locus-tag class description SPS_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SPS_RS00005 PF00308 Bacterial dnaA protein SPS_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SPS_RS00010 PF02767 DNA polymerase III beta subunit, central domain SPS_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SPS_RS00020 PF06071 Protein of unknown function (DUF933) SPS_RS00020 PF01926 50S ribosome-binding GTPase SPS_RS00025 PF01195 Peptidyl-tRNA hydrolase SPS_RS00030 PF00270 DEAD/DEAH box helicase SPS_RS00030 PF00271 Helicase conserved C-terminal domain SPS_RS00030 PF03461 TRCF domain SPS_RS00030 PF02559 CarD-like/TRCF domain SPS_RS00030 PF17757 UvrB interaction domain SPS_RS00035 PF01479 S4 domain SPS_RS00050 PF01171 PP-loop family SPS_RS00055 PF00156 Phosphoribosyl transferase domain SPS_RS00060 PF17862 AAA+ lid domain SPS_RS00060 PF06480 FtsH Extracellular SPS_RS00060 PF01434 Peptidase family M41 SPS_RS00060 PF00004 ATPase family associated with various cellular activities (AAA) SPS_RS00065 PF13520 Amino acid permease SPS_RS00175 PF05257 CHAP domain SPS_RS00175 PF01476 LysM domain SPS_RS00180 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPS_RS00180 PF14572 Phosphoribosyl synthetase-associated domain SPS_RS00185 PF11967 Recombination protein O N terminal SPS_RS00185 PF02565 Recombination protein O C terminal SPS_RS00190 PF02504 Fatty acid synthesis protein SPS_RS00195 PF00550 Phosphopantetheine attachment site SPS_RS00200 PF01259 SAICAR synthetase SPS_RS00205 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SPS_RS00205 PF02769 AIR synthase related protein, C-terminal domain SPS_RS00205 PF00586 AIR synthase related protein, N-terminal domain SPS_RS00210 PF00156 Phosphoribosyl transferase domain SPS_RS00210 PF13537 Glutamine amidotransferase domain SPS_RS00215 PF00586 AIR synthase related protein, N-terminal domain SPS_RS00215 PF02769 AIR synthase related protein, C-terminal domain SPS_RS00220 PF00551 Formyl transferase SPS_RS00225 PF01808 AICARFT/IMPCHase bienzyme SPS_RS00225 PF02142 MGS-like domain SPS_RS00235 PF02843 Phosphoribosylglycinamide synthetase, C domain SPS_RS00235 PF02844 Phosphoribosylglycinamide synthetase, N domain SPS_RS00235 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SPS_RS00240 PF00731 AIR carboxylase SPS_RS00245 PF02222 ATP-grasp domain SPS_RS00245 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SPS_RS00255 PF10397 Adenylosuccinate lyase C-terminus SPS_RS00255 PF00206 Lyase SPS_RS00265 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPS_RS00265 PF05491 RuvB C-terminal winged helix domain SPS_RS00265 PF17864 RuvB AAA lid domain SPS_RS00270 PF01451 Low molecular weight phosphotyrosine protein phosphatase SPS_RS00280 PF01757 Acyltransferase family SPS_RS00285 PF00465 Iron-containing alcohol dehydrogenase SPS_RS00285 PF00171 Aldehyde dehydrogenase family SPS_RS00290 PF00107 Zinc-binding dehydrogenase SPS_RS00290 PF08240 Alcohol dehydrogenase GroES-like domain SPS_RS00295 PF01554 MatE SPS_RS00300 PF00338 Ribosomal protein S10p/S20e SPS_RS00305 PF00297 Ribosomal protein L3 SPS_RS00310 PF00573 Ribosomal protein L4/L1 family SPS_RS00315 PF00276 Ribosomal protein L23 SPS_RS00320 PF00181 Ribosomal Proteins L2, RNA binding domain SPS_RS00320 PF03947 Ribosomal Proteins L2, C-terminal domain SPS_RS00325 PF00203 Ribosomal protein S19 SPS_RS00330 PF00237 Ribosomal protein L22p/L17e SPS_RS00335 PF07650 KH domain SPS_RS00335 PF00189 Ribosomal protein S3, C-terminal domain SPS_RS00340 PF00252 Ribosomal protein L16p/L10e SPS_RS00345 PF00831 Ribosomal L29 protein SPS_RS00350 PF00366 Ribosomal protein S17 SPS_RS00355 PF00238 Ribosomal protein L14p/L23e SPS_RS00360 PF00467 KOW motif SPS_RS00360 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SPS_RS00365 PF00673 ribosomal L5P family C-terminus SPS_RS00365 PF00281 Ribosomal protein L5 SPS_RS00370 PF00253 Ribosomal protein S14p/S29e SPS_RS00375 PF00410 Ribosomal protein S8 SPS_RS00380 PF00347 Ribosomal protein L6 SPS_RS00385 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SPS_RS00390 PF03719 Ribosomal protein S5, C-terminal domain SPS_RS00390 PF00333 Ribosomal protein S5, N-terminal domain SPS_RS00395 PF00327 Ribosomal protein L30p/L7e SPS_RS00400 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SPS_RS00405 PF00344 SecY translocase SPS_RS00415 PF01176 Translation initiation factor 1A / IF-1 SPS_RS00420 PF00416 Ribosomal protein S13/S18 SPS_RS00425 PF00411 Ribosomal protein S11 SPS_RS00430 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SPS_RS00430 PF01000 RNA polymerase Rpb3/RpoA insert domain SPS_RS00430 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SPS_RS00435 PF01196 Ribosomal protein L17 SPS_RS00525 PF00288 GHMP kinases N terminal domain SPS_RS00525 PF08544 GHMP kinases C terminal SPS_RS00530 PF08544 GHMP kinases C terminal SPS_RS00530 PF00288 GHMP kinases N terminal domain SPS_RS00535 PF01047 MarR family SPS_RS00540 PF00005 ABC transporter SPS_RS00545 PF00950 ABC 3 transport family SPS_RS00555 PF01479 S4 domain SPS_RS00555 PF00579 tRNA synthetases class I (W and Y) SPS_RS00560 PF00912 Transglycosylase SPS_RS00560 PF00905 Penicillin binding protein transpeptidase domain SPS_RS00565 PF04561 RNA polymerase Rpb2, domain 2 SPS_RS00565 PF04565 RNA polymerase Rpb2, domain 3 SPS_RS00565 PF10385 RNA polymerase beta subunit external 1 domain SPS_RS00565 PF00562 RNA polymerase Rpb2, domain 6 SPS_RS00565 PF04560 RNA polymerase Rpb2, domain 7 SPS_RS00565 PF04563 RNA polymerase beta subunit SPS_RS00570 PF00623 RNA polymerase Rpb1, domain 2 SPS_RS00570 PF04998 RNA polymerase Rpb1, domain 5 SPS_RS00570 PF04983 RNA polymerase Rpb1, domain 3 SPS_RS00570 PF04997 RNA polymerase Rpb1, domain 1 SPS_RS00570 PF05000 RNA polymerase Rpb1, domain 4 SPS_RS00580 PF00437 Type II/IV secretion system protein SPS_RS00585 PF00482 Type II secretion system (T2SS), protein F SPS_RS00590 PF07963 Prokaryotic N-terminal methylation motif SPS_RS00620 PF00871 Acetokinase family SPS_RS00630 PF03807 NADP oxidoreductase coenzyme F420-dependent SPS_RS00630 PF14748 Pyrroline-5-carboxylate reductase dimerisation SPS_RS00635 PF05343 M42 glutamyl aminopeptidase SPS_RS00645 PF00085 Thioredoxin SPS_RS00650 PF14794 Domain of unknown function (DUF4479) SPS_RS00650 PF01588 Putative tRNA binding domain SPS_RS00655 PF00436 Single-strand binding protein family SPS_RS00665 PF01712 Deoxynucleoside kinase SPS_RS00670 PF01207 Dihydrouridine synthase (Dus) SPS_RS00675 PF01430 Hsp33 protein SPS_RS00685 PF08341 Thioester domain SPS_RS00685 PF17802 Prealbumin-like fold domain SPS_RS00695 PF12892 Spy0128-like isopeptide containing domain SPS_RS00700 PF04203 Sortase domain SPS_RS00715 PF08341 Thioester domain SPS_RS00715 PF17802 Prealbumin-like fold domain SPS_RS00725 PF02667 Short chain fatty acid transporter SPS_RS00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPS_RS00730 PF03466 LysR substrate binding domain SPS_RS00735 PF00108 Thiolase, N-terminal domain SPS_RS00735 PF02803 Thiolase, C-terminal domain SPS_RS00740 PF01144 Coenzyme A transferase SPS_RS00745 PF01144 Coenzyme A transferase SPS_RS00755 PF01042 Endoribonuclease L-PSP SPS_RS00770 PF01496 V-type ATPase 116kDa subunit family SPS_RS00775 PF00137 ATP synthase subunit C SPS_RS00785 PF01992 ATP synthase (C/AC39) subunit SPS_RS00790 PF01990 ATP synthase (F/14-kDa) subunit SPS_RS00795 PF16886 ATPsynthase alpha/beta subunit N-term extension SPS_RS00795 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPS_RS00795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPS_RS00800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPS_RS00800 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPS_RS00805 PF01813 ATP synthase subunit D SPS_RS00820 PF00709 Adenylosuccinate synthetase SPS_RS00825 PF02608 ABC transporter substrate-binding protein PnrA-like SPS_RS00830 PF02357 Transcription termination factor nusG SPS_RS00830 PF00467 KOW motif SPS_RS00845 PF17440 Thiol-activated cytolysin beta sandwich domain SPS_RS00845 PF01289 Thiol-activated cytolysin SPS_RS00860 PF01053 Cys/Met metabolism PLP-dependent enzyme SPS_RS00865 PF13603 Leucyl-tRNA synthetase, Domain 2 SPS_RS00865 PF09334 tRNA synthetases class I (M) SPS_RS00865 PF08264 Anticodon-binding domain of tRNA SPS_RS00865 PF00133 tRNA synthetases class I (I, L, M and V) SPS_RS00870 PF03611 PTS system sugar-specific permease component SPS_RS00875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPS_RS00880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPS_RS00885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPS_RS00890 PF01261 Xylose isomerase-like TIM barrel SPS_RS00895 PF00596 Class II Aldolase and Adducin N-terminal domain SPS_RS00910 PF00005 ABC transporter SPS_RS00910 PF00571 CBS domain SPS_RS00915 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS00920 PF00476 DNA polymerase family A SPS_RS00920 PF01367 5'-3' exonuclease, C-terminal SAM fold SPS_RS00920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SPS_RS00930 PF01475 Ferric uptake regulator family SPS_RS00945 PF01702 Queuine tRNA-ribosyltransferase SPS_RS00950 PF02632 BioY family SPS_RS00955 PF12706 Beta-lactamase superfamily domain SPS_RS00960 PF14437 MafB19-like deaminase SPS_RS00970 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPS_RS00970 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPS_RS00975 PF00342 Phosphoglucose isomerase SPS_RS00990 PF01694 Rhomboid family SPS_RS00995 PF00483 Nucleotidyl transferase SPS_RS01000 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SPS_RS01000 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SPS_RS01010 PF00664 ABC transporter transmembrane region SPS_RS01010 PF00005 ABC transporter SPS_RS01015 PF00664 ABC transporter transmembrane region SPS_RS01015 PF00005 ABC transporter SPS_RS01020 PF02677 Epoxyqueuosine reductase QueH SPS_RS01025 PF00692 dUTPase SPS_RS01030 PF18073 Rubredoxin metal binding domain SPS_RS01035 PF00484 Carbonic anhydrase SPS_RS01040 PF01987 Mitochondrial biogenesis AIM24 SPS_RS01045 PF00749 tRNA synthetases class I (E and Q), catalytic domain SPS_RS01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS01050 PF00989 PAS fold SPS_RS01050 PF17203 Single cache domain 3 SPS_RS01050 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPS_RS01065 PF00825 Ribonuclease P SPS_RS01070 PF02096 60Kd inner membrane protein SPS_RS01075 PF14804 Jag N-terminus SPS_RS01075 PF01424 R3H domain SPS_RS01080 PF00468 Ribosomal protein L34 SPS_RS01085 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SPS_RS01100 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS01105 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS01115 PF00701 Dihydrodipicolinate synthetase family SPS_RS01120 PF00480 ROK family SPS_RS01130 PF01026 TatD related DNase SPS_RS01135 PF13331 Domain of unknown function (DUF4093) SPS_RS01140 PF00398 Ribosomal RNA adenine dimethylase SPS_RS01145 PF03193 RsgA GTPase SPS_RS01145 PF16745 RsgA N-terminal domain SPS_RS01150 PF00834 Ribulose-phosphate 3 epimerase family SPS_RS01155 PF04263 Thiamin pyrophosphokinase, catalytic domain SPS_RS01155 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SPS_RS01160 PF02646 RmuC family SPS_RS01165 PF01966 HD domain SPS_RS01170 PF09182 Bacterial purine repressor, N-terminal SPS_RS01170 PF00156 Phosphoribosyl transferase domain SPS_RS01180 PF00164 Ribosomal protein S12/S23 SPS_RS01185 PF00177 Ribosomal protein S7p/S5e SPS_RS01190 PF03144 Elongation factor Tu domain 2 SPS_RS01190 PF00009 Elongation factor Tu GTP binding domain SPS_RS01190 PF03764 Elongation factor G, domain IV SPS_RS01190 PF14492 Elongation Factor G, domain II SPS_RS01190 PF00679 Elongation factor G C-terminus SPS_RS01195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SPS_RS01195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SPS_RS01200 PF00005 ABC transporter SPS_RS01205 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS01215 PF02673 Bacitracin resistance protein BacA SPS_RS01220 PF05389 Negative regulator of genetic competence (MecA) SPS_RS01225 PF00953 Glycosyl transferase family 4 SPS_RS01230 PF00005 ABC transporter SPS_RS01235 PF01458 Uncharacterized protein family (UPF0051) SPS_RS01240 PF00266 Aminotransferase class-V SPS_RS01245 PF01592 NifU-like N terminal domain SPS_RS01250 PF01458 Uncharacterized protein family (UPF0051) SPS_RS01255 PF00768 D-alanyl-D-alanine carboxypeptidase SPS_RS01255 PF07943 Penicillin-binding protein 5, C-terminal domain SPS_RS01260 PF07943 Penicillin-binding protein 5, C-terminal domain SPS_RS01260 PF00768 D-alanyl-D-alanine carboxypeptidase SPS_RS01265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPS_RS01270 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS01275 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS01275 PF12911 N-terminal TM domain of oligopeptide transport permease C SPS_RS01280 PF00005 ABC transporter SPS_RS01280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPS_RS01285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SPS_RS01285 PF00005 ABC transporter SPS_RS01330 PF01416 tRNA pseudouridine synthase SPS_RS01335 PF08543 Phosphomethylpyrimidine kinase SPS_RS01340 PF07155 ECF-type riboflavin transporter, S component SPS_RS01345 PF04260 Protein of unknown function (DUF436) SPS_RS01350 PF00924 Mechanosensitive ion channel SPS_RS01355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SPS_RS01355 PF05698 Bacterial trigger factor protein (TF) C-terminus SPS_RS01355 PF05697 Bacterial trigger factor protein (TF) SPS_RS01360 PF05066 HB1, ASXL, restriction endonuclease HTH domain SPS_RS01365 PF00117 Glutamine amidotransferase class-I SPS_RS01365 PF06418 CTP synthase N-terminus SPS_RS01380 PF01116 Fructose-bisphosphate aldolase class-II SPS_RS01385 PF00830 Ribosomal L28 family SPS_RS01390 PF03780 Asp23 family, cell envelope-related function SPS_RS01395 PF13684 Dihydroxyacetone kinase family SPS_RS01395 PF02734 DAK2 domain SPS_RS01405 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SPS_RS01410 PF00162 Phosphoglycerate kinase SPS_RS01420 PF13411 MerR HTH family regulatory protein SPS_RS01425 PF03951 Glutamine synthetase, beta-Grasp domain SPS_RS01425 PF00120 Glutamine synthetase, catalytic domain SPS_RS01430 PF17770 Ribonuclease J C-terminal domain SPS_RS01430 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPS_RS01430 PF00753 Metallo-beta-lactamase superfamily SPS_RS01435 PF07288 Protein of unknown function (DUF1447) SPS_RS01440 PF00814 Glycoprotease family SPS_RS01445 PF00583 Acetyltransferase (GNAT) family SPS_RS01450 PF00814 Glycoprotease family SPS_RS01455 PF00253 Ribosomal protein S14p/S29e SPS_RS01465 PF01048 Phosphorylase superfamily SPS_RS01470 PF07670 Nucleoside recognition SPS_RS01470 PF01773 Na+ dependent nucleoside transporter N-terminus SPS_RS01470 PF07662 Na+ dependent nucleoside transporter C-terminus SPS_RS01475 PF01791 DeoC/LacD family aldolase SPS_RS01485 PF08279 HTH domain SPS_RS01485 PF04394 Protein of unknown function, DUF536 SPS_RS01495 PF13411 MerR HTH family regulatory protein SPS_RS01495 PF07739 TipAS antibiotic-recognition domain SPS_RS01500 PF02575 YbaB/EbfC DNA-binding family SPS_RS01515 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SPS_RS01515 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SPS_RS01515 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SPS_RS01520 PF13545 Crp-like helix-turn-helix domain SPS_RS01525 PF07690 Major Facilitator Superfamily SPS_RS01530 PF00230 Major intrinsic protein SPS_RS01545 PF00144 Beta-lactamase SPS_RS01550 PF01228 Glycine radical SPS_RS01550 PF02901 Pyruvate formate lyase-like SPS_RS01555 PF11798 IMS family HHH motif SPS_RS01555 PF11799 impB/mucB/samB family C-terminal domain SPS_RS01555 PF00817 impB/mucB/samB family SPS_RS01565 PF14490 Helix-hairpin-helix containing domain SPS_RS01565 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SPS_RS01565 PF13538 UvrD-like helicase C-terminal domain SPS_RS01570 PF10502 Signal peptidase, peptidase S26 SPS_RS01575 PF01351 Ribonuclease HII SPS_RS01575 PF11858 Domain of unknown function (DUF3378) SPS_RS01590 PF01713 Smr domain SPS_RS01590 PF00488 MutS domain V SPS_RS01600 PF00085 Thioredoxin SPS_RS01605 PF01381 Helix-turn-helix SPS_RS01610 PF00730 HhH-GPD superfamily base excision DNA repair protein SPS_RS01610 PF14815 NUDIX domain SPS_RS01620 PF01250 Ribosomal protein S6 SPS_RS01625 PF00436 Single-strand binding protein family SPS_RS01630 PF01084 Ribosomal protein S18 SPS_RS01645 PF00005 ABC transporter SPS_RS01645 PF17755 UvrA DNA-binding domain SPS_RS01645 PF17760 UvrA interaction domain SPS_RS01650 PF01321 Creatinase/Prolidase N-terminal domain SPS_RS01650 PF00557 Metallopeptidase family M24 SPS_RS01655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPS_RS01660 PF01132 Elongation factor P (EF-P) OB domain SPS_RS01660 PF08207 Elongation factor P (EF-P) KOW-like domain SPS_RS01660 PF09285 Elongation factor P, C-terminal SPS_RS01665 PF03780 Asp23 family, cell envelope-related function SPS_RS01670 PF01029 NusB family SPS_RS01675 PF00356 Bacterial regulatory proteins, lacI family SPS_RS01680 PF08244 Glycosyl hydrolases family 32 C terminal SPS_RS01680 PF00251 Glycosyl hydrolases family 32 N-terminal domain SPS_RS01685 PF02378 Phosphotransferase system, EIIC SPS_RS01685 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPS_RS01685 PF00367 phosphotransferase system, EIIB SPS_RS01695 PF00480 ROK family SPS_RS01700 PF01238 Phosphomannose isomerase type I SPS_RS01705 PF07517 SecA DEAD-like domain SPS_RS01705 PF07516 SecA Wing and Scaffold domain SPS_RS01705 PF02810 SEC-C motif SPS_RS01705 PF01043 SecA preprotein cross-linking domain SPS_RS01710 PF01648 4'-phosphopantetheinyl transferase superfamily SPS_RS01715 PF01168 Alanine racemase, N-terminal domain SPS_RS01715 PF00842 Alanine racemase, C-terminal domain SPS_RS01720 PF05257 CHAP domain SPS_RS01720 PF01476 LysM domain SPS_RS01735 PF01497 Periplasmic binding protein SPS_RS01740 PF01032 FecCD transport family SPS_RS01745 PF00005 ABC transporter SPS_RS01750 PF00005 ABC transporter SPS_RS01750 PF00664 ABC transporter transmembrane region SPS_RS01755 PF00664 ABC transporter transmembrane region SPS_RS01755 PF00005 ABC transporter SPS_RS01770 PF00005 ABC transporter SPS_RS01775 PF17191 RecG wedge domain SPS_RS01775 PF00271 Helicase conserved C-terminal domain SPS_RS01775 PF00270 DEAD/DEAH box helicase SPS_RS01780 PF00005 ABC transporter SPS_RS01790 PF17763 Glutaminase/Asparaginase C-terminal domain SPS_RS01790 PF00710 Asparaginase, N-terminal SPS_RS01805 PF00155 Aminotransferase class I and II SPS_RS01810 PF06018 CodY GAF-like domain SPS_RS01810 PF08222 CodY helix-turn-helix domain SPS_RS01815 PF00857 Isochorismatase family SPS_RS01825 PF02686 Glu-tRNAGln amidotransferase C subunit SPS_RS01830 PF01425 Amidase SPS_RS01835 PF02637 GatB domain SPS_RS01835 PF02934 GatB/GatE catalytic domain SPS_RS01845 PF04226 Transglycosylase associated protein SPS_RS01850 PF00300 Histidine phosphatase superfamily (branch 1) SPS_RS01865 PF01628 HrcA protein C terminal domain SPS_RS01865 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SPS_RS01870 PF01025 GrpE SPS_RS01875 PF00012 Hsp70 protein SPS_RS01880 PF00226 DnaJ domain SPS_RS01880 PF00684 DnaJ central domain SPS_RS01880 PF01556 DnaJ C terminal domain SPS_RS01885 PF00378 Enoyl-CoA hydratase/isomerase SPS_RS01895 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SPS_RS01895 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SPS_RS01900 PF00550 Phosphopantetheine attachment site SPS_RS01905 PF03060 Nitronate monooxygenase SPS_RS01910 PF00698 Acyl transferase domain SPS_RS01920 PF00109 Beta-ketoacyl synthase, N-terminal domain SPS_RS01920 PF02801 Beta-ketoacyl synthase, C-terminal domain SPS_RS01925 PF00364 Biotin-requiring enzyme SPS_RS01930 PF07977 FabA-like domain SPS_RS01935 PF00289 Biotin carboxylase, N-terminal domain SPS_RS01935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPS_RS01935 PF02785 Biotin carboxylase C-terminal domain SPS_RS01940 PF17848 Acetyl-coA carboxylase zinc finger domain SPS_RS01940 PF01039 Carboxyl transferase domain SPS_RS01945 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SPS_RS01950 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPS_RS01950 PF02403 Seryl-tRNA synthetase N-terminal domain SPS_RS01960 PF13808 DDE_Tnp_1-associated SPS_RS01960 PF01609 Transposase DDE domain SPS_RS01970 PF03613 PTS system mannose/fructose/sorbose family IID component SPS_RS01975 PF03609 PTS system sorbose-specific iic component SPS_RS01980 PF03610 PTS system fructose IIA component SPS_RS01980 PF03830 PTS system sorbose subfamily IIB component SPS_RS01990 PF00860 Permease family SPS_RS01995 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SPS_RS02005 PF03816 Cell envelope-related transcriptional attenuator domain SPS_RS02015 PF01230 HIT domain SPS_RS02020 PF00005 ABC transporter SPS_RS02025 PF05975 Bacterial ABC transporter protein EcsB SPS_RS02035 PF02390 Putative methyltransferase SPS_RS02045 PF17384 RimP C-terminal SH3 domain SPS_RS02045 PF02576 RimP N-terminal domain SPS_RS02050 PF00575 S1 RNA binding domain SPS_RS02050 PF08529 NusA N-terminal domain SPS_RS02050 PF13184 NusA-like KH domain SPS_RS02055 PF04296 Protein of unknown function (DUF448) SPS_RS02060 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SPS_RS02065 PF11987 Translation-initiation factor 2 SPS_RS02065 PF00009 Elongation factor Tu GTP binding domain SPS_RS02065 PF04760 Translation initiation factor IF-2, N-terminal region SPS_RS02070 PF02033 Ribosome-binding factor A SPS_RS02075 PF07859 alpha/beta hydrolase fold SPS_RS02080 PF03965 Penicillinase repressor SPS_RS02085 PF00403 Heavy-metal-associated domain SPS_RS02095 PF08220 DeoR-like helix-turn-helix domain SPS_RS02095 PF00455 DeoR C terminal sensor domain SPS_RS02115 PF02502 Ribose/Galactose Isomerase SPS_RS02120 PF02502 Ribose/Galactose Isomerase SPS_RS02125 PF00294 pfkB family carbohydrate kinase SPS_RS02130 PF01791 DeoC/LacD family aldolase SPS_RS02135 PF03458 UPF0126 domain SPS_RS02145 PF00440 Bacterial regulatory proteins, tetR family SPS_RS02150 PF02645 Uncharacterised protein, DegV family COG1307 SPS_RS02160 PF02690 Na+/Pi-cotransporter SPS_RS02165 PF01979 Amidohydrolase family SPS_RS02170 PF00248 Aldo/keto reductase family SPS_RS02175 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SPS_RS02180 PF02091 Glycyl-tRNA synthetase alpha subunit SPS_RS02185 PF02092 Glycyl-tRNA synthetase beta subunit SPS_RS02190 PF05979 Bacterial protein of unknown function (DUF896) SPS_RS02195 PF03413 Peptidase propeptide and YPEB domain SPS_RS02200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SPS_RS02200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SPS_RS02205 PF01266 FAD dependent oxidoreductase SPS_RS02205 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SPS_RS02210 PF00230 Major intrinsic protein SPS_RS02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPS_RS02215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPS_RS02225 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPS_RS02230 PF02779 Transketolase, pyrimidine binding domain SPS_RS02230 PF02780 Transketolase, C-terminal domain SPS_RS02230 PF00456 Transketolase, thiamine diphosphate binding domain SPS_RS02240 PF00005 ABC transporter SPS_RS02350 PF17288 Terminase RNAseH like domain SPS_RS02350 PF04466 Phage terminase large subunit SPS_RS02470 PF08460 Bacterial SH3 domain SPS_RS02470 PF05257 CHAP domain SPS_RS02470 PF01520 N-acetylmuramoyl-L-alanine amidase SPS_RS02490 PF00696 Amino acid kinase family SPS_RS02495 PF00171 Aldehyde dehydrogenase family SPS_RS02505 PF01795 MraW methylase family SPS_RS02515 PF03793 PASTA domain SPS_RS02515 PF03717 Penicillin-binding Protein dimerisation domain SPS_RS02515 PF00905 Penicillin binding protein transpeptidase domain SPS_RS02520 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SPS_RS02520 PF00953 Glycosyl transferase family 4 SPS_RS02525 PF00270 DEAD/DEAH box helicase SPS_RS02525 PF00271 Helicase conserved C-terminal domain SPS_RS02530 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS02535 PF00005 ABC transporter SPS_RS02545 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPS_RS02550 PF00324 Amino acid permease SPS_RS02555 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SPS_RS02555 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SPS_RS02555 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SPS_RS02560 PF02540 NAD synthase SPS_RS02565 PF03051 Peptidase C1-like family SPS_RS02570 PF00905 Penicillin binding protein transpeptidase domain SPS_RS02570 PF00912 Transglycosylase SPS_RS02575 PF03838 Recombination protein U SPS_RS02580 PF06908 YspA SLOG family SPS_RS02585 PF05103 DivIVA protein SPS_RS02590 PF01170 Putative RNA methylase family UPF0020 SPS_RS02590 PF02926 THUMP domain SPS_RS02595 PF18041 MapZ extracellular domain 1 SPS_RS02595 PF18708 MapZ extracellular C-terminal domain 2 SPS_RS02600 PF02664 S-Ribosylhomocysteinase (LuxS) SPS_RS02615 PF01144 Coenzyme A transferase SPS_RS02620 PF01144 Coenzyme A transferase SPS_RS02625 PF02803 Thiolase, C-terminal domain SPS_RS02625 PF00108 Thiolase, N-terminal domain SPS_RS02630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPS_RS02630 PF03466 LysR substrate binding domain SPS_RS02635 PF12072 Domain of unknown function (DUF3552) SPS_RS02635 PF00013 KH domain SPS_RS02635 PF01966 HD domain SPS_RS02640 PF00625 Guanylate kinase SPS_RS02645 PF01192 RNA polymerase Rpb6 SPS_RS02650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SPS_RS02650 PF00271 Helicase conserved C-terminal domain SPS_RS02650 PF17764 3′ DNA-binding domain (3′BD) SPS_RS02650 PF18074 Primosomal protein N C-terminal domain SPS_RS02650 PF04851 Type III restriction enzyme, res subunit SPS_RS02655 PF02911 Formyl transferase, C-terminal domain SPS_RS02655 PF00551 Formyl transferase SPS_RS02660 PF01189 16S rRNA methyltransferase RsmB/F SPS_RS02660 PF01029 NusB family SPS_RS02670 PF03793 PASTA domain SPS_RS02670 PF00069 Protein kinase domain SPS_RS02680 PF00672 HAMP domain SPS_RS02680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS02680 PF07730 Histidine kinase SPS_RS02685 PF00196 Bacterial regulatory proteins, luxR family SPS_RS02685 PF00072 Response regulator receiver domain SPS_RS02690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPS_RS02695 PF00575 S1 RNA binding domain SPS_RS02700 PF00291 Pyridoxal-phosphate dependent enzyme SPS_RS02705 PF01205 Uncharacterized protein family UPF0029 SPS_RS02705 PF09186 Domain of unknown function (DUF1949) SPS_RS02720 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SPS_RS02720 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SPS_RS02780 PF04167 Protein of unknown function (DUF402) SPS_RS02785 PF02631 RecX family SPS_RS02790 PF00589 Phage integrase family SPS_RS02790 PF02899 Phage integrase, N-terminal SAM-like domain SPS_RS03060 PF01123 Staphylococcal/Streptococcal toxin, OB-fold domain SPS_RS03060 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPS_RS03070 PF01938 TRAM domain SPS_RS03070 PF05958 tRNA (Uracil-5-)-methyltransferase SPS_RS03080 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain SPS_RS03080 PF07748 Glycosyl hydrolases family 38 C-terminal domain SPS_RS03080 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 SPS_RS03080 PF09261 Alpha mannosidase middle domain SPS_RS03080 PF01074 Glycosyl hydrolases family 38 N-terminal domain SPS_RS03090 PF00392 Bacterial regulatory proteins, gntR family SPS_RS03095 PF07555 beta-N-acetylglucosaminidase SPS_RS03095 PF02838 Glycosyl hydrolase family 20, domain 2 SPS_RS03100 PF00232 Glycosyl hydrolase family 1 SPS_RS03105 PF00480 ROK family SPS_RS03110 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS03115 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS03120 PF12010 Domain of unknown function (DUF3502) SPS_RS03130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS03130 PF00672 HAMP domain SPS_RS03130 PF02743 Cache domain SPS_RS03130 PF06580 Histidine kinase SPS_RS03135 PF00072 Response regulator receiver domain SPS_RS03135 PF12833 Helix-turn-helix domain SPS_RS03140 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SPS_RS03140 PF00703 Glycosyl hydrolases family 2 SPS_RS03140 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SPS_RS03140 PF16355 Domain of unknown function (DUF4982) SPS_RS03140 PF02837 Glycosyl hydrolases family 2, sugar binding domain SPS_RS03145 PF08501 Shikimate dehydrogenase substrate binding domain SPS_RS03145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPS_RS03150 PF13649 Methyltransferase domain SPS_RS03165 PF01761 3-dehydroquinate synthase SPS_RS03170 PF00793 DAHP synthetase I family SPS_RS03170 PF01817 Chorismate mutase type II SPS_RS03200 PF10458 Valyl tRNA synthetase tRNA binding arm SPS_RS03200 PF00133 tRNA synthetases class I (I, L, M and V) SPS_RS03200 PF08264 Anticodon-binding domain of tRNA SPS_RS03210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPS_RS03210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPS_RS03220 PF02683 Cytochrome C biogenesis protein transmembrane region SPS_RS03225 PF08534 Redoxin SPS_RS03230 PF01625 Peptide methionine sulfoxide reductase SPS_RS03230 PF01641 SelR domain SPS_RS03250 PF01381 Helix-turn-helix SPS_RS03260 PF08346 AntA/AntB antirepressor SPS_RS03260 PF10548 P22AR C-terminal domain SPS_RS03285 PF07261 Replication initiation and membrane attachment SPS_RS03310 PF00436 Single-strand binding protein family SPS_RS03320 PF05866 Endodeoxyribonuclease RusA SPS_RS03360 PF02195 ParB-like nuclease domain SPS_RS03505 PF01520 N-acetylmuramoyl-L-alanine amidase SPS_RS03505 PF08460 Bacterial SH3 domain SPS_RS03505 PF05257 CHAP domain SPS_RS03520 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPS_RS03540 PF00072 Response regulator receiver domain SPS_RS03540 PF12833 Helix-turn-helix domain SPS_RS03545 PF06580 Histidine kinase SPS_RS03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS03545 PF02743 Cache domain SPS_RS03545 PF00672 HAMP domain SPS_RS03560 PF02863 Arginine repressor, C-terminal domain SPS_RS03560 PF01316 Arginine repressor, DNA binding domain SPS_RS03575 PF13673 Acetyltransferase (GNAT) domain SPS_RS03580 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPS_RS03580 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPS_RS03585 PF03606 C4-dicarboxylate anaerobic carrier SPS_RS03590 PF01546 Peptidase family M20/M25/M40 SPS_RS03595 PF00696 Amino acid kinase family SPS_RS03600 PF03590 Aspartate-ammonia ligase SPS_RS03610 PF01467 Cytidylyltransferase-like SPS_RS03615 PF05362 Lon protease (S16) C-terminal proteolytic domain SPS_RS03615 PF13180 PDZ domain SPS_RS03620 PF00356 Bacterial regulatory proteins, lacI family SPS_RS03625 PF06265 Protein of unknown function (DUF1027) SPS_RS03630 PF04055 Radical SAM superfamily SPS_RS03640 PF00210 Ferritin-like domain SPS_RS03650 PF00480 ROK family SPS_RS03655 PF00581 Rhodanese-like domain SPS_RS03660 PF03144 Elongation factor Tu domain 2 SPS_RS03660 PF00009 Elongation factor Tu GTP binding domain SPS_RS03660 PF14492 Elongation Factor G, domain II SPS_RS03660 PF00679 Elongation factor G C-terminus SPS_RS03670 PF02875 Mur ligase family, glutamate ligase domain SPS_RS03670 PF08245 Mur ligase middle domain SPS_RS03675 PF03033 Glycosyltransferase family 28 N-terminal domain SPS_RS03675 PF04101 Glycosyltransferase family 28 C-terminal domain SPS_RS03680 PF08478 POTRA domain, FtsQ-type SPS_RS03685 PF11983 Membrane-attachment and polymerisation-promoting switch SPS_RS03685 PF02491 SHS2 domain inserted in FTSA SPS_RS03690 PF00091 Tubulin/FtsZ family, GTPase domain SPS_RS03690 PF12327 FtsZ family, C-terminal domain SPS_RS03695 PF01168 Alanine racemase, N-terminal domain SPS_RS03700 PF04472 Cell division protein SepF SPS_RS03710 PF01479 S4 domain SPS_RS03710 PF17774 Putative RNA-binding domain in YlmH SPS_RS03715 PF05103 DivIVA protein SPS_RS03720 PF08264 Anticodon-binding domain of tRNA SPS_RS03720 PF00133 tRNA synthetases class I (I, L, M and V) SPS_RS03730 PF00293 NUDIX domain SPS_RS03735 PF17871 AAA lid domain SPS_RS03735 PF10431 C-terminal, D2-small domain, of ClpB protein SPS_RS03735 PF00004 ATPase family associated with various cellular activities (AAA) SPS_RS03735 PF07724 AAA domain (Cdc48 subfamily) SPS_RS03740 PF08796 Protein of unknown function (DUF1797) SPS_RS03745 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS03750 PF00005 ABC transporter SPS_RS03755 PF03441 FAD binding domain of DNA photolyase SPS_RS03755 PF00875 DNA photolyase SPS_RS03760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPS_RS03760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPS_RS03760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPS_RS03760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPS_RS03765 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SPS_RS03765 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SPS_RS03770 PF02601 Exonuclease VII, large subunit SPS_RS03770 PF13742 OB-fold nucleic acid binding domain SPS_RS03775 PF02609 Exonuclease VII small subunit SPS_RS03780 PF00348 Polyprenyl synthetase SPS_RS03785 PF01479 S4 domain SPS_RS03785 PF01728 FtsJ-like methyltransferase SPS_RS03790 PF01316 Arginine repressor, DNA binding domain SPS_RS03790 PF02863 Arginine repressor, C-terminal domain SPS_RS03795 PF13476 AAA domain SPS_RS03805 PF02645 Uncharacterised protein, DegV family COG1307 SPS_RS03810 PF13472 GDSL-like Lipase/Acylhydrolase family SPS_RS03820 PF00216 Bacterial DNA-binding protein SPS_RS03825 PF00589 Phage integrase family SPS_RS03825 PF14659 Phage integrase, N-terminal SAM-like domain SPS_RS03835 PF01381 Helix-turn-helix SPS_RS03880 PF03837 RecT family SPS_RS03900 PF14284 PcfJ-like protein SPS_RS04055 PF05105 Bacteriophage holin family SPS_RS04085 PF01180 Dihydroorotate dehydrogenase SPS_RS04090 PF00300 Histidine phosphatase superfamily (branch 1) SPS_RS04095 PF08279 HTH domain SPS_RS04095 PF02829 3H domain SPS_RS04105 PF01226 Formate/nitrite transporter SPS_RS04110 PF03717 Penicillin-binding Protein dimerisation domain SPS_RS04110 PF00905 Penicillin binding protein transpeptidase domain SPS_RS04115 PF02132 RecR protein SPS_RS04115 PF13662 Toprim domain SPS_RS04120 PF07478 D-ala D-ala ligase C-terminus SPS_RS04120 PF01820 D-ala D-ala ligase N-terminus SPS_RS04125 PF02875 Mur ligase family, glutamate ligase domain SPS_RS04125 PF08245 Mur ligase middle domain SPS_RS04125 PF01225 Mur ligase family, catalytic domain SPS_RS04135 PF16658 Class II release factor RF3, C-terminal domain SPS_RS04135 PF03144 Elongation factor Tu domain 2 SPS_RS04135 PF00009 Elongation factor Tu GTP binding domain SPS_RS04140 PF00270 DEAD/DEAH box helicase SPS_RS04140 PF00271 Helicase conserved C-terminal domain SPS_RS04145 PF02705 K+ potassium transporter SPS_RS04150 PF01541 GIY-YIG catalytic domain SPS_RS04155 PF05175 Methyltransferase small domain SPS_RS04155 PF17827 PrmC N-terminal domain SPS_RS04160 PF01553 Acyltransferase SPS_RS04165 PF10531 SLBB domain SPS_RS04170 PF00753 Metallo-beta-lactamase superfamily SPS_RS04170 PF13567 Domain of unknown function (DUF4131) SPS_RS04170 PF03772 Competence protein SPS_RS04180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SPS_RS04180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SPS_RS04205 PF02547 Queuosine biosynthesis protein SPS_RS04210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SPS_RS04215 PF00849 RNA pseudouridylate synthase SPS_RS04215 PF01479 S4 domain SPS_RS04225 PF08439 Oligopeptidase F SPS_RS04225 PF01432 Peptidase family M3 SPS_RS04230 PF07690 Major Facilitator Superfamily SPS_RS04235 PF01596 O-methyltransferase SPS_RS04240 PF13145 PPIC-type PPIASE domain SPS_RS04245 PF01411 tRNA synthetases class II (A) SPS_RS04245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPS_RS04245 PF02272 DHHA1 domain SPS_RS04250 PF01381 Helix-turn-helix SPS_RS04265 PF13276 HTH-like domain SPS_RS04265 PF00665 Integrase core domain SPS_RS04265 PF13333 Integrase core domain SPS_RS04270 PF00665 Integrase core domain SPS_RS04270 PF13276 HTH-like domain SPS_RS04270 PF13333 Integrase core domain SPS_RS04285 PF00268 Ribonucleotide reductase, small chain SPS_RS04290 PF02867 Ribonucleotide reductase, barrel domain SPS_RS04290 PF08343 Ribonucleotide reductase N-terminal SPS_RS04290 PF00317 Ribonucleotide reductase, all-alpha domain SPS_RS04295 PF00462 Glutaredoxin SPS_RS04300 PF00381 PTS HPr component phosphorylation site SPS_RS04305 PF00391 PEP-utilising enzyme, mobile domain SPS_RS04305 PF02896 PEP-utilising enzyme, TIM barrel domain SPS_RS04305 PF05524 PEP-utilising enzyme, N-terminal SPS_RS04310 PF00171 Aldehyde dehydrogenase family SPS_RS04315 PF01522 Polysaccharide deacetylase SPS_RS04315 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SPS_RS04320 PF00271 Helicase conserved C-terminal domain SPS_RS04320 PF00270 DEAD/DEAH box helicase SPS_RS04325 PF00485 Phosphoribulokinase / Uridine kinase family SPS_RS04340 PF13185 GAF domain SPS_RS04345 PF12169 DNA polymerase III subunits gamma and tau domain III SPS_RS04350 PF08279 HTH domain SPS_RS04350 PF03099 Biotin/lipoate A/B protein ligase family SPS_RS04350 PF02237 Biotin protein ligase C terminal domain SPS_RS04360 PF02773 S-adenosylmethionine synthetase, C-terminal domain SPS_RS04360 PF02772 S-adenosylmethionine synthetase, central domain SPS_RS04360 PF00438 S-adenosylmethionine synthetase, N-terminal domain SPS_RS04365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPS_RS04370 PF17573 GA-like domain SPS_RS04370 PF01378 B domain SPS_RS04370 PF00746 LPXTG cell wall anchor motif SPS_RS04370 PF17573 GA-like domain SPS_RS04370 PF01378 B domain SPS_RS04370 PF00746 LPXTG cell wall anchor motif SPS_RS04380 PF00392 Bacterial regulatory proteins, gntR family SPS_RS04380 PF07085 DRTGG domain SPS_RS04380 PF00571 CBS domain SPS_RS04380 PF03061 Thioesterase superfamily SPS_RS04385 PF00557 Metallopeptidase family M24 SPS_RS04395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPS_RS04400 PF01202 Shikimate kinase SPS_RS04405 PF03816 Cell envelope-related transcriptional attenuator domain SPS_RS04410 PF01938 TRAM domain SPS_RS04410 PF05958 tRNA (Uracil-5-)-methyltransferase SPS_RS04425 PF08903 Domain of unknown function (DUF1846) SPS_RS04430 PF07690 Major Facilitator Superfamily SPS_RS04440 PF00849 RNA pseudouridylate synthase SPS_RS04440 PF01479 S4 domain SPS_RS04450 PF13276 HTH-like domain SPS_RS04450 PF00665 Integrase core domain SPS_RS04450 PF13333 Integrase core domain SPS_RS04465 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SPS_RS04465 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SPS_RS04470 PF00665 Integrase core domain SPS_RS04470 PF13276 HTH-like domain SPS_RS04470 PF13333 Integrase core domain SPS_RS04480 PF01018 GTP1/OBG SPS_RS04480 PF09269 Domain of unknown function (DUF1967) SPS_RS04480 PF01926 50S ribosome-binding GTPase SPS_RS04495 PF00232 Glycosyl hydrolase family 1 SPS_RS04505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPS_RS04505 PF00874 PRD domain SPS_RS04505 PF05043 Mga helix-turn-helix domain SPS_RS04505 PF08279 HTH domain SPS_RS04510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPS_RS04515 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPS_RS04525 PF02378 Phosphotransferase system, EIIC SPS_RS04530 PF00005 ABC transporter SPS_RS04535 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPS_RS04540 PF17757 UvrB interaction domain SPS_RS04540 PF12344 Ultra-violet resistance protein B SPS_RS04540 PF02151 UvrB/uvrC motif SPS_RS04540 PF04851 Type III restriction enzyme, res subunit SPS_RS04540 PF00271 Helicase conserved C-terminal domain SPS_RS04550 PF13193 AMP-binding enzyme C-terminal domain SPS_RS04550 PF00501 AMP-binding enzyme SPS_RS04555 PF03062 MBOAT, membrane-bound O-acyltransferase family SPS_RS04560 PF00550 Phosphopantetheine attachment site SPS_RS04565 PF04914 DltD protein SPS_RS04570 PF00934 PE family SPS_RS04570 PF07859 alpha/beta hydrolase fold SPS_RS04585 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS04590 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS04595 PF13416 Bacterial extracellular solute-binding protein SPS_RS04600 PF00356 Bacterial regulatory proteins, lacI family SPS_RS04600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SPS_RS04605 PF02446 4-alpha-glucanotransferase SPS_RS04610 PF00343 Carbohydrate phosphorylase SPS_RS04795 PF00574 Clp protease SPS_RS04890 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPS_RS04890 PF13457 GW (Gly-Tryp) dipeptide domain SPS_RS04920 PF00334 Nucleoside diphosphate kinase SPS_RS04925 PF00009 Elongation factor Tu GTP binding domain SPS_RS04925 PF03144 Elongation factor Tu domain 2 SPS_RS04925 PF14492 Elongation Factor G, domain II SPS_RS04925 PF00679 Elongation factor G C-terminus SPS_RS04925 PF06421 GTP-binding protein LepA C-terminus SPS_RS04930 PF02370 M protein repeat SPS_RS04930 PF00746 LPXTG cell wall anchor motif SPS_RS04935 PF01641 SelR domain SPS_RS04940 PF03601 Conserved hypothetical protein 698 SPS_RS04950 PF03830 PTS system sorbose subfamily IIB component SPS_RS04955 PF03609 PTS system sorbose-specific iic component SPS_RS04960 PF03613 PTS system mannose/fructose/sorbose family IID component SPS_RS04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS04965 PF06580 Histidine kinase SPS_RS04970 PF12833 Helix-turn-helix domain SPS_RS04970 PF00072 Response regulator receiver domain SPS_RS04980 PF00171 Aldehyde dehydrogenase family SPS_RS04985 PF08459 UvrC Helix-hairpin-helix N-terminal SPS_RS04985 PF01541 GIY-YIG catalytic domain SPS_RS04985 PF02151 UvrB/uvrC motif SPS_RS04990 PF00881 Nitroreductase family SPS_RS04995 PF01546 Peptidase family M20/M25/M40 SPS_RS05000 PF10396 GTP-binding protein TrmE N-terminus SPS_RS05000 PF01926 50S ribosome-binding GTPase SPS_RS05000 PF12631 MnmE helical domain SPS_RS05005 PF00466 Ribosomal protein L10 SPS_RS05010 PF16320 Ribosomal protein L7/L12 dimerisation domain SPS_RS05010 PF00542 Ribosomal protein L7/L12 C-terminal domain SPS_RS05015 PF00768 D-alanyl-D-alanine carboxypeptidase SPS_RS05015 PF07943 Penicillin-binding protein 5, C-terminal domain SPS_RS05025 PF02875 Mur ligase family, glutamate ligase domain SPS_RS05025 PF08245 Mur ligase middle domain SPS_RS05030 PF01227 GTP cyclohydrolase I SPS_RS05035 PF00809 Pterin binding enzyme SPS_RS05040 PF02152 Dihydroneopterin aldolase SPS_RS05045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SPS_RS05050 PF01565 FAD binding domain SPS_RS05050 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SPS_RS05055 PF00005 ABC transporter SPS_RS05055 PF08402 TOBE domain SPS_RS05060 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS05065 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS05070 PF13416 Bacterial extracellular solute-binding protein SPS_RS05075 PF00072 Response regulator receiver domain SPS_RS05080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS05080 PF00989 PAS fold SPS_RS05080 PF17203 Single cache domain 3 SPS_RS05080 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SPS_RS05085 PF03390 2-hydroxycarboxylate transporter family SPS_RS05090 PF00390 Malic enzyme, N-terminal domain SPS_RS05090 PF03949 Malic enzyme, NAD binding domain SPS_RS05095 PF08240 Alcohol dehydrogenase GroES-like domain SPS_RS05095 PF13823 Alcohol dehydrogenase GroES-associated SPS_RS05095 PF00107 Zinc-binding dehydrogenase SPS_RS05100 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SPS_RS05105 PF00654 Voltage gated chloride channel SPS_RS05115 PF01594 AI-2E family transporter SPS_RS05120 PF04002 RadC-like JAB domain SPS_RS05125 PF07722 Peptidase C26 SPS_RS05130 PF02629 CoA binding domain SPS_RS05130 PF06971 Putative DNA-binding protein N-terminus SPS_RS05140 PF00266 Aminotransferase class-V SPS_RS05145 PF14572 Phosphoribosyl synthetase-associated domain SPS_RS05145 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SPS_RS05155 PF04607 Region found in RelA / SpoT proteins SPS_RS05160 PF01513 ATP-NAD kinase SPS_RS05165 PF00849 RNA pseudouridylate synthase SPS_RS05165 PF01479 S4 domain SPS_RS05170 PF01515 Phosphate acetyl/butaryl transferase SPS_RS05185 PF00005 ABC transporter SPS_RS05185 PF00571 CBS domain SPS_RS05190 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS05195 PF00478 IMP dehydrogenase / GMP reductase domain SPS_RS05200 PF00156 Phosphoribosyl transferase domain SPS_RS05205 PF00860 Permease family SPS_RS05210 PF02424 ApbE family SPS_RS05215 PF01361 Tautomerase enzyme SPS_RS05220 PF00265 Thymidine kinase SPS_RS05225 PF00472 RF-1 domain SPS_RS05225 PF03462 PCRF domain SPS_RS05230 PF05175 Methyltransferase small domain SPS_RS05245 PF00464 Serine hydroxymethyltransferase SPS_RS05260 PF00664 ABC transporter transmembrane region SPS_RS05260 PF00005 ABC transporter SPS_RS05265 PF00005 ABC transporter SPS_RS05265 PF00664 ABC transporter transmembrane region SPS_RS05270 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPS_RS05270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPS_RS05275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SPS_RS05275 PF00056 lactate/malate dehydrogenase, NAD binding domain SPS_RS05280 PF03989 DNA gyrase C-terminal domain, beta-propeller SPS_RS05280 PF00521 DNA gyrase/topoisomerase IV, subunit A SPS_RS05285 PF04203 Sortase domain SPS_RS05290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPS_RS05305 PF03006 Haemolysin-III related SPS_RS05315 PF01926 50S ribosome-binding GTPase SPS_RS05320 PF01351 Ribonuclease HII SPS_RS05325 PF18255 DNA processing protein A sterile alpha motif domain SPS_RS05325 PF02481 DNA recombination-mediator protein A SPS_RS05330 PF01396 Topoisomerase DNA binding C4 zinc finger SPS_RS05330 PF01751 Toprim domain SPS_RS05330 PF01131 DNA topoisomerase SPS_RS05335 PF01134 Glucose inhibited division protein A SPS_RS05340 PF00682 HMGL-like SPS_RS05340 PF02436 Conserved carboxylase domain SPS_RS05340 PF00364 Biotin-requiring enzyme SPS_RS05350 PF00364 Biotin-requiring enzyme SPS_RS05355 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SPS_RS05360 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SPS_RS05370 PF03600 Citrate transporter SPS_RS05380 PF00364 Biotin-requiring enzyme SPS_RS05385 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SPS_RS05395 PF06857 Malonate decarboxylase delta subunit (MdcD) SPS_RS05400 PF03328 HpcH/HpaI aldolase/citrate lyase family SPS_RS05405 PF04223 Citrate lyase, alpha subunit (CitF) SPS_RS05410 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SPS_RS05415 PF00682 HMGL-like SPS_RS05415 PF00364 Biotin-requiring enzyme SPS_RS05415 PF02436 Conserved carboxylase domain SPS_RS05420 PF08218 Citrate lyase ligase C-terminal domain SPS_RS05430 PF00589 Phage integrase family SPS_RS05430 PF13495 Phage integrase, N-terminal SAM-like domain SPS_RS05440 PF00448 SRP54-type protein, GTPase domain SPS_RS05440 PF02881 SRP54-type protein, helical bundle domain SPS_RS05440 PF02978 Signal peptide binding domain SPS_RS05445 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SPS_RS05450 PF00392 Bacterial regulatory proteins, gntR family SPS_RS05450 PF07702 UTRA domain SPS_RS05460 PF00117 Glutamine amidotransferase class-I SPS_RS05460 PF00958 GMP synthase C terminal domain SPS_RS05460 PF02540 NAD synthase SPS_RS05470 PF00005 ABC transporter SPS_RS05470 PF12848 ABC transporter SPS_RS05480 PF02581 Thiamine monophosphate synthase SPS_RS05480 PF08543 Phosphomethylpyrimidine kinase SPS_RS05485 PF00155 Aminotransferase class I and II SPS_RS05485 PF00392 Bacterial regulatory proteins, gntR family SPS_RS05490 PF03477 ATP cone domain SPS_RS05490 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPS_RS05495 PF13091 PLD-like domain SPS_RS05500 PF01268 Formate--tetrahydrofolate ligase SPS_RS05505 PF03099 Biotin/lipoate A/B protein ligase family SPS_RS05505 PF10437 Bacterial lipoate protein ligase C-terminus SPS_RS05515 PF01661 Macro domain SPS_RS05520 PF01597 Glycine cleavage H-protein SPS_RS05525 PF00296 Luciferase-like monooxygenase SPS_RS05530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SPS_RS05535 PF03099 Biotin/lipoate A/B protein ligase family SPS_RS05540 PF02441 Flavoprotein SPS_RS05540 PF04127 DNA / pantothenate metabolism flavoprotein SPS_RS05545 PF02441 Flavoprotein SPS_RS05550 PF12822 ECF transporter, substrate-specific component SPS_RS05555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPS_RS05555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPS_RS05555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPS_RS05555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPS_RS05560 PF02653 Branched-chain amino acid transport system / permease component SPS_RS05565 PF02653 Branched-chain amino acid transport system / permease component SPS_RS05570 PF00005 ABC transporter SPS_RS05575 PF02608 ABC transporter substrate-binding protein PnrA-like SPS_RS05580 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SPS_RS05585 PF05175 Methyltransferase small domain SPS_RS05590 PF00485 Phosphoribulokinase / Uridine kinase family SPS_RS05595 PF01649 Ribosomal protein S20 SPS_RS05600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS05600 PF00512 His Kinase A (phospho-acceptor) domain SPS_RS05605 PF00072 Response regulator receiver domain SPS_RS05605 PF00486 Transcriptional regulatory protein, C terminal SPS_RS05610 PF01433 Peptidase family M1 domain SPS_RS05610 PF11838 ERAP1-like C-terminal domain SPS_RS05615 PF01895 PhoU domain SPS_RS05620 PF00005 ABC transporter SPS_RS05625 PF00005 ABC transporter SPS_RS05630 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS05635 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS05640 PF12849 PBP superfamily domain SPS_RS05645 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SPS_RS05645 PF17126 RsmF rRNA methyltransferase first C-terminal domain SPS_RS05645 PF01189 16S rRNA methyltransferase RsmB/F SPS_RS05650 PF00459 Inositol monophosphatase family SPS_RS05655 PF05256 Uncharacterised protein family (UPF0223) SPS_RS05660 PF03960 ArsC family SPS_RS05665 PF06574 FAD synthetase SPS_RS05665 PF01687 Riboflavin kinase SPS_RS05670 PF16198 tRNA pseudouridylate synthase B C-terminal domain SPS_RS05670 PF01509 TruB family pseudouridylate synthase (N terminal domain) SPS_RS05695 PF00005 ABC transporter SPS_RS05695 PF02687 FtsX-like permease family SPS_RS05695 PF12704 MacB-like periplasmic core domain SPS_RS05710 PF03780 Asp23 family, cell envelope-related function SPS_RS05715 PF05532 CsbD-like SPS_RS05720 PF03780 Asp23 family, cell envelope-related function SPS_RS05740 PF00580 UvrD/REP helicase N-terminal domain SPS_RS05740 PF13361 UvrD-like helicase C-terminal domain SPS_RS05745 PF01235 Sodium:alanine symporter family SPS_RS05750 PF01545 Cation efflux family SPS_RS05750 PF16916 Dimerisation domain of Zinc Transporter SPS_RS05755 PF07373 CAMP factor (Cfa) SPS_RS05760 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPS_RS05765 PF00005 ABC transporter SPS_RS05770 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS05775 PF03831 PhnA domain SPS_RS05775 PF08274 PhnA Zinc-Ribbon SPS_RS05780 PF01380 SIS domain SPS_RS05785 PF10502 Signal peptidase, peptidase S26 SPS_RS05790 PF00224 Pyruvate kinase, barrel domain SPS_RS05790 PF02887 Pyruvate kinase, alpha/beta domain SPS_RS05795 PF00365 Phosphofructokinase SPS_RS05800 PF14579 Helix-hairpin-helix motif SPS_RS05800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPS_RS05800 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPS_RS05800 PF01336 OB-fold nucleic acid binding domain SPS_RS05800 PF02811 PHP domain SPS_RS05805 PF00392 Bacterial regulatory proteins, gntR family SPS_RS05810 PF00005 ABC transporter SPS_RS05830 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain SPS_RS05835 PF02661 Fic/DOC family SPS_RS05835 PF13784 Fic/DOC family N-terminal SPS_RS05840 PF05257 CHAP domain SPS_RS05840 PF01520 N-acetylmuramoyl-L-alanine amidase SPS_RS05840 PF08460 Bacterial SH3 domain SPS_RS05935 PF00574 Clp protease SPS_RS05980 PF00589 Phage integrase family SPS_RS06005 PF00436 Single-strand binding protein family SPS_RS06040 PF01695 IstB-like ATP binding protein SPS_RS06050 PF03796 DnaB-like helicase C terminal domain SPS_RS06050 PF00772 DnaB-like helicase N terminal domain SPS_RS06105 PF00589 Phage integrase family SPS_RS06110 PF09711 CRISPR-associated protein (Cas_Csn2) SPS_RS06115 PF09827 CRISPR associated protein Cas2 SPS_RS06120 PF01867 CRISPR associated protein Cas1 SPS_RS06125 PF13395 HNH endonuclease SPS_RS06125 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 SPS_RS06125 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 SPS_RS06125 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 SPS_RS06135 PF13344 Haloacid dehalogenase-like hydrolase SPS_RS06145 PF04055 Radical SAM superfamily SPS_RS06145 PF06969 HemN C-terminal domain SPS_RS06155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SPS_RS06155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SPS_RS06155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SPS_RS06155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SPS_RS06165 PF02457 DisA bacterial checkpoint controller nucleotide-binding SPS_RS06170 PF08353 Domain of unknown function (DUF1727) SPS_RS06170 PF08245 Mur ligase middle domain SPS_RS06175 PF07685 CobB/CobQ-like glutamine amidotransferase domain SPS_RS06180 PF10437 Bacterial lipoate protein ligase C-terminus SPS_RS06180 PF03099 Biotin/lipoate A/B protein ligase family SPS_RS06185 PF02278 Polysaccharide lyase family 8, super-sandwich domain SPS_RS06185 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain SPS_RS06185 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain SPS_RS06190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPS_RS06190 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPS_RS06200 PF02817 e3 binding domain SPS_RS06200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SPS_RS06200 PF00364 Biotin-requiring enzyme SPS_RS06205 PF02779 Transketolase, pyrimidine binding domain SPS_RS06205 PF00364 Biotin-requiring enzyme SPS_RS06205 PF02780 Transketolase, C-terminal domain SPS_RS06210 PF00676 Dehydrogenase E1 component SPS_RS06215 PF12848 ABC transporter SPS_RS06215 PF16326 ABC transporter C-terminal domain SPS_RS06215 PF00005 ABC transporter SPS_RS06225 PF00756 Putative esterase SPS_RS06230 PF17770 Ribonuclease J C-terminal domain SPS_RS06230 PF00753 Metallo-beta-lactamase superfamily SPS_RS06230 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SPS_RS06235 PF00005 ABC transporter SPS_RS06255 PF05670 NFACT protein RNA binding domain SPS_RS06265 PF01594 AI-2E family transporter SPS_RS06270 PF00293 NUDIX domain SPS_RS06275 PF16363 GDP-mannose 4,6 dehydratase SPS_RS06280 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SPS_RS06285 PF00483 Nucleotidyl transferase SPS_RS06290 PF01266 FAD dependent oxidoreductase SPS_RS06295 PF01784 NIF3 (NGG1p interacting factor 3) SPS_RS06300 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SPS_RS06305 PF10576 Iron-sulfur binding domain of endonuclease III SPS_RS06305 PF00633 Helix-hairpin-helix motif SPS_RS06305 PF00730 HhH-GPD superfamily base excision DNA repair protein SPS_RS06315 PF00156 Phosphoribosyl transferase domain SPS_RS06320 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SPS_RS06320 PF01368 DHH family SPS_RS06320 PF02272 DHHA1 domain SPS_RS06320 PF17768 RecJ OB domain SPS_RS06325 PF00106 short chain dehydrogenase SPS_RS06330 PF00753 Metallo-beta-lactamase superfamily SPS_RS06330 PF12706 Beta-lactamase superfamily domain SPS_RS06335 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SPS_RS06335 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SPS_RS06340 PF01926 50S ribosome-binding GTPase SPS_RS06340 PF13167 GTP-binding GTPase N-terminal SPS_RS06340 PF16360 GTP-binding GTPase Middle Region SPS_RS06360 PF17773 UPF0176 acylphosphatase like domain SPS_RS06360 PF00581 Rhodanese-like domain SPS_RS06360 PF12368 Rhodanase C-terminal SPS_RS06375 PF00575 S1 RNA binding domain SPS_RS06395 PF01063 Amino-transferase class IV SPS_RS06400 PF00521 DNA gyrase/topoisomerase IV, subunit A SPS_RS06400 PF03989 DNA gyrase C-terminal domain, beta-propeller SPS_RS06405 PF00986 DNA gyrase B subunit, carboxyl terminus SPS_RS06405 PF00204 DNA gyrase B SPS_RS06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS06405 PF01751 Toprim domain SPS_RS06410 PF02660 Glycerol-3-phosphate acyltransferase SPS_RS06415 PF01979 Amidohydrolase family SPS_RS06420 PF03167 Uracil DNA glycosylase superfamily SPS_RS06425 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS06430 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPS_RS06435 PF01425 Amidase SPS_RS06440 PF00156 Phosphoribosyl transferase domain SPS_RS06445 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SPS_RS06455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPS_RS06455 PF03466 LysR substrate binding domain SPS_RS06465 PF01048 Phosphorylase superfamily SPS_RS06470 PF01048 Phosphorylase superfamily SPS_RS06475 PF03960 ArsC family SPS_RS06480 PF01676 Metalloenzyme superfamily SPS_RS06485 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SPS_RS06490 PF00004 ATPase family associated with various cellular activities (AAA) SPS_RS06490 PF07724 AAA domain (Cdc48 subfamily) SPS_RS06490 PF17871 AAA lid domain SPS_RS06490 PF10431 C-terminal, D2-small domain, of ClpB protein SPS_RS06500 PF01926 50S ribosome-binding GTPase SPS_RS06505 PF10431 C-terminal, D2-small domain, of ClpB protein SPS_RS06505 PF06689 ClpX C4-type zinc finger SPS_RS06505 PF07724 AAA domain (Cdc48 subfamily) SPS_RS06515 PF00186 Dihydrofolate reductase SPS_RS06520 PF00303 Thymidylate synthase SPS_RS06525 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SPS_RS06525 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SPS_RS06530 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SPS_RS06535 PF01070 FMN-dependent dehydrogenase SPS_RS06540 PF08544 GHMP kinases C terminal SPS_RS06540 PF00288 GHMP kinases N terminal domain SPS_RS06550 PF00288 GHMP kinases N terminal domain SPS_RS06550 PF10509 Galactokinase galactose-binding signature SPS_RS06550 PF08544 GHMP kinases C terminal SPS_RS06555 PF00512 His Kinase A (phospho-acceptor) domain SPS_RS06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS06560 PF00486 Transcriptional regulatory protein, C terminal SPS_RS06560 PF00072 Response regulator receiver domain SPS_RS06565 PF04607 Region found in RelA / SpoT proteins SPS_RS06570 PF02872 5'-nucleotidase, C-terminal domain SPS_RS06570 PF17936 Bacterial Ig domain SPS_RS06570 PF00149 Calcineurin-like phosphoesterase SPS_RS06575 PF01327 Polypeptide deformylase SPS_RS06585 PF00005 ABC transporter SPS_RS06585 PF12848 ABC transporter SPS_RS06585 PF16326 ABC transporter C-terminal domain SPS_RS06590 PF01743 Poly A polymerase head domain SPS_RS06590 PF12627 Probable RNA and SrmB- binding site of polymerase A SPS_RS06590 PF13735 tRNA nucleotidyltransferase domain 2 putative SPS_RS06595 PF02645 Uncharacterised protein, DegV family COG1307 SPS_RS06605 PF00334 Nucleoside diphosphate kinase SPS_RS06610 PF09028 Mac 1 SPS_RS06620 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPS_RS06620 PF01476 LysM domain SPS_RS06625 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPS_RS06625 PF01476 LysM domain SPS_RS06630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPS_RS06630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPS_RS06635 PF00294 pfkB family carbohydrate kinase SPS_RS06640 PF08220 DeoR-like helix-turn-helix domain SPS_RS06640 PF00455 DeoR C terminal sensor domain SPS_RS06645 PF08546 Ketopantoate reductase PanE/ApbA C terminal SPS_RS06645 PF02558 Ketopantoate reductase PanE/ApbA SPS_RS06655 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPS_RS06660 PF01746 tRNA (Guanine-1)-methyltransferase SPS_RS06665 PF01782 RimM N-terminal domain SPS_RS06665 PF05239 PRC-barrel domain SPS_RS06695 PF00886 Ribosomal protein S16 SPS_RS06700 PF03009 Glycerophosphoryl diester phosphodiesterase family SPS_RS06705 PF02687 FtsX-like permease family SPS_RS06705 PF12704 MacB-like periplasmic core domain SPS_RS06710 PF00005 ABC transporter SPS_RS06715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SPS_RS06720 PF02142 MGS-like domain SPS_RS06720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SPS_RS06720 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SPS_RS06725 PF00117 Glutamine amidotransferase class-I SPS_RS06725 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SPS_RS06730 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SPS_RS06730 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SPS_RS06735 PF00860 Permease family SPS_RS06740 PF00156 Phosphoribosyl transferase domain SPS_RS06745 PF01479 S4 domain SPS_RS06745 PF00849 RNA pseudouridylate synthase SPS_RS06750 PF01252 Signal peptidase (SPase) II SPS_RS06755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SPS_RS06755 PF03466 LysR substrate binding domain SPS_RS06760 PF01016 Ribosomal L27 protein SPS_RS06770 PF00829 Ribosomal prokaryotic L21 protein SPS_RS06775 PF09587 Bacterial capsule synthesis protein PGA_cap SPS_RS06780 PF02568 Thiamine biosynthesis protein (ThiI) SPS_RS06780 PF02926 THUMP domain SPS_RS06785 PF00266 Aminotransferase class-V SPS_RS06795 PF02875 Mur ligase family, glutamate ligase domain SPS_RS06795 PF08245 Mur ligase middle domain SPS_RS06800 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPS_RS06800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SPS_RS06805 PF06133 Control of competence regulator ComK, YlbF/YmcA SPS_RS06810 PF01264 Chorismate synthase SPS_RS06815 PF01487 Type I 3-dehydroquinase SPS_RS06820 PF10672 S-adenosylmethionine-dependent methyltransferase SPS_RS06820 PF17785 PUA-like domain SPS_RS06825 PF00884 Sulfatase SPS_RS06830 PF00453 Ribosomal protein L20 SPS_RS06835 PF01632 Ribosomal protein L35 SPS_RS06840 PF00707 Translation initiation factor IF-3, C-terminal domain SPS_RS06840 PF05198 Translation initiation factor IF-3, N-terminal domain SPS_RS06845 PF02224 Cytidylate kinase SPS_RS06860 PF07687 Peptidase dimerisation domain SPS_RS06860 PF01546 Peptidase family M20/M25/M40 SPS_RS06880 PF00535 Glycosyl transferase family 2 SPS_RS06895 PF00535 Glycosyl transferase family 2 SPS_RS06900 PF00005 ABC transporter SPS_RS06910 PF02709 N-terminal domain of galactosyltransferase SPS_RS06910 PF00535 Glycosyl transferase family 2 SPS_RS06920 PF04321 RmlD substrate binding domain SPS_RS06925 PF01883 Iron-sulfur cluster assembly protein SPS_RS06930 PF03979 Sigma-70 factor, region 1.1 SPS_RS06930 PF00140 Sigma-70 factor, region 1.2 SPS_RS06930 PF04542 Sigma-70 region 2 SPS_RS06930 PF04539 Sigma-70 region 3 SPS_RS06930 PF04545 Sigma-70, region 4 SPS_RS06935 PF01807 CHC2 zinc finger SPS_RS06935 PF10410 DnaB-helicase binding domain of primase SPS_RS06935 PF08275 DNA primase catalytic core, N-terminal domain SPS_RS06940 PF01741 Large-conductance mechanosensitive channel, MscL SPS_RS06945 PF01165 Ribosomal protein S21 SPS_RS06950 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPS_RS06955 PF00580 UvrD/REP helicase N-terminal domain SPS_RS06955 PF13361 UvrD-like helicase C-terminal domain SPS_RS06955 PF12705 PD-(D/E)XK nuclease superfamily SPS_RS06960 PF12705 PD-(D/E)XK nuclease superfamily SPS_RS06970 PF00005 ABC transporter SPS_RS06975 PF02687 FtsX-like permease family SPS_RS06990 PF03483 B3/4 domain SPS_RS06990 PF03147 Ferredoxin-fold anticodon binding domain SPS_RS06990 PF01588 Putative tRNA binding domain SPS_RS06990 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SPS_RS06990 PF03484 tRNA synthetase B5 domain SPS_RS06995 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SPS_RS06995 PF01409 tRNA synthetases class II core domain (F) SPS_RS07010 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SPS_RS07020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SPS_RS07020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SPS_RS07025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPS_RS07025 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPS_RS07030 PF00231 ATP synthase SPS_RS07035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SPS_RS07035 PF00306 ATP synthase alpha/beta chain, C terminal domain SPS_RS07035 PF02874 ATP synthase alpha/beta family, beta-barrel domain SPS_RS07040 PF00213 ATP synthase delta (OSCP) subunit SPS_RS07045 PF00430 ATP synthase B/B' CF(0) SPS_RS07050 PF00119 ATP synthase A chain SPS_RS07055 PF00137 ATP synthase subunit C SPS_RS07060 PF00781 Diacylglycerol kinase catalytic domain SPS_RS07065 PF00533 BRCA1 C Terminus (BRCT) domain SPS_RS07065 PF01653 NAD-dependent DNA ligase adenylation domain SPS_RS07065 PF03120 NAD-dependent DNA ligase OB-fold domain SPS_RS07065 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SPS_RS07065 PF12826 Helix-hairpin-helix motif SPS_RS07070 PF06177 QueT transporter SPS_RS07090 PF00005 ABC transporter SPS_RS07125 PF03952 Enolase, N-terminal domain SPS_RS07125 PF00113 Enolase, C-terminal TIM barrel domain SPS_RS07135 PF06160 Septation ring formation regulator, EzrA SPS_RS07140 PF00986 DNA gyrase B subunit, carboxyl terminus SPS_RS07140 PF01751 Toprim domain SPS_RS07140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS07140 PF00204 DNA gyrase B SPS_RS07155 PF01245 Ribosomal protein L19 SPS_RS07160 PF00654 Voltage gated chloride channel SPS_RS07170 PF00258 Flavodoxin SPS_RS07175 PF02272 DHHA1 domain SPS_RS07175 PF01368 DHH family SPS_RS07180 PF01197 Ribosomal protein L31 SPS_RS07185 PF01380 SIS domain SPS_RS07190 PF00392 Bacterial regulatory proteins, gntR family SPS_RS07190 PF07702 UTRA domain SPS_RS07195 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SPS_RS07195 PF01297 Zinc-uptake complex component A periplasmic SPS_RS07200 PF03577 Peptidase family C69 SPS_RS07205 PF14527 WhiA LAGLIDADG-like domain SPS_RS07205 PF02650 WhiA C-terminal HTH domain SPS_RS07205 PF10298 WhiA N-terminal LAGLIDADG-like domain SPS_RS07210 PF01933 Uncharacterised protein family UPF0052 SPS_RS07215 PF03668 P-loop ATPase protein family SPS_RS07220 PF00152 tRNA synthetases class II (D, K and N) SPS_RS07220 PF01336 OB-fold nucleic acid binding domain SPS_RS07225 PF00155 Aminotransferase class I and II SPS_RS07230 PF04851 Type III restriction enzyme, res subunit SPS_RS07230 PF00929 Exonuclease SPS_RS07230 PF13307 Helicase C-terminal domain SPS_RS07245 PF02687 FtsX-like permease family SPS_RS07245 PF18075 FtsX extracellular domain SPS_RS07250 PF00005 ABC transporter SPS_RS07255 PF03462 PCRF domain SPS_RS07255 PF00472 RF-1 domain SPS_RS07260 PF08331 Domain of unknown function (DUF1730) SPS_RS07265 PF13419 Haloacid dehalogenase-like hydrolase SPS_RS07270 PF01081 KDPG and KHG aldolase SPS_RS07295 PF07470 Glycosyl Hydrolase Family 88 SPS_RS07300 PF03830 PTS system sorbose subfamily IIB component SPS_RS07305 PF03609 PTS system sorbose-specific iic component SPS_RS07310 PF03613 PTS system mannose/fructose/sorbose family IID component SPS_RS07320 PF00356 Bacterial regulatory proteins, lacI family SPS_RS07325 PF00690 Cation transporter/ATPase, N-terminus SPS_RS07325 PF00689 Cation transporting ATPase, C-terminus SPS_RS07335 PF01966 HD domain SPS_RS07360 PF00121 Triosephosphate isomerase SPS_RS07365 PF03143 Elongation factor Tu C-terminal domain SPS_RS07365 PF03144 Elongation factor Tu domain 2 SPS_RS07365 PF00009 Elongation factor Tu GTP binding domain SPS_RS07370 PF01098 Cell cycle protein SPS_RS07375 PF00311 Phosphoenolpyruvate carboxylase SPS_RS07380 PF08439 Oligopeptidase F SPS_RS07380 PF01432 Peptidase family M3 SPS_RS07385 PF00255 Glutathione peroxidase SPS_RS07405 PF09515 Thiamine transporter protein (Thia_YuaJ) SPS_RS07425 PF01336 OB-fold nucleic acid binding domain SPS_RS07425 PF00152 tRNA synthetases class II (D, K and N) SPS_RS07435 PF02229 Transcriptional Coactivator p15 (PC4) SPS_RS07440 PF01136 Peptidase family U32 SPS_RS07440 PF16325 Peptidase family U32 C-terminal domain SPS_RS07455 PF12732 YtxH-like protein SPS_RS07465 PF01790 Prolipoprotein diacylglyceryl transferase SPS_RS07470 PF02603 HPr Serine kinase N terminus SPS_RS07470 PF07475 HPr Serine kinase C-terminal domain SPS_RS07480 PF10263 SprT-like family SPS_RS07485 PF09371 Tex-like protein N-terminal domain SPS_RS07485 PF00575 S1 RNA binding domain SPS_RS07485 PF17674 HHH domain SPS_RS07485 PF16921 Tex protein YqgF-like domain SPS_RS07495 PF03773 Predicted permease SPS_RS07500 PF09323 Domain of unknown function (DUF1980) SPS_RS07505 PF00232 Glycosyl hydrolase family 1 SPS_RS07510 PF02378 Phosphotransferase system, EIIC SPS_RS07510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPS_RS07510 PF00367 phosphotransferase system, EIIB SPS_RS07515 PF03123 CAT RNA binding domain SPS_RS07515 PF00874 PRD domain SPS_RS07520 PF07690 Major Facilitator Superfamily SPS_RS07525 PF00448 SRP54-type protein, GTPase domain SPS_RS07525 PF02881 SRP54-type protein, helical bundle domain SPS_RS07545 PF13683 Integrase core domain SPS_RS07545 PF01610 Transposase SPS_RS07605 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPS_RS07605 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SPS_RS07605 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPS_RS07625 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) SPS_RS07645 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SPS_RS07645 PF08501 Shikimate dehydrogenase substrate binding domain SPS_RS07655 PF02463 RecF/RecN/SMC N terminal domain SPS_RS07655 PF06470 SMC proteins Flexible Hinge Domain SPS_RS07660 PF00035 Double-stranded RNA binding motif SPS_RS07660 PF14622 Ribonuclease-III-like SPS_RS07665 PF00753 Metallo-beta-lactamase superfamily SPS_RS07670 PF13426 PAS domain SPS_RS07670 PF00512 His Kinase A (phospho-acceptor) domain SPS_RS07670 PF00672 HAMP domain SPS_RS07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS07675 PF00072 Response regulator receiver domain SPS_RS07675 PF00486 Transcriptional regulatory protein, C terminal SPS_RS07690 PF00108 Thiolase, N-terminal domain SPS_RS07690 PF02803 Thiolase, C-terminal domain SPS_RS07710 PF00005 ABC transporter SPS_RS07715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SPS_RS07715 PF03129 Anticodon binding domain SPS_RS07715 PF02824 TGS domain SPS_RS07715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPS_RS07720 PF00534 Glycosyl transferases group 1 SPS_RS07720 PF13439 Glycosyltransferase Family 4 SPS_RS07725 PF13439 Glycosyltransferase Family 4 SPS_RS07725 PF00534 Glycosyl transferases group 1 SPS_RS07730 PF00356 Bacterial regulatory proteins, lacI family SPS_RS07735 PF01321 Creatinase/Prolidase N-terminal domain SPS_RS07735 PF00557 Metallopeptidase family M24 SPS_RS07740 PF00881 Nitroreductase family SPS_RS07745 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPS_RS07750 PF00535 Glycosyl transferase family 2 SPS_RS07765 PF01470 Pyroglutamyl peptidase SPS_RS07775 PF01668 SmpB protein SPS_RS07780 PF17876 Cold shock domain SPS_RS07780 PF00575 S1 RNA binding domain SPS_RS07780 PF00773 RNB domain SPS_RS07780 PF08206 Ribonuclease B OB domain SPS_RS07790 PF07690 Major Facilitator Superfamily SPS_RS07790 PF00083 Sugar (and other) transporter SPS_RS07795 PF05872 Bacterial protein of unknown function (DUF853) SPS_RS07800 PF01121 Dephospho-CoA kinase SPS_RS07805 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SPS_RS07805 PF06827 Zinc finger found in FPG and IleRS SPS_RS07805 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SPS_RS07865 PF13344 Haloacid dehalogenase-like hydrolase SPS_RS07865 PF00293 NUDIX domain SPS_RS07870 PF07650 KH domain SPS_RS07870 PF01926 50S ribosome-binding GTPase SPS_RS07875 PF01219 Prokaryotic diacylglycerol kinase SPS_RS07880 PF02130 Uncharacterized protein family UPF0054 SPS_RS07885 PF03167 Uracil DNA glycosylase superfamily SPS_RS07890 PF02562 PhoH-like protein SPS_RS07895 PF06100 MCRA family SPS_RS07905 PF06855 YozE SAM-like fold SPS_RS07910 PF01625 Peptide methionine sulfoxide reductase SPS_RS07920 PF01765 Ribosome recycling factor SPS_RS07925 PF00696 Amino acid kinase family SPS_RS07930 PF00687 Ribosomal protein L1p/L10e family SPS_RS07935 PF00298 Ribosomal protein L11, RNA binding domain SPS_RS07935 PF03946 Ribosomal protein L11, N-terminal domain SPS_RS07945 PF09397 Ftsk gamma domain SPS_RS07945 PF17854 FtsK alpha domain SPS_RS07945 PF01580 FtsK/SpoIIIE family SPS_RS07950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SPS_RS07955 PF00950 ABC 3 transport family SPS_RS07960 PF00005 ABC transporter SPS_RS07965 PF01297 Zinc-uptake complex component A periplasmic SPS_RS07980 PF01048 Phosphorylase superfamily SPS_RS07990 PF00293 NUDIX domain SPS_RS07995 PF12804 MobA-like NTP transferase domain SPS_RS07995 PF00132 Bacterial transferase hexapeptide (six repeats) SPS_RS07995 PF14602 Hexapeptide repeat of succinyl-transferase SPS_RS08000 PF07690 Major Facilitator Superfamily SPS_RS08005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SPS_RS08005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPS_RS08035 PF03496 ADP-ribosyltransferase exoenzyme SPS_RS08040 PF08343 Ribonucleotide reductase N-terminal SPS_RS08040 PF02867 Ribonucleotide reductase, barrel domain SPS_RS08040 PF00317 Ribonucleotide reductase, all-alpha domain SPS_RS08045 PF07972 NrdI Flavodoxin like SPS_RS08050 PF00268 Ribonucleotide reductase, small chain SPS_RS08055 PF01588 Putative tRNA binding domain SPS_RS08055 PF09334 tRNA synthetases class I (M) SPS_RS08065 PF00082 Subtilase family SPS_RS08065 PF02225 PA domain SPS_RS08065 PF06280 Fn3-like domain SPS_RS08065 PF00746 LPXTG cell wall anchor motif SPS_RS08070 PF01070 FMN-dependent dehydrogenase SPS_RS08080 PF03372 Endonuclease/Exonuclease/phosphatase family SPS_RS08085 PF03960 ArsC family SPS_RS08090 PF03932 CutC family SPS_RS08100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SPS_RS08105 PF06156 Initiation control protein YabA SPS_RS08120 PF09115 DNA polymerase III, delta subunit, C terminal SPS_RS08125 PF02223 Thymidylate kinase SPS_RS08130 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SPS_RS08135 PF00574 Clp protease SPS_RS08145 PF14667 Polysaccharide biosynthesis C-terminal domain SPS_RS08145 PF01943 Polysaccharide biosynthesis protein SPS_RS08150 PF08245 Mur ligase middle domain SPS_RS08150 PF02875 Mur ligase family, glutamate ligase domain SPS_RS08155 PF00005 ABC transporter SPS_RS08160 PF01497 Periplasmic binding protein SPS_RS08165 PF01032 FecCD transport family SPS_RS08170 PF01032 FecCD transport family SPS_RS08180 PF01368 DHH family SPS_RS08180 PF02833 DHHA2 domain SPS_RS08185 PF04055 Radical SAM superfamily SPS_RS08190 PF03471 Transporter associated domain SPS_RS08190 PF01595 Cyclin M transmembrane N-terminal domain SPS_RS08190 PF00571 CBS domain SPS_RS08195 PF06962 Putative rRNA methylase SPS_RS08200 PF16199 Radical_SAM C-terminal domain SPS_RS08200 PF04055 Radical SAM superfamily SPS_RS08205 PF01569 PAP2 superfamily SPS_RS08210 PF12822 ECF transporter, substrate-specific component SPS_RS08215 PF00588 SpoU rRNA Methylase family SPS_RS08220 PF01809 Putative membrane protein insertion efficiency factor SPS_RS08225 PF01479 S4 domain SPS_RS08225 PF00849 RNA pseudouridylate synthase SPS_RS08230 PF04079 Segregation and condensation complex subunit ScpB SPS_RS08235 PF02616 Segregation and condensation protein ScpA SPS_RS08255 PF01725 Ham1 family SPS_RS08260 PF01177 Asp/Glu/Hydantoin racemase SPS_RS08265 PF03672 Uncharacterised protein family (UPF0154) SPS_RS08270 PF01027 Inhibitor of apoptosis-promoting Bax1 SPS_RS08280 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPS_RS08280 PF00588 SpoU rRNA Methylase family SPS_RS08285 PF00708 Acylphosphatase SPS_RS08290 PF02096 60Kd inner membrane protein SPS_RS08295 PF03449 Transcription elongation factor, N-terminal SPS_RS08295 PF01272 Transcription elongation factor, GreA/GreB, C-term SPS_RS08300 PF02618 YceG-like family SPS_RS08310 PF08245 Mur ligase middle domain SPS_RS08310 PF02875 Mur ligase family, glutamate ligase domain SPS_RS08310 PF01225 Mur ligase family, catalytic domain SPS_RS08320 PF12419 SNF2 Helicase protein SPS_RS08320 PF00271 Helicase conserved C-terminal domain SPS_RS08320 PF00176 SNF2 family N-terminal domain SPS_RS08325 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SPS_RS08325 PF01926 50S ribosome-binding GTPase SPS_RS08330 PF01695 IstB-like ATP binding protein SPS_RS08330 PF07319 Primosomal protein DnaI N-terminus SPS_RS08340 PF03477 ATP cone domain SPS_RS08345 PF00512 His Kinase A (phospho-acceptor) domain SPS_RS08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS08345 PF18719 ArlS sensor domain SPS_RS08350 PF00072 Response regulator receiver domain SPS_RS08350 PF00486 Transcriptional regulatory protein, C terminal SPS_RS08360 PF01435 Peptidase family M48 SPS_RS08365 PF04011 LemA family SPS_RS08370 PF02527 rRNA small subunit methyltransferase G SPS_RS08375 PF02386 Cation transport protein SPS_RS08380 PF02080 TrkA-C domain SPS_RS08380 PF02254 TrkA-N domain SPS_RS08385 PF00375 Sodium:dicarboxylate symporter family SPS_RS08390 PF05525 Branched-chain amino acid transport protein SPS_RS08395 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS08400 PF09383 NIL domain SPS_RS08400 PF00005 ABC transporter SPS_RS08405 PF03180 NLPA lipoprotein SPS_RS08410 PF00497 Bacterial extracellular solute-binding proteins, family 3 SPS_RS08415 PF01709 Transcriptional regulator SPS_RS08420 PF05636 HIGH Nucleotidyl Transferase SPS_RS08425 PF13649 Methyltransferase domain SPS_RS08435 PF01966 HD domain SPS_RS08440 PF01467 Cytidylyltransferase-like SPS_RS08445 PF01985 CRS1 / YhbY (CRM) domain SPS_RS08450 PF01926 50S ribosome-binding GTPase SPS_RS08465 PF01609 Transposase DDE domain SPS_RS08465 PF13808 DDE_Tnp_1-associated SPS_RS08505 PF02595 Glycerate kinase family SPS_RS08510 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SPS_RS08510 PF12008 Type I restriction and modification enzyme - subunit R C terminal SPS_RS08510 PF18766 SWI2/SNF2 ATPase SPS_RS08520 PF02384 N-6 DNA Methylase SPS_RS08520 PF12161 HsdM N-terminal domain SPS_RS08525 PF00486 Transcriptional regulatory protein, C terminal SPS_RS08525 PF00072 Response regulator receiver domain SPS_RS08535 PF02687 FtsX-like permease family SPS_RS08540 PF00005 ABC transporter SPS_RS08545 PF00664 ABC transporter transmembrane region SPS_RS08545 PF00005 ABC transporter SPS_RS08560 PF04604 Type-A lantibiotic SPS_RS08565 PF00232 Glycosyl hydrolase family 1 SPS_RS08570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPS_RS08570 PF02378 Phosphotransferase system, EIIC SPS_RS08575 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPS_RS08580 PF01791 DeoC/LacD family aldolase SPS_RS08585 PF00294 pfkB family carbohydrate kinase SPS_RS08590 PF02502 Ribose/Galactose Isomerase SPS_RS08595 PF02502 Ribose/Galactose Isomerase SPS_RS08600 PF08220 DeoR-like helix-turn-helix domain SPS_RS08600 PF00455 DeoR C terminal sensor domain SPS_RS08620 PF00380 Ribosomal protein S9/S16 SPS_RS08625 PF00572 Ribosomal protein L13 SPS_RS08630 PF01381 Helix-turn-helix SPS_RS08640 PF02645 Uncharacterised protein, DegV family COG1307 SPS_RS08650 PF08032 RNA 2'-O ribose methyltransferase substrate binding SPS_RS08650 PF00588 SpoU rRNA Methylase family SPS_RS08660 PF00636 Ribonuclease III domain SPS_RS08665 PF09190 DALR domain SPS_RS08665 PF01406 tRNA synthetases class I (C) catalytic domain SPS_RS08675 PF00132 Bacterial transferase hexapeptide (six repeats) SPS_RS08675 PF06426 Serine acetyltransferase, N-terminal SPS_RS08685 PF00575 S1 RNA binding domain SPS_RS08685 PF03725 3' exoribonuclease family, domain 2 SPS_RS08685 PF01138 3' exoribonuclease family, domain 1 SPS_RS08685 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SPS_RS08685 PF00013 KH domain SPS_RS08690 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPS_RS08695 PF03611 PTS system sugar-specific permease component SPS_RS08700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPS_RS08705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPS_RS08705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SPS_RS08705 PF05043 Mga helix-turn-helix domain SPS_RS08705 PF08279 HTH domain SPS_RS08705 PF00874 PRD domain SPS_RS08710 PF00312 Ribosomal protein S15 SPS_RS08725 PF01327 Polypeptide deformylase SPS_RS08730 PF03358 NADPH-dependent FMN reductase SPS_RS08735 PF01047 MarR family SPS_RS08740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SPS_RS08740 PF07733 Bacterial DNA polymerase III alpha NTPase domain SPS_RS08740 PF14579 Helix-hairpin-helix motif SPS_RS08740 PF02811 PHP domain SPS_RS08740 PF14480 DNA polymerase III polC-type N-terminus I SPS_RS08740 PF11490 DNA polymerase III polC-type N-terminus II SPS_RS08740 PF00929 Exonuclease SPS_RS08745 PF04073 Aminoacyl-tRNA editing domain SPS_RS08745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SPS_RS08745 PF03129 Anticodon binding domain SPS_RS08750 PF02163 Peptidase family M50 SPS_RS08750 PF13180 PDZ domain SPS_RS08760 PF01255 Putative undecaprenyl diphosphate synthase SPS_RS08765 PF02699 Preprotein translocase subunit SPS_RS08775 PF17999 Pullulanase N1-terminal domain SPS_RS08775 PF00128 Alpha amylase, catalytic domain SPS_RS08775 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SPS_RS08780 PF00128 Alpha amylase, catalytic domain SPS_RS08785 PF00005 ABC transporter SPS_RS08785 PF03459 TOBE domain SPS_RS08785 PF17912 MalK OB fold domain SPS_RS08790 PF13556 PucR C-terminal helix-turn-helix domain SPS_RS08795 PF02821 Staphylokinase/Streptokinase family SPS_RS08800 PF02580 D-Tyr-tRNA(Tyr) deacylase SPS_RS08805 PF02824 TGS domain SPS_RS08805 PF04607 Region found in RelA / SpoT proteins SPS_RS08805 PF13291 ACT domain SPS_RS08810 PF02370 M protein repeat SPS_RS08810 PF00746 LPXTG cell wall anchor motif SPS_RS08820 PF01609 Transposase DDE domain SPS_RS08820 PF13808 DDE_Tnp_1-associated SPS_RS08825 PF07972 NrdI Flavodoxin like SPS_RS08830 PF03372 Endonuclease/Exonuclease/phosphatase family SPS_RS08835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SPS_RS08835 PF00367 phosphotransferase system, EIIB SPS_RS08835 PF02378 Phosphotransferase system, EIIC SPS_RS08840 PF04452 RNA methyltransferase SPS_RS08855 PF04715 Anthranilate synthase component I, N terminal region SPS_RS08855 PF00425 chorismate binding enzyme SPS_RS08860 PF00117 Glutamine amidotransferase class-I SPS_RS08865 PF12002 MgsA AAA+ ATPase C terminal SPS_RS08865 PF05496 Holliday junction DNA helicase RuvB P-loop domain SPS_RS08865 PF16193 AAA C-terminal domain SPS_RS08885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SPS_RS08890 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS08895 PF00528 Binding-protein-dependent transport system inner membrane component SPS_RS08900 PF00005 ABC transporter SPS_RS08900 PF12558 ATP-binding cassette cobalt transporter SPS_RS08905 PF00005 ABC transporter SPS_RS08910 PF05532 CsbD-like SPS_RS08920 PF01297 Zinc-uptake complex component A periplasmic SPS_RS08925 PF06280 Fn3-like domain SPS_RS08925 PF02225 PA domain SPS_RS08925 PF00082 Subtilase family SPS_RS08930 PF00746 LPXTG cell wall anchor motif SPS_RS08930 PF04650 YSIRK type signal peptide SPS_RS08935 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SPS_RS08935 PF05043 Mga helix-turn-helix domain SPS_RS08935 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SPS_RS08945 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SPS_RS08945 PF05257 CHAP domain SPS_RS08950 PF13493 Domain of unknown function (DUF4118) SPS_RS08950 PF00512 His Kinase A (phospho-acceptor) domain SPS_RS08950 PF02702 Osmosensitive K+ channel His kinase sensor domain SPS_RS08950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPS_RS08955 PF00486 Transcriptional regulatory protein, C terminal SPS_RS08955 PF00072 Response regulator receiver domain SPS_RS08960 PF12704 MacB-like periplasmic core domain SPS_RS08960 PF02687 FtsX-like permease family SPS_RS08965 PF00005 ABC transporter SPS_RS08990 PF13145 PPIC-type PPIASE domain SPS_RS09000 PF01640 Peptidase C10 family SPS_RS09000 PF13734 Spi protease inhibitor SPS_RS09015 PF04608 Phosphatidylglycerophosphatase A SPS_RS09020 PF00465 Iron-containing alcohol dehydrogenase SPS_RS09025 PF00923 Transaldolase/Fructose-6-phosphate aldolase SPS_RS09030 PF01228 Glycine radical SPS_RS09030 PF02901 Pyruvate formate lyase-like SPS_RS09035 PF02378 Phosphotransferase system, EIIC SPS_RS09040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SPS_RS09045 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SPS_RS09050 PF04198 Putative sugar-binding domain SPS_RS09055 PF00455 DeoR C terminal sensor domain SPS_RS09055 PF08220 DeoR-like helix-turn-helix domain SPS_RS09060 PF04055 Radical SAM superfamily SPS_RS09075 PF00905 Penicillin binding protein transpeptidase domain SPS_RS09075 PF00912 Transglycosylase SPS_RS09090 PF01479 S4 domain SPS_RS09090 PF00849 RNA pseudouridylate synthase SPS_RS09100 PF03577 Peptidase family C69 SPS_RS09115 PF00118 TCP-1/cpn60 chaperonin family SPS_RS09120 PF00166 Chaperonin 10 Kd subunit SPS_RS09125 PF07724 AAA domain (Cdc48 subfamily) SPS_RS09125 PF10431 C-terminal, D2-small domain, of ClpB protein SPS_RS09125 PF02861 Clp amino terminal domain, pathogenicity island component SPS_RS09125 PF00004 ATPase family associated with various cellular activities (AAA) SPS_RS09125 PF17871 AAA lid domain SPS_RS09130 PF17727 CtsR C-terminal dimerization domain SPS_RS09130 PF05848 CtsR N-terminal HTH domain SPS_RS09135 PF00313 'Cold-shock' DNA-binding domain SPS_RS09145 PF00578 AhpC/TSA family SPS_RS09150 PF07992 Pyridine nucleotide-disulphide oxidoreductase SPS_RS09150 PF13192 Thioredoxin domain SPS_RS09155 PF01979 Amidohydrolase family SPS_RS09160 PF01175 Urocanase Rossmann-like domain SPS_RS09160 PF17391 Urocanase N-terminal domain SPS_RS09160 PF17392 Urocanase C-terminal domain SPS_RS09165 PF02971 Formiminotransferase domain SPS_RS09165 PF07837 Formiminotransferase domain, N-terminal subdomain SPS_RS09170 PF04961 Formiminotransferase-cyclodeaminase SPS_RS09175 PF01268 Formate--tetrahydrofolate ligase SPS_RS09185 PF13520 Amino acid permease SPS_RS09190 PF00221 Aromatic amino acid lyase SPS_RS09195 PF00491 Arginase family SPS_RS09205 PF00318 Ribosomal protein S2 SPS_RS09210 PF00889 Elongation factor TS SPS_RS09215 PF01431 Peptidase family M13 SPS_RS09215 PF05649 Peptidase family M13 SPS_RS09220 PF16657 Maltogenic Amylase, C-terminal domain SPS_RS09220 PF00128 Alpha amylase, catalytic domain SPS_RS09225 PF02378 Phosphotransferase system, EIIC SPS_RS09225 PF00367 phosphotransferase system, EIIB SPS_RS09230 PF00392 Bacterial regulatory proteins, gntR family SPS_RS09230 PF07702 UTRA domain SPS_RS09240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SPS_RS09245 PF03883 Peroxide stress protein YaaA SPS_RS09260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SPS_RS09265 PF03477 ATP cone domain SPS_RS09265 PF13597 Anaerobic ribonucleoside-triphosphate reductase SPS_RS09275 PF06949 Protein of unknown function (DUF1292) SPS_RS09280 PF03652 Holliday junction resolvase SPS_RS09285 PF06135 IreB regulatory phosphoprotein SPS_RS09290 PF03960 ArsC family SPS_RS09295 PF00154 recA bacterial DNA recombination protein SPS_RS09300 PF02464 Competence-damaged protein SPS_RS09300 PF00994 Probable molybdopterin binding domain SPS_RS09300 PF18146 Damage-inducible protein CinA KH domain SPS_RS09305 PF00958 GMP synthase C terminal domain SPS_RS09305 PF00117 Glutamine amidotransferase class-I SPS_RS09305 PF03352 Methyladenine glycosylase SPS_RS09305 PF13302 Acetyltransferase (GNAT) domain SPS_RS09305 PF13673 Acetyltransferase (GNAT) domain SPS_RS09310 PF07499 RuvA, C-terminal domain SPS_RS09310 PF01330 RuvA N terminal domain SPS_RS09320 PF08676 MutL C terminal dimerisation domain SPS_RS09320 PF01119 DNA mismatch repair protein, C-terminal domain SPS_RS09325 PF01624 MutS domain I SPS_RS09325 PF05188 MutS domain II SPS_RS09325 PF05192 MutS domain III SPS_RS09325 PF00488 MutS domain V SPS_RS09325 PF05190 MutS family domain IV SPS_RS09335 PF01316 Arginine repressor, DNA binding domain SPS_RS09335 PF02863 Arginine repressor, C-terminal domain SPS_RS09340 PF03485 Arginyl tRNA synthetase N terminal domain SPS_RS09340 PF05746 DALR anticodon binding domain SPS_RS09340 PF00750 tRNA synthetases class I (R) SPS_RS09350 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPS_RS09350 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPS_RS09355 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPS_RS09355 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPS_RS09360 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SPS_RS09360 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SPS_RS09365 PF02938 GAD domain SPS_RS09365 PF00152 tRNA synthetases class II (D, K and N) SPS_RS09365 PF01336 OB-fold nucleic acid binding domain SPS_RS09370 PF13393 Histidyl-tRNA synthetase SPS_RS09370 PF03129 Anticodon binding domain SPS_RS09375 PF01783 Ribosomal L32p protein family SPS_RS09380 PF00471 Ribosomal protein L33 SPS_RS09390 PF01022 Bacterial regulatory protein, arsR family SPS_RS09420 PF00293 NUDIX domain SPS_RS09425 PF03551 Transcriptional regulator PadR-like family SPS_RS09450 PF00163 Ribosomal protein S4/S9 N-terminal domain SPS_RS09450 PF01479 S4 domain SPS_RS09460 PF00772 DnaB-like helicase N terminal domain SPS_RS09460 PF03796 DnaB-like helicase C terminal domain SPS_RS09465 PF03948 Ribosomal protein L9, C-terminal domain SPS_RS09465 PF01281 Ribosomal protein L9, N-terminal domain SPS_RS09470 PF01368 DHH family SPS_RS09470 PF02272 DHHA1 domain SPS_RS09475 PF01134 Glucose inhibited division protein A SPS_RS09475 PF13932 GidA associated domain SPS_RS09490 PF01842 ACT domain SPS_RS09490 PF03315 Serine dehydratase beta chain SPS_RS09495 PF03313 Serine dehydratase alpha chain SPS_RS09500 PF06737 Transglycosylase-like domain SPS_RS09505 PF02361 Cobalt transport protein SPS_RS09510 PF00005 ABC transporter SPS_RS09515 PF00005 ABC transporter SPS_RS09520 PF01066 CDP-alcohol phosphatidyltransferase SPS_RS09530 PF00675 Insulinase (Peptidase family M16) SPS_RS09530 PF05193 Peptidase M16 inactive domain SPS_RS09540 PF00535 Glycosyl transferase family 2 SPS_RS09545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SPS_RS09545 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SPS_RS09545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SPS_RS09550 PF00483 Nucleotidyl transferase SPS_RS09560 PF02463 RecF/RecN/SMC N terminal domain SPS_RS09565 PF06800 Sugar transport protein SPS_RS09570 PF00478 IMP dehydrogenase / GMP reductase domain SPS_RS09570 PF00571 CBS domain SPS_RS09575 PF00579 tRNA synthetases class I (W and Y) SPS_RS09585 PF00005 ABC transporter SPS_RS09585 PF12848 ABC transporter SPS_RS09605 PF13936 Helix-turn-helix domain SPS_RS09615 PF02590 Predicted SPOUT methyltransferase SPS_RS09620 PF13180 PDZ domain SPS_RS09625 PF17762 HTH domain found in ParB protein SPS_RS09625 PF02195 ParB-like nuclease domain