RS09305 PF00994 Probable molybdopterin binding domain SD89_RS09305 PF18146 Damage-inducible protein CinA KH domain SD89_RS09310 PF13673 Acetyltransferase (GNAT) domain SD89_RS09310 PF00958 GMP synthase C terminal domain SD89_RS09310 PF13302 Acetyltransferase (GNAT) domain SD89_RS09310 PF03352 Methyladenine glycosylase SD89_RS09310 PF00117 Glutamine amidotransferase class-I SD89_RS09315 PF07499 RuvA, C-terminal domain SD89_RS09315 PF01330 RuvA N terminal domain SD89_RS09325 PF01119 DNA mismatch repair protein, C-terminal domain SD89_RS09325 PF08676 MutL C terminal dimerisation domain SD89_RS09330 PF05192 MutS domain III SD89_RS09330 PF05190 MutS family domain IV SD89_RS09330 PF00488 MutS domain V SD89_RS09330 PF01624 MutS domain I SD89_RS09330 PF05188 MutS domain II SD89_RS09340 PF02863 Arginine repressor, C-terminal domain SD89_RS09340 PF01316 Arginine repressor, DNA binding domain SD89_RS09345 PF00750 tRNA synthetases class I (R) SD89_RS09345 PF03485 Arginyl tRNA synthetase N terminal domain SD89_RS09345 PF05746 DALR anticodon binding domain SD89_RS09355 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD89_RS09355 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD89_RS09360 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD89_RS09360 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD89_RS09365 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD89_RS09365 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD89_RS09370 PF01336 OB-fold nucleic acid binding domain SD89_RS09370 PF00152 tRNA synthetases class II (D, K and N) SD89_RS09370 PF02938 GAD domain SD89_RS09375 PF13393 Histidyl-tRNA synthetase SD89_RS09375 PF03129 Anticodon binding domain SD89_RS09380 PF01783 Ribosomal L32p protein family SD89_RS09385 PF00471 Ribosomal protein L33 SD89_RS09395 PF01022 Bacterial regulatory protein, arsR family SD89_RS09430 PF00293 NUDIX domain SD89_RS09435 PF03551 Transcriptional regulator PadR-like family SD89_RS09460 PF00163 Ribosomal protein S4/S9 N-terminal domain SD89_RS09460 PF01479 S4 domain SD89_RS09480 PF00772 DnaB-like helicase N terminal domain SD89_RS09480 PF03796 DnaB-like helicase C terminal domain SD89_RS09485 PF01281 Ribosomal protein L9, N-terminal domain SD89_RS09485 PF03948 Ribosomal protein L9, C-terminal domain SD89_RS09490 PF01368 DHH family SD89_RS09490 PF02272 DHHA1 domain SD89_RS09495 PF01134 Glucose inhibited division protein A SD89_RS09495 PF13932 GidA associated domain SD89_RS09515 PF01842 ACT domain SD89_RS09515 PF03315 Serine dehydratase beta chain SD89_RS09520 PF03313 Serine dehydratase alpha chain SD89_RS09525 PF06737 Transglycosylase-like domain SD89_RS09530 PF02361 Cobalt transport protein SD89_RS09535 PF00005 ABC transporter SD89_RS09540 PF00005 ABC transporter SD89_RS09545 PF01066 CDP-alcohol phosphatidyltransferase SD89_RS09555 PF05193 Peptidase M16 inactive domain SD89_RS09555 PF00675 Insulinase (Peptidase family M16) SD89_RS09565 PF00535 Glycosyl transferase family 2 SD89_RS09570 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SD89_RS09570 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SD89_RS09570 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SD89_RS09575 PF00483 Nucleotidyl transferase SD89_RS09585 PF02463 RecF/RecN/SMC N terminal domain SD89_RS09590 PF06800 Sugar transport protein SD89_RS09595 PF00478 IMP dehydrogenase / GMP reductase domain SD89_RS09595 PF00571 CBS domain SD89_RS09600 PF00579 tRNA synthetases class I (W and Y) SD89_RS09605 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD89_RS09605 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD89_RS09610 PF12848 ABC transporter SD89_RS09610 PF00005 ABC transporter SD89_RS09630 PF13936 Helix-turn-helix domain SD89_RS09640 PF02590 Predicted SPOUT methyltransferase SD89_RS09645 PF13180 PDZ domain