locus-tag class description SD90_RS00005 PF17762 HTH domain found in ParB protein SD90_RS00005 PF02195 ParB-like nuclease domain SD90_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix SD90_RS00010 PF00308 Bacterial dnaA protein SD90_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain SD90_RS00015 PF02767 DNA polymerase III beta subunit, central domain SD90_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain SD90_RS00025 PF06071 Protein of unknown function (DUF933) SD90_RS00025 PF01926 50S ribosome-binding GTPase SD90_RS00030 PF01195 Peptidyl-tRNA hydrolase SD90_RS00035 PF17757 UvrB interaction domain SD90_RS00035 PF00270 DEAD/DEAH box helicase SD90_RS00035 PF02559 CarD-like/TRCF domain SD90_RS00035 PF00271 Helicase conserved C-terminal domain SD90_RS00035 PF03461 TRCF domain SD90_RS00040 PF01479 S4 domain SD90_RS00055 PF01171 PP-loop family SD90_RS00060 PF00156 Phosphoribosyl transferase domain SD90_RS00065 PF00004 ATPase family associated with various cellular activities (AAA) SD90_RS00065 PF17862 AAA+ lid domain SD90_RS00065 PF06480 FtsH Extracellular SD90_RS00065 PF01434 Peptidase family M41 SD90_RS00070 PF13520 Amino acid permease SD90_RS00245 PF05257 CHAP domain SD90_RS00245 PF01476 LysM domain SD90_RS00250 PF14572 Phosphoribosyl synthetase-associated domain SD90_RS00250 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SD90_RS00255 PF11967 Recombination protein O N terminal SD90_RS00255 PF02565 Recombination protein O C terminal SD90_RS00260 PF02504 Fatty acid synthesis protein SD90_RS00265 PF00550 Phosphopantetheine attachment site SD90_RS00270 PF01259 SAICAR synthetase SD90_RS00275 PF00586 AIR synthase related protein, N-terminal domain SD90_RS00275 PF02769 AIR synthase related protein, C-terminal domain SD90_RS00275 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SD90_RS00280 PF13537 Glutamine amidotransferase domain SD90_RS00280 PF00156 Phosphoribosyl transferase domain SD90_RS00285 PF02769 AIR synthase related protein, C-terminal domain SD90_RS00285 PF00586 AIR synthase related protein, N-terminal domain SD90_RS00290 PF00551 Formyl transferase SD90_RS00295 PF02142 MGS-like domain SD90_RS00295 PF01808 AICARFT/IMPCHase bienzyme SD90_RS00305 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SD90_RS00305 PF02843 Phosphoribosylglycinamide synthetase, C domain SD90_RS00305 PF02844 Phosphoribosylglycinamide synthetase, N domain SD90_RS00310 PF00731 AIR carboxylase SD90_RS00315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SD90_RS00315 PF02222 ATP-grasp domain SD90_RS00325 PF10397 Adenylosuccinate lyase C-terminus SD90_RS00325 PF00206 Lyase SD90_RS00335 PF17864 RuvB AAA lid domain SD90_RS00335 PF05491 RuvB C-terminal winged helix domain SD90_RS00335 PF05496 Holliday junction DNA helicase RuvB P-loop domain SD90_RS00340 PF01451 Low molecular weight phosphotyrosine protein phosphatase SD90_RS00350 PF01757 Acyltransferase family SD90_RS00355 PF00465 Iron-containing alcohol dehydrogenase SD90_RS00355 PF00171 Aldehyde dehydrogenase family SD90_RS00360 PF08240 Alcohol dehydrogenase GroES-like domain SD90_RS00360 PF00107 Zinc-binding dehydrogenase SD90_RS00365 PF01554 MatE SD90_RS00370 PF00338 Ribosomal protein S10p/S20e SD90_RS00375 PF00297 Ribosomal protein L3 SD90_RS00380 PF00573 Ribosomal protein L4/L1 family SD90_RS00385 PF00276 Ribosomal protein L23 SD90_RS00390 PF03947 Ribosomal Proteins L2, C-terminal domain SD90_RS00390 PF00181 Ribosomal Proteins L2, RNA binding domain SD90_RS00395 PF00203 Ribosomal protein S19 SD90_RS00400 PF00237 Ribosomal protein L22p/L17e SD90_RS00405 PF07650 KH domain SD90_RS00405 PF00189 Ribosomal protein S3, C-terminal domain SD90_RS00410 PF00252 Ribosomal protein L16p/L10e SD90_RS00415 PF00831 Ribosomal L29 protein SD90_RS00420 PF00366 Ribosomal protein S17 SD90_RS00425 PF00238 Ribosomal protein L14p/L23e SD90_RS00430 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SD90_RS00430 PF00467 KOW motif SD90_RS00435 PF00673 ribosomal L5P family C-terminus SD90_RS00435 PF00281 Ribosomal protein L5 SD90_RS00440 PF00253 Ribosomal protein S14p/S29e SD90_RS00445 PF00410 Ribosomal protein S8 SD90_RS00450 PF00347 Ribosomal protein L6 SD90_RS00455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SD90_RS00460 PF00333 Ribosomal protein S5, N-terminal domain SD90_RS00460 PF03719 Ribosomal protein S5, C-terminal domain SD90_RS00465 PF00327 Ribosomal protein L30p/L7e SD90_RS00470 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SD90_RS00475 PF00344 SecY translocase SD90_RS00485 PF01176 Translation initiation factor 1A / IF-1 SD90_RS00490 PF00416 Ribosomal protein S13/S18 SD90_RS00495 PF00411 Ribosomal protein S11 SD90_RS00500 PF01000 RNA polymerase Rpb3/RpoA insert domain SD90_RS00500 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SD90_RS00500 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SD90_RS00505 PF01196 Ribosomal protein L17 SD90_RS00595 PF08544 GHMP kinases C terminal SD90_RS00595 PF00288 GHMP kinases N terminal domain SD90_RS00600 PF00288 GHMP kinases N terminal domain SD90_RS00600 PF08544 GHMP kinases C terminal SD90_RS00605 PF01047 MarR family SD90_RS00610 PF00005 ABC transporter SD90_RS00615 PF00950 ABC 3 transport family SD90_RS00625 PF00579 tRNA synthetases class I (W and Y) SD90_RS00625 PF01479 S4 domain SD90_RS00630 PF00912 Transglycosylase SD90_RS00630 PF00905 Penicillin binding protein transpeptidase domain SD90_RS00635 PF00562 RNA polymerase Rpb2, domain 6 SD90_RS00635 PF10385 RNA polymerase beta subunit external 1 domain SD90_RS00635 PF04565 RNA polymerase Rpb2, domain 3 SD90_RS00635 PF04561 RNA polymerase Rpb2, domain 2 SD90_RS00635 PF04563 RNA polymerase beta subunit SD90_RS00635 PF04560 RNA polymerase Rpb2, domain 7 SD90_RS00640 PF04998 RNA polymerase Rpb1, domain 5 SD90_RS00640 PF05000 RNA polymerase Rpb1, domain 4 SD90_RS00640 PF04983 RNA polymerase Rpb1, domain 3 SD90_RS00640 PF00623 RNA polymerase Rpb1, domain 2 SD90_RS00640 PF04997 RNA polymerase Rpb1, domain 1 SD90_RS00650 PF00437 Type II/IV secretion system protein SD90_RS00655 PF00482 Type II secretion system (T2SS), protein F SD90_RS00660 PF07963 Prokaryotic N-terminal methylation motif SD90_RS00690 PF00871 Acetokinase family SD90_RS00700 PF14748 Pyrroline-5-carboxylate reductase dimerisation SD90_RS00700 PF03807 NADP oxidoreductase coenzyme F420-dependent SD90_RS00705 PF05343 M42 glutamyl aminopeptidase SD90_RS00715 PF00085 Thioredoxin SD90_RS00720 PF01588 Putative tRNA binding domain SD90_RS00720 PF14794 Domain of unknown function (DUF4479) SD90_RS00725 PF00436 Single-strand binding protein family SD90_RS00730 PF01712 Deoxynucleoside kinase SD90_RS00735 PF01207 Dihydrouridine synthase (Dus) SD90_RS00740 PF01430 Hsp33 protein SD90_RS00750 PF17802 Prealbumin-like fold domain SD90_RS00750 PF08341 Thioester domain SD90_RS00760 PF12892 Spy0128-like isopeptide containing domain SD90_RS00765 PF04203 Sortase domain SD90_RS00790 PF02667 Short chain fatty acid transporter SD90_RS00795 PF03466 LysR substrate binding domain SD90_RS00795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD90_RS00800 PF00108 Thiolase, N-terminal domain SD90_RS00800 PF02803 Thiolase, C-terminal domain SD90_RS00805 PF01144 Coenzyme A transferase SD90_RS00810 PF01144 Coenzyme A transferase SD90_RS00820 PF01042 Endoribonuclease L-PSP SD90_RS00835 PF01496 V-type ATPase 116kDa subunit family SD90_RS00840 PF00137 ATP synthase subunit C SD90_RS00850 PF01992 ATP synthase (C/AC39) subunit SD90_RS00855 PF01990 ATP synthase (F/14-kDa) subunit SD90_RS00860 PF16886 ATPsynthase alpha/beta subunit N-term extension SD90_RS00860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD90_RS00860 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD90_RS00865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD90_RS00865 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD90_RS00870 PF01813 ATP synthase subunit D SD90_RS00885 PF00709 Adenylosuccinate synthetase SD90_RS00890 PF02608 ABC transporter substrate-binding protein PnrA-like SD90_RS00895 PF02357 Transcription termination factor nusG SD90_RS00895 PF00467 KOW motif SD90_RS00910 PF01289 Thiol-activated cytolysin SD90_RS00910 PF17440 Thiol-activated cytolysin beta sandwich domain SD90_RS00930 PF01053 Cys/Met metabolism PLP-dependent enzyme SD90_RS00935 PF08264 Anticodon-binding domain of tRNA SD90_RS00935 PF00133 tRNA synthetases class I (I, L, M and V) SD90_RS00935 PF13603 Leucyl-tRNA synthetase, Domain 2 SD90_RS00935 PF09334 tRNA synthetases class I (M) SD90_RS00940 PF03611 PTS system sugar-specific permease component SD90_RS00945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD90_RS00950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD90_RS00955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SD90_RS00960 PF01261 Xylose isomerase-like TIM barrel SD90_RS00965 PF00596 Class II Aldolase and Adducin N-terminal domain SD90_RS00980 PF00571 CBS domain SD90_RS00980 PF00005 ABC transporter SD90_RS00985 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS00990 PF00476 DNA polymerase family A SD90_RS00990 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SD90_RS00990 PF01367 5'-3' exonuclease, C-terminal SAM fold SD90_RS01000 PF01475 Ferric uptake regulator family SD90_RS01010 PF01702 Queuine tRNA-ribosyltransferase SD90_RS01015 PF02632 BioY family SD90_RS01020 PF12706 Beta-lactamase superfamily domain SD90_RS01025 PF14437 MafB19-like deaminase SD90_RS01035 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD90_RS01035 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD90_RS01040 PF00342 Phosphoglucose isomerase SD90_RS01050 PF01694 Rhomboid family SD90_RS01055 PF00483 Nucleotidyl transferase SD90_RS01060 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SD90_RS01060 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SD90_RS01070 PF00005 ABC transporter SD90_RS01070 PF00664 ABC transporter transmembrane region SD90_RS01075 PF00664 ABC transporter transmembrane region SD90_RS01075 PF00005 ABC transporter SD90_RS01080 PF02677 Epoxyqueuosine reductase QueH SD90_RS01085 PF00692 dUTPase SD90_RS01090 PF18073 Rubredoxin metal binding domain SD90_RS01095 PF00484 Carbonic anhydrase SD90_RS01100 PF01987 Mitochondrial biogenesis AIM24 SD90_RS01105 PF00749 tRNA synthetases class I (E and Q), catalytic domain SD90_RS01110 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SD90_RS01110 PF17203 Single cache domain 3 SD90_RS01110 PF00989 PAS fold SD90_RS01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS01125 PF00825 Ribonuclease P SD90_RS01130 PF02096 60Kd inner membrane protein SD90_RS01135 PF14804 Jag N-terminus SD90_RS01135 PF01424 R3H domain SD90_RS01140 PF00468 Ribosomal protein L34 SD90_RS01145 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SD90_RS01155 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS01160 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS01170 PF00701 Dihydrodipicolinate synthetase family SD90_RS01175 PF00480 ROK family SD90_RS01185 PF01026 TatD related DNase SD90_RS01190 PF13331 Domain of unknown function (DUF4093) SD90_RS01195 PF00398 Ribosomal RNA adenine dimethylase SD90_RS01200 PF16745 RsgA N-terminal domain SD90_RS01200 PF03193 RsgA GTPase SD90_RS01205 PF00834 Ribulose-phosphate 3 epimerase family SD90_RS01210 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SD90_RS01210 PF04263 Thiamin pyrophosphokinase, catalytic domain SD90_RS01215 PF02646 RmuC family SD90_RS01220 PF01966 HD domain SD90_RS01225 PF09182 Bacterial purine repressor, N-terminal SD90_RS01225 PF00156 Phosphoribosyl transferase domain SD90_RS01235 PF00164 Ribosomal protein S12/S23 SD90_RS01240 PF00177 Ribosomal protein S7p/S5e SD90_RS01245 PF03764 Elongation factor G, domain IV SD90_RS01245 PF14492 Elongation Factor G, domain II SD90_RS01245 PF00009 Elongation factor Tu GTP binding domain SD90_RS01245 PF03144 Elongation factor Tu domain 2 SD90_RS01245 PF00679 Elongation factor G C-terminus SD90_RS01250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD90_RS01250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SD90_RS01255 PF00005 ABC transporter SD90_RS01260 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS01270 PF02673 Bacitracin resistance protein BacA SD90_RS01275 PF05389 Negative regulator of genetic competence (MecA) SD90_RS01280 PF00953 Glycosyl transferase family 4 SD90_RS01285 PF00005 ABC transporter SD90_RS01290 PF01458 Uncharacterized protein family (UPF0051) SD90_RS01295 PF00266 Aminotransferase class-V SD90_RS01300 PF01592 NifU-like N terminal domain SD90_RS01305 PF01458 Uncharacterized protein family (UPF0051) SD90_RS01310 PF00768 D-alanyl-D-alanine carboxypeptidase SD90_RS01310 PF07943 Penicillin-binding protein 5, C-terminal domain SD90_RS01315 PF07943 Penicillin-binding protein 5, C-terminal domain SD90_RS01315 PF00768 D-alanyl-D-alanine carboxypeptidase SD90_RS01320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SD90_RS01325 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS01330 PF12911 N-terminal TM domain of oligopeptide transport permease C SD90_RS01330 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS01335 PF00005 ABC transporter SD90_RS01335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SD90_RS01340 PF00005 ABC transporter SD90_RS01340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SD90_RS01385 PF13808 DDE_Tnp_1-associated SD90_RS01385 PF01609 Transposase DDE domain SD90_RS01400 PF01926 50S ribosome-binding GTPase SD90_RS01405 PF01985 CRS1 / YhbY (CRM) domain SD90_RS01410 PF01467 Cytidylyltransferase-like SD90_RS01415 PF01966 HD domain SD90_RS01425 PF13649 Methyltransferase domain SD90_RS01430 PF05636 HIGH Nucleotidyl Transferase SD90_RS01435 PF01709 Transcriptional regulator SD90_RS01440 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD90_RS01445 PF03180 NLPA lipoprotein SD90_RS01450 PF00005 ABC transporter SD90_RS01450 PF09383 NIL domain SD90_RS01455 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS01460 PF05525 Branched-chain amino acid transport protein SD90_RS01465 PF00375 Sodium:dicarboxylate symporter family SD90_RS01470 PF02080 TrkA-C domain SD90_RS01470 PF02254 TrkA-N domain SD90_RS01475 PF02386 Cation transport protein SD90_RS01480 PF02527 rRNA small subunit methyltransferase G SD90_RS01485 PF04011 LemA family SD90_RS01490 PF01435 Peptidase family M48 SD90_RS01500 PF00486 Transcriptional regulatory protein, C terminal SD90_RS01500 PF00072 Response regulator receiver domain SD90_RS01505 PF00512 His Kinase A (phospho-acceptor) domain SD90_RS01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS01505 PF18719 ArlS sensor domain SD90_RS01510 PF03477 ATP cone domain SD90_RS01520 PF07319 Primosomal protein DnaI N-terminus SD90_RS01520 PF01695 IstB-like ATP binding protein SD90_RS01525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SD90_RS01525 PF01926 50S ribosome-binding GTPase SD90_RS01530 PF00176 SNF2 family N-terminal domain SD90_RS01530 PF00271 Helicase conserved C-terminal domain SD90_RS01530 PF12419 SNF2 Helicase protein SD90_RS01540 PF08245 Mur ligase middle domain SD90_RS01540 PF02875 Mur ligase family, glutamate ligase domain SD90_RS01540 PF01225 Mur ligase family, catalytic domain SD90_RS01550 PF02618 YceG-like family SD90_RS01555 PF03449 Transcription elongation factor, N-terminal SD90_RS01555 PF01272 Transcription elongation factor, GreA/GreB, C-term SD90_RS01560 PF02096 60Kd inner membrane protein SD90_RS01565 PF00708 Acylphosphatase SD90_RS01570 PF00588 SpoU rRNA Methylase family SD90_RS01570 PF08032 RNA 2'-O ribose methyltransferase substrate binding SD90_RS01580 PF01027 Inhibitor of apoptosis-promoting Bax1 SD90_RS01585 PF03672 Uncharacterised protein family (UPF0154) SD90_RS01590 PF01177 Asp/Glu/Hydantoin racemase SD90_RS01595 PF01725 Ham1 family SD90_RS01615 PF02616 Segregation and condensation protein ScpA SD90_RS01620 PF04079 Segregation and condensation complex subunit ScpB SD90_RS01625 PF01479 S4 domain SD90_RS01625 PF00849 RNA pseudouridylate synthase SD90_RS01630 PF01809 Putative membrane protein insertion efficiency factor SD90_RS01635 PF00588 SpoU rRNA Methylase family SD90_RS01640 PF12822 ECF transporter, substrate-specific component SD90_RS01645 PF01569 PAP2 superfamily SD90_RS01650 PF04055 Radical SAM superfamily SD90_RS01650 PF16199 Radical_SAM C-terminal domain SD90_RS01655 PF06962 Putative rRNA methylase SD90_RS01660 PF03471 Transporter associated domain SD90_RS01660 PF01595 Cyclin M transmembrane N-terminal domain SD90_RS01660 PF00571 CBS domain SD90_RS01665 PF04055 Radical SAM superfamily SD90_RS01670 PF02833 DHHA2 domain SD90_RS01670 PF01368 DHH family SD90_RS01680 PF01032 FecCD transport family SD90_RS01685 PF01032 FecCD transport family SD90_RS01690 PF01497 Periplasmic binding protein SD90_RS01695 PF00005 ABC transporter SD90_RS01700 PF02875 Mur ligase family, glutamate ligase domain SD90_RS01700 PF08245 Mur ligase middle domain SD90_RS01705 PF01943 Polysaccharide biosynthesis protein SD90_RS01705 PF14667 Polysaccharide biosynthesis C-terminal domain SD90_RS01715 PF00574 Clp protease SD90_RS01720 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SD90_RS01725 PF02223 Thymidylate kinase SD90_RS01730 PF09115 DNA polymerase III, delta subunit, C terminal SD90_RS01735 PF06156 Initiation control protein YabA SD90_RS01740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SD90_RS01750 PF03932 CutC family SD90_RS01755 PF03960 ArsC family SD90_RS01760 PF03372 Endonuclease/Exonuclease/phosphatase family SD90_RS01770 PF01070 FMN-dependent dehydrogenase SD90_RS01775 PF06280 Fn3-like domain SD90_RS01775 PF00746 LPXTG cell wall anchor motif SD90_RS01775 PF02225 PA domain SD90_RS01775 PF00082 Subtilase family SD90_RS01785 PF01588 Putative tRNA binding domain SD90_RS01785 PF09334 tRNA synthetases class I (M) SD90_RS01790 PF00268 Ribonucleotide reductase, small chain SD90_RS01795 PF07972 NrdI Flavodoxin like SD90_RS01800 PF02867 Ribonucleotide reductase, barrel domain SD90_RS01800 PF08343 Ribonucleotide reductase N-terminal SD90_RS01800 PF00317 Ribonucleotide reductase, all-alpha domain SD90_RS01805 PF03496 ADP-ribosyltransferase exoenzyme SD90_RS01830 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD90_RS01830 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD90_RS01850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SD90_RS01850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SD90_RS01855 PF07690 Major Facilitator Superfamily SD90_RS01860 PF12804 MobA-like NTP transferase domain SD90_RS01860 PF14602 Hexapeptide repeat of succinyl-transferase SD90_RS01860 PF00132 Bacterial transferase hexapeptide (six repeats) SD90_RS01865 PF00293 NUDIX domain SD90_RS01875 PF01048 Phosphorylase superfamily SD90_RS01890 PF01297 Zinc-uptake complex component A periplasmic SD90_RS01895 PF00005 ABC transporter SD90_RS01900 PF00950 ABC 3 transport family SD90_RS01905 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SD90_RS01910 PF01580 FtsK/SpoIIIE family SD90_RS01910 PF09397 Ftsk gamma domain SD90_RS01910 PF17854 FtsK alpha domain SD90_RS01920 PF03946 Ribosomal protein L11, N-terminal domain SD90_RS01920 PF00298 Ribosomal protein L11, RNA binding domain SD90_RS01925 PF00687 Ribosomal protein L1p/L10e family SD90_RS01930 PF00696 Amino acid kinase family SD90_RS01935 PF01765 Ribosome recycling factor SD90_RS01945 PF01625 Peptide methionine sulfoxide reductase SD90_RS01950 PF06855 YozE SAM-like fold SD90_RS01960 PF06100 MCRA family SD90_RS01965 PF02562 PhoH-like protein SD90_RS01970 PF03167 Uracil DNA glycosylase superfamily SD90_RS01975 PF02130 Uncharacterized protein family UPF0054 SD90_RS01980 PF01219 Prokaryotic diacylglycerol kinase SD90_RS01985 PF01926 50S ribosome-binding GTPase SD90_RS01985 PF07650 KH domain SD90_RS01990 PF13344 Haloacid dehalogenase-like hydrolase SD90_RS01990 PF00293 NUDIX domain SD90_RS01995 PF00664 ABC transporter transmembrane region SD90_RS01995 PF00005 ABC transporter SD90_RS01995 PF03412 Peptidase C39 family SD90_RS02000 PF00664 ABC transporter transmembrane region SD90_RS02000 PF03412 Peptidase C39 family SD90_RS02000 PF00005 ABC transporter SD90_RS02035 PF00665 Integrase core domain SD90_RS02035 PF13276 HTH-like domain SD90_RS02035 PF13333 Integrase core domain SD90_RS02040 PF13276 HTH-like domain SD90_RS02040 PF13333 Integrase core domain SD90_RS02040 PF00665 Integrase core domain SD90_RS02045 PF13276 HTH-like domain SD90_RS02045 PF00665 Integrase core domain SD90_RS02045 PF13333 Integrase core domain SD90_RS02055 PF00072 Response regulator receiver domain SD90_RS02055 PF04397 LytTr DNA-binding domain SD90_RS02070 PF00664 ABC transporter transmembrane region SD90_RS02070 PF03412 Peptidase C39 family SD90_RS02070 PF00005 ABC transporter SD90_RS02080 PF00872 Transposase, Mutator family SD90_RS02095 PF00872 Transposase, Mutator family SD90_RS02150 PF06827 Zinc finger found in FPG and IleRS SD90_RS02150 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SD90_RS02150 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SD90_RS02155 PF01121 Dephospho-CoA kinase SD90_RS02160 PF05872 Bacterial protein of unknown function (DUF853) SD90_RS02165 PF07690 Major Facilitator Superfamily SD90_RS02165 PF00083 Sugar (and other) transporter SD90_RS02175 PF00575 S1 RNA binding domain SD90_RS02175 PF00773 RNB domain SD90_RS02175 PF08206 Ribonuclease B OB domain SD90_RS02175 PF17876 Cold shock domain SD90_RS02180 PF01668 SmpB protein SD90_RS02190 PF01470 Pyroglutamyl peptidase SD90_RS02205 PF00535 Glycosyl transferase family 2 SD90_RS02210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD90_RS02215 PF00881 Nitroreductase family SD90_RS02220 PF01321 Creatinase/Prolidase N-terminal domain SD90_RS02220 PF00557 Metallopeptidase family M24 SD90_RS02225 PF00356 Bacterial regulatory proteins, lacI family SD90_RS02230 PF00534 Glycosyl transferases group 1 SD90_RS02230 PF13439 Glycosyltransferase Family 4 SD90_RS02235 PF13439 Glycosyltransferase Family 4 SD90_RS02235 PF00534 Glycosyl transferases group 1 SD90_RS02240 PF02824 TGS domain SD90_RS02240 PF03129 Anticodon binding domain SD90_RS02240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD90_RS02240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD90_RS02245 PF00005 ABC transporter SD90_RS02265 PF00108 Thiolase, N-terminal domain SD90_RS02265 PF02803 Thiolase, C-terminal domain SD90_RS02280 PF00072 Response regulator receiver domain SD90_RS02280 PF00486 Transcriptional regulatory protein, C terminal SD90_RS02285 PF13426 PAS domain SD90_RS02285 PF00672 HAMP domain SD90_RS02285 PF00512 His Kinase A (phospho-acceptor) domain SD90_RS02285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS02290 PF00753 Metallo-beta-lactamase superfamily SD90_RS02295 PF14622 Ribonuclease-III-like SD90_RS02295 PF00035 Double-stranded RNA binding motif SD90_RS02300 PF02463 RecF/RecN/SMC N terminal domain SD90_RS02300 PF06470 SMC proteins Flexible Hinge Domain SD90_RS02310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SD90_RS02310 PF08501 Shikimate dehydrogenase substrate binding domain SD90_RS02330 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) SD90_RS02350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SD90_RS02350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SD90_RS02350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SD90_RS02405 PF01610 Transposase SD90_RS02405 PF13683 Integrase core domain SD90_RS02420 PF02881 SRP54-type protein, helical bundle domain SD90_RS02420 PF00448 SRP54-type protein, GTPase domain SD90_RS02425 PF07690 Major Facilitator Superfamily SD90_RS02430 PF03123 CAT RNA binding domain SD90_RS02430 PF00874 PRD domain SD90_RS02435 PF00367 phosphotransferase system, EIIB SD90_RS02435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SD90_RS02435 PF02378 Phosphotransferase system, EIIC SD90_RS02440 PF00232 Glycosyl hydrolase family 1 SD90_RS02445 PF09323 Domain of unknown function (DUF1980) SD90_RS02450 PF03773 Predicted permease SD90_RS02460 PF09371 Tex-like protein N-terminal domain SD90_RS02460 PF16921 Tex protein YqgF-like domain SD90_RS02460 PF17674 HHH domain SD90_RS02460 PF00575 S1 RNA binding domain SD90_RS02465 PF10263 SprT-like family SD90_RS02475 PF07475 HPr Serine kinase C-terminal domain SD90_RS02475 PF02603 HPr Serine kinase N terminus SD90_RS02480 PF01790 Prolipoprotein diacylglyceryl transferase SD90_RS02490 PF12732 YtxH-like protein SD90_RS02505 PF16325 Peptidase family U32 C-terminal domain SD90_RS02505 PF01136 Peptidase family U32 SD90_RS02510 PF02229 Transcriptional Coactivator p15 (PC4) SD90_RS02515 PF01336 OB-fold nucleic acid binding domain SD90_RS02515 PF00152 tRNA synthetases class II (D, K and N) SD90_RS02535 PF09515 Thiamine transporter protein (Thia_YuaJ) SD90_RS02555 PF00255 Glutathione peroxidase SD90_RS02560 PF08439 Oligopeptidase F SD90_RS02560 PF01432 Peptidase family M3 SD90_RS02565 PF00311 Phosphoenolpyruvate carboxylase SD90_RS02570 PF01098 Cell cycle protein SD90_RS02575 PF03143 Elongation factor Tu C-terminal domain SD90_RS02575 PF03144 Elongation factor Tu domain 2 SD90_RS02575 PF00009 Elongation factor Tu GTP binding domain SD90_RS02580 PF00121 Triosephosphate isomerase SD90_RS02605 PF01966 HD domain SD90_RS02615 PF00690 Cation transporter/ATPase, N-terminus SD90_RS02615 PF00689 Cation transporting ATPase, C-terminus SD90_RS02620 PF00356 Bacterial regulatory proteins, lacI family SD90_RS02630 PF03613 PTS system mannose/fructose/sorbose family IID component SD90_RS02635 PF03609 PTS system sorbose-specific iic component SD90_RS02640 PF03830 PTS system sorbose subfamily IIB component SD90_RS02645 PF07470 Glycosyl Hydrolase Family 88 SD90_RS02670 PF01081 KDPG and KHG aldolase SD90_RS02675 PF13419 Haloacid dehalogenase-like hydrolase SD90_RS02685 PF03462 PCRF domain SD90_RS02685 PF00472 RF-1 domain SD90_RS02690 PF00005 ABC transporter SD90_RS02695 PF02687 FtsX-like permease family SD90_RS02695 PF18075 FtsX extracellular domain SD90_RS02700 PF00753 Metallo-beta-lactamase superfamily SD90_RS02710 PF13808 DDE_Tnp_1-associated SD90_RS02710 PF01609 Transposase DDE domain SD90_RS02720 PF00929 Exonuclease SD90_RS02720 PF13307 Helicase C-terminal domain SD90_RS02720 PF04851 Type III restriction enzyme, res subunit SD90_RS02725 PF00155 Aminotransferase class I and II SD90_RS02730 PF01336 OB-fold nucleic acid binding domain SD90_RS02730 PF00152 tRNA synthetases class II (D, K and N) SD90_RS02735 PF03668 P-loop ATPase protein family SD90_RS02740 PF01933 Uncharacterised protein family UPF0052 SD90_RS02745 PF10298 WhiA N-terminal LAGLIDADG-like domain SD90_RS02745 PF14527 WhiA LAGLIDADG-like domain SD90_RS02745 PF02650 WhiA C-terminal HTH domain SD90_RS02750 PF03577 Peptidase family C69 SD90_RS02755 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SD90_RS02755 PF01297 Zinc-uptake complex component A periplasmic SD90_RS02760 PF00392 Bacterial regulatory proteins, gntR family SD90_RS02760 PF07702 UTRA domain SD90_RS02765 PF01380 SIS domain SD90_RS02770 PF01197 Ribosomal protein L31 SD90_RS02775 PF02272 DHHA1 domain SD90_RS02775 PF01368 DHH family SD90_RS02780 PF00258 Flavodoxin SD90_RS02790 PF00654 Voltage gated chloride channel SD90_RS02795 PF01245 Ribosomal protein L19 SD90_RS02810 PF00986 DNA gyrase B subunit, carboxyl terminus SD90_RS02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS02810 PF01751 Toprim domain SD90_RS02810 PF00204 DNA gyrase B SD90_RS02815 PF06160 Septation ring formation regulator, EzrA SD90_RS02825 PF03952 Enolase, N-terminal domain SD90_RS02825 PF00113 Enolase, C-terminal TIM barrel domain SD90_RS02860 PF00005 ABC transporter SD90_RS02880 PF06177 QueT transporter SD90_RS02885 PF00533 BRCA1 C Terminus (BRCT) domain SD90_RS02885 PF12826 Helix-hairpin-helix motif SD90_RS02885 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SD90_RS02885 PF03120 NAD-dependent DNA ligase OB-fold domain SD90_RS02885 PF01653 NAD-dependent DNA ligase adenylation domain SD90_RS02890 PF00781 Diacylglycerol kinase catalytic domain SD90_RS02895 PF00137 ATP synthase subunit C SD90_RS02900 PF00119 ATP synthase A chain SD90_RS02905 PF00430 ATP synthase B/B' CF(0) SD90_RS02910 PF00213 ATP synthase delta (OSCP) subunit SD90_RS02915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD90_RS02915 PF00306 ATP synthase alpha/beta chain, C terminal domain SD90_RS02915 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD90_RS02920 PF00231 ATP synthase SD90_RS02925 PF02874 ATP synthase alpha/beta family, beta-barrel domain SD90_RS02925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SD90_RS02930 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SD90_RS02930 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SD90_RS02940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD90_RS02955 PF01409 tRNA synthetases class II core domain (F) SD90_RS02955 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SD90_RS02960 PF03484 tRNA synthetase B5 domain SD90_RS02960 PF03147 Ferredoxin-fold anticodon binding domain SD90_RS02960 PF03483 B3/4 domain SD90_RS02960 PF01588 Putative tRNA binding domain SD90_RS02960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SD90_RS02975 PF02687 FtsX-like permease family SD90_RS02980 PF00005 ABC transporter SD90_RS02985 PF04228 Putative neutral zinc metallopeptidase SD90_RS02990 PF12705 PD-(D/E)XK nuclease superfamily SD90_RS02995 PF12705 PD-(D/E)XK nuclease superfamily SD90_RS02995 PF00580 UvrD/REP helicase N-terminal domain SD90_RS02995 PF13361 UvrD-like helicase C-terminal domain SD90_RS03000 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD90_RS03005 PF01165 Ribosomal protein S21 SD90_RS03010 PF01741 Large-conductance mechanosensitive channel, MscL SD90_RS03015 PF08275 DNA primase catalytic core, N-terminal domain SD90_RS03015 PF10410 DnaB-helicase binding domain of primase SD90_RS03015 PF01807 CHC2 zinc finger SD90_RS03020 PF00140 Sigma-70 factor, region 1.2 SD90_RS03020 PF03979 Sigma-70 factor, region 1.1 SD90_RS03020 PF04539 Sigma-70 region 3 SD90_RS03020 PF04545 Sigma-70, region 4 SD90_RS03020 PF04542 Sigma-70 region 2 SD90_RS03025 PF01883 Iron-sulfur cluster assembly protein SD90_RS03030 PF04321 RmlD substrate binding domain SD90_RS03040 PF00535 Glycosyl transferase family 2 SD90_RS03040 PF02709 N-terminal domain of galactosyltransferase SD90_RS03050 PF00005 ABC transporter SD90_RS03055 PF00535 Glycosyl transferase family 2 SD90_RS03070 PF00535 Glycosyl transferase family 2 SD90_RS03090 PF07687 Peptidase dimerisation domain SD90_RS03090 PF01546 Peptidase family M20/M25/M40 SD90_RS03105 PF02224 Cytidylate kinase SD90_RS03110 PF00707 Translation initiation factor IF-3, C-terminal domain SD90_RS03110 PF05198 Translation initiation factor IF-3, N-terminal domain SD90_RS03115 PF01632 Ribosomal protein L35 SD90_RS03120 PF00453 Ribosomal protein L20 SD90_RS03125 PF00884 Sulfatase SD90_RS03130 PF10672 S-adenosylmethionine-dependent methyltransferase SD90_RS03130 PF17785 PUA-like domain SD90_RS03135 PF01487 Type I 3-dehydroquinase SD90_RS03140 PF01264 Chorismate synthase SD90_RS03145 PF06133 Control of competence regulator ComK, YlbF/YmcA SD90_RS03150 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD90_RS03150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD90_RS03155 PF02875 Mur ligase family, glutamate ligase domain SD90_RS03155 PF08245 Mur ligase middle domain SD90_RS03165 PF00266 Aminotransferase class-V SD90_RS03170 PF02568 Thiamine biosynthesis protein (ThiI) SD90_RS03170 PF02926 THUMP domain SD90_RS03175 PF09587 Bacterial capsule synthesis protein PGA_cap SD90_RS03180 PF00829 Ribosomal prokaryotic L21 protein SD90_RS03190 PF01016 Ribosomal L27 protein SD90_RS03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD90_RS03195 PF03466 LysR substrate binding domain SD90_RS03200 PF01252 Signal peptidase (SPase) II SD90_RS03205 PF00849 RNA pseudouridylate synthase SD90_RS03205 PF01479 S4 domain SD90_RS03210 PF00156 Phosphoribosyl transferase domain SD90_RS03215 PF00860 Permease family SD90_RS03220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SD90_RS03220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SD90_RS03225 PF00117 Glutamine amidotransferase class-I SD90_RS03225 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SD90_RS03230 PF02142 MGS-like domain SD90_RS03230 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD90_RS03230 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD90_RS03235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SD90_RS03240 PF00005 ABC transporter SD90_RS03245 PF12704 MacB-like periplasmic core domain SD90_RS03245 PF02687 FtsX-like permease family SD90_RS03250 PF03009 Glycerophosphoryl diester phosphodiesterase family SD90_RS03255 PF00886 Ribosomal protein S16 SD90_RS03285 PF05239 PRC-barrel domain SD90_RS03285 PF01782 RimM N-terminal domain SD90_RS03290 PF01746 tRNA (Guanine-1)-methyltransferase SD90_RS03295 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD90_RS03305 PF02558 Ketopantoate reductase PanE/ApbA SD90_RS03305 PF08546 Ketopantoate reductase PanE/ApbA C terminal SD90_RS03310 PF08220 DeoR-like helix-turn-helix domain SD90_RS03310 PF00455 DeoR C terminal sensor domain SD90_RS03315 PF00294 pfkB family carbohydrate kinase SD90_RS03320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD90_RS03320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD90_RS03325 PF01476 LysM domain SD90_RS03325 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD90_RS03330 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD90_RS03330 PF01476 LysM domain SD90_RS03340 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD90_RS03340 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD90_RS03345 PF09028 Mac 1 SD90_RS03350 PF00334 Nucleoside diphosphate kinase SD90_RS03360 PF02645 Uncharacterised protein, DegV family COG1307 SD90_RS03365 PF01743 Poly A polymerase head domain SD90_RS03365 PF13735 tRNA nucleotidyltransferase domain 2 putative SD90_RS03365 PF12627 Probable RNA and SrmB- binding site of polymerase A SD90_RS03370 PF16326 ABC transporter C-terminal domain SD90_RS03370 PF00005 ABC transporter SD90_RS03370 PF12848 ABC transporter SD90_RS03380 PF01327 Polypeptide deformylase SD90_RS03385 PF00149 Calcineurin-like phosphoesterase SD90_RS03385 PF02872 5'-nucleotidase, C-terminal domain SD90_RS03385 PF17936 Bacterial Ig domain SD90_RS03390 PF04607 Region found in RelA / SpoT proteins SD90_RS03395 PF00072 Response regulator receiver domain SD90_RS03395 PF00486 Transcriptional regulatory protein, C terminal SD90_RS03400 PF00512 His Kinase A (phospho-acceptor) domain SD90_RS03400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS03405 PF10509 Galactokinase galactose-binding signature SD90_RS03405 PF00288 GHMP kinases N terminal domain SD90_RS03405 PF08544 GHMP kinases C terminal SD90_RS03415 PF08544 GHMP kinases C terminal SD90_RS03415 PF00288 GHMP kinases N terminal domain SD90_RS03420 PF01070 FMN-dependent dehydrogenase SD90_RS03425 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SD90_RS03430 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SD90_RS03430 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SD90_RS03435 PF00303 Thymidylate synthase SD90_RS03440 PF00186 Dihydrofolate reductase SD90_RS03445 PF10431 C-terminal, D2-small domain, of ClpB protein SD90_RS03445 PF06689 ClpX C4-type zinc finger SD90_RS03445 PF07724 AAA domain (Cdc48 subfamily) SD90_RS03450 PF01926 50S ribosome-binding GTPase SD90_RS03460 PF10431 C-terminal, D2-small domain, of ClpB protein SD90_RS03460 PF07724 AAA domain (Cdc48 subfamily) SD90_RS03460 PF00004 ATPase family associated with various cellular activities (AAA) SD90_RS03460 PF17871 AAA lid domain SD90_RS03465 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SD90_RS03470 PF01676 Metalloenzyme superfamily SD90_RS03475 PF03960 ArsC family SD90_RS03480 PF01048 Phosphorylase superfamily SD90_RS03485 PF01048 Phosphorylase superfamily SD90_RS03495 PF03466 LysR substrate binding domain SD90_RS03495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD90_RS03505 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SD90_RS03510 PF00156 Phosphoribosyl transferase domain SD90_RS03515 PF01425 Amidase SD90_RS03520 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD90_RS03525 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS03530 PF03167 Uracil DNA glycosylase superfamily SD90_RS03535 PF01979 Amidohydrolase family SD90_RS03540 PF02660 Glycerol-3-phosphate acyltransferase SD90_RS03545 PF00204 DNA gyrase B SD90_RS03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS03545 PF00986 DNA gyrase B subunit, carboxyl terminus SD90_RS03545 PF01751 Toprim domain SD90_RS03550 PF03989 DNA gyrase C-terminal domain, beta-propeller SD90_RS03550 PF00521 DNA gyrase/topoisomerase IV, subunit A SD90_RS03555 PF01063 Amino-transferase class IV SD90_RS03575 PF00575 S1 RNA binding domain SD90_RS03590 PF12368 Rhodanase C-terminal SD90_RS03590 PF17773 UPF0176 acylphosphatase like domain SD90_RS03590 PF00581 Rhodanese-like domain SD90_RS03610 PF16360 GTP-binding GTPase Middle Region SD90_RS03610 PF13167 GTP-binding GTPase N-terminal SD90_RS03610 PF01926 50S ribosome-binding GTPase SD90_RS03615 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SD90_RS03615 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SD90_RS03620 PF12706 Beta-lactamase superfamily domain SD90_RS03620 PF00753 Metallo-beta-lactamase superfamily SD90_RS03625 PF00106 short chain dehydrogenase SD90_RS03630 PF17768 RecJ OB domain SD90_RS03630 PF01368 DHH family SD90_RS03630 PF02272 DHHA1 domain SD90_RS03630 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SD90_RS03635 PF00156 Phosphoribosyl transferase domain SD90_RS03645 PF10576 Iron-sulfur binding domain of endonuclease III SD90_RS03645 PF00633 Helix-hairpin-helix motif SD90_RS03645 PF00730 HhH-GPD superfamily base excision DNA repair protein SD90_RS03650 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SD90_RS03655 PF01784 NIF3 (NGG1p interacting factor 3) SD90_RS03660 PF01266 FAD dependent oxidoreductase SD90_RS03665 PF00483 Nucleotidyl transferase SD90_RS03670 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SD90_RS03675 PF16363 GDP-mannose 4,6 dehydratase SD90_RS03680 PF00293 NUDIX domain SD90_RS03685 PF01594 AI-2E family transporter SD90_RS03695 PF05670 NFACT protein RNA binding domain SD90_RS03715 PF00005 ABC transporter SD90_RS03720 PF00753 Metallo-beta-lactamase superfamily SD90_RS03720 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SD90_RS03720 PF17770 Ribonuclease J C-terminal domain SD90_RS03725 PF00756 Putative esterase SD90_RS03735 PF00005 ABC transporter SD90_RS03735 PF16326 ABC transporter C-terminal domain SD90_RS03735 PF12848 ABC transporter SD90_RS03740 PF00676 Dehydrogenase E1 component SD90_RS03745 PF02780 Transketolase, C-terminal domain SD90_RS03745 PF02779 Transketolase, pyrimidine binding domain SD90_RS03745 PF00364 Biotin-requiring enzyme SD90_RS03750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SD90_RS03750 PF00364 Biotin-requiring enzyme SD90_RS03750 PF02817 e3 binding domain SD90_RS03760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD90_RS03760 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD90_RS03765 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SD90_RS03765 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SD90_RS03765 PF02278 Polysaccharide lyase family 8, super-sandwich domain SD90_RS03770 PF03099 Biotin/lipoate A/B protein ligase family SD90_RS03770 PF10437 Bacterial lipoate protein ligase C-terminus SD90_RS03775 PF07685 CobB/CobQ-like glutamine amidotransferase domain SD90_RS03780 PF08245 Mur ligase middle domain SD90_RS03780 PF08353 Domain of unknown function (DUF1727) SD90_RS03785 PF02457 DisA bacterial checkpoint controller nucleotide-binding SD90_RS03795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD90_RS03795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD90_RS03795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD90_RS03795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD90_RS03805 PF06969 HemN C-terminal domain SD90_RS03805 PF04055 Radical SAM superfamily SD90_RS03815 PF13344 Haloacid dehalogenase-like hydrolase SD90_RS03825 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 SD90_RS03825 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 SD90_RS03825 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 SD90_RS03825 PF13395 HNH endonuclease SD90_RS03830 PF01867 CRISPR associated protein Cas1 SD90_RS03835 PF09827 CRISPR associated protein Cas2 SD90_RS03840 PF09711 CRISPR-associated protein (Cas_Csn2) SD90_RS03845 PF00334 Nucleoside diphosphate kinase SD90_RS03850 PF03144 Elongation factor Tu domain 2 SD90_RS03850 PF00679 Elongation factor G C-terminus SD90_RS03850 PF06421 GTP-binding protein LepA C-terminus SD90_RS03850 PF00009 Elongation factor Tu GTP binding domain SD90_RS03850 PF14492 Elongation Factor G, domain II SD90_RS03855 PF00746 LPXTG cell wall anchor motif SD90_RS03855 PF02370 M protein repeat SD90_RS03860 PF01641 SelR domain SD90_RS03865 PF03601 Conserved hypothetical protein 698 SD90_RS03875 PF03830 PTS system sorbose subfamily IIB component SD90_RS03880 PF03609 PTS system sorbose-specific iic component SD90_RS03885 PF03613 PTS system mannose/fructose/sorbose family IID component SD90_RS03890 PF06580 Histidine kinase SD90_RS03890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS03895 PF12833 Helix-turn-helix domain SD90_RS03895 PF00072 Response regulator receiver domain SD90_RS03905 PF00171 Aldehyde dehydrogenase family SD90_RS03910 PF01541 GIY-YIG catalytic domain SD90_RS03910 PF02151 UvrB/uvrC motif SD90_RS03910 PF08459 UvrC Helix-hairpin-helix N-terminal SD90_RS03915 PF00881 Nitroreductase family SD90_RS03920 PF01546 Peptidase family M20/M25/M40 SD90_RS03925 PF10396 GTP-binding protein TrmE N-terminus SD90_RS03925 PF12631 MnmE helical domain SD90_RS03925 PF01926 50S ribosome-binding GTPase SD90_RS03930 PF00466 Ribosomal protein L10 SD90_RS03935 PF00542 Ribosomal protein L7/L12 C-terminal domain SD90_RS03935 PF16320 Ribosomal protein L7/L12 dimerisation domain SD90_RS03940 PF07943 Penicillin-binding protein 5, C-terminal domain SD90_RS03940 PF00768 D-alanyl-D-alanine carboxypeptidase SD90_RS03950 PF08245 Mur ligase middle domain SD90_RS03950 PF02875 Mur ligase family, glutamate ligase domain SD90_RS03955 PF01227 GTP cyclohydrolase I SD90_RS03960 PF00809 Pterin binding enzyme SD90_RS03965 PF02152 Dihydroneopterin aldolase SD90_RS03970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SD90_RS03975 PF01565 FAD binding domain SD90_RS03975 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SD90_RS03980 PF08402 TOBE domain SD90_RS03980 PF00005 ABC transporter SD90_RS03985 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS03990 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS03995 PF13416 Bacterial extracellular solute-binding protein SD90_RS04000 PF00072 Response regulator receiver domain SD90_RS04005 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SD90_RS04005 PF00989 PAS fold SD90_RS04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS04005 PF17203 Single cache domain 3 SD90_RS04010 PF03390 2-hydroxycarboxylate transporter family SD90_RS04015 PF00390 Malic enzyme, N-terminal domain SD90_RS04015 PF03949 Malic enzyme, NAD binding domain SD90_RS04020 PF13823 Alcohol dehydrogenase GroES-associated SD90_RS04020 PF00107 Zinc-binding dehydrogenase SD90_RS04020 PF08240 Alcohol dehydrogenase GroES-like domain SD90_RS04025 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SD90_RS04030 PF00654 Voltage gated chloride channel SD90_RS04040 PF01594 AI-2E family transporter SD90_RS04045 PF04002 RadC-like JAB domain SD90_RS04050 PF07722 Peptidase C26 SD90_RS04055 PF02629 CoA binding domain SD90_RS04055 PF06971 Putative DNA-binding protein N-terminus SD90_RS04065 PF00266 Aminotransferase class-V SD90_RS04070 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SD90_RS04070 PF14572 Phosphoribosyl synthetase-associated domain SD90_RS04080 PF04607 Region found in RelA / SpoT proteins SD90_RS04085 PF01513 ATP-NAD kinase SD90_RS04090 PF00849 RNA pseudouridylate synthase SD90_RS04090 PF01479 S4 domain SD90_RS04095 PF01515 Phosphate acetyl/butaryl transferase SD90_RS04100 PF00106 short chain dehydrogenase SD90_RS04110 PF00005 ABC transporter SD90_RS04110 PF00571 CBS domain SD90_RS04115 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS04120 PF00478 IMP dehydrogenase / GMP reductase domain SD90_RS04125 PF00156 Phosphoribosyl transferase domain SD90_RS04130 PF00860 Permease family SD90_RS04135 PF02424 ApbE family SD90_RS04140 PF01361 Tautomerase enzyme SD90_RS04145 PF00265 Thymidine kinase SD90_RS04150 PF03462 PCRF domain SD90_RS04150 PF00472 RF-1 domain SD90_RS04155 PF05175 Methyltransferase small domain SD90_RS04170 PF00464 Serine hydroxymethyltransferase SD90_RS04185 PF00005 ABC transporter SD90_RS04185 PF00664 ABC transporter transmembrane region SD90_RS04190 PF00005 ABC transporter SD90_RS04190 PF00664 ABC transporter transmembrane region SD90_RS04195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD90_RS04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD90_RS04200 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SD90_RS04200 PF00056 lactate/malate dehydrogenase, NAD binding domain SD90_RS04205 PF03989 DNA gyrase C-terminal domain, beta-propeller SD90_RS04205 PF00521 DNA gyrase/topoisomerase IV, subunit A SD90_RS04210 PF04203 Sortase domain SD90_RS04215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD90_RS04230 PF03006 Haemolysin-III related SD90_RS04240 PF01926 50S ribosome-binding GTPase SD90_RS04245 PF01351 Ribonuclease HII SD90_RS04250 PF02481 DNA recombination-mediator protein A SD90_RS04250 PF18255 DNA processing protein A sterile alpha motif domain SD90_RS04255 PF01131 DNA topoisomerase SD90_RS04255 PF01751 Toprim domain SD90_RS04255 PF01396 Topoisomerase DNA binding C4 zinc finger SD90_RS04260 PF01134 Glucose inhibited division protein A SD90_RS04265 PF00682 HMGL-like SD90_RS04265 PF02436 Conserved carboxylase domain SD90_RS04265 PF00364 Biotin-requiring enzyme SD90_RS04275 PF00364 Biotin-requiring enzyme SD90_RS04280 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SD90_RS04285 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SD90_RS04295 PF03600 Citrate transporter SD90_RS04305 PF00364 Biotin-requiring enzyme SD90_RS04310 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SD90_RS04315 PF06857 Malonate decarboxylase delta subunit (MdcD) SD90_RS04320 PF03328 HpcH/HpaI aldolase/citrate lyase family SD90_RS04325 PF04223 Citrate lyase, alpha subunit (CitF) SD90_RS04330 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SD90_RS04335 PF02436 Conserved carboxylase domain SD90_RS04335 PF00682 HMGL-like SD90_RS04335 PF00364 Biotin-requiring enzyme SD90_RS04340 PF08218 Citrate lyase ligase C-terminal domain SD90_RS04350 PF13495 Phage integrase, N-terminal SAM-like domain SD90_RS04350 PF00589 Phage integrase family SD90_RS04360 PF02881 SRP54-type protein, helical bundle domain SD90_RS04360 PF00448 SRP54-type protein, GTPase domain SD90_RS04360 PF02978 Signal peptide binding domain SD90_RS04365 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SD90_RS04370 PF07702 UTRA domain SD90_RS04370 PF00392 Bacterial regulatory proteins, gntR family SD90_RS04380 PF02540 NAD synthase SD90_RS04380 PF00958 GMP synthase C terminal domain SD90_RS04380 PF00117 Glutamine amidotransferase class-I SD90_RS04390 PF12848 ABC transporter SD90_RS04390 PF00005 ABC transporter SD90_RS04400 PF08543 Phosphomethylpyrimidine kinase SD90_RS04400 PF02581 Thiamine monophosphate synthase SD90_RS04405 PF00155 Aminotransferase class I and II SD90_RS04405 PF00392 Bacterial regulatory proteins, gntR family SD90_RS04410 PF03477 ATP cone domain SD90_RS04410 PF13597 Anaerobic ribonucleoside-triphosphate reductase SD90_RS04415 PF13091 PLD-like domain SD90_RS04420 PF01268 Formate--tetrahydrofolate ligase SD90_RS04425 PF10437 Bacterial lipoate protein ligase C-terminus SD90_RS04425 PF03099 Biotin/lipoate A/B protein ligase family SD90_RS04435 PF01661 Macro domain SD90_RS04440 PF01597 Glycine cleavage H-protein SD90_RS04445 PF00296 Luciferase-like monooxygenase SD90_RS04450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SD90_RS04455 PF03099 Biotin/lipoate A/B protein ligase family SD90_RS04460 PF04127 DNA / pantothenate metabolism flavoprotein SD90_RS04460 PF02441 Flavoprotein SD90_RS04465 PF02441 Flavoprotein SD90_RS04470 PF12822 ECF transporter, substrate-specific component SD90_RS04475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD90_RS04475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD90_RS04475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD90_RS04475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD90_RS04480 PF02653 Branched-chain amino acid transport system / permease component SD90_RS04485 PF02653 Branched-chain amino acid transport system / permease component SD90_RS04490 PF00005 ABC transporter SD90_RS04495 PF02608 ABC transporter substrate-binding protein PnrA-like SD90_RS04500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD90_RS04505 PF05175 Methyltransferase small domain SD90_RS04510 PF00485 Phosphoribulokinase / Uridine kinase family SD90_RS04515 PF01649 Ribosomal protein S20 SD90_RS04520 PF00512 His Kinase A (phospho-acceptor) domain SD90_RS04520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS04525 PF00486 Transcriptional regulatory protein, C terminal SD90_RS04525 PF00072 Response regulator receiver domain SD90_RS04530 PF11838 ERAP1-like C-terminal domain SD90_RS04530 PF01433 Peptidase family M1 domain SD90_RS04535 PF01895 PhoU domain SD90_RS04540 PF00005 ABC transporter SD90_RS04545 PF00005 ABC transporter SD90_RS04550 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS04555 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS04560 PF12849 PBP superfamily domain SD90_RS04565 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SD90_RS04565 PF17126 RsmF rRNA methyltransferase first C-terminal domain SD90_RS04565 PF01189 16S rRNA methyltransferase RsmB/F SD90_RS04570 PF00459 Inositol monophosphatase family SD90_RS04575 PF05256 Uncharacterised protein family (UPF0223) SD90_RS04580 PF03960 ArsC family SD90_RS04585 PF01687 Riboflavin kinase SD90_RS04585 PF06574 FAD synthetase SD90_RS04590 PF16198 tRNA pseudouridylate synthase B C-terminal domain SD90_RS04590 PF01509 TruB family pseudouridylate synthase (N terminal domain) SD90_RS04615 PF02687 FtsX-like permease family SD90_RS04615 PF12704 MacB-like periplasmic core domain SD90_RS04615 PF00005 ABC transporter SD90_RS04630 PF03780 Asp23 family, cell envelope-related function SD90_RS04635 PF05532 CsbD-like SD90_RS04640 PF03780 Asp23 family, cell envelope-related function SD90_RS04660 PF00580 UvrD/REP helicase N-terminal domain SD90_RS04660 PF13361 UvrD-like helicase C-terminal domain SD90_RS04665 PF01235 Sodium:alanine symporter family SD90_RS04670 PF01545 Cation efflux family SD90_RS04670 PF16916 Dimerisation domain of Zinc Transporter SD90_RS04675 PF07373 CAMP factor (Cfa) SD90_RS04680 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD90_RS04685 PF00005 ABC transporter SD90_RS04690 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS04695 PF08274 PhnA Zinc-Ribbon SD90_RS04695 PF03831 PhnA domain SD90_RS04700 PF01380 SIS domain SD90_RS04705 PF10502 Signal peptidase, peptidase S26 SD90_RS04710 PF00224 Pyruvate kinase, barrel domain SD90_RS04710 PF02887 Pyruvate kinase, alpha/beta domain SD90_RS04715 PF00365 Phosphofructokinase SD90_RS04720 PF02811 PHP domain SD90_RS04720 PF01336 OB-fold nucleic acid binding domain SD90_RS04720 PF14579 Helix-hairpin-helix motif SD90_RS04720 PF07733 Bacterial DNA polymerase III alpha NTPase domain SD90_RS04720 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SD90_RS04725 PF00392 Bacterial regulatory proteins, gntR family SD90_RS04730 PF00005 ABC transporter SD90_RS04760 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD90_RS04765 PF05257 CHAP domain SD90_RS04765 PF08460 Bacterial SH3 domain SD90_RS04765 PF01520 N-acetylmuramoyl-L-alanine amidase SD90_RS04775 PF13457 GW (Gly-Tryp) dipeptide domain SD90_RS04775 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD90_RS04780 PF05105 Bacteriophage holin family SD90_RS04990 PF00270 DEAD/DEAH box helicase SD90_RS04990 PF00271 Helicase conserved C-terminal domain SD90_RS05090 PF00343 Carbohydrate phosphorylase SD90_RS05095 PF02446 4-alpha-glucanotransferase SD90_RS05100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SD90_RS05100 PF00356 Bacterial regulatory proteins, lacI family SD90_RS05105 PF13416 Bacterial extracellular solute-binding protein SD90_RS05110 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS05115 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS05120 PF13936 Helix-turn-helix domain SD90_RS05130 PF07859 alpha/beta hydrolase fold SD90_RS05130 PF00934 PE family SD90_RS05135 PF04914 DltD protein SD90_RS05140 PF00550 Phosphopantetheine attachment site SD90_RS05145 PF03062 MBOAT, membrane-bound O-acyltransferase family SD90_RS05150 PF00501 AMP-binding enzyme SD90_RS05150 PF13193 AMP-binding enzyme C-terminal domain SD90_RS05160 PF17757 UvrB interaction domain SD90_RS05160 PF12344 Ultra-violet resistance protein B SD90_RS05160 PF04851 Type III restriction enzyme, res subunit SD90_RS05160 PF00271 Helicase conserved C-terminal domain SD90_RS05160 PF02151 UvrB/uvrC motif SD90_RS05165 PF00497 Bacterial extracellular solute-binding proteins, family 3 SD90_RS05170 PF00005 ABC transporter SD90_RS05175 PF02378 Phosphotransferase system, EIIC SD90_RS05185 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SD90_RS05190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD90_RS05195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD90_RS05195 PF00874 PRD domain SD90_RS05195 PF05043 Mga helix-turn-helix domain SD90_RS05195 PF08279 HTH domain SD90_RS05205 PF00232 Glycosyl hydrolase family 1 SD90_RS05220 PF09269 Domain of unknown function (DUF1967) SD90_RS05220 PF01018 GTP1/OBG SD90_RS05220 PF01926 50S ribosome-binding GTPase SD90_RS05230 PF00665 Integrase core domain SD90_RS05230 PF13333 Integrase core domain SD90_RS05230 PF13276 HTH-like domain SD90_RS05235 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SD90_RS05235 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SD90_RS05250 PF13333 Integrase core domain SD90_RS05250 PF00665 Integrase core domain SD90_RS05250 PF13276 HTH-like domain SD90_RS05255 PF13333 Integrase core domain SD90_RS05255 PF00665 Integrase core domain SD90_RS05255 PF13276 HTH-like domain SD90_RS05260 PF01479 S4 domain SD90_RS05260 PF00849 RNA pseudouridylate synthase SD90_RS05270 PF07690 Major Facilitator Superfamily SD90_RS05275 PF08903 Domain of unknown function (DUF1846) SD90_RS05290 PF05958 tRNA (Uracil-5-)-methyltransferase SD90_RS05290 PF01938 TRAM domain SD90_RS05295 PF03816 Cell envelope-related transcriptional attenuator domain SD90_RS05300 PF01202 Shikimate kinase SD90_RS05305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD90_RS05315 PF00557 Metallopeptidase family M24 SD90_RS05320 PF00392 Bacterial regulatory proteins, gntR family SD90_RS05320 PF03061 Thioesterase superfamily SD90_RS05320 PF00571 CBS domain SD90_RS05320 PF07085 DRTGG domain SD90_RS05330 PF00746 LPXTG cell wall anchor motif SD90_RS05330 PF17573 GA-like domain SD90_RS05330 PF01378 B domain SD90_RS05330 PF01378 B domain SD90_RS05330 PF00746 LPXTG cell wall anchor motif SD90_RS05330 PF17573 GA-like domain SD90_RS05335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SD90_RS05340 PF02773 S-adenosylmethionine synthetase, C-terminal domain SD90_RS05340 PF00438 S-adenosylmethionine synthetase, N-terminal domain SD90_RS05340 PF02772 S-adenosylmethionine synthetase, central domain SD90_RS05350 PF03099 Biotin/lipoate A/B protein ligase family SD90_RS05350 PF02237 Biotin protein ligase C terminal domain SD90_RS05350 PF08279 HTH domain SD90_RS05355 PF12169 DNA polymerase III subunits gamma and tau domain III SD90_RS05360 PF13185 GAF domain SD90_RS05375 PF00485 Phosphoribulokinase / Uridine kinase family SD90_RS05380 PF00270 DEAD/DEAH box helicase SD90_RS05380 PF00271 Helicase conserved C-terminal domain SD90_RS05385 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SD90_RS05385 PF01522 Polysaccharide deacetylase SD90_RS05390 PF00171 Aldehyde dehydrogenase family SD90_RS05395 PF05524 PEP-utilising enzyme, N-terminal SD90_RS05395 PF00391 PEP-utilising enzyme, mobile domain SD90_RS05395 PF02896 PEP-utilising enzyme, TIM barrel domain SD90_RS05400 PF00381 PTS HPr component phosphorylation site SD90_RS05405 PF00462 Glutaredoxin SD90_RS05410 PF08343 Ribonucleotide reductase N-terminal SD90_RS05410 PF02867 Ribonucleotide reductase, barrel domain SD90_RS05410 PF00317 Ribonucleotide reductase, all-alpha domain SD90_RS05415 PF00268 Ribonucleotide reductase, small chain SD90_RS05430 PF13276 HTH-like domain SD90_RS05430 PF00665 Integrase core domain SD90_RS05430 PF13333 Integrase core domain SD90_RS05435 PF13333 Integrase core domain SD90_RS05435 PF00665 Integrase core domain SD90_RS05435 PF13276 HTH-like domain SD90_RS05440 PF13276 HTH-like domain SD90_RS05440 PF00665 Integrase core domain SD90_RS05440 PF13333 Integrase core domain SD90_RS05455 PF01381 Helix-turn-helix SD90_RS05460 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SD90_RS05460 PF01411 tRNA synthetases class II (A) SD90_RS05460 PF02272 DHHA1 domain SD90_RS05465 PF13145 PPIC-type PPIASE domain SD90_RS05470 PF01596 O-methyltransferase SD90_RS05475 PF07690 Major Facilitator Superfamily SD90_RS05480 PF01432 Peptidase family M3 SD90_RS05480 PF08439 Oligopeptidase F SD90_RS05490 PF00849 RNA pseudouridylate synthase SD90_RS05490 PF01479 S4 domain SD90_RS05495 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SD90_RS05500 PF02547 Queuosine biosynthesis protein SD90_RS05525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SD90_RS05525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SD90_RS05535 PF00753 Metallo-beta-lactamase superfamily SD90_RS05535 PF13567 Domain of unknown function (DUF4131) SD90_RS05535 PF03772 Competence protein SD90_RS05540 PF10531 SLBB domain SD90_RS05545 PF01553 Acyltransferase SD90_RS05550 PF17827 PrmC N-terminal domain SD90_RS05550 PF05175 Methyltransferase small domain SD90_RS05555 PF01541 GIY-YIG catalytic domain SD90_RS05560 PF02705 K+ potassium transporter SD90_RS05565 PF00271 Helicase conserved C-terminal domain SD90_RS05565 PF00270 DEAD/DEAH box helicase SD90_RS05570 PF00009 Elongation factor Tu GTP binding domain SD90_RS05570 PF16658 Class II release factor RF3, C-terminal domain SD90_RS05570 PF03144 Elongation factor Tu domain 2 SD90_RS05580 PF02875 Mur ligase family, glutamate ligase domain SD90_RS05580 PF01225 Mur ligase family, catalytic domain SD90_RS05580 PF08245 Mur ligase middle domain SD90_RS05585 PF01820 D-ala D-ala ligase N-terminus SD90_RS05585 PF07478 D-ala D-ala ligase C-terminus SD90_RS05590 PF02132 RecR protein SD90_RS05590 PF13662 Toprim domain SD90_RS05595 PF01226 Formate/nitrite transporter SD90_RS05605 PF08279 HTH domain SD90_RS05605 PF02829 3H domain SD90_RS05610 PF00300 Histidine phosphatase superfamily (branch 1) SD90_RS05615 PF01180 Dihydroorotate dehydrogenase SD90_RS05625 PF00216 Bacterial DNA-binding protein SD90_RS05635 PF13472 GDSL-like Lipase/Acylhydrolase family SD90_RS05640 PF02645 Uncharacterised protein, DegV family COG1307 SD90_RS05650 PF13476 AAA domain SD90_RS05655 PF02863 Arginine repressor, C-terminal domain SD90_RS05655 PF01316 Arginine repressor, DNA binding domain SD90_RS05660 PF01728 FtsJ-like methyltransferase SD90_RS05660 PF01479 S4 domain SD90_RS05665 PF00348 Polyprenyl synthetase SD90_RS05670 PF02609 Exonuclease VII small subunit SD90_RS05675 PF02601 Exonuclease VII, large subunit SD90_RS05675 PF13742 OB-fold nucleic acid binding domain SD90_RS05680 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SD90_RS05680 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SD90_RS05685 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SD90_RS05685 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SD90_RS05685 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SD90_RS05685 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SD90_RS05690 PF03441 FAD binding domain of DNA photolyase SD90_RS05690 PF00875 DNA photolyase SD90_RS05695 PF00005 ABC transporter SD90_RS05700 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS05705 PF08796 Protein of unknown function (DUF1797) SD90_RS05710 PF10431 C-terminal, D2-small domain, of ClpB protein SD90_RS05710 PF17871 AAA lid domain SD90_RS05710 PF07724 AAA domain (Cdc48 subfamily) SD90_RS05710 PF00004 ATPase family associated with various cellular activities (AAA) SD90_RS05715 PF00293 NUDIX domain SD90_RS05725 PF08264 Anticodon-binding domain of tRNA SD90_RS05725 PF00133 tRNA synthetases class I (I, L, M and V) SD90_RS05730 PF05103 DivIVA protein SD90_RS05735 PF01479 S4 domain SD90_RS05735 PF17774 Putative RNA-binding domain in YlmH SD90_RS05745 PF04472 Cell division protein SepF SD90_RS05750 PF01168 Alanine racemase, N-terminal domain SD90_RS05755 PF12327 FtsZ family, C-terminal domain SD90_RS05755 PF00091 Tubulin/FtsZ family, GTPase domain SD90_RS05760 PF11983 Membrane-attachment and polymerisation-promoting switch SD90_RS05760 PF02491 SHS2 domain inserted in FTSA SD90_RS05765 PF08478 POTRA domain, FtsQ-type SD90_RS05770 PF04101 Glycosyltransferase family 28 C-terminal domain SD90_RS05770 PF03033 Glycosyltransferase family 28 N-terminal domain SD90_RS05775 PF08245 Mur ligase middle domain SD90_RS05775 PF02875 Mur ligase family, glutamate ligase domain SD90_RS05785 PF00009 Elongation factor Tu GTP binding domain SD90_RS05785 PF14492 Elongation Factor G, domain II SD90_RS05785 PF00679 Elongation factor G C-terminus SD90_RS05785 PF03144 Elongation factor Tu domain 2 SD90_RS05790 PF00581 Rhodanese-like domain SD90_RS05795 PF00480 ROK family SD90_RS05805 PF00210 Ferritin-like domain SD90_RS05815 PF04055 Radical SAM superfamily SD90_RS05820 PF06265 Protein of unknown function (DUF1027) SD90_RS05825 PF00356 Bacterial regulatory proteins, lacI family SD90_RS05830 PF13180 PDZ domain SD90_RS05830 PF05362 Lon protease (S16) C-terminal proteolytic domain SD90_RS05835 PF01467 Cytidylyltransferase-like SD90_RS05845 PF03590 Aspartate-ammonia ligase SD90_RS05850 PF00696 Amino acid kinase family SD90_RS05855 PF01546 Peptidase family M20/M25/M40 SD90_RS05860 PF03606 C4-dicarboxylate anaerobic carrier SD90_RS05865 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SD90_RS05865 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SD90_RS05870 PF13673 Acetyltransferase (GNAT) domain SD90_RS05885 PF01316 Arginine repressor, DNA binding domain SD90_RS05885 PF02863 Arginine repressor, C-terminal domain SD90_RS05900 PF06580 Histidine kinase SD90_RS05900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS05900 PF00672 HAMP domain SD90_RS05900 PF02743 Cache domain SD90_RS05905 PF00072 Response regulator receiver domain SD90_RS05905 PF12833 Helix-turn-helix domain SD90_RS05910 PF01625 Peptide methionine sulfoxide reductase SD90_RS05910 PF01641 SelR domain SD90_RS05915 PF08534 Redoxin SD90_RS05920 PF02683 Cytochrome C biogenesis protein transmembrane region SD90_RS05930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SD90_RS05930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SD90_RS05940 PF08264 Anticodon-binding domain of tRNA SD90_RS05940 PF00133 tRNA synthetases class I (I, L, M and V) SD90_RS05940 PF10458 Valyl tRNA synthetase tRNA binding arm SD90_RS05970 PF00793 DAHP synthetase I family SD90_RS05970 PF01817 Chorismate mutase type II SD90_RS05975 PF01761 3-dehydroquinate synthase SD90_RS05990 PF13649 Methyltransferase domain SD90_RS05995 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SD90_RS05995 PF08501 Shikimate dehydrogenase substrate binding domain SD90_RS06000 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SD90_RS06000 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SD90_RS06000 PF02837 Glycosyl hydrolases family 2, sugar binding domain SD90_RS06000 PF16355 Domain of unknown function (DUF4982) SD90_RS06000 PF00703 Glycosyl hydrolases family 2 SD90_RS06005 PF12833 Helix-turn-helix domain SD90_RS06005 PF00072 Response regulator receiver domain SD90_RS06010 PF00672 HAMP domain SD90_RS06010 PF06580 Histidine kinase SD90_RS06010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS06010 PF02743 Cache domain SD90_RS06020 PF12010 Domain of unknown function (DUF3502) SD90_RS06025 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS06030 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS06035 PF00480 ROK family SD90_RS06040 PF00232 Glycosyl hydrolase family 1 SD90_RS06045 PF02838 Glycosyl hydrolase family 20, domain 2 SD90_RS06045 PF07555 beta-N-acetylglucosaminidase SD90_RS06050 PF00392 Bacterial regulatory proteins, gntR family SD90_RS06060 PF09261 Alpha mannosidase middle domain SD90_RS06060 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SD90_RS06060 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SD90_RS06060 PF07748 Glycosyl hydrolases family 38 C-terminal domain SD90_RS06060 PF01074 Glycosyl hydrolases family 38 N-terminal domain SD90_RS06070 PF05958 tRNA (Uracil-5-)-methyltransferase SD90_RS06070 PF01938 TRAM domain SD90_RS06075 PF02631 RecX family SD90_RS06080 PF04167 Protein of unknown function (DUF402) SD90_RS06140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SD90_RS06140 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SD90_RS06150 PF00271 Helicase conserved C-terminal domain SD90_RS06150 PF04851 Type III restriction enzyme, res subunit SD90_RS06155 PF09186 Domain of unknown function (DUF1949) SD90_RS06155 PF01205 Uncharacterized protein family UPF0029 SD90_RS06160 PF00291 Pyridoxal-phosphate dependent enzyme SD90_RS06165 PF00575 S1 RNA binding domain SD90_RS06170 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SD90_RS06175 PF00196 Bacterial regulatory proteins, luxR family SD90_RS06175 PF00072 Response regulator receiver domain SD90_RS06180 PF00672 HAMP domain SD90_RS06180 PF07730 Histidine kinase SD90_RS06180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS06190 PF03793 PASTA domain SD90_RS06190 PF00069 Protein kinase domain SD90_RS06200 PF01189 16S rRNA methyltransferase RsmB/F SD90_RS06200 PF01029 NusB family SD90_RS06205 PF02911 Formyl transferase, C-terminal domain SD90_RS06205 PF00551 Formyl transferase SD90_RS06210 PF18074 Primosomal protein N C-terminal domain SD90_RS06210 PF00271 Helicase conserved C-terminal domain SD90_RS06210 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SD90_RS06210 PF04851 Type III restriction enzyme, res subunit SD90_RS06210 PF17764 3′ DNA-binding domain (3′BD) SD90_RS06215 PF01192 RNA polymerase Rpb6 SD90_RS06220 PF00625 Guanylate kinase SD90_RS06225 PF01966 HD domain SD90_RS06225 PF12072 Domain of unknown function (DUF3552) SD90_RS06225 PF00013 KH domain SD90_RS06230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SD90_RS06230 PF03466 LysR substrate binding domain SD90_RS06235 PF00108 Thiolase, N-terminal domain SD90_RS06235 PF02803 Thiolase, C-terminal domain SD90_RS06240 PF01144 Coenzyme A transferase SD90_RS06245 PF01144 Coenzyme A transferase SD90_RS06260 PF02664 S-Ribosylhomocysteinase (LuxS) SD90_RS06265 PF18708 MapZ extracellular C-terminal domain 2 SD90_RS06265 PF18041 MapZ extracellular domain 1 SD90_RS06270 PF01170 Putative RNA methylase family UPF0020 SD90_RS06270 PF02926 THUMP domain SD90_RS06280 PF05103 DivIVA protein SD90_RS06285 PF06908 YspA SLOG family SD90_RS06290 PF03838 Recombination protein U SD90_RS06295 PF00912 Transglycosylase SD90_RS06295 PF00905 Penicillin binding protein transpeptidase domain SD90_RS06300 PF03051 Peptidase C1-like family SD90_RS06305 PF02540 NAD synthase SD90_RS06310 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SD90_RS06310 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SD90_RS06310 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SD90_RS06315 PF00324 Amino acid permease SD90_RS06320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD90_RS06330 PF00005 ABC transporter SD90_RS06335 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS06340 PF00271 Helicase conserved C-terminal domain SD90_RS06340 PF00270 DEAD/DEAH box helicase SD90_RS06345 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SD90_RS06345 PF00953 Glycosyl transferase family 4 SD90_RS06350 PF03717 Penicillin-binding Protein dimerisation domain SD90_RS06350 PF00905 Penicillin binding protein transpeptidase domain SD90_RS06350 PF03793 PASTA domain SD90_RS06360 PF01795 MraW methylase family SD90_RS06370 PF00171 Aldehyde dehydrogenase family SD90_RS06375 PF00696 Amino acid kinase family SD90_RS06385 PF00005 ABC transporter SD90_RS06395 PF02780 Transketolase, C-terminal domain SD90_RS06395 PF02779 Transketolase, pyrimidine binding domain SD90_RS06395 PF00456 Transketolase, thiamine diphosphate binding domain SD90_RS06400 PF00923 Transaldolase/Fructose-6-phosphate aldolase SD90_RS06410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SD90_RS06410 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD90_RS06415 PF00230 Major intrinsic protein SD90_RS06420 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SD90_RS06420 PF01266 FAD dependent oxidoreductase SD90_RS06425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SD90_RS06425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SD90_RS06430 PF03413 Peptidase propeptide and YPEB domain SD90_RS06435 PF05979 Bacterial protein of unknown function (DUF896) SD90_RS06440 PF02092 Glycyl-tRNA synthetase beta subunit SD90_RS06445 PF02091 Glycyl-tRNA synthetase alpha subunit SD90_RS06450 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SD90_RS06455 PF00248 Aldo/keto reductase family SD90_RS06460 PF01979 Amidohydrolase family SD90_RS06465 PF02690 Na+/Pi-cotransporter SD90_RS06475 PF02645 Uncharacterised protein, DegV family COG1307 SD90_RS06480 PF00440 Bacterial regulatory proteins, tetR family SD90_RS06490 PF03458 UPF0126 domain SD90_RS06495 PF01791 DeoC/LacD family aldolase SD90_RS06500 PF00294 pfkB family carbohydrate kinase SD90_RS06505 PF02502 Ribose/Galactose Isomerase SD90_RS06510 PF02502 Ribose/Galactose Isomerase SD90_RS06530 PF08220 DeoR-like helix-turn-helix domain SD90_RS06530 PF00455 DeoR C terminal sensor domain SD90_RS06540 PF00403 Heavy-metal-associated domain SD90_RS06545 PF03965 Penicillinase repressor SD90_RS06550 PF07859 alpha/beta hydrolase fold SD90_RS06555 PF02033 Ribosome-binding factor A SD90_RS06560 PF11987 Translation-initiation factor 2 SD90_RS06560 PF00009 Elongation factor Tu GTP binding domain SD90_RS06560 PF04760 Translation initiation factor IF-2, N-terminal region SD90_RS06565 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SD90_RS06570 PF04296 Protein of unknown function (DUF448) SD90_RS06575 PF13184 NusA-like KH domain SD90_RS06575 PF08529 NusA N-terminal domain SD90_RS06575 PF00575 S1 RNA binding domain SD90_RS06580 PF02576 RimP N-terminal domain SD90_RS06580 PF17384 RimP C-terminal SH3 domain SD90_RS06595 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD90_RS06595 PF13457 GW (Gly-Tryp) dipeptide domain SD90_RS06710 PF04466 Phage terminase large subunit SD90_RS06710 PF17288 Terminase RNAseH like domain SD90_RS06730 PF01555 DNA methylase SD90_RS06825 PF02899 Phage integrase, N-terminal SAM-like domain SD90_RS06825 PF00589 Phage integrase family SD90_RS06835 PF02390 Putative methyltransferase SD90_RS06845 PF05975 Bacterial ABC transporter protein EcsB SD90_RS06850 PF00005 ABC transporter SD90_RS06855 PF01230 HIT domain SD90_RS06865 PF03816 Cell envelope-related transcriptional attenuator domain SD90_RS06875 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SD90_RS06880 PF00860 Permease family SD90_RS06890 PF03610 PTS system fructose IIA component SD90_RS06890 PF03830 PTS system sorbose subfamily IIB component SD90_RS06895 PF03609 PTS system sorbose-specific iic component SD90_RS06900 PF03613 PTS system mannose/fructose/sorbose family IID component SD90_RS06910 PF13808 DDE_Tnp_1-associated SD90_RS06910 PF01609 Transposase DDE domain SD90_RS06920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD90_RS06920 PF02403 Seryl-tRNA synthetase N-terminal domain SD90_RS06925 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SD90_RS06930 PF17848 Acetyl-coA carboxylase zinc finger domain SD90_RS06930 PF01039 Carboxyl transferase domain SD90_RS06935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SD90_RS06935 PF00289 Biotin carboxylase, N-terminal domain SD90_RS06935 PF02785 Biotin carboxylase C-terminal domain SD90_RS06940 PF07977 FabA-like domain SD90_RS06945 PF00364 Biotin-requiring enzyme SD90_RS06950 PF02801 Beta-ketoacyl synthase, C-terminal domain SD90_RS06950 PF00109 Beta-ketoacyl synthase, N-terminal domain SD90_RS06960 PF00698 Acyl transferase domain SD90_RS06965 PF03060 Nitronate monooxygenase SD90_RS06970 PF00550 Phosphopantetheine attachment site SD90_RS06975 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SD90_RS06975 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SD90_RS06985 PF00378 Enoyl-CoA hydratase/isomerase SD90_RS06990 PF00226 DnaJ domain SD90_RS06990 PF00684 DnaJ central domain SD90_RS06990 PF01556 DnaJ C terminal domain SD90_RS06995 PF00012 Hsp70 protein SD90_RS07000 PF01025 GrpE SD90_RS07005 PF01628 HrcA protein C terminal domain SD90_RS07005 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SD90_RS07020 PF00300 Histidine phosphatase superfamily (branch 1) SD90_RS07025 PF04226 Transglycosylase associated protein SD90_RS07035 PF02934 GatB/GatE catalytic domain SD90_RS07035 PF02637 GatB domain SD90_RS07040 PF01425 Amidase SD90_RS07045 PF02686 Glu-tRNAGln amidotransferase C subunit SD90_RS07050 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SD90_RS07050 PF02896 PEP-utilising enzyme, TIM barrel domain SD90_RS07050 PF00391 PEP-utilising enzyme, mobile domain SD90_RS07055 PF00857 Isochorismatase family SD90_RS07060 PF06018 CodY GAF-like domain SD90_RS07060 PF08222 CodY helix-turn-helix domain SD90_RS07065 PF00155 Aminotransferase class I and II SD90_RS07080 PF17763 Glutaminase/Asparaginase C-terminal domain SD90_RS07080 PF00710 Asparaginase, N-terminal SD90_RS07090 PF00005 ABC transporter SD90_RS07095 PF00270 DEAD/DEAH box helicase SD90_RS07095 PF17191 RecG wedge domain SD90_RS07095 PF00271 Helicase conserved C-terminal domain SD90_RS07100 PF00005 ABC transporter SD90_RS07115 PF00664 ABC transporter transmembrane region SD90_RS07115 PF00005 ABC transporter SD90_RS07120 PF00664 ABC transporter transmembrane region SD90_RS07120 PF00005 ABC transporter SD90_RS07125 PF00005 ABC transporter SD90_RS07130 PF01032 FecCD transport family SD90_RS07135 PF01497 Periplasmic binding protein SD90_RS07150 PF05257 CHAP domain SD90_RS07150 PF01476 LysM domain SD90_RS07155 PF01168 Alanine racemase, N-terminal domain SD90_RS07155 PF00842 Alanine racemase, C-terminal domain SD90_RS07160 PF01648 4'-phosphopantetheinyl transferase superfamily SD90_RS07165 PF07517 SecA DEAD-like domain SD90_RS07165 PF02810 SEC-C motif SD90_RS07165 PF07516 SecA Wing and Scaffold domain SD90_RS07165 PF01043 SecA preprotein cross-linking domain SD90_RS07170 PF01238 Phosphomannose isomerase type I SD90_RS07175 PF00480 ROK family SD90_RS07185 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SD90_RS07185 PF00367 phosphotransferase system, EIIB SD90_RS07185 PF02378 Phosphotransferase system, EIIC SD90_RS07190 PF08244 Glycosyl hydrolases family 32 C terminal SD90_RS07190 PF00251 Glycosyl hydrolases family 32 N-terminal domain SD90_RS07195 PF00356 Bacterial regulatory proteins, lacI family SD90_RS07200 PF01029 NusB family SD90_RS07205 PF03780 Asp23 family, cell envelope-related function SD90_RS07210 PF09285 Elongation factor P, C-terminal SD90_RS07210 PF08207 Elongation factor P (EF-P) KOW-like domain SD90_RS07210 PF01132 Elongation factor P (EF-P) OB domain SD90_RS07215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SD90_RS07220 PF00557 Metallopeptidase family M24 SD90_RS07220 PF01321 Creatinase/Prolidase N-terminal domain SD90_RS07225 PF17755 UvrA DNA-binding domain SD90_RS07225 PF17760 UvrA interaction domain SD90_RS07225 PF00005 ABC transporter SD90_RS07240 PF01084 Ribosomal protein S18 SD90_RS07245 PF00436 Single-strand binding protein family SD90_RS07250 PF01250 Ribosomal protein S6 SD90_RS07260 PF00730 HhH-GPD superfamily base excision DNA repair protein SD90_RS07260 PF14815 NUDIX domain SD90_RS07265 PF01381 Helix-turn-helix SD90_RS07270 PF00085 Thioredoxin SD90_RS07280 PF01713 Smr domain SD90_RS07280 PF00488 MutS domain V SD90_RS07295 PF01351 Ribonuclease HII SD90_RS07295 PF11858 Domain of unknown function (DUF3378) SD90_RS07300 PF10502 Signal peptidase, peptidase S26 SD90_RS07305 PF13538 UvrD-like helicase C-terminal domain SD90_RS07305 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SD90_RS07305 PF14490 Helix-hairpin-helix containing domain SD90_RS07315 PF00817 impB/mucB/samB family SD90_RS07315 PF11799 impB/mucB/samB family C-terminal domain SD90_RS07315 PF11798 IMS family HHH motif SD90_RS07320 PF02901 Pyruvate formate lyase-like SD90_RS07320 PF01228 Glycine radical SD90_RS07325 PF00144 Beta-lactamase SD90_RS07340 PF00230 Major intrinsic protein SD90_RS07345 PF07690 Major Facilitator Superfamily SD90_RS07350 PF13545 Crp-like helix-turn-helix domain SD90_RS07355 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SD90_RS07355 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SD90_RS07355 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SD90_RS07370 PF02575 YbaB/EbfC DNA-binding family SD90_RS07375 PF07739 TipAS antibiotic-recognition domain SD90_RS07375 PF13411 MerR HTH family regulatory protein SD90_RS07380 PF02811 PHP domain SD90_RS07380 PF14579 Helix-hairpin-helix motif SD90_RS07380 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SD90_RS07380 PF07733 Bacterial DNA polymerase III alpha NTPase domain SD90_RS07380 PF11490 DNA polymerase III polC-type N-terminus II SD90_RS07380 PF01336 OB-fold nucleic acid binding domain SD90_RS07380 PF00929 Exonuclease SD90_RS07385 PF08279 HTH domain SD90_RS07385 PF04394 Protein of unknown function, DUF536 SD90_RS07395 PF01791 DeoC/LacD family aldolase SD90_RS07400 PF01773 Na+ dependent nucleoside transporter N-terminus SD90_RS07400 PF07662 Na+ dependent nucleoside transporter C-terminus SD90_RS07400 PF07670 Nucleoside recognition SD90_RS07405 PF01048 Phosphorylase superfamily SD90_RS07415 PF00253 Ribosomal protein S14p/S29e SD90_RS07420 PF00814 Glycoprotease family SD90_RS07425 PF00583 Acetyltransferase (GNAT) family SD90_RS07430 PF00814 Glycoprotease family SD90_RS07435 PF07288 Protein of unknown function (DUF1447) SD90_RS07440 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SD90_RS07440 PF00753 Metallo-beta-lactamase superfamily SD90_RS07440 PF17770 Ribonuclease J C-terminal domain SD90_RS07445 PF03951 Glutamine synthetase, beta-Grasp domain SD90_RS07445 PF00120 Glutamine synthetase, catalytic domain SD90_RS07450 PF13411 MerR HTH family regulatory protein SD90_RS07460 PF00162 Phosphoglycerate kinase SD90_RS07465 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SD90_RS07475 PF13684 Dihydroxyacetone kinase family SD90_RS07475 PF02734 DAK2 domain SD90_RS07480 PF03780 Asp23 family, cell envelope-related function SD90_RS07485 PF00830 Ribosomal L28 family SD90_RS07490 PF01116 Fructose-bisphosphate aldolase class-II SD90_RS07505 PF00117 Glutamine amidotransferase class-I SD90_RS07505 PF06418 CTP synthase N-terminus SD90_RS07510 PF05066 HB1, ASXL, restriction endonuclease HTH domain SD90_RS07515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SD90_RS07515 PF05698 Bacterial trigger factor protein (TF) C-terminus SD90_RS07515 PF05697 Bacterial trigger factor protein (TF) SD90_RS07520 PF00924 Mechanosensitive ion channel SD90_RS07525 PF04260 Protein of unknown function (DUF436) SD90_RS07530 PF07155 ECF-type riboflavin transporter, S component SD90_RS07535 PF08543 Phosphomethylpyrimidine kinase SD90_RS07540 PF01416 tRNA pseudouridine synthase SD90_RS07580 PF02595 Glycerate kinase family SD90_RS07585 PF18766 SWI2/SNF2 ATPase SD90_RS07585 PF12008 Type I restriction and modification enzyme - subunit R C terminal SD90_RS07585 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SD90_RS07595 PF12161 HsdM N-terminal domain SD90_RS07595 PF02384 N-6 DNA Methylase SD90_RS07605 PF00486 Transcriptional regulatory protein, C terminal SD90_RS07605 PF00072 Response regulator receiver domain SD90_RS07615 PF02687 FtsX-like permease family SD90_RS07620 PF00005 ABC transporter SD90_RS07625 PF00005 ABC transporter SD90_RS07625 PF00664 ABC transporter transmembrane region SD90_RS07640 PF04604 Type-A lantibiotic SD90_RS07645 PF00232 Glycosyl hydrolase family 1 SD90_RS07650 PF02378 Phosphotransferase system, EIIC SD90_RS07650 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD90_RS07655 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SD90_RS07660 PF01791 DeoC/LacD family aldolase SD90_RS07665 PF00294 pfkB family carbohydrate kinase SD90_RS07670 PF02502 Ribose/Galactose Isomerase SD90_RS07675 PF02502 Ribose/Galactose Isomerase SD90_RS07680 PF08220 DeoR-like helix-turn-helix domain SD90_RS07680 PF00455 DeoR C terminal sensor domain SD90_RS07700 PF00380 Ribosomal protein S9/S16 SD90_RS07705 PF00572 Ribosomal protein L13 SD90_RS07710 PF01381 Helix-turn-helix SD90_RS07720 PF02645 Uncharacterised protein, DegV family COG1307 SD90_RS07730 PF00588 SpoU rRNA Methylase family SD90_RS07730 PF08032 RNA 2'-O ribose methyltransferase substrate binding SD90_RS07740 PF00636 Ribonuclease III domain SD90_RS07745 PF01406 tRNA synthetases class I (C) catalytic domain SD90_RS07745 PF09190 DALR domain SD90_RS07755 PF06426 Serine acetyltransferase, N-terminal SD90_RS07755 PF00132 Bacterial transferase hexapeptide (six repeats) SD90_RS07765 PF03725 3' exoribonuclease family, domain 2 SD90_RS07765 PF00575 S1 RNA binding domain SD90_RS07765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SD90_RS07765 PF01138 3' exoribonuclease family, domain 1 SD90_RS07765 PF00013 KH domain SD90_RS07770 PF00923 Transaldolase/Fructose-6-phosphate aldolase SD90_RS07775 PF03611 PTS system sugar-specific permease component SD90_RS07780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD90_RS07785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SD90_RS07785 PF08279 HTH domain SD90_RS07785 PF05043 Mga helix-turn-helix domain SD90_RS07785 PF00874 PRD domain SD90_RS07785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD90_RS07790 PF00312 Ribosomal protein S15 SD90_RS07805 PF01327 Polypeptide deformylase SD90_RS07810 PF03358 NADPH-dependent FMN reductase SD90_RS07815 PF01047 MarR family SD90_RS07820 PF14480 DNA polymerase III polC-type N-terminus I SD90_RS07820 PF07733 Bacterial DNA polymerase III alpha NTPase domain SD90_RS07820 PF00929 Exonuclease SD90_RS07820 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SD90_RS07820 PF11490 DNA polymerase III polC-type N-terminus II SD90_RS07820 PF02811 PHP domain SD90_RS07825 PF03129 Anticodon binding domain SD90_RS07825 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SD90_RS07825 PF04073 Aminoacyl-tRNA editing domain SD90_RS07830 PF13180 PDZ domain SD90_RS07830 PF02163 Peptidase family M50 SD90_RS07840 PF01255 Putative undecaprenyl diphosphate synthase SD90_RS07845 PF02699 Preprotein translocase subunit SD90_RS07855 PF17999 Pullulanase N1-terminal domain SD90_RS07855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SD90_RS07855 PF00128 Alpha amylase, catalytic domain SD90_RS07860 PF00128 Alpha amylase, catalytic domain SD90_RS07865 PF03459 TOBE domain SD90_RS07865 PF17912 MalK OB fold domain SD90_RS07865 PF00005 ABC transporter SD90_RS07870 PF13556 PucR C-terminal helix-turn-helix domain SD90_RS07875 PF02821 Staphylokinase/Streptokinase family SD90_RS07880 PF02580 D-Tyr-tRNA(Tyr) deacylase SD90_RS07885 PF02824 TGS domain SD90_RS07885 PF04607 Region found in RelA / SpoT proteins SD90_RS07885 PF13291 ACT domain SD90_RS07890 PF04650 YSIRK type signal peptide SD90_RS07890 PF00746 LPXTG cell wall anchor motif SD90_RS07895 PF07972 NrdI Flavodoxin like SD90_RS07900 PF03372 Endonuclease/Exonuclease/phosphatase family SD90_RS07905 PF00367 phosphotransferase system, EIIB SD90_RS07905 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SD90_RS07905 PF02378 Phosphotransferase system, EIIC SD90_RS07910 PF04452 RNA methyltransferase SD90_RS07925 PF01425 Amidase SD90_RS07930 PF04715 Anthranilate synthase component I, N terminal region SD90_RS07930 PF00425 chorismate binding enzyme SD90_RS07935 PF00117 Glutamine amidotransferase class-I SD90_RS07940 PF16193 AAA C-terminal domain SD90_RS07940 PF12002 MgsA AAA+ ATPase C terminal SD90_RS07940 PF05496 Holliday junction DNA helicase RuvB P-loop domain SD90_RS07950 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SD90_RS07950 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SD90_RS07955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SD90_RS07960 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS07965 PF00528 Binding-protein-dependent transport system inner membrane component SD90_RS07970 PF00005 ABC transporter SD90_RS07970 PF12558 ATP-binding cassette cobalt transporter SD90_RS07975 PF00005 ABC transporter SD90_RS07980 PF05532 CsbD-like SD90_RS07990 PF01297 Zinc-uptake complex component A periplasmic SD90_RS08000 PF06280 Fn3-like domain SD90_RS08000 PF02225 PA domain SD90_RS08000 PF00082 Subtilase family SD90_RS08005 PF04650 YSIRK type signal peptide SD90_RS08005 PF02370 M protein repeat SD90_RS08005 PF00746 LPXTG cell wall anchor motif SD90_RS08010 PF12107 Plasminogen (Pg) ligand in fibrinolytic pathway SD90_RS08015 PF04650 YSIRK type signal peptide SD90_RS08015 PF00746 LPXTG cell wall anchor motif SD90_RS08020 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SD90_RS08020 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SD90_RS08020 PF05043 Mga helix-turn-helix domain SD90_RS08030 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SD90_RS08030 PF05257 CHAP domain SD90_RS08035 PF00512 His Kinase A (phospho-acceptor) domain SD90_RS08035 PF02702 Osmosensitive K+ channel His kinase sensor domain SD90_RS08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SD90_RS08035 PF13493 Domain of unknown function (DUF4118) SD90_RS08040 PF00486 Transcriptional regulatory protein, C terminal SD90_RS08040 PF00072 Response regulator receiver domain SD90_RS08045 PF12704 MacB-like periplasmic core domain SD90_RS08045 PF02687 FtsX-like permease family SD90_RS08050 PF00005 ABC transporter SD90_RS08075 PF13145 PPIC-type PPIASE domain SD90_RS08085 PF01640 Peptidase C10 family SD90_RS08085 PF13734 Spi protease inhibitor SD90_RS08100 PF04608 Phosphatidylglycerophosphatase A SD90_RS08105 PF00465 Iron-containing alcohol dehydrogenase SD90_RS08110 PF00923 Transaldolase/Fructose-6-phosphate aldolase SD90_RS08115 PF02901 Pyruvate formate lyase-like SD90_RS08115 PF01228 Glycine radical SD90_RS08120 PF02378 Phosphotransferase system, EIIC SD90_RS08125 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SD90_RS08130 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SD90_RS08135 PF04198 Putative sugar-binding domain SD90_RS08140 PF08220 DeoR-like helix-turn-helix domain SD90_RS08140 PF00455 DeoR C terminal sensor domain SD90_RS08145 PF04055 Radical SAM superfamily SD90_RS08160 PF00912 Transglycosylase SD90_RS08160 PF00905 Penicillin binding protein transpeptidase domain SD90_RS08175 PF01479 S4 domain SD90_RS08175 PF00849 RNA pseudouridylate synthase SD90_RS08185 PF03577 Peptidase family C69 SD90_RS08195 PF00118 TCP-1/cpn60 chaperonin family SD90_RS08200 PF00166 Chaperonin 10 Kd subunit SD90_RS08205 PF02861 Clp amino terminal domain, pathogenicity island component SD90_RS08205 PF17871 AAA lid domain SD90_RS08205 PF07724 AAA domain (Cdc48 subfamily) SD90_RS08205 PF00004 ATPase family associated with various cellular activities (AAA) SD90_RS08205 PF10431 C-terminal, D2-small domain, of ClpB protein SD90_RS08210 PF05848 CtsR N-terminal HTH domain SD90_RS08210 PF17727 CtsR C-terminal dimerization domain SD90_RS08215 PF00313 'Cold-shock' DNA-binding domain SD90_RS08225 PF00578 AhpC/TSA family SD90_RS08230 PF07992 Pyridine nucleotide-disulphide oxidoreductase SD90_RS08230 PF13192 Thioredoxin domain SD90_RS08235 PF01979 Amidohydrolase family SD90_RS08240 PF17391 Urocanase N-terminal domain SD90_RS08240 PF17392 Urocanase C-terminal domain SD90_RS08240 PF01175 Urocanase Rossmann-like domain SD90_RS08245 PF07837 Formiminotransferase domain, N-terminal subdomain SD90_RS08245 PF02971 Formiminotransferase domain SD90_RS08250 PF04961 Formiminotransferase-cyclodeaminase SD90_RS08255 PF01268 Formate--tetrahydrofolate ligase SD90_RS08265 PF13520 Amino acid permease SD90_RS08270 PF00221 Aromatic amino acid lyase SD90_RS08275 PF00491 Arginase family SD90_RS08285 PF00318 Ribosomal protein S2 SD90_RS08290 PF00889 Elongation factor TS SD90_RS08295 PF05649 Peptidase family M13 SD90_RS08295 PF01431 Peptidase family M13 SD90_RS08300 PF00128 Alpha amylase, catalytic domain SD90_RS08300 PF16657 Maltogenic Amylase, C-terminal domain SD90_RS08305 PF02378 Phosphotransferase system, EIIC SD90_RS08305 PF00367 phosphotransferase system, EIIB SD90_RS08310 PF07702 UTRA domain SD90_RS08310 PF00392 Bacterial regulatory proteins, gntR family SD90_RS08320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SD90_RS08325 PF03883 Peroxide stress protein YaaA SD90_RS08340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SD90_RS08345 PF03477 ATP cone domain SD90_RS08345 PF13597 Anaerobic ribonucleoside-triphosphate reductase SD90_RS08355 PF06949 Protein of unknown function (DUF1292) SD90_RS08360 PF03652 Holliday junction resolvase SD90_RS08365 PF06135 IreB regulatory phosphoprotein SD90_RS08370 PF03960 ArsC family SD90_RS08375 PF00154 recA bacterial DNA recombination protein SD90_RS08380 PF02464 Competence-damaged protein SD90_RS08380 PF00994 Probable molybdopterin binding domain SD90_RS08380 PF18146 Damage-inducible protein CinA KH domain SD90_RS08385 PF13673 Acetyltransferase (GNAT) domain SD90_RS08385 PF13302 Acetyltransferase (GNAT) domain SD90_RS08385 PF03352 Methyladenine glycosylase SD90_RS08385 PF00117 Glutamine amidotransferase class-I SD90_RS08385 PF00958 GMP synthase C terminal domain SD90_RS08390 PF07499 RuvA, C-terminal domain SD90_RS08390 PF01330 RuvA N terminal domain SD90_RS08400 PF01119 DNA mismatch repair protein, C-terminal domain SD90_RS08400 PF08676 MutL C terminal dimerisation domain SD90_RS08405 PF00589 Phage integrase family SD90_RS08405 PF14659 Phage integrase, N-terminal SAM-like domain SD90_RS08425 PF02498 BRO family, N-terminal domain SD90_RS08425 PF10548 P22AR C-terminal domain SD90_RS08495 PF00488 MutS domain V SD90_RS08495 PF05190 MutS family domain IV SD90_RS08495 PF05192 MutS domain III SD90_RS08495 PF05188 MutS domain II SD90_RS08495 PF01624 MutS domain I SD90_RS08505 PF02863 Arginine repressor, C-terminal domain SD90_RS08505 PF01316 Arginine repressor, DNA binding domain SD90_RS08510 PF05746 DALR anticodon binding domain SD90_RS08510 PF03485 Arginyl tRNA synthetase N terminal domain SD90_RS08510 PF00750 tRNA synthetases class I (R) SD90_RS08520 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD90_RS08520 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD90_RS08525 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD90_RS08525 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD90_RS08530 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD90_RS08530 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD90_RS08535 PF01336 OB-fold nucleic acid binding domain SD90_RS08535 PF00152 tRNA synthetases class II (D, K and N) SD90_RS08535 PF02938 GAD domain SD90_RS08540 PF13393 Histidyl-tRNA synthetase SD90_RS08540 PF03129 Anticodon binding domain SD90_RS08545 PF01783 Ribosomal L32p protein family SD90_RS08550 PF00471 Ribosomal protein L33 SD90_RS08560 PF01022 Bacterial regulatory protein, arsR family SD90_RS08590 PF00293 NUDIX domain SD90_RS08595 PF03551 Transcriptional regulator PadR-like family SD90_RS08620 PF00163 Ribosomal protein S4/S9 N-terminal domain SD90_RS08620 PF01479 S4 domain SD90_RS08630 PF00772 DnaB-like helicase N terminal domain SD90_RS08630 PF03796 DnaB-like helicase C terminal domain SD90_RS08635 PF03948 Ribosomal protein L9, C-terminal domain SD90_RS08635 PF01281 Ribosomal protein L9, N-terminal domain SD90_RS08640 PF01368 DHH family SD90_RS08640 PF02272 DHHA1 domain SD90_RS08645 PF01134 Glucose inhibited division protein A SD90_RS08645 PF13932 GidA associated domain SD90_RS08660 PF03315 Serine dehydratase beta chain SD90_RS08660 PF01842 ACT domain SD90_RS08665 PF03313 Serine dehydratase alpha chain SD90_RS08670 PF06737 Transglycosylase-like domain SD90_RS08675 PF02361 Cobalt transport protein SD90_RS08680 PF00005 ABC transporter SD90_RS08685 PF00005 ABC transporter SD90_RS08690 PF01066 CDP-alcohol phosphatidyltransferase SD90_RS08700 PF05193 Peptidase M16 inactive domain SD90_RS08700 PF00675 Insulinase (Peptidase family M16) SD90_RS08710 PF00535 Glycosyl transferase family 2 SD90_RS08715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SD90_RS08715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SD90_RS08715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SD90_RS08720 PF00483 Nucleotidyl transferase SD90_RS08730 PF02463 RecF/RecN/SMC N terminal domain SD90_RS08735 PF06800 Sugar transport protein SD90_RS08740 PF00571 CBS domain SD90_RS08740 PF00478 IMP dehydrogenase / GMP reductase domain SD90_RS08745 PF00579 tRNA synthetases class I (W and Y) SD90_RS08750 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SD90_RS08750 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SD90_RS08755 PF00005 ABC transporter SD90_RS08755 PF12848 ABC transporter SD90_RS08775 PF13936 Helix-turn-helix domain SD90_RS08785 PF02590 Predicted SPOUT methyltransferase SD90_RS08790 PF13180 PDZ domain