SPY49_RS00005	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
SPY49_RS00010	SM00480	DNA polymerase III beta subunit
SPY49_RS00030	SM00487	DEAD-like helicases superfamily
SPY49_RS00030	SM00490	helicase superfamily c-terminal domain
SPY49_RS00030	SM00982	SPY49_RS00030
SPY49_RS00030	SM01058	CarD-like/TRCF domain
SPY49_RS00035	SM00363	S4 RNA-binding domain
SPY49_RS00060	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS00245	SM01400	SPY49_RS00245
SPY49_RS00270	SM01211	SPY49_RS00270
SPY49_RS00290	SM00798	AICARFT/IMPCHase bienzyme
SPY49_RS00290	SM00851	MGS-like domain
SPY49_RS00300	SM01209	SPY49_RS00300
SPY49_RS00300	SM01210	SPY49_RS00300
SPY49_RS00305	SM01001	AIR carboxylase
SPY49_RS00320	SM00998	Adenylosuccinate lyase C-terminus
SPY49_RS00325	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS00330	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS00335	SM00226	Low molecular weight phosphatase family
SPY49_RS00340	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
SPY49_RS00355	SM00829	Enoylreductase
SPY49_RS00365	SM01403	SPY49_RS00365
SPY49_RS00385	SM01382	SPY49_RS00385
SPY49_RS00385	SM01383	SPY49_RS00385
SPY49_RS00400	SM00322	K homology RNA-binding domain
SPY49_RS00420	SM01374	SPY49_RS00420
SPY49_RS00425	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SPY49_RS00480	SM00316	Ribosomal protein S1-like RNA-binding domain
SPY49_RS00495	SM00662	RNA polymerases D
SPY49_RS00600	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPY49_RS00605	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS00620	SM00363	S4 RNA-binding domain
SPY49_RS00635	SM00663	RNA polymerase I subunit A N-terminus
SPY49_RS00780	SM00342	helix_turn_helix, arabinose operon control protein
SPY49_RS00810	SM00882	Coenzyme A transferase
SPY49_RS00815	SM00882	Coenzyme A transferase
SPY49_RS00890	SM00788	Adenylosuccinate synthetase
SPY49_RS00900	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
SPY49_RS00900	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SPY49_RS00960	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
SPY49_RS00970	SM01007	Class II Aldolase and Adducin N-terminal domain
SPY49_RS00985	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS00995	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
SPY49_RS00995	SM00474	3'-5' exonuclease
SPY49_RS00995	SM00475	5'-3' exonuclease
SPY49_RS00995	SM00482	DNA polymerase A domain
SPY49_RS01000	SM00881	CoA binding domain
SPY49_RS01085	SM00849	Metallo-beta-lactamase superfamily
SPY49_RS01095	SM00460	Transglutaminase/protease-like homologues
SPY49_RS01135	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01140	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01155	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01160	SM00947	Carbonic anhydrase
SPY49_RS01185	SM00448	cheY-homologous receiver domain
SPY49_RS01185	SM00850	LytTr DNA-binding domain
SPY49_RS01200	SM00393	Putative single-stranded nucleic acids-binding domain
SPY49_RS01200	SM01245	SPY49_RS01200
SPY49_RS01235	SM01130	SPY49_RS01235
SPY49_RS01260	SM00650	Ribosomal RNA adenine dimethylases
SPY49_RS01275	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
SPY49_RS01310	SM00838	Elongation factor G C-terminus
SPY49_RS01310	SM00889	Elongation factor G, domain IV
SPY49_RS01315	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
SPY49_RS01320	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01350	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01400	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01405	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01460	SM01103	SPY49_RS01460
SPY49_RS01470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPY49_RS01505	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01505	SM00930	SPY49_RS01505
SPY49_RS01555	SM00448	cheY-homologous receiver domain
SPY49_RS01555	SM00862	Transcriptional regulatory protein, C terminal
SPY49_RS01560	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPY49_RS01560	SM00387	Histidine kinase-like ATPases
SPY49_RS01560	SM00388	His Kinase A (phosphoacceptor) domain
SPY49_RS01585	SM00487	DEAD-like helicases superfamily
SPY49_RS01585	SM00490	helicase superfamily c-terminal domain
SPY49_RS01625	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SPY49_RS01660	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPY49_RS01680	SM00363	S4 RNA-binding domain
SPY49_RS01685	SM01234	SPY49_RS01685
SPY49_RS01705	SM00729	Elongator protein 3, MiaB family, Radical SAM
SPY49_RS01715	SM01091	Transporter associated domain
SPY49_RS01725	SM01131	SPY49_RS01725
SPY49_RS01750	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS01960	SM00885	D5 N terminal like
SPY49_RS01965	SM00942	Primase C terminal 1 (PriCT-1)
SPY49_RS02000	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS02055	SM00529	Helix-turn-helix diphteria tox regulatory element
SPY49_RS02055	SM00899	SPY49_RS02055
SPY49_RS02065	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS02080	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS02080	SM00843	SPY49_RS02080
SPY49_RS02090	SM00649	Ribosomal protein L11/L12
SPY49_RS02125	SM00257	Lysin motif
SPY49_RS02140	SM00986	Uracil DNA glycosylase superfamily
SPY49_RS02140	SM00987	UreE urease accessory protein, C-terminal domain 
SPY49_RS02230	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS02235	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
SPY49_RS02235	SM01232	SPY49_RS02235
SPY49_RS02260	SM00316	Ribosomal protein S1-like RNA-binding domain
SPY49_RS02260	SM00955	SPY49_RS02260
SPY49_RS02310	SM00354	helix_turn _helix lactose operon repressor
SPY49_RS02325	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SPY49_RS02330	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS02365	SM00448	cheY-homologous receiver domain
SPY49_RS02365	SM00862	Transcriptional regulatory protein, C terminal
SPY49_RS02370	SM00091	PAS domain
SPY49_RS02370	SM00387	Histidine kinase-like ATPases
SPY49_RS02370	SM00388	His Kinase A (phosphoacceptor) domain
SPY49_RS02375	SM00849	Metallo-beta-lactamase superfamily
SPY49_RS02380	SM00358	Double-stranded RNA binding motif
SPY49_RS02380	SM00535	Ribonuclease III family
SPY49_RS02385	SM00968	SMC proteins Flexible Hinge Domain
SPY49_RS02435	SM00984	UDP binding domain
SPY49_RS02530	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS02530	SM00962	SRP54-type protein, GTPase domain
SPY49_RS02530	SM00963	SRP54-type protein, helical bundle domain
SPY49_RS02540	SM01061	CAT RNA binding domain
SPY49_RS02570	SM00316	Ribosomal protein S1-like RNA-binding domain
SPY49_RS02570	SM00732	Likely ribonuclease with RNase H fold.
SPY49_RS02575	SM00731	SprT homologues.
SPY49_RS02640	SM00855	Phosphoglycerate mutase family
SPY49_RS02720	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPY49_RS02730	SM00831	Cation transporter/ATPase, N-terminus
SPY49_RS02735	SM00354	helix_turn _helix lactose operon repressor
SPY49_RS02800	SM00937	SPY49_RS02800
SPY49_RS02805	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS02825	SM00479	SPY49_RS02825
SPY49_RS02825	SM00487	DEAD-like helicases superfamily
SPY49_RS02825	SM00491	SPY49_RS02825
SPY49_RS02865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS02865	SM00866	SPY49_RS02865
SPY49_RS02890	SM00830	Chorismate mutase type II
SPY49_RS02915	SM00387	Histidine kinase-like ATPases
SPY49_RS02915	SM00433	TopoisomeraseII
SPY49_RS02930	SM01192	SPY49_RS02930
SPY49_RS02930	SM01193	SPY49_RS02930
SPY49_RS02980	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03005	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPY49_RS03005	SM00292	breast cancer carboxy-terminal domain
SPY49_RS03005	SM00532	Ligase N family
SPY49_RS03010	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SPY49_RS03045	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03080	SM00873	B3/4 domain
SPY49_RS03080	SM00874	tRNA synthetase B5 domain
SPY49_RS03080	SM00896	Ferredoxin-fold anticodon binding domain
SPY49_RS03100	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03135	SM00400	zinc finger
SPY49_RS03135	SM00493	SPY49_RS03135
SPY49_RS03170	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03290	SM00981	SPY49_RS03290
SPY49_RS03325	SM00363	S4 RNA-binding domain
SPY49_RS03345	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
SPY49_RS03350	SM00851	MGS-like domain
SPY49_RS03350	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
SPY49_RS03350	SM01209	SPY49_RS03350
SPY49_RS03360	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03430	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPY49_RS03430	SM01134	SPY49_RS03430
SPY49_RS03445	SM00047	Lysozyme subfamily 2
SPY49_RS03450	SM00047	Lysozyme subfamily 2
SPY49_RS03490	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03505	SM00954	Region found in RelA / SpoT proteins
SPY49_RS03510	SM00448	cheY-homologous receiver domain
SPY49_RS03510	SM00862	Transcriptional regulatory protein, C terminal
SPY49_RS03515	SM00387	Histidine kinase-like ATPases
SPY49_RS03515	SM00388	His Kinase A (phosphoacceptor) domain
SPY49_RS03560	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03560	SM00994	ClpX C4-type zinc finger
SPY49_RS03560	SM01086	C-terminal, D2-small domain, of ClpB protein
SPY49_RS03575	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS03575	SM01086	C-terminal, D2-small domain, of ClpB protein
SPY49_RS03620	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
SPY49_RS03635	SM00062	Bacterial periplasmic substrate-binding proteins
SPY49_RS03645	SM00986	Uracil DNA glycosylase superfamily
SPY49_RS03645	SM00987	UreE urease accessory protein, C-terminal domain 
SPY49_RS03655	SM01207	SPY49_RS03655
SPY49_RS03660	SM00387	Histidine kinase-like ATPases
SPY49_RS03660	SM00433	TopoisomeraseII
SPY49_RS03665	SM00434	DNA Topoisomerase IV
SPY49_RS03690	SM00316	Ribosomal protein S1-like RNA-binding domain
SPY49_RS03705	SM00450	Rhodanese Homology Domain
SPY49_RS03760	SM00478	endonuclease III
SPY49_RS03760	SM00525	SPY49_RS03760
SPY49_RS03810	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS03860	SM00482	DNA polymerase A domain
SPY49_RS03865	SM00885	D5 N terminal like
SPY49_RS03870	SM00990	SPY49_RS03870
SPY49_RS03875	SM00487	DEAD-like helicases superfamily
SPY49_RS04000	SM00287	Bacterial SH3 domain homologues
SPY49_RS04025	SM00028	Tetratricopeptide repeats
SPY49_RS04045	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04050	SM00849	Metallo-beta-lactamase superfamily
SPY49_RS04065	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04075	SM00861	Transketolase, pyrimidine binding domain
SPY49_RS04135	SM00729	Elongator protein 3, MiaB family, Radical SAM
SPY49_RS04185	SM00838	Elongation factor G C-terminus
SPY49_RS04230	SM00342	helix_turn_helix, arabinose operon control protein
SPY49_RS04230	SM00448	cheY-homologous receiver domain
SPY49_RS04245	SM00465	GIY-YIG type nucleases (URI domain)
SPY49_RS04305	SM00905	Dihydroneopterin aldolase
SPY49_RS04320	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04340	SM00448	cheY-homologous receiver domain
SPY49_RS04345	SM00091	PAS domain
SPY49_RS04355	SM00919	Malic enzyme, NAD binding domain
SPY49_RS04355	SM01274	SPY49_RS04355
SPY49_RS04360	SM00829	Enoylreductase
SPY49_RS04395	SM00881	CoA binding domain
SPY49_RS04410	SM01400	SPY49_RS04410
SPY49_RS04415	SM01118	SPY49_RS04415
SPY49_RS04420	SM00954	Region found in RelA / SpoT proteins
SPY49_RS04450	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04460	SM01240	SPY49_RS04460
SPY49_RS04490	SM00937	SPY49_RS04490
SPY49_RS04525	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04530	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04545	SM00434	DNA Topoisomerase IV
SPY49_RS04565	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SPY49_RS04595	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
SPY49_RS04595	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
SPY49_RS04595	SM00493	SPY49_RS04595
SPY49_RS04655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS04655	SM00895	SPY49_RS04655
SPY49_RS04710	SM00764	Citrate lyase ligase C-terminal domain
SPY49_RS04725	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS04730	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04730	SM00962	SRP54-type protein, GTPase domain
SPY49_RS04730	SM00963	SRP54-type protein, helical bundle domain
SPY49_RS04740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS04740	SM00866	SPY49_RS04740
SPY49_RS04760	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04775	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS04785	SM00155	Phospholipase D. Active site motifs.
SPY49_RS04805	SM00506	Appr-1"-p processing enzyme
SPY49_RS04860	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04890	SM00387	Histidine kinase-like ATPases
SPY49_RS04890	SM00388	His Kinase A (phosphoacceptor) domain
SPY49_RS04895	SM00448	cheY-homologous receiver domain
SPY49_RS04895	SM00862	Transcriptional regulatory protein, C terminal
SPY49_RS04910	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04915	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04955	SM00904	Riboflavin kinase
SPY49_RS04985	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS04995	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS05050	SM00062	Bacterial periplasmic substrate-binding proteins
SPY49_RS05055	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS05090	SM00481	DNA polymerase alpha chain like domain
SPY49_RS05095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS05100	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS05130	SM00354	helix_turn _helix lactose operon repressor
SPY49_RS05190	SM00487	DEAD-like helicases superfamily
SPY49_RS05190	SM00490	helicase superfamily c-terminal domain
SPY49_RS05195	SM00062	Bacterial periplasmic substrate-binding proteins
SPY49_RS05195	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
SPY49_RS05200	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS05300	SM00363	S4 RNA-binding domain
SPY49_RS05360	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPY49_RS05385	SM00364	Leucine-rich repeats, bacterial type
SPY49_RS05385	SM00365	Leucine-rich repeat, SDS22-like subfamily
SPY49_RS05385	SM00369	Leucine-rich repeats, typical (most populated) subfamily
SPY49_RS05395	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS05420	SM00487	DEAD-like helicases superfamily
SPY49_RS05420	SM00490	helicase superfamily c-terminal domain
SPY49_RS05495	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS05500	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SPY49_RS05530	SM00363	S4 RNA-binding domain
SPY49_RS05575	SM00849	Metallo-beta-lactamase superfamily
SPY49_RS05580	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPY49_RS05585	SM00563	Phosphate acyltransferases
SPY49_RS05605	SM00487	DEAD-like helicases superfamily
SPY49_RS05605	SM00490	helicase superfamily c-terminal domain
SPY49_RS05630	SM00493	SPY49_RS05630
SPY49_RS05655	SM00855	Phosphoglycerate mutase family
SPY49_RS05670	SM00411	bacterial (prokaryotic) histone like domain
SPY49_RS05705	SM00363	S4 RNA-binding domain
SPY49_RS05740	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS05755	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS05755	SM01086	C-terminal, D2-small domain, of ClpB protein
SPY49_RS05780	SM00363	S4 RNA-binding domain
SPY49_RS05800	SM00864	Tubulin/FtsZ family, GTPase domain
SPY49_RS05800	SM00865	Tubulin/FtsZ family, C-terminal domain
SPY49_RS05805	SM00842	Cell division protein FtsA
SPY49_RS05830	SM00838	Elongation factor G C-terminus
SPY49_RS05835	SM00450	Rhodanese Homology Domain
SPY49_RS05870	SM00354	helix_turn _helix lactose operon repressor
SPY49_RS05925	SM00419	helix_turn_helix, cAMP Regulatory protein
SPY49_RS05935	SM00873	B3/4 domain
SPY49_RS05945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPY49_RS05945	SM00387	Histidine kinase-like ATPases
SPY49_RS05950	SM00342	helix_turn_helix, arabinose operon control protein
SPY49_RS05950	SM00448	cheY-homologous receiver domain
SPY49_RS06000	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPY49_RS06000	SM00487	DEAD-like helicases superfamily
SPY49_RS06070	SM00342	helix_turn_helix, arabinose operon control protein
SPY49_RS06070	SM00448	cheY-homologous receiver domain
SPY49_RS06075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPY49_RS06115	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS06120	SM01149	SPY49_RS06120
SPY49_RS06125	SM00872	Alpha mannosidase, middle domain
SPY49_RS06210	SM00487	DEAD-like helicases superfamily
SPY49_RS06210	SM00490	helicase superfamily c-terminal domain
SPY49_RS06225	SM00316	Ribosomal protein S1-like RNA-binding domain
SPY49_RS06235	SM00421	helix_turn_helix, Lux Regulon
SPY49_RS06235	SM00448	cheY-homologous receiver domain
SPY49_RS06240	SM00387	Histidine kinase-like ATPases
SPY49_RS06250	SM00220	Serine/Threonine protein kinases, catalytic domain
SPY49_RS06250	SM00740	SPY49_RS06250
SPY49_RS06255	SM00331	Sigma factor PP2C-like phosphatases
SPY49_RS06255	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
SPY49_RS06270	SM00487	DEAD-like helicases superfamily
SPY49_RS06270	SM00490	helicase superfamily c-terminal domain
SPY49_RS06275	SM01409	SPY49_RS06275
SPY49_RS06280	SM00072	Guanylate kinase homologues.
SPY49_RS06285	SM00322	K homology RNA-binding domain
SPY49_RS06285	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPY49_RS06300	SM00882	Coenzyme A transferase
SPY49_RS06305	SM00882	Coenzyme A transferase
SPY49_RS06330	SM00981	SPY49_RS06330
SPY49_RS06385	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06395	SM00487	DEAD-like helicases superfamily
SPY49_RS06395	SM00490	helicase superfamily c-terminal domain
SPY49_RS06405	SM00740	SPY49_RS06405
SPY49_RS06440	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06450	SM00861	Transketolase, pyrimidine binding domain
SPY49_RS06550	SM01133	SPY49_RS06550
SPY49_RS06585	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPY49_RS06585	SM01134	SPY49_RS06585
SPY49_RS06630	SM00322	K homology RNA-binding domain
SPY49_RS06660	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06735	SM00878	Biotin carboxylase C-terminal domain
SPY49_RS06750	SM00825	Beta-ketoacyl synthase
SPY49_RS06755	SM00822	SPY49_RS06755
SPY49_RS06760	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
SPY49_RS06780	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPY49_RS06790	SM00271	DnaJ molecular chaperone homology domain
SPY49_RS06810	SM00047	Lysozyme subfamily 2
SPY49_RS06820	SM00855	Phosphoglycerate mutase family
SPY49_RS06835	SM00845	GatB domain
SPY49_RS06880	SM00870	SPY49_RS06880
SPY49_RS06890	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06895	SM00487	DEAD-like helicases superfamily
SPY49_RS06895	SM00490	helicase superfamily c-terminal domain
SPY49_RS06900	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06915	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06920	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06925	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS06945	SM00365	Leucine-rich repeat, SDS22-like subfamily
SPY49_RS06945	SM00369	Leucine-rich repeats, typical (most populated) subfamily
SPY49_RS06945	SM00725	NEAr Transporter domain
SPY49_RS06955	SM01005	Alanine racemase, C-terminal domain
SPY49_RS06965	SM00957	SecA DEAD-like domain
SPY49_RS06965	SM00958	SecA preprotein cross-linking domain
SPY49_RS07000	SM00640	Glycosyl hydrolases family 32
SPY49_RS07005	SM00354	helix_turn _helix lactose operon repressor
SPY49_RS07020	SM00841	Elongation factor P, C-terminal
SPY49_RS07020	SM01185	SPY49_RS07020
SPY49_RS07035	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS07070	SM00478	endonuclease III
SPY49_RS07075	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS07085	SM00014	Acid phosphatase homologues
SPY49_RS07090	SM00463	Small MutS-related domain
SPY49_RS07090	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
SPY49_RS07090	SM00534	ATPase domain of DNA mismatch repair MUTS family
SPY49_RS07115	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS07160	SM00419	helix_turn_helix, cAMP Regulatory protein
SPY49_RS07165	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
SPY49_RS07165	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
SPY49_RS07170	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS07175	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS07185	SM00892	DNA/RNA non-specific endonuclease
SPY49_RS07205	SM00047	Lysozyme subfamily 2
SPY49_RS07205	SM00287	Bacterial SH3 domain homologues
SPY49_RS07490	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS07500	SM01040	BRO family, N-terminal domain
SPY49_RS07515	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS07530	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS07550	SM00422	helix_turn_helix, mercury resistance
SPY49_RS07555	SM00479	SPY49_RS07555
SPY49_RS07585	SM01133	SPY49_RS07585
SPY49_RS07600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS07630	SM00849	Metallo-beta-lactamase superfamily
SPY49_RS07635	SM01230	SPY49_RS07635
SPY49_RS07640	SM00422	helix_turn_helix, mercury resistance
SPY49_RS07665	SM01120	SPY49_RS07665
SPY49_RS07665	SM01121	SPY49_RS07665
SPY49_RS07775	SM00487	DEAD-like helicases superfamily
SPY49_RS07795	SM00421	helix_turn_helix, Lux Regulon
SPY49_RS07795	SM00448	cheY-homologous receiver domain
SPY49_RS07810	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS07845	SM01133	SPY49_RS07845
SPY49_RS07865	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPY49_RS07865	SM01134	SPY49_RS07865
SPY49_RS07890	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS07910	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SPY49_RS07925	SM00840	SPY49_RS07925
SPY49_RS07950	SM00316	Ribosomal protein S1-like RNA-binding domain
SPY49_RS07950	SM00322	K homology RNA-binding domain
SPY49_RS07975	SM01387	SPY49_RS07975
SPY49_RS07995	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPY49_RS08000	SM00479	SPY49_RS08000
SPY49_RS08000	SM00481	DNA polymerase alpha chain like domain
SPY49_RS08025	SM01323	SPY49_RS08025
SPY49_RS08035	SM00642	Alpha-amylase domain
SPY49_RS08040	SM00642	Alpha-amylase domain
SPY49_RS08045	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08065	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPY49_RS08065	SM00954	Region found in RelA / SpoT proteins
SPY49_RS08175	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08220	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08225	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPY49_RS08285	SM00387	Histidine kinase-like ATPases
SPY49_RS08285	SM00388	His Kinase A (phosphoacceptor) domain
SPY49_RS08290	SM00448	cheY-homologous receiver domain
SPY49_RS08290	SM00862	Transcriptional regulatory protein, C terminal
SPY49_RS08300	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08325	SM00327	von Willebrand factor (vWF) type A domain
SPY49_RS08355	SM00892	DNA/RNA non-specific endonuclease
SPY49_RS08400	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPY49_RS08400	SM01134	SPY49_RS08400
SPY49_RS08445	SM00530	Helix-turn-helix XRE-family like proteins 
SPY49_RS08455	SM00883	Chaperonin 10 Kd subunit
SPY49_RS08460	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08460	SM01086	C-terminal, D2-small domain, of ClpB protein
SPY49_RS08470	SM00357	Cold shock protein domain
SPY49_RS08510	SM01221	SPY49_RS08510
SPY49_RS08510	SM01222	SPY49_RS08510
SPY49_RS08545	SM00028	Tetratricopeptide repeats
SPY49_RS08545	SM01043	Bacterial transcriptional activator domain
SPY49_RS08565	SM00642	Alpha-amylase domain
SPY49_RS08575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPY49_RS08575	SM00866	SPY49_RS08575
SPY49_RS08625	SM00732	Likely ribonuclease with RNase H fold.
SPY49_RS08640	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08645	SM00852	Probable molybdopterin binding domain
SPY49_RS08655	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPY49_RS08665	SM00853	MutL C terminal dimerisation domain
SPY49_RS08665	SM01340	SPY49_RS08665
SPY49_RS08670	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
SPY49_RS08670	SM00534	ATPase domain of DNA mismatch repair MUTS family
SPY49_RS08685	SM00836	DALR anticodon binding domain
SPY49_RS08685	SM01016	Arginyl tRNA synthetase N terminal dom
SPY49_RS08740	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SPY49_RS08800	SM00363	S4 RNA-binding domain
SPY49_RS08800	SM01390	SPY49_RS08800
SPY49_RS08825	SM01228	SPY49_RS08825
SPY49_RS08860	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08865	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08895	SM00984	UDP binding domain
SPY49_RS08920	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPY49_RS08920	SM01240	SPY49_RS08920
SPY49_RS08935	SM00382	ATPases associated with a variety of cellular activities
SPY49_RS08970	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SPY49_RS08975	SM00470	ParB-like nuclease domain
