SPS_RS00005	SM00382	ATPases associated with a variety of cellular activities
SPS_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
SPS_RS00010	SM00480	DNA polymerase III beta subunit
SPS_RS00030	SM00487	DEAD-like helicases superfamily
SPS_RS00030	SM00490	helicase superfamily c-terminal domain
SPS_RS00030	SM00982	SPS_RS00030
SPS_RS00030	SM01058	CarD-like/TRCF domain
SPS_RS00035	SM00363	S4 RNA-binding domain
SPS_RS00060	SM00382	ATPases associated with a variety of cellular activities
SPS_RS00180	SM01400	SPS_RS00180
SPS_RS00205	SM01211	SPS_RS00205
SPS_RS00225	SM00798	AICARFT/IMPCHase bienzyme
SPS_RS00225	SM00851	MGS-like domain
SPS_RS00235	SM01209	SPS_RS00235
SPS_RS00235	SM01210	SPS_RS00235
SPS_RS00240	SM01001	AIR carboxylase
SPS_RS00255	SM00998	Adenylosuccinate lyase C-terminus
SPS_RS00260	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS00265	SM00382	ATPases associated with a variety of cellular activities
SPS_RS00270	SM00226	Low molecular weight phosphatase family
SPS_RS00275	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
SPS_RS00290	SM00829	Enoylreductase
SPS_RS00300	SM01403	SPS_RS00300
SPS_RS00320	SM01382	SPS_RS00320
SPS_RS00320	SM01383	SPS_RS00320
SPS_RS00335	SM00322	K homology RNA-binding domain
SPS_RS00355	SM01374	SPS_RS00355
SPS_RS00360	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SPS_RS00415	SM00316	Ribosomal protein S1-like RNA-binding domain
SPS_RS00430	SM00662	RNA polymerases D
SPS_RS00535	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPS_RS00540	SM00382	ATPases associated with a variety of cellular activities
SPS_RS00555	SM00363	S4 RNA-binding domain
SPS_RS00570	SM00663	RNA polymerase I subunit A N-terminus
SPS_RS00710	SM00342	helix_turn_helix, arabinose operon control protein
SPS_RS00740	SM00882	Coenzyme A transferase
SPS_RS00745	SM00882	Coenzyme A transferase
SPS_RS00820	SM00788	Adenylosuccinate synthetase
SPS_RS00830	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
SPS_RS00830	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SPS_RS00885	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
SPS_RS00895	SM01007	Class II Aldolase and Adducin N-terminal domain
SPS_RS00910	SM00382	ATPases associated with a variety of cellular activities
SPS_RS00920	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
SPS_RS00920	SM00474	3'-5' exonuclease
SPS_RS00920	SM00475	5'-3' exonuclease
SPS_RS00920	SM00482	DNA polymerase A domain
SPS_RS00925	SM00881	CoA binding domain
SPS_RS00955	SM00849	Metallo-beta-lactamase superfamily
SPS_RS00965	SM00460	Transglutaminase/protease-like homologues
SPS_RS01005	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPS_RS01010	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01015	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01030	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01035	SM00947	Carbonic anhydrase
SPS_RS01060	SM00448	cheY-homologous receiver domain
SPS_RS01060	SM00850	LytTr DNA-binding domain
SPS_RS01075	SM00393	Putative single-stranded nucleic acids-binding domain
SPS_RS01075	SM01245	SPS_RS01075
SPS_RS01115	SM01130	SPS_RS01115
SPS_RS01140	SM00650	Ribosomal RNA adenine dimethylases
SPS_RS01155	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
SPS_RS01190	SM00838	Elongation factor G C-terminus
SPS_RS01190	SM00889	Elongation factor G, domain IV
SPS_RS01195	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
SPS_RS01200	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01205	SM00062	Bacterial periplasmic substrate-binding proteins
SPS_RS01230	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01260	SM00936	Penicillin-binding protein 5, C-terminal domain 
SPS_RS01280	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01285	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01395	SM01120	SPS_RS01395
SPS_RS01395	SM01121	SPS_RS01395
SPS_RS01400	SM00244	prohibitin homologues
SPS_RS01420	SM00422	helix_turn_helix, mercury resistance
SPS_RS01425	SM01230	SPS_RS01425
SPS_RS01430	SM00849	Metallo-beta-lactamase superfamily
SPS_RS01460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS01475	SM01133	SPS_RS01475
SPS_RS01495	SM00422	helix_turn_helix, mercury resistance
SPS_RS01505	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS01510	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS01515	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
SPS_RS01515	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
SPS_RS01520	SM00419	helix_turn_helix, cAMP Regulatory protein
SPS_RS01565	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01590	SM00463	Small MutS-related domain
SPS_RS01590	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
SPS_RS01590	SM00534	ATPase domain of DNA mismatch repair MUTS family
SPS_RS01595	SM00014	Acid phosphatase homologues
SPS_RS01605	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS01610	SM00478	endonuclease III
SPS_RS01645	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01660	SM00841	Elongation factor P, C-terminal
SPS_RS01660	SM01185	SPS_RS01660
SPS_RS01675	SM00354	helix_turn _helix lactose operon repressor
SPS_RS01680	SM00640	Glycosyl hydrolases family 32
SPS_RS01705	SM00957	SecA DEAD-like domain
SPS_RS01705	SM00958	SecA preprotein cross-linking domain
SPS_RS01715	SM01005	Alanine racemase, C-terminal domain
SPS_RS01725	SM00365	Leucine-rich repeat, SDS22-like subfamily
SPS_RS01725	SM00369	Leucine-rich repeats, typical (most populated) subfamily
SPS_RS01725	SM00725	NEAr Transporter domain
SPS_RS01745	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01750	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01755	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01770	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01775	SM00487	DEAD-like helicases superfamily
SPS_RS01775	SM00490	helicase superfamily c-terminal domain
SPS_RS01780	SM00382	ATPases associated with a variety of cellular activities
SPS_RS01790	SM00870	SPS_RS01790
SPS_RS01835	SM00845	GatB domain
SPS_RS01850	SM00855	Phosphoglycerate mutase family
SPS_RS01860	SM00047	Lysozyme subfamily 2
SPS_RS01880	SM00271	DnaJ molecular chaperone homology domain
SPS_RS01890	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPS_RS01910	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
SPS_RS01915	SM00822	SPS_RS01915
SPS_RS01920	SM00825	Beta-ketoacyl synthase
SPS_RS01935	SM00878	Biotin carboxylase C-terminal domain
SPS_RS02020	SM00382	ATPases associated with a variety of cellular activities
SPS_RS02050	SM00322	K homology RNA-binding domain
SPS_RS02095	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPS_RS02095	SM01134	SPS_RS02095
SPS_RS02130	SM01133	SPS_RS02130
SPS_RS02230	SM00861	Transketolase, pyrimidine binding domain
SPS_RS02240	SM00382	ATPases associated with a variety of cellular activities
SPS_RS02265	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS02315	SM00482	DNA polymerase A domain
SPS_RS02320	SM00885	D5 N terminal like
SPS_RS02325	SM00990	SPS_RS02325
SPS_RS02330	SM00487	DEAD-like helicases superfamily
SPS_RS02470	SM00047	Lysozyme subfamily 2
SPS_RS02480	SM00892	DNA/RNA non-specific endonuclease
SPS_RS02515	SM00740	SPS_RS02515
SPS_RS02525	SM00487	DEAD-like helicases superfamily
SPS_RS02525	SM00490	helicase superfamily c-terminal domain
SPS_RS02535	SM00382	ATPases associated with a variety of cellular activities
SPS_RS02590	SM00981	SPS_RS02590
SPS_RS02615	SM00882	Coenzyme A transferase
SPS_RS02620	SM00882	Coenzyme A transferase
SPS_RS02635	SM00322	K homology RNA-binding domain
SPS_RS02635	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPS_RS02640	SM00072	Guanylate kinase homologues.
SPS_RS02645	SM01409	SPS_RS02645
SPS_RS02650	SM00487	DEAD-like helicases superfamily
SPS_RS02650	SM00490	helicase superfamily c-terminal domain
SPS_RS02665	SM00331	Sigma factor PP2C-like phosphatases
SPS_RS02665	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
SPS_RS02670	SM00220	Serine/Threonine protein kinases, catalytic domain
SPS_RS02670	SM00740	SPS_RS02670
SPS_RS02680	SM00387	Histidine kinase-like ATPases
SPS_RS02685	SM00421	helix_turn_helix, Lux Regulon
SPS_RS02685	SM00448	cheY-homologous receiver domain
SPS_RS02695	SM00316	Ribosomal protein S1-like RNA-binding domain
SPS_RS02810	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS02815	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS02825	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS02845	SM00490	helicase superfamily c-terminal domain
SPS_RS02855	SM00942	Primase C terminal 1 (PriCT-1)
SPS_RS02855	SM00943	Bifunctional DNA primase/polymerase, N-terminal
SPS_RS02870	SM00990	SPS_RS02870
SPS_RS03010	SM00047	Lysozyme subfamily 2
SPS_RS03080	SM00872	Alpha mannosidase, middle domain
SPS_RS03085	SM01149	SPS_RS03085
SPS_RS03090	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS03130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPS_RS03135	SM00342	helix_turn_helix, arabinose operon control protein
SPS_RS03135	SM00448	cheY-homologous receiver domain
SPS_RS03250	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS03360	SM00470	ParB-like nuclease domain
SPS_RS03365	SM00382	ATPases associated with a variety of cellular activities
SPS_RS03375	SM01022	SPS_RS03375
SPS_RS03505	SM00047	Lysozyme subfamily 2
SPS_RS03540	SM00342	helix_turn_helix, arabinose operon control protein
SPS_RS03540	SM00448	cheY-homologous receiver domain
SPS_RS03545	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPS_RS03545	SM00387	Histidine kinase-like ATPases
SPS_RS03555	SM00873	B3/4 domain
SPS_RS03565	SM00419	helix_turn_helix, cAMP Regulatory protein
SPS_RS03620	SM00354	helix_turn _helix lactose operon repressor
SPS_RS03655	SM00450	Rhodanese Homology Domain
SPS_RS03660	SM00838	Elongation factor G C-terminus
SPS_RS03685	SM00842	Cell division protein FtsA
SPS_RS03690	SM00864	Tubulin/FtsZ family, GTPase domain
SPS_RS03690	SM00865	Tubulin/FtsZ family, C-terminal domain
SPS_RS03710	SM00363	S4 RNA-binding domain
SPS_RS03735	SM00382	ATPases associated with a variety of cellular activities
SPS_RS03735	SM01086	C-terminal, D2-small domain, of ClpB protein
SPS_RS03750	SM00382	ATPases associated with a variety of cellular activities
SPS_RS03785	SM00363	S4 RNA-binding domain
SPS_RS03820	SM00411	bacterial (prokaryotic) histone like domain
SPS_RS03830	SM00910	SPS_RS03830
SPS_RS03835	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS03840	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS03930	SM00507	HNH nucleases
SPS_RS04065	SM00047	Lysozyme subfamily 2
SPS_RS04065	SM01095	Cpl-7 lysozyme C-terminal domain
SPS_RS04070	SM00892	DNA/RNA non-specific endonuclease
SPS_RS04090	SM00855	Phosphoglycerate mutase family
SPS_RS04115	SM00493	SPS_RS04115
SPS_RS04140	SM00487	DEAD-like helicases superfamily
SPS_RS04140	SM00490	helicase superfamily c-terminal domain
SPS_RS04160	SM00563	Phosphate acyltransferases
SPS_RS04165	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPS_RS04170	SM00849	Metallo-beta-lactamase superfamily
SPS_RS04215	SM00363	S4 RNA-binding domain
SPS_RS04245	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SPS_RS04250	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS04320	SM00487	DEAD-like helicases superfamily
SPS_RS04320	SM00490	helicase superfamily c-terminal domain
SPS_RS04345	SM00382	ATPases associated with a variety of cellular activities
SPS_RS04355	SM00364	Leucine-rich repeats, bacterial type
SPS_RS04355	SM00365	Leucine-rich repeat, SDS22-like subfamily
SPS_RS04355	SM00369	Leucine-rich repeats, typical (most populated) subfamily
SPS_RS04380	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPS_RS04440	SM00363	S4 RNA-binding domain
SPS_RS04530	SM00382	ATPases associated with a variety of cellular activities
SPS_RS04535	SM00062	Bacterial periplasmic substrate-binding proteins
SPS_RS04535	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
SPS_RS04540	SM00487	DEAD-like helicases superfamily
SPS_RS04540	SM00490	helicase superfamily c-terminal domain
SPS_RS04600	SM00354	helix_turn _helix lactose operon repressor
SPS_RS04630	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS04650	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS04670	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS04680	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS04700	SM00490	helicase superfamily c-terminal domain
SPS_RS04710	SM00942	Primase C terminal 1 (PriCT-1)
SPS_RS04710	SM00943	Bifunctional DNA primase/polymerase, N-terminal
SPS_RS04730	SM00990	SPS_RS04730
SPS_RS04770	SM00507	HNH nucleases
SPS_RS04890	SM00047	Lysozyme subfamily 2
SPS_RS04910	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS04925	SM00838	Elongation factor G C-terminus
SPS_RS04970	SM00342	helix_turn_helix, arabinose operon control protein
SPS_RS04970	SM00448	cheY-homologous receiver domain
SPS_RS04985	SM00465	GIY-YIG type nucleases (URI domain)
SPS_RS05015	SM00936	Penicillin-binding protein 5, C-terminal domain 
SPS_RS05040	SM00905	Dihydroneopterin aldolase
SPS_RS05055	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05075	SM00448	cheY-homologous receiver domain
SPS_RS05090	SM00919	Malic enzyme, NAD binding domain
SPS_RS05090	SM01274	SPS_RS05090
SPS_RS05095	SM00829	Enoylreductase
SPS_RS05130	SM00881	CoA binding domain
SPS_RS05145	SM01400	SPS_RS05145
SPS_RS05150	SM01118	SPS_RS05150
SPS_RS05155	SM00954	Region found in RelA / SpoT proteins
SPS_RS05185	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05195	SM01240	SPS_RS05195
SPS_RS05225	SM00937	SPS_RS05225
SPS_RS05260	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05265	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05280	SM00434	DNA Topoisomerase IV
SPS_RS05300	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SPS_RS05330	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
SPS_RS05330	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
SPS_RS05330	SM00493	SPS_RS05330
SPS_RS05365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS05365	SM00895	SPS_RS05365
SPS_RS05420	SM00764	Citrate lyase ligase C-terminal domain
SPS_RS05435	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS05440	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05440	SM00962	SRP54-type protein, GTPase domain
SPS_RS05440	SM00963	SRP54-type protein, helical bundle domain
SPS_RS05450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS05450	SM00866	SPS_RS05450
SPS_RS05470	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05485	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS05495	SM00155	Phospholipase D. Active site motifs.
SPS_RS05515	SM00506	Appr-1"-p processing enzyme
SPS_RS05570	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05600	SM00387	Histidine kinase-like ATPases
SPS_RS05600	SM00388	His Kinase A (phosphoacceptor) domain
SPS_RS05605	SM00448	cheY-homologous receiver domain
SPS_RS05605	SM00862	Transcriptional regulatory protein, C terminal
SPS_RS05620	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05625	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05665	SM00904	Riboflavin kinase
SPS_RS05695	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS05760	SM00062	Bacterial periplasmic substrate-binding proteins
SPS_RS05765	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05800	SM00481	DNA polymerase alpha chain like domain
SPS_RS05805	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS05810	SM00382	ATPases associated with a variety of cellular activities
SPS_RS05840	SM00047	Lysozyme subfamily 2
SPS_RS05840	SM00287	Bacterial SH3 domain homologues
SPS_RS05960	SM00507	HNH nucleases
SPS_RS05990	SM00244	prohibitin homologues
SPS_RS05995	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS06070	SM01040	BRO family, N-terminal domain
SPS_RS06080	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS06090	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS06145	SM00729	Elongator protein 3, MiaB family, Radical SAM
SPS_RS06205	SM00861	Transketolase, pyrimidine binding domain
SPS_RS06215	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06230	SM00849	Metallo-beta-lactamase superfamily
SPS_RS06235	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06260	SM00028	Tetratricopeptide repeats
SPS_RS06305	SM00478	endonuclease III
SPS_RS06305	SM00525	SPS_RS06305
SPS_RS06360	SM00450	Rhodanese Homology Domain
SPS_RS06375	SM00316	Ribosomal protein S1-like RNA-binding domain
SPS_RS06400	SM00434	DNA Topoisomerase IV
SPS_RS06405	SM00387	Histidine kinase-like ATPases
SPS_RS06405	SM00433	TopoisomeraseII
SPS_RS06410	SM01207	SPS_RS06410
SPS_RS06420	SM00986	Uracil DNA glycosylase superfamily
SPS_RS06420	SM00987	UreE urease accessory protein, C-terminal domain 
SPS_RS06430	SM00062	Bacterial periplasmic substrate-binding proteins
SPS_RS06445	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
SPS_RS06490	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06490	SM01086	C-terminal, D2-small domain, of ClpB protein
SPS_RS06505	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06505	SM00994	ClpX C4-type zinc finger
SPS_RS06505	SM01086	C-terminal, D2-small domain, of ClpB protein
SPS_RS06555	SM00387	Histidine kinase-like ATPases
SPS_RS06555	SM00388	His Kinase A (phosphoacceptor) domain
SPS_RS06560	SM00448	cheY-homologous receiver domain
SPS_RS06560	SM00862	Transcriptional regulatory protein, C terminal
SPS_RS06565	SM00954	Region found in RelA / SpoT proteins
SPS_RS06585	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06620	SM00047	Lysozyme subfamily 2
SPS_RS06625	SM00047	Lysozyme subfamily 2
SPS_RS06640	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPS_RS06640	SM01134	SPS_RS06640
SPS_RS06710	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06720	SM00851	MGS-like domain
SPS_RS06720	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
SPS_RS06720	SM01209	SPS_RS06720
SPS_RS06725	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
SPS_RS06745	SM00363	S4 RNA-binding domain
SPS_RS06775	SM00854	Bacterial capsule synthesis protein PGA_cap
SPS_RS06780	SM00981	SPS_RS06780
SPS_RS06900	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06935	SM00400	zinc finger
SPS_RS06935	SM00493	SPS_RS06935
SPS_RS06950	SM00062	Bacterial periplasmic substrate-binding proteins
SPS_RS06950	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
SPS_RS06970	SM00382	ATPases associated with a variety of cellular activities
SPS_RS06990	SM00873	B3/4 domain
SPS_RS06990	SM00874	tRNA synthetase B5 domain
SPS_RS06990	SM00896	Ferredoxin-fold anticodon binding domain
SPS_RS07025	SM00382	ATPases associated with a variety of cellular activities
SPS_RS07060	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SPS_RS07065	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPS_RS07065	SM00292	breast cancer carboxy-terminal domain
SPS_RS07065	SM00532	Ligase N family
SPS_RS07090	SM00382	ATPases associated with a variety of cellular activities
SPS_RS07125	SM01192	SPS_RS07125
SPS_RS07125	SM01193	SPS_RS07125
SPS_RS07140	SM00387	Histidine kinase-like ATPases
SPS_RS07140	SM00433	TopoisomeraseII
SPS_RS07165	SM00830	Chorismate mutase type II
SPS_RS07190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS07190	SM00866	SPS_RS07190
SPS_RS07230	SM00479	SPS_RS07230
SPS_RS07230	SM00487	DEAD-like helicases superfamily
SPS_RS07230	SM00491	SPS_RS07230
SPS_RS07250	SM00382	ATPases associated with a variety of cellular activities
SPS_RS07255	SM00937	SPS_RS07255
SPS_RS07320	SM00354	helix_turn _helix lactose operon repressor
SPS_RS07325	SM00831	Cation transporter/ATPase, N-terminus
SPS_RS07335	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPS_RS07415	SM00855	Phosphoglycerate mutase family
SPS_RS07480	SM00731	SprT homologues.
SPS_RS07485	SM00316	Ribosomal protein S1-like RNA-binding domain
SPS_RS07485	SM00732	Likely ribonuclease with RNase H fold.
SPS_RS07515	SM01061	CAT RNA binding domain
SPS_RS07525	SM00382	ATPases associated with a variety of cellular activities
SPS_RS07525	SM00962	SRP54-type protein, GTPase domain
SPS_RS07525	SM00963	SRP54-type protein, helical bundle domain
SPS_RS07605	SM00984	UDP binding domain
SPS_RS07655	SM00968	SMC proteins Flexible Hinge Domain
SPS_RS07660	SM00358	Double-stranded RNA binding motif
SPS_RS07660	SM00535	Ribonuclease III family
SPS_RS07665	SM00849	Metallo-beta-lactamase superfamily
SPS_RS07670	SM00091	PAS domain
SPS_RS07670	SM00387	Histidine kinase-like ATPases
SPS_RS07670	SM00388	His Kinase A (phosphoacceptor) domain
SPS_RS07675	SM00448	cheY-homologous receiver domain
SPS_RS07675	SM00862	Transcriptional regulatory protein, C terminal
SPS_RS07710	SM00382	ATPases associated with a variety of cellular activities
SPS_RS07715	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SPS_RS07730	SM00354	helix_turn _helix lactose operon repressor
SPS_RS07780	SM00316	Ribosomal protein S1-like RNA-binding domain
SPS_RS07780	SM00955	SPS_RS07780
SPS_RS07805	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
SPS_RS07805	SM01232	SPS_RS07805
SPS_RS07810	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS07885	SM00986	Uracil DNA glycosylase superfamily
SPS_RS07885	SM00987	UreE urease accessory protein, C-terminal domain 
SPS_RS07900	SM00257	Lysin motif
SPS_RS07935	SM00649	Ribosomal protein L11/L12
SPS_RS07945	SM00382	ATPases associated with a variety of cellular activities
SPS_RS07945	SM00843	SPS_RS07945
SPS_RS07960	SM00382	ATPases associated with a variety of cellular activities
SPS_RS07970	SM00529	Helix-turn-helix diphteria tox regulatory element
SPS_RS07970	SM00899	SPS_RS07970
SPS_RS08155	SM00382	ATPases associated with a variety of cellular activities
SPS_RS08180	SM01131	SPS_RS08180
SPS_RS08190	SM01091	Transporter associated domain
SPS_RS08200	SM00729	Elongator protein 3, MiaB family, Radical SAM
SPS_RS08205	SM00014	Acid phosphatase homologues
SPS_RS08220	SM01234	SPS_RS08220
SPS_RS08225	SM00363	S4 RNA-binding domain
SPS_RS08245	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPS_RS08280	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SPS_RS08320	SM00487	DEAD-like helicases superfamily
SPS_RS08320	SM00490	helicase superfamily c-terminal domain
SPS_RS08345	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPS_RS08345	SM00387	Histidine kinase-like ATPases
SPS_RS08345	SM00388	His Kinase A (phosphoacceptor) domain
SPS_RS08350	SM00448	cheY-homologous receiver domain
SPS_RS08350	SM00862	Transcriptional regulatory protein, C terminal
SPS_RS08400	SM00382	ATPases associated with a variety of cellular activities
SPS_RS08400	SM00930	SPS_RS08400
SPS_RS08410	SM00062	Bacterial periplasmic substrate-binding proteins
SPS_RS08435	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPS_RS08445	SM01103	SPS_RS08445
SPS_RS08510	SM00487	DEAD-like helicases superfamily
SPS_RS08525	SM00421	helix_turn_helix, Lux Regulon
SPS_RS08525	SM00448	cheY-homologous receiver domain
SPS_RS08540	SM00382	ATPases associated with a variety of cellular activities
SPS_RS08555	SM01260	SPS_RS08555
SPS_RS08580	SM01133	SPS_RS08580
SPS_RS08600	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPS_RS08600	SM01134	SPS_RS08600
SPS_RS08630	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS08650	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SPS_RS08665	SM00840	SPS_RS08665
SPS_RS08685	SM00316	Ribosomal protein S1-like RNA-binding domain
SPS_RS08685	SM00322	K homology RNA-binding domain
SPS_RS08710	SM01387	SPS_RS08710
SPS_RS08735	SM00347	helix_turn_helix multiple antibiotic resistance protein
SPS_RS08740	SM00479	SPS_RS08740
SPS_RS08740	SM00481	DNA polymerase alpha chain like domain
SPS_RS08765	SM01323	SPS_RS08765
SPS_RS08775	SM00642	Alpha-amylase domain
SPS_RS08780	SM00642	Alpha-amylase domain
SPS_RS08785	SM00382	ATPases associated with a variety of cellular activities
SPS_RS08805	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SPS_RS08805	SM00954	Region found in RelA / SpoT proteins
SPS_RS08865	SM00382	ATPases associated with a variety of cellular activities
SPS_RS08900	SM00382	ATPases associated with a variety of cellular activities
SPS_RS08905	SM00382	ATPases associated with a variety of cellular activities
SPS_RS08950	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SPS_RS08950	SM00387	Histidine kinase-like ATPases
SPS_RS08950	SM00388	His Kinase A (phosphoacceptor) domain
SPS_RS08955	SM00448	cheY-homologous receiver domain
SPS_RS08955	SM00862	Transcriptional regulatory protein, C terminal
SPS_RS08965	SM00382	ATPases associated with a variety of cellular activities
SPS_RS09010	SM00892	DNA/RNA non-specific endonuclease
SPS_RS09055	SM00420	helix_turn_helix, Deoxyribose operon repressor
SPS_RS09055	SM01134	SPS_RS09055
SPS_RS09110	SM00530	Helix-turn-helix XRE-family like proteins 
SPS_RS09120	SM00883	Chaperonin 10 Kd subunit
SPS_RS09125	SM00382	ATPases associated with a variety of cellular activities
SPS_RS09125	SM01086	C-terminal, D2-small domain, of ClpB protein
SPS_RS09135	SM00357	Cold shock protein domain
SPS_RS09165	SM01221	SPS_RS09165
SPS_RS09165	SM01222	SPS_RS09165
SPS_RS09200	SM00028	Tetratricopeptide repeats
SPS_RS09200	SM01043	Bacterial transcriptional activator domain
SPS_RS09220	SM00642	Alpha-amylase domain
SPS_RS09230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SPS_RS09230	SM00866	SPS_RS09230
SPS_RS09280	SM00732	Likely ribonuclease with RNase H fold.
SPS_RS09295	SM00382	ATPases associated with a variety of cellular activities
SPS_RS09300	SM00852	Probable molybdopterin binding domain
SPS_RS09310	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SPS_RS09320	SM00853	MutL C terminal dimerisation domain
SPS_RS09320	SM01340	SPS_RS09320
SPS_RS09325	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
SPS_RS09325	SM00534	ATPase domain of DNA mismatch repair MUTS family
SPS_RS09340	SM00836	DALR anticodon binding domain
SPS_RS09340	SM01016	Arginyl tRNA synthetase N terminal dom
SPS_RS09390	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SPS_RS09450	SM00363	S4 RNA-binding domain
SPS_RS09450	SM01390	SPS_RS09450
SPS_RS09475	SM01228	SPS_RS09475
SPS_RS09510	SM00382	ATPases associated with a variety of cellular activities
SPS_RS09515	SM00382	ATPases associated with a variety of cellular activities
SPS_RS09545	SM00984	UDP binding domain
SPS_RS09570	SM00116	Domain in cystathionine beta-synthase and other proteins.
SPS_RS09570	SM01240	SPS_RS09570
SPS_RS09585	SM00382	ATPases associated with a variety of cellular activities
SPS_RS09620	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SPS_RS09625	SM00470	ParB-like nuclease domain
