JHX98_RS00015    3056 ..    3068 +  -4.1   -3.6053   ACAATGACGAAAGTT                GTAGC ACA GTTAC                TTAGTTTCTCGGCAA  55 162
        ychF    4387 ..    4407 +  -7.6  -3.16106   AAAACAATATCAGAA            GGTTGGAA GAACA TTCCAGCC            CTTTTGGCATTTTAG  67 48
JHX98_RS00025 NONE
         mfd NONE
JHX98_RS00035 NONE
JHX98_RS00040 NONE
JHX98_RS00045 NONE
        tilS NONE
         hpt NONE
        ftsH   14563 ..   14587 + -11.6  -5.24129   GAATGATATAAAAAA          GCTGAACTTA TAGAT TAAGTTCAGC          TTTTTTATAAACACA 100 35
JHX98_RS00065   16385 ..   16413 + -11.8  -3.34013   TTTAAAATTACCCAA        CCCCTAGAGAAT TGATT AGTCTCTAGGGG        TTGATTGGCACAATG  90 140
JHX98_RS00070   18428 ..   18441 +  -2.3  -3.06796   TATTTAGTTTTGAGA               GGTCT TGTG GGGCC                TTAGCTCAGCTGGGA  42 69
JHX98_RS00075   18582 ..   18614 +  -9.1   -3.3972   TAGGAAAATAGACAA      TCTTCCCTTGTGTGC AAG GCACACATGGTCAGA      TTCCTAATTTTCTAC  79 97
JHX98_RS00080 NONE
         rrf NONE
JHX98_RS00090 NONE
JHX98_RS00095 NONE
JHX98_RS00100 NONE
JHX98_RS00105 NONE
JHX98_RS00110 NONE
JHX98_RS00115 NONE
JHX98_RS00120 NONE
JHX98_RS00125 NONE
JHX98_RS00130   22688 ..   22702 +  -4.2  -3.06261   GGGACCAAGGTGTCG               CAGGTT CGA ATCCTG               TCTTCCCGATTAGAA  50 1
JHX98_RS00135   24429 ..   24442 +  -2.3  -3.06796   TATTTAGTTTTGAGA               GGTCT TGTG GGGCC                TTAGCTCAGCTGGGA  42 69
JHX98_RS00140   24583 ..   24615 +  -9.1   -3.3972   TAGGAAAATAGACAA      TCTTCCCTTGTGTGC AAG GCACACATGGTCAGA      TTCCTAATTTTCTAC  79 97
JHX98_RS00145 NONE
         rrf NONE
JHX98_RS00155 NONE
JHX98_RS00160 NONE
JHX98_RS00165 NONE
JHX98_RS00170 NONE
JHX98_RS00175 NONE
JHX98_RS00180 NONE
JHX98_RS00185 NONE
JHX98_RS00190 NONE
JHX98_RS00195   28689 ..   28703 +  -4.2  -3.06737   GGGACCAAGGTGTCG               CAGGTT CGA ATCCTG               TCTTCCCGATTAATG  50 1
JHX98_RS00200 NONE
JHX98_RS00205 NONE
JHX98_RS00210 NONE
JHX98_RS00215   29081 ..   29094 +  -3.9   -2.8082   ATCCTGCTCCCGCAA               TACAT AAGT ATGTA                GTTGTTGGCTCGGTA  46 25
JHX98_RS00220 NONE
JHX98_RS00225   29288 ..   29306 +  -4.5  -2.70932   CTATATCAATAAAAG             CTTGGGC GCGTA GCTCAGG             TGGTTAGAGCGCACG  47 53
JHX98_RS00230   29342 ..   29363 +  -2.1  -2.50821   TAAGCGTGAGGTCGG           TGGTTCGAG TCCA CTCGTGCCC            ATATATATTTGGAGA  39 2
JHX98_RS00235   29516 ..   29528 +  -5.5  -5.70829   TATTAGGGGAAAGAA                GACGG TTA TCGTC                TTTTTTTGTAATCTT  86 80
JHX98_RS00240   32034 ..   32055 + -11.7  -5.00339   CTAACATATTATTTA           GGTTAGAAC AGTT GTTCTAACC            TTTTTGATTATTCCT 100 37
JHX98_RS00245   33248 ..   33270 +  -9.9  -4.75174   ATTAAGCTTAACGAA           GCCTGAGAT AATAG ATCTCGGGC           TTTTTGACTTGAATA 100 36
        recO   34477 ..   34494 +  -4.9  -5.82316   ATGCGTGAGTATGTC             TAAATCC ATGA GGGTTTA              TTTTTTTTAGATGAT 100 324
JHX98_RS00275 NONE
JHX98_RS00280 NONE
JHX98_RS00285 NONE
JHX98_RS00290 NONE
JHX98_RS00300 NONE
JHX98_RS00305 NONE
JHX98_RS00310 NONE
JHX98_RS00315 NONE
JHX98_RS00320   41560 ..   41582 +  -9.9  -3.33744   CGATATTTTATAGCA          GAGG-GCCTC TTTA GAGGCTCCTC           ATTTTTAAAGGAGAG  81 28
JHX98_RS00325 NONE
JHX98_RS00330   45943 ..   45955 +  -2.7  -3.13164   GGTTGAGTTGTGATT                TCAAA AAT TTTGG                TTACGTAGTTACGCA  43 57
JHX98_RS00335 NONE
JHX98_RS00340 NONE
JHX98_RS00345 NONE
JHX98_RS00350   48361 ..   48387 +  -4.4  -3.53012   GACTTGATGTGGATG         TGTTCTGGTGGA AAA TCCAGTCGAACA         TTTAAAGCGGAGAGG  55 79
JHX98_RS00355   48915 ..   48937 +  -6.3  -4.84274   TAGTATGAGTTTGAA           GGTAAGGCA GATAG TGTCTTGCC           TTTTTGCTATGCTTG  83 84
JHX98_RS00360 NONE
JHX98_RS00365 NONE
JHX98_RS00370 NONE
JHX98_RS00375 NONE
JHX98_RS00380 NONE
JHX98_RS00385   54154 ..   54169 +  -5.4  -5.24796   CAAATCTAAACCAAA              GTCGTA GCAA TACGGC               TTTTTATTGTGTCCA  82 71
JHX98_RS00390 NONE
JHX98_RS00395   55721 ..   55734 +  -4.5  -3.27298   AACAATCGAAGCTGC               TGCTG TACC CGGCA                TTGGTGGTTAAAGGC  51 1
JHX98_RS00400 NONE
JHX98_RS00405 NONE
JHX98_RS00410 NONE
JHX98_RS00415 NONE
JHX98_RS00420   57723 ..   57744 +  -2.1  -4.54727   CACTAAATAGCACAC           AGGGGTGGC AACT GATACCCCA            TTTTGATTTAAAAAG  59 31
JHX98_RS00425 NONE
JHX98_RS00430 NONE
JHX98_RS00435 NONE
JHX98_RS00440 NONE
JHX98_RS00445 NONE
JHX98_RS00450 NONE
JHX98_RS00455 NONE
JHX98_RS00460 NONE
JHX98_RS00465 NONE
JHX98_RS00470 NONE
JHX98_RS00475 NONE
JHX98_RS00480   71756 ..   71777 +  -9.4  -5.10064   TTAGATAAGACAAAA           CCGCTCTC TTAATC GAGGGCGG            TTTTTGTGTCTTAAA 100 91
JHX98_RS00485   72588 ..   72610 + -11.3  -5.76633   GAAATAAAAAACCAA           CCGCTCAGA TTATT TCTGGGCGG           TTTTTTTGTGTCTAA 100 86
JHX98_RS00495 NONE
        plsX NONE
JHX98_RS00505   75527 ..   75562 +   -18  -3.53091   CGTTTGACTTAGTTA    GAATAATAAAAAGAGC GTAA GCTCTTTTTATTATTC     TTTAAAAACGAACCT 100 29
JHX98_RS00515   80359 ..   80369 +    -4  -4.43012   TTGAAAATAGCTTGA                 TAGA TTT TCTA                 TTTTGATGTTGGCAT  62 156
JHX98_RS00520 NONE
JHX98_RS00525   83087 ..   83097 +    -4  -4.56597   GTTCGTTTTCCTATT                 TTTC TAC GAAA                 TTTTTCGGCAAGCCG  65 146
        purN   84081 ..   84107 +  -8.6  -3.01791   CCTCCATCCAAACAT         TCACGGTGGGCT TTT GGCCCGTCGCGA         TGTTGACAGCCACCT  71 418
        purD   88349 ..   88361 +  -4.9  -4.08767   GGACTTACCGCATAT                TTTTC TAC GAAAA                TTTTCGACAAATCGA  64 254
        purE NONE
        purK NONE
JHX98_RS00560 NONE
        purB   92693 ..   92708 +  -4.7  -5.63517   TTAATATAAAAAAAA              GAAGG TGATTC CCTTC               TTTTTTATTTAAAAA  86 37
JHX98_RS00570   93734 ..   93751 +  -4.9  -4.73432   TTTAAATAATAATTT             TATGACA TGGA TGTCATG              TTTATTTATATTTAC  72 36
JHX98_RS00575   93939 ..   93952 +  -3.9  -4.10161   TTTATGTTATAATAG               TTCTA TGGC TAGAA                TTTTAGACAATAATG  59 52
        ruvB NONE
JHX98_RS00585 NONE
JHX98_RS00590 NONE
JHX98_RS00595   97819 ..   97840 +  -2.9  -5.51402   GGTTTTTAAAAGAAA           GCGGTTTCG GAAA CAAAACGGC            TTTTTTTAGATATAT  76 132
        adhE  100687 ..  100718 + -12.6  -5.19275   GTTGATACCAGGAAA      TGATTTCTTATGAT TAAA GTCATAAGAAATCA       TTTTATTTTCTAAAT 100 49
        adhP  101993 ..  102037 +   -14  -4.30978   TGATTCCAAATAAAA TAGCACTCTCGAGTATCAGAAA ACA TTTTTG--ACTCGAGAGTGCTA TTTTGATACATTGAA 100 87
JHX98_RS00610  103660 ..  103670 +  -6.8   -2.9953   GGTATGAAAAAAGCA                 CCTC TAA GAGG                 TATACTTGTAGTTCA  59 77
        rpsJ  105298 ..  105308 +    -4  -5.49568   CAGAAGTTTTTGTGT                 TAGA TTT TCTA                 TTTTTATTTTGAGTT  79 129
        rplC NONE
        rplD NONE
JHX98_RS00635 NONE
        rplB  107904 ..  107914 +  -5.4  -4.15222   GAAATAGCGTTACAA                 TAGC TTT GCTA                 TTTATTCCGCCAACT  66 67
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
JHX98_RS00665 NONE
        rpsQ NONE
        rplN NONE
        rplX  110981 ..  110997 +  -5.1  -3.14132   CGTTACAGCAAAAAA              TCAGGCG AAG TGCTTGA              TTAATCACGAAGGAA  52 5
        rplE NONE
JHX98_RS00690  111777 ..  111813 + -10.4  -2.60194   TTGGTAAAAATATGA    CACAAAACTTAATTTG TTCTT CAGATTAAGTCTTGTG    CTTAATTAAAACGGT  78 34
        rpsH NONE
        rplF  113119 ..  113133 +  -4.3  -2.62246   AGTTCAATCGACAAC               TTGTC AATGA GACAA               ATTGATTAAAATTAA  47 88
        rplR NONE
        rpsE NONE
        rpmD  114238 ..  114254 +  -8.1  -2.70932   AATAAGTTATAACTG              TGAAATC TCT GATTTCA              TAATTAAAAACGAGC  66 36
        rplO  114880 ..  114899 +  -5.1  -3.39784   TCAATCGAAGTCATC            TAATGAG GGGATA CTCATTA             TGTTCTTAAAAATAC  55 23
        secY  116210 ..  116226 + -10.9   -4.1922   GCAGAATAGAATACA              GGTTGAC ATT GTCAACC              TTCTATTTTGTTTTT 100 32
JHX98_RS00730  116995 ..  117026 + -10.4  -2.69202   GAACTCAAATAAATT      ATACTAATCTACTT GCAT AAGTAGATTAGTAA       TGATATACTAGTTTA  78 29
        infA NONE
        rpmJ NONE
        rpsM NONE
        rpsK NONE
JHX98_RS00755 NONE
        rplQ  119761 ..  119811 + -12.9  -4.92791   ATTGTTAATATGTAA CGCTTGTTTATGAAAGGTATCTA AGCTA TAGAAACTTTTTATAAGCAGGCG TTTTGTTGTATTATG 100 148
JHX98_RS00765  121286 ..  121297 +    -3  -2.87944   AAAAAGAGTTGACAA                TCTT ATAC AAGA                 TATCGTATACTAATA  44 60
JHX98_RS00770  123135 ..  123148 +  -2.3  -3.06796   TATTTAGTTTTGAGA               GGTCT TGTG GGGCC                TTAGCTCAGCTGGGA  42 69
JHX98_RS00775  123289 ..  123321 +  -9.1   -3.3972   TAGGAAAATAGACAA      TCTTCCCTTGTGTGC AAG GCACACATGGTCAGA      TTCCTAATTTTCTAC  79 97
JHX98_RS00780 NONE
         rrf NONE
JHX98_RS00790  126694 ..  126717 +  -4.6  -3.04415   GGTCAGCGGTTCGAT          CCCGTTAA CTCCCATT TTAGCGGG           TGTAGTTTAGTGGTA  50 10
JHX98_RS00795  126785 ..  126804 +  -4.4  -3.15579   TCTCGTCACCCGCTT            TATAGTTT TCCC AAGCTATA             TTAATAAAAGCTTGG  51 23
JHX98_RS00800  126899 ..  126909 +  -2.6  -3.44586   CGTGCCCATTATCTA                 TAAT TAT ATTA                 TTATGGTCCGTTGGT  47 32
JHX98_RS00805 NONE
JHX98_RS00810 NONE
JHX98_RS00815  127169 ..  127182 +  -3.9   -2.8082   ATCCTGCTCCCGCAA               TACAT AAGT ATGTA                GTTGTTGGCTCGGTA  46 25
JHX98_RS00820  127262 ..  127272 +  -2.6  -3.63744   TTCCGTCTCGCGCCA                 TTAA AAT TTAA                 TATTTTACGGAAAGA  48 24
JHX98_RS00825  127337 ..  127353 +  -4.3  -3.42395   CGCTCCTTCGGGTTC              GGGGGTT CGA ATCCCTC              TCTTTCCATCCTAAA  53 1
JHX98_RS00830 NONE
JHX98_RS00835 NONE
JHX98_RS00840 NONE
JHX98_RS00845  127710 ..  127741 + -10.4  -4.43012   GGCCGCCGGTATACT      TGAAAAACAAGGTT TGTA AACCTTGTTTTTTG       TTTTGATCTTAGGCT 100 30
JHX98_RS00850  129080 ..  129090 +  -3.2  -2.91681   GTGGTTTTGGTTAAA                 CCAG ATT TTGG                 TATCTCGACTTGAAC  44 2
JHX98_RS00855  129427 ..  129440 +  -6.7  -3.44274   TATTTTGTTGGGATT               GCTTC TTTG GAAGC                TTCATGTTATAATTA  62 82
JHX98_RS00860 NONE
JHX98_RS00865 NONE
JHX98_RS00870  131464 ..  131488 + -12.3  -4.57482   TTTTAATAAGAAAAA          TCCTCACATGT TTA ATATGTGAGGA          TTTATTTATAAATGC 100 35
JHX98_RS00885  135674 ..  135710 +  -7.4  -4.15325   CAGTTAGGAAGAACA    GCAGTTAAATCACACT GATAA AGTCAGATTTAGCTGC    TCTTTTTGTGTCTAT  78 112
        rpoB  139429 ..  139439 +  -2.6  -4.03811   ATAAGCAATCAATTC                 TTAT TAA ATAA                 TTATTTACTGGTCTG  53 37
        rpoC  143160 ..  143175 +  -6.8  -5.38951   AATAATCTCATGAAA              GAGTCC TTAG GGGCTC               TTTTTTGTCTGAGTT  85 36
JHX98_RS00900  143696 ..  143722 +  -6.8  -5.95539   CAAAATAAGTTAAAA         GAAAATATCA CTTCTTC TGATATTTTC         TTTTTTTGTTTACGA  95 55
JHX98_RS00905 NONE
JHX98_RS00910 NONE
JHX98_RS00915 NONE
JHX98_RS00920 NONE
JHX98_RS00925 NONE
JHX98_RS00930 NONE
JHX98_RS00935  147371 ..  147385 +  -2.9  -3.43264   CCCAAACAATATAGT               CAATA AATAG TATTG               TTGTCATAAATCCTT  47 20
JHX98_RS00940  148420 ..  148431 +    -3  -5.58179   GGAAACTGAGTAATG                TCAA TTAA TTGA                 TTTTTTGTTATAATA  77 18
JHX98_RS00945  149708 ..  149732 +  -9.4  -5.28826   GTTTTCATAGATTAA          CCAAGTAAGG CAACA CTTTACTTGG          TTTTTTATGAGGTTT 100 51
JHX98_RS00950  150411 ..  150439 +  -2.4  -3.40775   GGACTTTGAGAACTG       GTCTTGAGATTGC TGGC GCTAGC-CAAGAC        TGTTTGAGTAACAAT  45 259
JHX98_RS00965 NONE
JHX98_RS00970 NONE
JHX98_RS00975  153901 ..  153920 +  -6.4  -5.66338   AATGACCAGAAAAAA            GGATTAGG ATCC CCTATTCC             TTTTTTCTTATGTTT  89 74
JHX98_RS00980  154524 ..  154555 +  -3.9  -3.21416   CCTTACGAGTATGAA      CAAAGTTTCAA GTGCTAGATG TTGGAACTTTG       TTCATCATAGGAATC  49 151
JHX98_RS01005 NONE
        lepB NONE
JHX98_RS01015 NONE
        srtB  163153 ..  163163 +  -2.6  -3.04248   ACGAAAGGAGGAGAC                 TTTT GAG AAAA                 TATTGGAAAATGTTA  43 40
JHX98_RS01025  163803 ..  163834 + -11.7  -4.58424   AATGAAACTTATTGA      CATCTCCATAGTC TTGCTT GACTTTGGAGATG       TTTTCTATGCTGATA 100 86
JHX98_RS01035  168188 ..  168210 +  -8.5  -4.85599   GACAATAGCGAAAAA          G-GGTCCACT TGTT AGTGGACCTC           TTTTTCTGGAATCGA  95 55
JHX98_RS01045  170866 ..  170890 +  -2.9  -5.79526   AATAACTACATGAAA         CGCCTG--GGA TTGTT TCCTTCAGGCG         TTTTTTTTAAGGTCT  86 43
JHX98_RS01055 NONE
JHX98_RS01060 NONE
JHX98_RS01065  174764 ..  174798 +  -8.8  -2.73338   ACGAGGGATCAATAA     TTTGACCTATAATATC TTG GATGTTAGAGGTTAAA     ATTTCAACAGCTTCT  65 335
JHX98_RS01075  175798 ..  175812 +  -3.6  -2.56914   GAAGCAGTTATAGTG               TCTTAT GTA ATGAGA               TAGATTGGTGGAATA  45 28
JHX98_RS01080  176887 ..  176897 +  -5.4  -3.37236   CTTTTAACACGATAG                 CAGT TAT ACTG                 TTATCACATTGGCTT  57 61
JHX98_RS01085 NONE
JHX98_RS01090 NONE
JHX98_RS01095  180090 ..  180109 +  -6.5  -2.74605   TCTTAAATAAAATTG            GATAAGG TATGGT CCTTATC             TAGATTTTAAAAAAC  57 21
JHX98_RS01100 NONE
JHX98_RS01105 NONE
JHX98_RS01110 NONE
JHX98_RS01115 NONE
JHX98_RS01120  185452 ..  185462 +    -4  -2.78712   ACGATGACAAAGGTT                 TTTG TTG CAAA                 TGATTGAGTTGACCA  46 8
JHX98_RS01125  186191 ..  186228 +  -5.6  -4.66609   TTAAGTAGTAAAAAA   GCAAGCCATCA-AAGGG ATTAA CCTAACTGATGGCTTGC   TTTTTAAGTAGCGTG  74 76
JHX98_RS01140  190162 ..  190184 +    -7   -4.7339   GTCTAGTATGACAAA           GAGTTGGATA GCG TTTCCAGCTC           TTTTTACCGTTTGTT  83 44
JHX98_RS01145  191528 ..  191557 + -10.1  -4.72986   AAACTGTACAATACC       GTCCAGAGTCG TCACGAAC CGACTTTGGAC        TTTTTAATAAAGGTG 100 40
        nusG  192237 ..  192267 + -14.2  -5.26875   CTATAGGCTCTCAAA       GGTCTGATGGTA TAAATAT TACCATCAGACC       TTTTTTAGTTGGCAG 100 35
         nga  194098 ..  194112 +    -5  -4.20817   CTTATATGGGAGATA               TTTCTG ATC CAGAAG               TTATTTTAGAGTATG  64 169
         slo  196270 ..  196300 + -13.5  -4.35091   CAAATACAGAAAAAA       GCTTGTCTATGAG ATACC TTCATAGACAAGC       TTTGTTATAACTGTT 100 112
JHX98_RS01185  199216 ..  199249 + -10.3  -5.83226   TTTTAAGTCTATTTG     TCCAGATTGGCTCTG TTTA CAGAGCAAGTCTGGC      TTTTTTTATTAGCTT 100 35
JHX98_RS01190  202014 ..  202037 +   -14  -4.83593   ACTCATCTAGAAAAA          CCACAAGAAC GAAG GTTCTTGTGG           TTTTTAATCGTTGTT 100 120
JHX98_RS01195  203677 ..  203687 +  -5.4  -4.07687   CTGCATCTTAAGAAA                 TAGC TCT GCTA                 TTTTAACAAAACAAT  63 43
JHX98_RS01200 NONE
JHX98_RS01205  204662 ..  204691 +  -2.2  -4.07568   TGGAAAGGATAAGAA       CTCTTAACCA GTTTGCACGG TGGCTAAGAG        TTTTAGGAAAAAGAG  52 71
JHX98_RS01210 NONE
JHX98_RS01215 NONE
JHX98_RS01220  207017 ..  207039 +  -9.9  -4.19258   TGTTAATCATTGTTT           GGGCAAGTC CTTTT GACTTGTCC           TTTTCGATGAACTGT  93 99
JHX98_RS01225  208891 ..  208919 +  -3.1  -3.10796   TCTAAAATTGAAAAA        CTCATTCATCGCG AGC TGCTATGAGTAAG        TGTTAAGTCGTCAAA  45 2
        ulaG  210599 ..  210612 +  -3.1   -4.8236   ATAATATAGTTATGT               TCTGT TTCG GCAGA                TTCTTTTTTTAAGTA  65 366
JHX98_RS01235 NONE
JHX98_RS01240  213715 ..  213734 +  -8.6  -4.74103   ATAGCAAATAGAGAA            GTCTAGGA ATTT TCCTAGGC             TTTTTAGGTTAACCA  93 55
        polA  216452 ..  216471 +  -3.6   -4.2092   GAGCTGGTACGAAGC            CAAATAAG TTTT CTTACTTG             TTATTTCTCATTTTG  59 19
JHX98_RS01250 NONE
        perR  217629 ..  217648 +  -7.2  -3.57144   TAACCCTTAAATAAA            GGCATTAT AAAT ATAGTGCC             TTTACAAATCAAAAA  68 44
         tgt  219954 ..  219991 + -12.1  -5.71712   TAAAAATGCTATGAT   CCTGGAACTGAGGGCGA TCTA TCGTCTTTGGTTTCAGG    TTTTTTTGTGTAGAC 100 42
JHX98_RS01270 NONE
JHX98_RS01275  221041 ..  221072 +   -16  -4.76041   TTAAGTTGTGTTGAA      CAGGTCTTGGCAGA TTTA TCTGCTAGGACCTG       TTTTTGGTGGGTCTC 100 57
JHX98_RS01280 NONE
JHX98_RS01285  222569 ..  222595 +  -5.1  -4.56775   ATAGAATATACAAAA         GGGCGTTTCCA AGTAC TAGAAGCGCTC         TTTTTCAGACCCAAT  69 193
         ffs  224809 ..  224832 +  -7.4  -4.75309   TCCAATGTTCAATAG          CAGCGACTTC TTTA GGGGTCGTTG           TTTTGTTACCTTTAG  83 248
        speG  226699 ..  226710 +  -7.2   -5.2112   TTATTAAGGTAAAGC                GGCC TCAG GGCC                 TTTTTTCATGATATT  89 246
JHX98_RS01310  228404 ..  228438 + -18.1  -3.32294   AAGTAAAAGCGATAA     TAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTA     TTATGCCAAATTTCA 100 146
JHX98_RS01320  231557 ..  231607 +   -26  -4.59027   AGGATGAAACGACTC AAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTTG TTTTCTCTAGTGCTT 100 84
JHX98_RS01335 NONE
JHX98_RS01340  235991 ..  236006 +  -3.2  -3.85088   AGGAAGGGAGGAGTA              GTGATG AAAA CAGCAC               GTTTTTTCTGGTTTT  52 25
JHX98_RS01345  237789 ..  237806 +  -8.4  -5.14563   AATAGATGGTATCAG             CTCCGC GTCTTA GCGGAG              TTTTTTGGTGAACAA  90 36
JHX98_RS01350  238678 ..  238700 +  -2.6  -5.31545   ATGGCATGATTAAAA           GTGGTCCGTT TAA AGTTGACCGC           TTTTTTGCTATTCTT  72 40
JHX98_RS01355  239248 ..  239274 +  -8.8  -3.31726   AAATGCTTATGACAG         CAGACCTATTCT TTA AGAGTGGGTTTG         TCTTGTCTAGGGGAG  73 54
        radA  240817 ..  240827 +  -3.2  -3.85817   AACTAACAGCAAAAA                 TAGC TCT GCTG                 TTTCTCAAAAGGAGT  52 181
JHX98_RS01365  241364 ..  241379 +    -9  -5.93252   AGTAGCCAAGTTGTA              GAGCTG AATT CAGCTC               TTTTTTATTTTTAAA 100 43
JHX98_RS01370  242204 ..  242221 +  -4.1  -5.44119   CAAAATAACATAAAA             TCAGCTT TTTA GGGCTGA              TTTTTTTCGCCTAAG  82 42
JHX98_RS01375  243877 ..  243900 +  -6.1  -5.39755   GTCACGACAACGAAA          GATTGAAGA TTAAGT TCTTCAGTC           TTTTTTATCGTTATC  86 88
JHX98_RS01380 NONE
JHX98_RS01385 NONE
JHX98_RS01390  247855 ..  247868 +  -9.5   -5.1675   AAATCAGTATTAAAG               CCCGG CTTG CCGGG                TTTTTTGATAGGTAA 100 301
        rnpA NONE
JHX98_RS01400 NONE
JHX98_RS01405  250211 ..  250239 +  -8.3  -5.36441   AGATCCTAAAAAGAA        TCTTTGGTAGTTA GTT TAGCTATCGAAGA        TTTTTTGTATGACCA  90 39
        rpmH  250672 ..  250694 +  -5.6  -5.15117   TACAACTAAAGTAAA           CCAAGAGT GCTCGAG GCTCTTGG           TTTTTTAACGTTTTC  79 51
JHX98_RS01415 NONE
JHX98_RS01420  253042 ..  253057 +  -7.6  -5.40072   TGTCAAATGGTCACT              GGAAAG GAGC CTTTCC               TTTTTTTAGGAGAGA  93 75
JHX98_RS01425 NONE
JHX98_RS01430 NONE
JHX98_RS01435 NONE
JHX98_RS01440 NONE
JHX98_RS01445  257614 ..  257660 +  -7.4  -3.93963   ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGTCGTTATTTTC TTTGTCAATAATAGT  76 107
JHX98_RS01455 NONE
        rnmV NONE
        rsmA  261339 ..  261350 +  -4.4  -4.90266   CTACCTCAAAAATCA                TCAG TGAT CTGA                 TTTTTAGTTGATAAA  73 267
        rsgA NONE
JHX98_RS01475 NONE
JHX98_RS01480 NONE
JHX98_RS01485 NONE
JHX98_RS01490  265949 ..  265971 +  -9.3  -4.77216   TTTTGATGTGCTTAA           CACTTATGA TGGTT TCATAAGTG           TTTTTGGCTCTTGTT 100 83
        purR NONE
JHX98_RS01500  269661 ..  269691 +  -6.3   -5.1166   TCTATTTGACATGAA      GTACCGTCT-GTGT TATT ATATTAGACGGTAC       TTTTTACTTTTGGTC  84 77
        rpsL NONE
        rpsG  271130 ..  271150 +  -9.7  -4.75372   CAAATATTTAGATAA            CGGGTAGGT CCT GCCTATCCG            TTTTTGCTAAATAGT 100 434
        fusA  273295 ..  273321 +  -8.9  -5.21709   AATAACCACCACTAA        GAGGTTGAGGAT AACT ATCCT-AACCTC         TTTTTTAGTGTAACA  95 36
         gap  274791 ..  274817 +  -5.2  -5.72616   AACTGTATACAAAAA         GGCTAAGATG GAAGGGG TGTCTTAGCC         TTTTTTTGTCTGACT  86 181
JHX98_RS01540  279526 ..  279537 +  -3.6  -4.08216   GGTGGCGGAGGAGGC                GGCG GCGG TGCC                 TTTTAAAAAAGCTGC  57 8
JHX98_RS01545  280472 ..  280495 + -12.4  -4.83759   ATCGTTTAGGATGTT          GCGACAGACC TTGG GGACTGTCGC           TTTTTAAATTTCCTT 100 49
        mecA NONE
JHX98_RS01555  282589 ..  282605 +  -3.7  -3.94438   CCATTATAAAAAAAG              CAGTG CAAATGA CACTG              TCTTTTCTTGAGATG  57 83
        sufC  283442 ..  283465 +  -2.5  -2.84707   TTTGGAGACAATTAC          TTTAGCTTT CTACAA AAAGCTAGG           TGATGTTCTATATAC  42 44
        sufD NONE
JHX98_RS01570 NONE
JHX98_RS01575 NONE
        sufB  288022 ..  288061 + -13.9  -3.54158   AACACGTAAGATAAC  ATATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATAA   TTCATTATTGGCGTC 100 133
JHX98_RS01595  292952 ..  292995 + -15.6  -3.01924   GAAAAATAAAACGAT GTTCAAAAGAACTTTCTCGT TTAT GTGAGGGAGTTCTTTTGAAC TATTGAGGACAACTA 100 32
JHX98_RS01600 NONE
JHX98_RS01605 NONE
JHX98_RS01610 NONE
JHX98_RS01615  297502 ..  297512 +  -6.8  -4.83677   GTTTTGTATTGTAGA                 GGAC TAA GTCC                 TTTTAGTTTTATTTT  84 94
JHX98_RS01645  301058 ..  301071 +  -2.3  -3.06796   TATTTAGTTTTGAGA               GGTCT TGTG GGGCC                TTAGCTCAGCTGGGA  42 69
JHX98_RS01650  301212 ..  301244 +  -9.1   -3.3972   TAGGAAAATAGACAA      TCTTCCCTTGTGTGC AAG GCACACATGGTCAGA      TTCCTAATTTTCTAC  79 97
JHX98_RS01655 NONE
         rrf NONE
JHX98_RS01665  304628 ..  304645 +  -6.3  -5.61824   GGCGGAGTAGAAAGA             GGTAGGA AGCG TCCTATC              TTTTTTTGCATTTTA  89 33
JHX98_RS01670 NONE
JHX98_RS01675  305647 ..  305674 + -12.2  -5.04597   AATCATTTGTGATTA        TCTTATCAGGAG TTGA CTCTTGATAAGA         TTTTTGTATATCAGT 100 323
JHX98_RS01680 NONE
        yqeH  307535 ..  307545 +  -3.2  -3.92542   CGTCGCTGTCATTGT                 TCGT AAA GCGA                 TTATTTAAAAATAAA  55 7
        yhbY  307884 ..  307911 +  -3.4  -3.21276   TAAAGTTAAAGCAAT        CTAGTCCTTTTA TTTG TATAGGGGCTGG         TCTTATGAGACGAGG  47 22
JHX98_RS01695 NONE
        yqeK NONE
        rsfS  309569 ..  309587 +  -6.7  -4.60487   AATGTTACAAAGAGA             CCTTGTC AATAC GACAGGG             TTTTTGAGGATGATA  76 39
JHX98_RS01710  310424 ..  310434 +  -5.4    -3.224   AAAAGAGTTCATTAG                 GCAT TAA ATGC                 TATTATCAAAGCTTA  55 103
JHX98_RS01715  311698 ..  311718 +    -7  -5.41746   ATAAAAAATGAGAGG            CTCAATTA AACTC TAATTGAG            TTTTTTTGGGGGCTT  93 17
JHX98_RS01720  312926 ..  312947 +  -8.1  -4.68994   ATAGAATAATAAAAA           GAGTTGAAA ACTA TTTCAGCTC            TTTTTAAGTGATGCT  86 47
JHX98_RS01725  313962 ..  313985 +  -2.5  -4.91109   TAAACCATCTATTAA          CCAGTTATTC ATCTA GAA-GACTGG          TTTTTCTGATCGGAA  66 38
JHX98_RS01730  315303 ..  315318 +  -5.4  -2.83409   GTCATGATTATGCAG              GCGATG AAAA CATTGC               TATCGTAGATTACTG  52 206
JHX98_RS01735 NONE
JHX98_RS01740  317136 ..  317165 + -18.1  -3.98075   CATAAATAAACGAAA       CAACACCCTAAGT TTTT ACTTAGGGTGTTG        TTGTTTAGATGATGT 100 32
        sstT  320032 ..  320055 + -11.1  -6.01369   TAACATAATAAAAAA          CATCCTTGG AAAACG CCAAGGATG           TTTTTTTATTATTTA 100 48
JHX98_RS01770 NONE
        htpX  324569 ..  324600 +  -3.8  -5.51046   AAGGTTAAAAAACAT      GTGAGCGTTTGGG GTTTTTG CTCAAGC-CTCAC      TTTTTTATGTCTTTG  79 22
JHX98_RS01780  325537 ..  325554 +  -3.5  -3.58703   TGAAATAGTCTAGGA             TATGAGA TGGA TTTCATA              GTTTTCTTTCTGGGA  50 223
        covR NONE
        covS  327785 ..  327802 +  -2.7  -2.53213   TATTCCTTTGGCCCA             GTCTAAC GAGA GTTAGAG              TAGCTTAAGGCATTG  41 10
        nrdR NONE
JHX98_RS01800 NONE
        dnaI NONE
         der  331998 ..  332030 +  -8.5  -4.92783   TCTCATCATTGATAA      GGACTGTGTTGTGTA TGT TACAGGAGACAGTCC      TTTTTATAATACCTT  95 79
JHX98_RS01815 NONE
JHX98_RS01820 NONE
JHX98_RS01825  337467 ..  337481 + -11.4  -4.58466   TAACCAATAACATGT               CCTGCC TTA GGCAGG               TTTTCTCATTCTAAA 100 31
JHX98_RS01830  337995 ..  338009 +  -4.2  -3.68738   GAAACTTTAGAATCA               CAGCTG ATT CAACTG               TTGGTTTGTTAAAAA  55 31
        mltG  339669 ..  339716 + -30.4  -3.33696   TGTGAATAGTCAAAT TCAGTAAACACAAACATGGTGC TTAA GCACCATGTTTGTGTTTACTGA TTCGTTCAAAAAAGA 100 19
        greA  340364 ..  340374 +  -5.4  -3.14255   GCCAAGAGGACTATA                 GATC AAA GATC                 GTTTTCGATGGTTAT  54 158
JHX98_RS01855  343125 ..  343137 +  -4.1   -2.6891   GAATCCTCATTTTCA                GCTTG ATT TAAGC                TAATATGATATAATA  47 15
JHX98_RS01860 NONE
JHX98_RS01865  344381 ..  344412 + -14.8  -3.02511   AAGAAATGATTAACA      TTAAAAAGTGAGTA TAAC TACTCACTTTTTAA       TGTTAACAGGATAAG  95 28
JHX98_RS01870  344920 ..  344943 + -11.1  -4.82667   GGGTTTAAAAAGAAA          CTCAGTTGG CTATTT CCAACTGAG           TTTTTCATATCGTCA 100 147
        racE NONE
JHX98_RS01880 NONE
JHX98_RS01885 NONE
JHX98_RS01890 NONE
        xerD NONE
JHX98_RS01900 NONE
JHX98_RS01905  349741 ..  349752 +    -3  -4.14013   AGCAAATGACGTTTA                CAAA AGGA TTTG                 TTTTAAGGCGTTTTA  57 60
JHX98_RS01910 NONE
        yidD  350873 ..  350887 +  -4.3  -3.38112   AAACAAGCATTCGTT               GGTTT AAATC AAACC               TGTTATGATTTAAGT  53 89
JHX98_RS01920  351541 ..  351598 + -22.5  -3.73402   ACTAAAATAATGGAC TTTTTAAAAGCGTCAGTTTTTGGCAAC ATGC GTTGTCAGTAGCTGACGCTTTTAAAAA TTTAGTCAAAGCTAT 100 31
JHX98_RS01925 NONE
JHX98_RS01930  353102 ..  353151 +  -8.9  -4.43879   GCTTATTTAAATCAT TTAGAATAACATTGGCAAGCA TCACCCCT TGATTGCCAGTGTTATTTTAG TTTTAGTTAGATGAT  89 62
JHX98_RS01935 NONE
JHX98_RS01940 NONE
JHX98_RS01945  356333 ..  356353 + -11.2   -4.7254   CAGATTATTGAGGAA            GACTAGGC TCCAT GCCTAGTC            TTTTTGATGAAAAGT 100 20
        pflA  357221 ..  357237 + -10.9  -4.67556   AAGAGCTGTTATAGG              GTTGAGG TTT CCTCAAC              TTTTTAAAGTATTAT 100 39
JHX98_RS01955  358292 ..  358316 + -10.8  -5.17054   AAAGACGCTTTAAAA          GGACTTGGTT TTTTT GACCAAGTCC          TTTTTTCACTCTTCT 100 44
JHX98_RS01960  359009 ..  359033 +  -9.4   -4.7329   GCACCATAGAAAAAA          GCTAGGAACA AGGAC TGTTCTTAGC          TTTTTGAGTGCTTTT 100 32
JHX98_RS01990  366258 ..  366284 +  -3.1  -5.52023   TAATGACACCAAGAA        CGGTTTCG-TGA GTGT TTATCGAAATCG         TTTTTTCTTAATGAT  77 43
         upp  367101 ..  367112 +  -4.4  -3.90744   TTGTTAAAAAAATCA                GAGA GATT TCTC                 TTCTTTAAAGGAAAA  59 90
JHX98_RS02000  367868 ..  367891 +  -6.8   -5.0916   AGGATCTCTGCAAAA          GTATTCTAGA AACT TCTAGGATGC           TTTTTCTCTTAGAAA  84 43
JHX98_RS02005  368793 ..  368815 +  -4.2   -4.7329   TGGTCCTAAAATAGA          GCACTG-CA AAGATA TGCCAGTGC           TTTTTAGCTCATTTT  70 198
JHX98_RS02010 NONE
JHX98_RS02015 NONE
JHX98_RS02020  370749 ..  370765 +    -3  -4.32046   GCTTAGGACCGTGTG             GCAG-AC CACT GTGCTGC              TTTCGTTTTTGGGAA  60 119
        yabA NONE
        rsmI  372240 ..  372258 +  -2.5  -2.52464   CTTTACCAACAATTT            C-ATGACT TATA AGTCATCG             TAGATTAGGAGAAAA  41 14
JHX98_RS02035  372994 ..  373014 +  -2.5  -3.79764   AGCAGGTAGTAATTG            CTCGATAGC GTC GGTATCCAG            TTGATTTTCTGTGGT  53 325
JHX98_RS02045  373982 ..  374039 + -11.7  -4.62471   TTTAGGATAATGCGA CAAAGTCTCAAAAAAGGACAAGGC AACATTATAAC GCCTTGTCCTTTTTTGGGA-TCTG TTTTTAGAAATTAGA 100 31
        lctO  376305 ..  376334 +  -5.1  -4.13767   TAGAACAGACAAAAA       CCTCTGCTATCATG TCA CAA-ATAGTAGAGG       TTTTACACTGCAAAA  64 38
        scpC  381626 ..  381664 + -20.6  -3.87505   AGAAACAGACATAAA   GACCATAAAAGCAAGCCA AAC TGGCTTGCTTTTATGGTG   TTATTGTCGTGTGCT 100 153
JHX98_RS02065  383007 ..  383026 + -10.8  -2.64134   AAGAAAGTTCATTTA            GGGTAAGT TTTT ACTTACCC             TCCGTTGATTTGCTG  81 55
        metG  385240 ..  385263 +  -6.8  -5.64006   CTATTATTCAAAAAA          CCTAAGCA AGAATATG TGCTTAGG           TTTTTTTGATTGCCT  89 48
        nrdF NONE
        nrdI NONE
        nrdE  389430 ..  389457 +   -10  -5.44119   CGCACGACCTTTCAA        GACAAGCAAG CATCAGCT CTTGCTTGTC         TTTTTTTGGCCTCAA 100 90
JHX98_RS02095  391380 ..  391400 + -13.3  -5.12707   CCCTTTAGTAGTCAG            GCCACCTCT GAT AGGGGTGGC            TTTTTTGGGGTTTAG 100 157
JHX98_RS02100  391725 ..  391759 + -17.4   -3.5393   TGCACGCAATCAGCA     GCACAAAAAGCACC CCTGACA GGTGCTTTTTGTGC     TTTAGCCAACCTCAT 100 55
JHX98_RS02110 NONE
JHX98_RS02115 NONE
JHX98_RS02120  394677 ..  394700 +  -8.1  -5.14965   TTGAAAGACGTGTTT          TCACGAGGG TGAATC CCCTCGTGC           TTTTTTGGTAAAAAT  90 88
JHX98_RS02125  396305 ..  396330 +  -2.7   -5.1861   CAAATGCCTAAGAAA         GACA-GACTT ATTGCTG AAGTCCTGTC         TTTTTTAGTCATCAC  69 46
        glmU NONE
JHX98_RS02135 NONE
JHX98_RS02140 NONE
JHX98_RS02145 NONE
JHX98_RS02150  399923 ..  399960 + -24.5  -4.56597   AGCCCCTCAAAAAAA   GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC    TTTTTGAGGAGACGC 100 65
JHX98_RS02160  401716 ..  401746 +  -6.2  -5.05113   AAAATAAGATAACAA       TAAAGCACAGCGAT TTT AGTGTTGTGCTTTG       TTTTATTTATGTAAA  83 34
JHX98_RS02165 NONE
JHX98_RS02170  403399 ..  403410 +  -2.2  -5.43414   AATAGTGGCAAATGA                CATC AAAG GGTG                 TTTTTTATATGTCAT  74 73
JHX98_RS02180  406930 ..  406962 + -20.1  -5.69473   GCAGACAAACTAAAA      GAACCTGACGTCTCA TGA TGAGATGTCAGGTTC      TTTTTTTGTGATGTC 100 28
        rplK NONE
        rplA  408865 ..  408889 +  -5.8  -5.42265   AGACAAATTTCTGAA          GACAAATCTT CACTA GAGGTTTGTC          TTTTTTATGGTTTAA  86 76
JHX98_RS02200 NONE
         frr NONE
JHX98_RS02210  411422 ..  411438 + -10.9  -5.46657   AATAGGATAAAAATG              CTTTGCC ACT GGCAAAG              TTTTTTGTTACAATG 100 31
        msrA NONE
JHX98_RS02220  412226 ..  412240 +  -5.7  -4.12198   TACGTGGATAAAAAA               GAGTC ATATC GACTC               TTTTGAAGGGTTATC  66 41
JHX98_RS02225  413543 ..  413560 +  -7.7  -5.06103   TGCTATCAAAAAAAA             CTCACGT TTAG GCGTGAG              TTTTTTGACAATTCT  88 45
JHX98_RS02230  415631 ..  415654 + -10.4    -5.243   CTTAGAGTAGTTAAA          GCTGATAAGT TTAG GCTTATCAGC           TTTTTTGATGATTTA 100 46
JHX98_RS02235 NONE
JHX98_RS02240  417463 ..  417477 +  -4.2  -2.68719   GATTTACCTAGCATT               CCCATT TTT AAGGGG               CTTGTGGTATAATGG  47 46
        ybeY NONE
JHX98_RS02250  418554 ..  418567 +  -2.4  -3.25942   GGACAAGACGGTTAA               GCTT AGTGAC AAGC                TTGATCTGAAGCCCT  44 93
         era NONE
JHX98_RS02260  420070 ..  420085 +    -9  -5.63103   GAAAGACGATGTTTC              GAGAGC TTAT GCTCTC               TTTTTTTGCTTCCAA  95 97
JHX98_RS02265 NONE
JHX98_RS02270  421750 ..  421772 +  -4.2  -3.89822   TTTGTCGCTTAATTT           CTTTATTGAG TGA TTCAATCAAG           TTTGTAGAGTAAATG  57 377
JHX98_RS02280 NONE
JHX98_RS02285  423210 ..  423245 +    -5   -3.3164   GTAGCTTTGGTAGCG    TCATTATTTGTTTTTA TCGA TAAAAGAAAATAGTGA     TTATGCCAATGAATT  54 202
JHX98_RS02290 NONE
JHX98_RS02295  423959 ..  423975 +  -2.3  -3.02471   GCGTATTGAAAATTG              GTTAAAA AAG TTATAAC              TGTCTCTGATAACAG  42 117
JHX98_RS02300  424595 ..  424629 +  -8.8  -5.46657   TCATCTTTGCCAAAG     CTCGTCATTTTATATG ATT TATATAGAATTACGAG     TTTTTTGTTAGACTA  95 173
JHX98_RS02305 NONE
JHX98_RS02310  426317 ..  426339 +  -3.4  -4.83615   AAGATAAATAAAGAA          GAGGTCAGG GAACTA CC-GGCCTC           TTTTTGTCCGAAATA  68 83
        rgg2  428797 ..  428807 +  -5.4    -4.005   GGGGGTGAGGACTGG                 TCTG AGG CAGA                 TTTATGAGTTGCTTT  63 8
        mutM NONE
JHX98_RS02340  430493 ..  430505 +  -3.5  -2.73875   TTAGCGCATCAAGGG                TTATA TGT TATAA                TAGTATTAAGAGCGA  43 115
JHX98_RS02345 NONE
JHX98_RS02350 NONE
        rpmG NONE
        secG  433840 ..  433866 +  -6.6  -5.60993   CAAGTAAATAAGGAG         TGAGCTTGAC AGAGTTA GTCTAGCTCA         TTTTTTTATCAGCGA  89 30
         rnr NONE
        smpB NONE
JHX98_RS02375  437522 ..  437542 +    -4  -5.81412   TTAGCACAAAAAAAA            CAGAGTTA GTTCA TATCTCTG            TTTTTTTTAAATAGG  90 90
        ccpA  444588 ..  444603 +    -9  -4.74453   TTTTCAATACTAAAA              TCAGCC CTAA GGCTGA               TTTTTGCATGTCTTA  93 89
JHX98_RS02420 NONE
JHX98_RS02425  447207 ..  447234 + -10.6  -6.09196   TAAGGTGGAACCACG        CTGATTGCGTCC TTTG GGATGCGGTCAG         TTTTTTTGTTTTGGA 100 243
        thrS  449368 ..  449385 +  -5.5  -5.47159   AATCAATGGCAAAAA             GAGGTCC TTAT GGGCTTC              TTTTTCTTTCTTAAA  84 39
JHX98_RS02435 NONE
JHX98_RS02440 NONE
JHX98_RS02445  452159 ..  452183 +  -8.6  -5.33785   TAGATAATGAAGGAA          GGCAGCTGTT GTAAA AATGGCTGCC          TTTTTTGTGATGGTT  95 90
        dhaK NONE
        dhaL NONE
JHX98_RS02470 NONE
JHX98_RS02475  456581 ..  456599 +  -9.6  -5.53991   AATGAACCAAAAAAA             GTTGGGTC TAG GACTCAAC             TTTTTTTGGTGGCTA 100 39
JHX98_RS02480  457495 ..  457505 +  -6.8  -3.42283   ATGCAGTGTGCATCA                 GCTG GTG CAGC                 TCTTTCCGTGGGTTA  62 249
JHX98_RS02490 NONE
JHX98_RS02495  460772 ..  460805 +  -5.6  -3.48288   TTAGAAAAATATAGT     TTTGTGATTTTT TACTAACCAC AAAAATCACAAA      TTGTAATATCAATTA  57 115
JHX98_RS02500 NONE
        vicK NONE
JHX98_RS02510  463742 ..  463774 + -12.1  -5.27399   AGAGAATATGCAAAG      TAGCGCTGATTGGTG ATA TACCAGTCAGGGCTA      TTTTTTGATGTCTTA 100 55
JHX98_RS02515 NONE
         smc  468392 ..  468410 +  -9.6  -5.52909   TGACCAATTAAAAAA             CAGAAGGG AGT TCCTTCTG             TTTTTTTGGATGTTC 100 30
        shp3  469665 ..  469685 + -11.3   -3.3854   TAGGTGTACACCTAA            GTCTTTAGA TAC TCTAAAGAC            TTATAGGTAATGGTT  89 44
JHX98_RS02535 NONE
JHX98_RS02540 NONE
JHX98_RS02545 NONE
JHX98_RS02550 NONE
JHX98_RS02555 NONE
JHX98_RS02560 NONE
JHX98_RS02565  476492 ..  476502 +  -2.6  -4.84363   GTATGTAAGTAAATT                 TATT TAT AATA                 TTTTTGATACTTTGA  66 126
JHX98_RS02570  478249 ..  478262 +  -2.5  -3.95883   TGATTAACAAAAACA               TTTTT GCGA AAAAA                TATTTTTAAGTAATA  53 34
JHX98_RS02575  479583 ..  479624 +  -8.9  -6.02919   TTTTTCAAAGTAAAG GCACTAAGTTGATCTGA CTTACACA TCTTATCAACTTAGTGC  TTTTTTTATTTCTAG 100 75
JHX98_RS02605 NONE
JHX98_RS02610 NONE
JHX98_RS02615 NONE
JHX98_RS02620  483803 ..  483820 +  -7.7  -5.24129   AGAAATATACCGAAA             GCACTTC AAAG GAGGTGC              TTTTTTGTACCCCAA  89 82
JHX98_RS02625  484283 ..  484294 +  -2.2  -2.52464   AGCTGCTCTTGATTA                TCTG GCAA CGGA                 TGCCTTAGAAGCACG  39 6
JHX98_RS02630  485019 ..  485045 + -10.3  -4.98911   TAGTTTATCGCTTGT         TTTATCGCTTG AAGAA CGAGCGATAAA         TTTATTTTTATGGTA 100 368
JHX98_RS02635 NONE
JHX98_RS02640  486558 ..  486572 +  -2.8  -3.76968   ATATTTCAAAAGAAT               TAGGAT TGA ACCCTA               TTTCATCGCTAGATT  51 451
JHX98_RS02650 NONE
JHX98_RS02655 NONE
JHX98_RS02660 NONE
JHX98_RS02665  489842 ..  489874 +  -8.7  -4.44187   GTCTCTACTAAAAAA     TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA      TTTCTGTTTGTCTAT  89 155
JHX98_RS02675 NONE
JHX98_RS02680  493137 ..  493147 +  -2.6  -3.93708   TTAGAAGAGGAGAGT                 TAAT GGG ATTA                 TTTGATCGTTTATTT  53 23
        ftsY  494699 ..  494726 + -14.3  -4.85129   TTATAACAGCAAAAA        CCAGTCTCGTT CAATAA AACGAGACTGG         TTTTTAGTATGTCAT 100 35
JHX98_RS02695 NONE
JHX98_RS02700 NONE
JHX98_RS02705  500645 ..  500671 +  -8.9  -5.54885   GATAAAACTCAAAAA         GCATTTGTTTT GATAA AAAACAAGTGC         TTTTTTATTAGTCTT  95 83
JHX98_RS02725  505486 ..  505501 +  -5.4  -5.07652   ACTTATTGAAAAAAA              TCAGTC GTAA GACTGG               TTTTATTTTGCGAAA  79 439
JHX98_RS02735  505916 ..  505951 +  -8.4   -4.7629   TTGATATGTAAGTAA    GCGAAGGGTCTTATCA GCTA TGATGAGGCTTTTTGC     TTTTTGACTTAGTAA  86 110
JHX98_RS02740 NONE
JHX98_RS02745 NONE
JHX98_RS02750 NONE
JHX98_RS02755  508845 ..  508860 +  -3.3  -6.20267   AACTGAAGAAGGGGG              GATTG TGGCTT CAATC               TTTTTTTGTTTTTGG  95 116
JHX98_RS02765  510387 ..  510397 +  -5.4  -3.07895   TGACACCATTACACA                 GGTA ATC TACC                 TATCTTGAAAATAGA  54 90
JHX98_RS02770  511726 ..  511778 +  -7.3  -5.77853   TAACAAGAAATACTA GAGGCCCTCTTTTTCCAA--ATGGT ATACG ACCATAGTTGGGAAAAGAGAGCCTG TTTTTTTTGAAAGTT 100 41
JHX98_RS02775  512410 ..  512429 +  -9.4  -2.72661   ACTGTTAATAAACCA            GTCTTCAT GGTA ATGAAGAC             TGGTTAGAGATAATA  72 303
JHX98_RS02790  515371 ..  515383 +  -4.9   -3.5774   CAATAAGAACGTTTT                GATAA TGT TTATC                TTTAAACGATTGGAT  56 322
JHX98_RS02815 NONE
JHX98_RS02820  519603 ..  519634 + -17.6  -3.01791   ATAGTAACTATAATA      CAAAATAGACTTGG CACG CCAAGTCTATTTTG       TATTAACCAAGAAGT 100 37
         ppc  524931 ..  524941 +  -2.4  -4.79949   GAATTTTAAAGGTTA                 GCCC TTG GAGC                 TTCTTTTTTTGAGGA  62 91
JHX98_RS02840  526320 ..  526334 +  -8.6  -4.16943   AATAATATTCTAAAA               TCTCCT TTA AGGAGA               TTTTAGAATATAGAC  85 36
         tuf  527915 ..  527931 + -10.8  -4.87807   CTTAAGTTTGAAGAA              GCCCCC AATTC GGGGGC              TTTTTGCTATCTTAA 100 81
JHX98_RS02850  528858 ..  528903 + -20.2  -3.21062   GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGGC TTAACTCTTAATATG 100 26
JHX98_RS02875  534597 ..  534622 +    -7  -5.27335   AATCTTAAACAGCGA         GACTTGTTTA AGAAAA TAAACAGGTC          TTTTTATTTGAACAA  89 184
JHX98_RS02880  537362 ..  537385 + -10.4  -5.67967   TAATAGACGCTAAAA          GGTTTGAGAT AATT GTCTCAAACC           TTTTTTTATAATCGT 100 38
JHX98_RS02920 NONE
JHX98_RS02925 NONE
JHX98_RS02930 NONE
JHX98_RS02935  547757 ..  547772 +  -3.4  -2.85784   TGGCTTTAGTGCTAG              TAAAAA CGTT TTTTTA               TCATTCATTCAATTA  44 61
JHX98_RS02940  549002 ..  549019 +  -6.3  -2.91912   AGAAGGATCATAATA             CTGCTTT GACA AAGGCAG              TATCTGAGTCCATAA  58 359
        queG NONE
        prfB NONE
        ftsE NONE
JHX98_RS02960  553469 ..  553511 + -19.5  -2.74514   TCAAGAGAAGAAAAG CACCCCAAAAGTTAGATGT TTGAT GTATCTAACTTTTGGGGTG TCATTCAAAATTTAG 100 206
JHX98_RS02970  555245 ..  555267 +   -15  -5.61913   AATGATTAATACTGA           CACTGTGAGT GAA ACTCACAGTG           TTTTTTATATTTCTT 100 42
JHX98_RS02975  557824 ..  557864 +   -13  -4.74801   TAGTAGAAACGGACT  GTTTTCTGATATAATAGA AAGGA TCTATTATATCAGAAAAA  TTTTTAATGGCGTTA 100 12
JHX98_RS02980 NONE
        asnS  560736 ..  560770 + -12.5  -3.14931   ATTAGACCCTAATAA     TACAAAAAGTTCATG TCATC TATGAACTTTTTGTA     TTGGTAAGAAGTGAG  91 29
        rapZ NONE
JHX98_RS02995 NONE
        whiA  563929 ..  563952 + -10.4  -5.03994   TATAGAACATTTTTA          TCGTATGAGC CTTT GTTCATACGA           TTTTTCTGTCTAAAA 100 36
JHX98_RS03020  567639 ..  567649 +  -2.6  -4.70319   TACCTGTTAAATCGT                 TAAT TAT ATTA                 TTTTGCTTTTGGTAA  65 435
JHX98_RS03030 NONE
JHX98_RS03035  569177 ..  569187 +  -5.4  -3.16288   AGTCAATAGAATTGA                 CGTT AGA AACG                 TATTGATAAAGTTTC  55 183
JHX98_RS03045 NONE
JHX98_RS03050  570098 ..  570124 +  -3.8  -4.12198   TACAACTTAACGTTT         TACAAAGTTGTA TTT TACAAAGTTGTA         TTTTACAAAGTTGTA  59 370
JHX98_RS03055 NONE
JHX98_RS03060 NONE
JHX98_RS03065 NONE
JHX98_RS03070 NONE
JHX98_RS03075 NONE
JHX98_RS03080 NONE
JHX98_RS03085  572688 ..  572699 +  -4.4  -3.67976   GTAATTAAGAGGTTG                CTAG ATGA CTAG                 TTTAGACTTGCTCGG  55 14
JHX98_RS03090 NONE
JHX98_RS03095  573985 ..  573999 +  -4.2  -3.05935   TCTTTGAAACCCTTG               GCATTC GCG GGGTGC               TTGAATGAGCAATCT  50 3
JHX98_RS03100 NONE
JHX98_RS03105 NONE
JHX98_RS03110 NONE
JHX98_RS03115 NONE
JHX98_RS03120 NONE
JHX98_RS03125 NONE
JHX98_RS03130 NONE
JHX98_RS03135 NONE
JHX98_RS03140 NONE
JHX98_RS03145 NONE
JHX98_RS03150  579333 ..  579351 +  -6.7  -2.76833   AGTGTCCCAGAATGG             GCTAGGC AATAG GCTTAGC             ATTCATTTGCTATTT  57 517
JHX98_RS03155  580343 ..  580359 +  -7.3  -6.17268   AACTGTTTATGGCAG              TCATCAC ATA GTGGTGA              TTTTTTTTGTTATGG 100 15
JHX98_RS03170  581689 ..  581706 +  -2.8  -3.02511   AAACGGGTGTAAAAA             TTAACA ACAGTA TGTTAA              TATTCGGAAACTACC  43 46
JHX98_RS03175 NONE
JHX98_RS03180 NONE
JHX98_RS03185 NONE
JHX98_RS03190 NONE
JHX98_RS03195 NONE
JHX98_RS03200 NONE
JHX98_RS03205  586570 ..  586582 +  -5.5   -5.7946   GAAGAAATTTTACAA                GGGCT ATA AGCTC                TTTTTTTATTGGAGG  91 17
JHX98_RS03210 NONE
JHX98_RS03215 NONE
JHX98_RS03220 NONE
JHX98_RS03225 NONE
JHX98_RS03230 NONE
JHX98_RS03235  590009 ..  590029 +  -8.3  -5.26119   TTATGTAATTTTTAA            GGTCGCA TTTAAGC TGCGACC            TTTTATTTTTGACAA  90 33
JHX98_RS03240  590424 ..  590438 +  -2.8  -3.42366   CTTGTGGATACAGAG               CCTTTT GAA AAACGG               TTATACCATTTTAGA  47 69
JHX98_RS03245 NONE
JHX98_RS03250 NONE
JHX98_RS03255 NONE
JHX98_RS03260 NONE
JHX98_RS03265 NONE
JHX98_RS03270 NONE
JHX98_RS03275 NONE
JHX98_RS03280 NONE
JHX98_RS03285 NONE
JHX98_RS03290 NONE
JHX98_RS03295  603185 ..  603206 + -12.3  -5.43414   CGAGATAAGACAAAA           CCGCTCAGA TTAT TCTGGGCGG            TTTTTTGTGTATGAT 100 53
JHX98_RS03310  606544 ..  606563 +   -10  -5.05782   TAAAAGTGAAGCTAA            GGCTGAGC AACT GCTTAGCC             TTTTTTACGATAACT 100 38
JHX98_RS03315  608241 ..  608266 + -10.6  -5.67711   ATTAATGCTAAAAAA         GCAAACCTAA GAAAGA TTAGGTTTGC          TTTTTGTTTTCTTTC 100 36
JHX98_RS03320 NONE
JHX98_RS03325  610388 ..  610406 +  -8.8  -5.53436   AGGCCAAAAGAAAAA             CCCTCCTG ATA CAGGAAGG             TTTTTTGTATTGTCT  95 85
JHX98_RS03340  612601 ..  612620 +  -6.4  -4.92239   ACTATTTAGTAAAAA            TGTCAGGG ACTT CCTTGGCA             TTTTTAGATTTTTAA  83 42
JHX98_RS03345 NONE
JHX98_RS03350 NONE
        rplS  614794 ..  614810 +  -9.5  -5.01497   GTAATAGAATAAAAA              GACTAGA GTC TCTAGTC              TTTTTATGTCGTCGT 100 59
JHX98_RS03360  615096 ..  615112 +  -6.6  -5.49569   ATTGTCACTGAAAAA              GCCTTT ACATC AAAGGC              TTTTTTGTATTACTC  87 40
JHX98_RS03365 NONE
        gyrB  618420 ..  618452 +  -7.9  -3.33171   GGGACAGCGTTAATG      CATAGGTATTGAG ATCGCCC CTTAGTACCTATG      TTAGTCCTTATTAAG  67 148
        ezrA  620399 ..  620417 +  -8.9  -5.17507   TTTTGATACTTGAAA             GTCGTGA TATTC TCACGAC             TTTTTATTAGCTTTT  95 35
         eno  622579 ..  622601 + -11.4  -5.27023   AAAGTTATTGAGGAA           GGCTTGGATA TGT TATCCAAGTC           TTTTCTTTTTGCAGT 100 88
        sagA  623596 ..  623635 +   -16  -3.29972   TGATGCTAACGTCTC  AGGTAATTAGCAGGTACT AGAC AGTACCTGCTAATTACTA   TATGTTTAGTAAAAT 100 174
        sagB NONE
JHX98_RS03400 NONE
JHX98_RS03405 NONE
JHX98_RS03410 NONE
JHX98_RS03415 NONE
JHX98_RS03420 NONE
JHX98_RS03425 NONE
JHX98_RS03430  631621 ..  631659 +  -9.1  -5.00412   TTAGCTAACTACCAG   GTAGCCCTTTTATTG GCTTATATG CAATAAAAGGGTTGC   TTTTTGCTTATATTT 100 71
JHX98_RS03435  635069 ..  635082 +  -3.1  -3.43217   TGTAACCGTTGCTTT               GCAACC CTT GGT-GC               TTAGTTCCCTTTCAC  48 215
JHX98_RS03440  635677 ..  635698 +  -4.3  -5.57729   GCATCATACTCAAAA           GAGTTGGGT CAAT ACCCTTCTC            TTTTTTATGTTGTTT  82 45
        ligA NONE
JHX98_RS03450  638963 ..  638985 +  -4.8  -5.20216   TCAATTTATTCATAT           GAGGGGCC CATTTGA GGTCTCTC           TTTTTTGATCATATG  77 143
JHX98_RS03455 NONE
        atpB NONE
        atpF NONE
JHX98_RS03470 NONE
JHX98_RS03475 NONE
JHX98_RS03480  643691 ..  643710 +  -3.7  -2.60555   ATTGTCAGCATTCAA            TTTTATC AATCGA GATAAAA             TGACTTATGGGATTC  45 68
        atpD NONE
JHX98_RS03490  645681 ..  645691 +  -5.4  -3.86571   AGGATAAGTAAGAAA                 GGTT TTT AACC                 TATTATTTTGTTTGC  61 60
JHX98_RS03495 NONE
        murA NONE
JHX98_RS03505  647694 ..  647708 +   -10   -4.8667   TAAATTTACTGGAAA               GTAGGC CTA GCCTAC               TTTTTATAGCATCTG 100 22
        pheS  650085 ..  650112 +    -4  -2.71364   GGAAATGACTCAAAT        CACGGCTTGAGA GCTT TCTCTAACCGAG         TGATTCGGGCACTAA  45 188
JHX98_RS03520  652546 ..  652564 +  -6.6  -5.84432   ACGCTAAGAAAAAAA             CTGGGCCT CTA AGGCTCCG             TTTTTTTCTGTTATA  95 34
JHX98_RS03525 NONE
JHX98_RS03530 NONE
JHX98_RS03535 NONE
JHX98_RS03540  655267 ..  655291 +  -4.3  -5.65177   TATTAGAAGAAAAAA          CCAAACAAG CACAGCA CTTGTCTGG          TTTTTTTCTAAGTGT  85 62
        rexB NONE
        addA NONE
JHX98_RS03560  664208 ..  664218 +  -2.6  -3.29739   AAGTAATAAGGTTAA                 TAAA AAC TTTA                 TTAGTATCCGTTGGA  45 35
JHX98_RS03565  664532 ..  664552 +  -6.9   -5.8096   GATAAAAAATAAAAA            CAGTTCTCA CAA TTAGAACTG            TTTTTATTTTTTATC 100 42
        dnaG NONE
        rpoD  668059 ..  668091 + -14.3  -2.71497   AAGAGACTTTATAGA      GGACTAAAATCGTCC AGT GGACGATTTTAGGTC      GTTCCTTTGAAATAA  93 19
JHX98_RS03585  668655 ..  668669 +  -2.8  -3.72302   ATCATTGATAGTAAA               GGGATG AAA TATTCC               CTTTTTTGATGTAGA  51 40
        rfbD  669645 ..  669668 + -11.8  -4.78764   TAAGTATTCTAAAAA          GAGTTGGCTT TCTA AGGCCAACTC           TTTTTCATGGGTTTA 100 38
JHX98_RS03595 NONE
JHX98_RS03600 NONE
JHX98_RS03605 NONE
JHX98_RS03610 NONE
JHX98_RS03615 NONE
JHX98_RS03620 NONE
JHX98_RS03625  679198 ..  679220 +  -4.3  -2.80946   TAATTCTTAAGGTCT           TATTCGTTT ATAAA AAATGAATA           CTCTTTTAAAATCTT  48 140
JHX98_RS03630 NONE
JHX98_RS03635 NONE
JHX98_RS03640 NONE
JHX98_RS03645  683070 ..  683108 + -10.6   -4.5265   AAACTCTTAATTAGA   GGCTTTAAAAAACTTA GCTTGAA TAAGTATTTTAAAGCC   TTTTATGCTATAATT 100 39
        pepT NONE
JHX98_RS03655  684885 ..  684906 +  -5.1  -3.90112   CAGCATGATAAAAAA           GCCCTTACT CGAG GGTAAGAGC            TTTAGTTGGGCAAGA  62 8
JHX98_RS03665 NONE
JHX98_RS03670  686437 ..  686460 + -13.2  -4.40526   TGGAATATTATGTGT          GCGGGCTTGA TTTA TCAAGTCCGC           TTTCGTTTTTCTCTA 100 135
        infC NONE
        rpmI  687242 ..  687276 +  -2.3  -3.61774   AACGTATCAAAGCAA    TGGTTACTGGTCTTTA ATTT TAAAGGC-AGTAGACA     TTTACGAGTATTATA  47 9
        rplT  687742 ..  687760 +  -6.7  -5.22006   AGAAACAAAAATGAA             GGAGACG ATGGA CGTCTTC             TTTTTATTATACTCA  85 91
JHX98_RS03695 NONE
JHX98_RS03700  692136 ..  692187 +  -4.9  -2.95166   TCTCTAACTAGTGAA TGGTCTAAAAATATTATTTCT ACAATAGTTA AGAAATGATGTTTTTAGATTA ATGTTTTTAAAATAA  51 30
        aroC  693395 ..  693407 +  -3.3  -4.52047   AAGCAATTTTAGATA                GCGAG ATA CTGGC                TTTTATGGTATCATA  62 29
JHX98_RS03710  693816 ..  693843 +  -3.5  -5.34055   AAGATAGGAAAAAAA        CAGATTGCTGGC AGCTC GTCAG-GATCTG        TTTTTTAGTGTTTAT  74 48
        gorA  695393 ..  695438 +  -4.9   -5.4833   TAAGGCAATAAAAAA TGATGTTAACAGTTTTTGAGGA AAG TCTTCTA-AACTGCTAGCATCG TTTTTTGTTAGGTGA  83 52
JHX98_RS03730 NONE
        thiI NONE
JHX98_RS03740 NONE
        rplU NONE
JHX98_RS03750 NONE
        rpmA  702334 ..  702361 +  -8.4  -6.34616   AACATCGCATTATAT        AAGGCTTTCCAG GTGT CTGGAAAGCCGA         TTTTTTTTATTTTGC 100 47
JHX98_RS03760 NONE
JHX98_RS03765 NONE
JHX98_RS03770  705252 ..  705271 + -10.8   -4.2793   CTATATTTTGCTGAA            TCTCCTTG TTTC CAAGGAGA             TCTTTTTATTTGAAT 100 367
        pyrR NONE
JHX98_RS03780  707086 ..  707108 +  -2.7   -3.9461   TCATCTTATATCAGG           TACTTCCTG AAAAA TAGGAAGAA           TTGTTGTTAGACCAC  53 9
JHX98_RS03785 NONE
        carA  709435 ..  709451 +  -4.4  -3.79849   GAGAAGTGCTGACTT              TACCGC TTCTT GTGGTA              TTCTTGGTATCATTA  57 236
        carB  712659 ..  712684 + -10.7  -5.55698   TAAAAATTAAAAAAA         TCATTTTTAAG AAAA CTTAAAAATGA          TTTTTTTAGATTATA 100 38
JHX98_RS03800 NONE
JHX98_RS03805  714813 ..  714824 +  -2.2  -3.67597   TCACAACGGATACTA                CAGC TAGT GTTG                 TTATTGACTAGGAGG  47 3
JHX98_RS03810  716248 ..  716277 + -12.3  -2.57564   GTGATACATCTCTTA       TTTCTAGCTGAAC TTCG GTTCGGCTAGGAA        GTTGTCAGGCAATGA  86 206
JHX98_RS03815  718057 ..  718101 + -20.5  -2.63636   TAGTCTTTATTAAAG GTTTAAAGAAAGTGTCAAG AAAAAAA CTTGACACTTTCTTTAAAC TGAGTTATACTGTTT 100 28
        rpsP NONE
JHX98_RS03825  718728 ..  718752 + -15.9  -4.65895   GAGATGGATTGAAAA          GCTTGTTGACT TAA AGTCAACAAGC          TTTTTGAATAGCAAA 100 51
JHX98_RS03830 NONE
JHX98_RS03835  723132 ..  723180 + -30.1  -3.70511   AACGCTAAAAAACAA GCATACCCCTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGC TTATTAGGTGCTCTT 100 76
        rimM NONE
        trmD NONE
JHX98_RS03860  727249 ..  727260 +  -4.4  -2.53346   AAGTTTCAAGAGCAG                TAGC AACA GCTA                 ATATTCAGTTTGTCA  47 50
JHX98_RS03865 NONE
JHX98_RS03870  729416 ..  729447 +  -9.6  -5.58179   TATCAAATCGTTATA      CTCAATATTATGGC TAAA GCTTTAATATTGAG       TTTTTTGTTATGCTG 100 45
JHX98_RS03875 NONE
        pfkB NONE
JHX98_RS03885  733245 ..  733266 +  -8.1  -5.23316   TTTTTCTTACTAAAA           CTAGAATCT GTCA AGGTTCTAG            TTTTTTGCTATACTA  90 54
JHX98_RS03890 NONE
JHX98_RS03895  734832 ..  734864 + -19.5  -4.74084   TCTATTTTAAATAAA      GGATTTAGTTCTGTA CAA TACAGAACTAAATCC      TTTTAGTTTTACTTT 100 91
JHX98_RS03920 NONE
JHX98_RS03925  738958 ..  738981 +  -4.6  -2.76263   GATAGAACCCAAGTA          GCCTAATC ACACTTTA GATTGGGC           TAGTTGGATGATAGG  47 97
JHX98_RS03930  740211 ..  740221 +  -2.4  -2.80472   GTTAGAGAGGAATTA                 GCAC CAT GAGC                 CATTTTTTGGTGGAG  41 17
JHX98_RS03935  742466 ..  742510 + -17.4  -3.80625   CTTAATGTCATGCAA AAACACCCCAAACGTTAGAT TTTTT ATCTAACGTTTGGGGTGTAG TTTACATTATGGCGC 100 398
JHX98_RS03940  743438 ..  743449 +  -5.8     -2.89   CGCTTTAGGTTTTTT                GGCA AAGA TGCC                 TGATTATATAAGGGT  56 60
JHX98_RS03950 NONE
JHX98_RS03955 NONE
JHX98_RS03960  748345 ..  748361 +  -9.4    -4.946   ATAAACGATGCTTAA              CCAGCC CATGA GGCTGG              TTTTTAATGTTTAAT 100 92
         mvk NONE
        mvaD NONE
JHX98_RS03975 NONE
JHX98_RS03980  752531 ..  752563 + -13.6  -3.29549   AGAAACAAAGATTAA      ACACCCATGTAAAC CAATT GTTTACATGGGTGA      TTGCCTTATATTAGT  93 198
JHX98_RS03995  756091 ..  756113 +  -6.4  -3.74872   ACTTTATTTAGATTT           TTTGTGAGCA TTT TGTTCATAAA           TTTGGTAAAATAAAT  66 41
JHX98_RS04000 NONE
JHX98_RS04005 NONE
        clpX NONE
JHX98_RS04015  758840 ..  758857 +  -4.1  -5.18726   TTATCTATGCTAAAA             CATTCTC AGTA GAGGGTG              TTTTTCTTATCGAAA  76 55
JHX98_RS04020  759795 ..  759812 +  -2.7   -5.1925   CACTAGTTGTCCTTC             TTTTAGG ATTG CCTGAAG              TTTTTTGACTTCTGG  75 119
        rpiA  762904 ..  762916 +  -4.8   -2.7555   TACTGTTTTAGAAGC                GCCT AAAGC AGGC                TAGTCTTAGCATATA  50 10
JHX98_RS04035 NONE
        arsC NONE
JHX98_RS04045  765561 ..  765588 +    -2    -3.543   AAAATAATCACGGAG        TGTGAGTTCCAT GAAT GTTGAACTCAGA         TTCTAGCTTTTCTAA  47 127
        deoD NONE
JHX98_RS04055  768032 ..  768042 +  -3.2  -4.45544   TCTCAAGTCGTCCAT                 GCTT AAT AGGC                 TTTTAGTTGCTAGAG  62 441
JHX98_RS04065  769565 ..  769588 + -12.4  -4.81685   TTTTAGTTTGCTGTA          GCCTCGCTTC TTTG GTAGCGAGGC           TTTTTGGTGCTTAAT 100 231
        pyrF NONE
JHX98_RS04075  771067 ..  771085 +  -3.2  -4.38744   CTCTTTAACCCCAAT             TCAAAATG TTA TGTTTTGA             TTGTTTTGTCTACAT  60 77
JHX98_RS04080  772646 ..  772666 +  -5.5  -2.80074   TTTGAGGCAGCAGGA            TTATTGAAG ATT CCTCAATAA            TAATCTTATAAAACA  52 5
JHX98_RS04085 NONE
JHX98_RS04090  774349 ..  774377 +  -9.7  -4.33928   TAAAAAACGAATATT        AACCCTGGAAATA TCA TATTTTCAGGGTC        TTTCTATTTAAAATG 100 48
JHX98_RS04095  775098 ..  775119 +  -2.2  -2.76492   GGCATGACTGGCGTA           GATTGGCT AAAATA AGCCAGCC            ATTTCAACTAAATAG  40 11
JHX98_RS04100  776534 ..  776558 + -13.7  -4.33767   AGTTAAAACAAAAAA          GCTTGACTTTC AGA GAAAGTCAGGC          TTTTAGTAAATTTAT 100 47
        parE NONE
JHX98_RS04115  780188 ..  780212 +  -3.6  -3.98658   CCGACTAGTTTTCCC         GATGGCTTACG TTAT CG-AAGACATC          TCTTTTTCCTAAAAT  57 33
        parC  782834 ..  782859 + -10.7  -4.49344   GGTAGCTAGAACACG         TTAAAAAGAGT GAAA ACTCTTTTTAA          TTTTATGGTAAATTT 100 22
JHX98_RS04125  783989 ..  784004 +    -9  -5.50313   GTAGATTAAAATAGA              GCTTGC TCTT GCAAGC               TTTTTTGATTTTGTG  95 32
JHX98_RS04130  784304 ..  784329 +  -7.8  -3.61517   ACACTTGCCAGCTTA         CAAAAACTAT GATAGA ATAGTTTTTG          TTGTTACGGAAAGAT  71 53
JHX98_RS04135  784432 ..  784447 +  -4.8  -4.52857   ATTTCGGAAACTAAT              CTAATT AGAA AATTAG               TTTTCTGTAAAAAAT  69 40
JHX98_RS04140  784628 ..  784643 +    -9  -4.64334   ATATTGTTATCAAAA              GCTAGC ATTG GCTAGC               TTTTGTTGGAGGATT  89 111
        rpsA  785878 ..  785907 + -15.3  -3.79995   GAATTGTAATAAATC       TAAAAAGTTGAGG TTTT CCTCAACTTTTTA        TTGTCTTCTGGTTAG 100 32
JHX98_RS04150  786074 ..  786089 +  -2.6  -6.11392   AAATCATATAAAAAA              GCCTTAT TTG AT-AGGC              TTTTTTTGTTTCTTT  91 41
JHX98_RS04160  787913 ..  787932 +  -7.2  -5.31275   CCTAATATCTCAAAA            CAAATCAG GAAA CTGGTTTG             TTTTTTGTGATACAG  89 36
JHX98_RS04165  788200 ..  788217 +  -4.8  -2.91276   TCAAATTGTCACACA             GGCAGG TATTAT CTTGCC              CTTTATAGCGAAACA  51 61
JHX98_RS04170 NONE
JHX98_RS04175  789928 ..  789951 +  -3.1  -5.29445   ACGCGCAGCTTTTTT          GCGGTTTTC TTCAAT GAAAGCAGC           TTTTTCTTCTTCAGG  76 176
        miaA NONE
        hflX NONE
JHX98_RS04195 NONE
JHX98_RS04200 NONE
JHX98_RS04205 NONE
        recJ  797028 ..  797047 +  -2.2  -3.82665   CATAATGTCAGAAGT            CTTATTTT ACGA AAAATATG             TTTCGTGATATAATG  50 95
JHX98_RS04215  797669 ..  797690 +  -3.1  -4.41047   ATTTAAAGTAGTAAA           GGCTATAGAT TCG ATTT-TAGCC           TTTTGATTGAGGGAT  60 68
JHX98_RS04220 NONE
         nth  799027 ..  799055 +  -7.5  -5.61596   ATCAAGATACTTATG        GAAAATCGAAAGC CTA GCCTTTGGTTTTC        TTTTTTTATGGAGGT  93 9
JHX98_RS04230 NONE
JHX98_RS04235 NONE
JHX98_RS04240 NONE
        rfbA NONE
JHX98_RS04250  803264 ..  803279 +  -2.6  -3.61654   AACAACATACTCAGA              TGATTG GGAT TAATCA               TTTGAGGTGGATATG  48 44
        rfbB  804539 ..  804578 +   -16  -4.39386   AAATAAAACATTAAA  GAACCTTGTCATATCAAT TATC GTTGATATGACAAGGCTC   TTTTGATAGTTTAAA 100 35
JHX98_RS04260  805266 ..  805280 +  -4.2  -3.19157   TATCATTTTCCCAAA               GAAAGG AAC CCTATC               TTAATGCCCTTAATA  51 65
JHX98_RS04265 NONE
JHX98_RS04270  807708 ..  807745 + -13.6  -5.32565   ATCAGAATAAAAAAA   CAGTTCTCCTAGGGGA AATAAC TTTCCTAGGAGAGCTG    TTTTTTAGTTGCTTA 100 31
JHX98_RS04280  810880 ..  810898 +  -3.2  -2.63623   AACGGTTATTTTTAT             CATTTTTA GTT TTAAAATG             CTCTATTTTAGACAC  43 140
JHX98_RS04285 NONE
JHX98_RS04290  812748 ..  812772 +  -2.2  -5.38497   AATCAACGATCTAAA          TCATTGAC GAATAATAA GTCAGTGA          TTTTTTGATTTCCGT  70 39
JHX98_RS04295  814609 ..  814636 +  -9.3  -4.19735   CGTTAGTGAAAATAG        GAAGGTTAGGCA AAAAC TGCCTA-CCTTC        TTTGATTTTAACAAC  89 35
JHX98_RS04300  815507 ..  815519 +  -6.3  -2.87051   ACCAAAAAGAAGAAA                GGTTA TCT TAACC                ATTTCCTAGTACAAC  58 15
JHX98_RS04305  815882 ..  815897 +  -5.4  -5.80364   AAACTAGGCTGAAAA              TGTCCT CAAA AGGGCA               TTTTTTTGTTAGAAT  91 34
JHX98_RS04310  817830 ..  817856 +  -7.5  -4.95896   ATAGAAACATAAAAA        TAAGCTTTAGCA GTTT TGCTAA-GCTTA         TTTTTATCGCTTTGT  88 29
JHX98_RS04315 NONE
JHX98_RS04320  820245 ..  820284 +  -3.7  -3.17219   TATCCCGTGTCGCGG CA-CCTCACCTTTCGTATG TTTT CGTA-GCAAGGTGGGGATG  TTGATGGCGCTTATC  49 134
JHX98_RS04325  821993 ..  822007 +  -7.2  -2.52464   CGTGGGTGCGTCAAC               GAAATC AAA GATTTC               TGACTTACCGCAAAA  60 288
        lpdA  823903 ..  823942 + -16.7  -4.98522   CACAACTATGAACTG  CACCCCAAACGTTAG ATATAAAACC CTAACGTTTGGGGTG   TTTTTGTATGACATT 100 104
JHX98_RS04335  824324 ..  824337 +  -5.3   -2.5758   GCTAAATCCTTAAGT               CTTTC TTAC GAAAG                GGTTTTGTGATATGG  51 60
JHX98_RS04345  828207 ..  828218 +  -4.4  -3.78958   AAGCGAACTATCGTG                TCCT ACTT AGGA                 GTTTTTGTTTGATGA  57 93
JHX98_RS04360 NONE
JHX98_RS04365 NONE
JHX98_RS04370  833754 ..  833781 +  -9.2  -4.92314   GCCAACAATTGGAAA        GAGGCTTGGG GCGTTTAG CCCAAGTCTC         TTTTTATAAATTACT 100 82
JHX98_RS04375 NONE
JHX98_RS04380 NONE
JHX98_RS04385 NONE
JHX98_RS04390 NONE
JHX98_RS04395  837854 ..  837874 + -10.5  -5.37593   CTAAAAATGATAAAA            CAAGCGTTT TGA AAGCGCTTG            TTTTTTAGTTTGCAG 100 66
        lepA  840559 ..  840586 +  -4.4  -3.64831   CTTTACAATCATTTG        CAC-ATAATGTTA TAA TAATATTATAGTG        TTATCTCATTATTAG  55 122
JHX98_RS04410  841918 ..  841939 + -13.1  -5.08824   GGAAAGTAAAACTCA           GAGAGAACC TCAA GGTTCTCTC            TTTTTTGAATCAAGA 100 65
        msrB  842587 ..  842599 +  -6.3  -2.94218   GGTCAATTTTACAAG                CCTTT GTA AAAGG                TCTATAATAAGGAAT  58 110
JHX98_RS04420  843662 ..  843682 + -11.3  -5.80248   GGTAATCAGACACGA            GAAATCAGT TTG ACTGATTTC            TTTTTTTGTATCTTA 100 36
JHX98_RS04425  844260 ..  844279 +  -2.2  -3.32022   GTCCCTGAGACAAAT            TCAGAAGA TGAC TTTTTTGA             TTAATATCTAGGAGG  44 2
JHX98_RS04430 NONE
JHX98_RS04435 NONE
JHX98_RS04440  846462 ..  846495 + -14.1   -5.0925   TCTCCTAGCAATAAA     GGTAAGTAAGACAAG TTTT CTTGTTTTGCTTACC      TTTTTCCTTTTAAGA 100 44
JHX98_RS04445 NONE
JHX98_RS04450 NONE
JHX98_RS04455  850117 ..  850130 +  -3.9  -2.66634   AGCGTAGTCATTTTT               TGAAA TCGA TTTCA                TAATCTGGTAGACTA  45 82
JHX98_RS04460  851633 ..  851656 +  -4.8  -3.75169   GCGTTACACTCTTCT          TTTTTAAAGT CAAA ATTTTAAAAA           TTTGATAAACTAGTA  59 86
        uvrC  853543 ..  853569 +  -3.8  -2.85446   CATTTCAGTTCGTTA         TTTTGAAACTTT CAG AAAGTTGCGAAG         TGTAGTGAGTTTATG  46 98
JHX98_RS04470 NONE
        pepV  855812 ..  855834 + -16.4  -4.51097   TTATGACAGCAAAAA           GAGCTGGAAC AGT GTTCCAGCTC           TTTTGTGATGATTAG 100 46
JHX98_RS04490 NONE
        rplL  859625 ..  859647 +   -15  -5.50499   AAATAAGCTGATTAG           CCCGCTATTT TTA AAATAGCGGG           TTTTTTTGAATATCA 100 64
JHX98_RS04500  861098 ..  861129 +   -14  -4.99134   AAACAATCAAAAAAA      GACAGTTATGAAAG AATT TTTTCATAACTGTC       TTTTTAGTTTACAGT 100 63
JHX98_RS04510 NONE
        folE NONE
        folP  865151 ..  865166 +  -4.7   -2.5547   CTAATCAAGACATTG              TGGCT GTTTTG AGCCA               GTTGATGTGAGGACT  49 0
        folB NONE
        folK  866131 ..  866145 +  -7.1  -5.42862   TTTGATATAATAGTA               TCGGC TTTAT GCCGA               TTTTTTTACGCGTAT  93 117
        murB NONE
JHX98_RS04540 NONE
JHX98_RS04545 NONE
JHX98_RS04550 NONE
JHX98_RS04555  870905 ..  870923 +  -7.4  -4.84527   ATAAGCCCTCAAAAA             GGCTGG TATTTCT CCAGCC             TTTTTAATGTATCGA  88 37
JHX98_RS04570 NONE
JHX98_RS04575  875858 ..  875904 + -19.3  -3.12378   AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT 100 59
        aphA  877969 ..  877996 +  -6.2  -5.15969   AATTTCTTTCATCAC        CCCACTGAGTAA CCAA TAGCCCAGTGGG         TTTTTTGGGTTACAG  83 73
JHX98_RS04590  879664 ..  879681 +  -3.5  -3.12289   TTCGGAAAGTTCGAG             CTT-GTCT TTT AGACTAAG             TCTTCGAATGTTTTA  45 58
JHX98_RS04595  880384 ..  880395 +    -3  -2.61997   TTATGCTAAACTAGC                TGAA ATTA TTCA                 ATCTTATATCTAGCC  43 1
JHX98_RS04600  881704 ..  881725 +  -6.7    -5.626   GCTATTCAAAAAAAA           CAAGTTTCCT AAA AGGAA-CTTG           TTTTTTTGTCGAATA  89 14
        radC NONE
JHX98_RS04640 NONE
JHX98_RS04645 NONE
JHX98_RS04650 NONE
         pta  890759 ..  890779 +  -6.8  -5.76949   TGACATTATTAAAAA            CGAGTTGG CCAGA CCATCTCG            TTTTTTTTGAAGGTG  89 107
JHX98_RS04660  891788 ..  891814 +  -7.3  -4.33819   GGCCTGATGTGACAT        C-GGACCAGCCA ACAA TGGCTTGTCCAG         TTTCTTCTAAATACT  78 254
JHX98_RS04670 NONE
JHX98_RS04675  895117 ..  895137 +  -6.1  -5.27399   AGAAATAAACAGAAA            TGTTGGTCC GTA GGACTGGCA            TTTTTTCGTCTCTTA  84 33
        guaC  896350 ..  896365 +  -6.2  -3.70149   GTCAAAAATTCTATT              TGGAAT GGTG ATTCCA               TTTAAATGATATGGA  62 5
JHX98_RS04685 NONE
JHX98_RS04690  898549 ..  898563 +  -7.1  -5.39721   TGAATAATTAAAAAA               CGGCT AATTG AGCCG               TTTTTTCTGTGATCA  93 34
JHX98_RS04705 NONE
        prfA NONE
        prmC NONE
JHX98_RS04720 NONE
JHX98_RS04725 NONE
JHX98_RS04730 NONE
JHX98_RS04735 NONE
JHX98_RS04740  906306 ..  906318 +  -2.7  -3.40522   ATTGAACTGATGAGC                CTTTT TTA GAAAG                TTATCATGAAACGAT  47 17
JHX98_RS04745 NONE
JHX98_RS04750  909774 ..  909797 +    -9  -5.28683   AAAAGATAGAATAAA          GTTCGTCTTT TAAC AAAGATGAAC           TTTTTTAATCTTCCT  95 27
JHX98_RS04755  911399 ..  911423 +  -7.7  -5.54079   ATCTGATAGGAAAAA          GCCAGAGCAGT TCA GCAGCACTGGC          TTTTTTGCTTTTTAA  93 42
        gyrA NONE
JHX98_RS04770  915960 ..  915973 +  -3.9   -3.1241   ATTCTTATAACCAAG               TATCT ACCT AGATA                TATCTTAAATATAAT  47 15
JHX98_RS04775  916745 ..  916764 +  -6.6  -4.48175   CGTATTAATGTTTTT            TTATCTAT TGCG ATAGATAA             TTTTACTTCAATTTT  76 304
JHX98_RS04780  917486 ..  917499 +  -8.1  -5.30189   AAGATAAGACAAAAA               GTGCC ATTA GGCAC                TTTTTTAATCTTCTG  90 57
        ylqF NONE
JHX98_RS04805  921472 ..  921488 +  -5.9  -6.28401   CTAATCCTTAAAAAG              TTCTGTT TTT AGCAGAA              TTTTTTTCTTTTTTA  95 30
        dprA NONE
        topA  924609 ..  924638 + -12.3   -5.1361   AATTAAATGAGGATT       ACAAAAGAGGCTA CACA TAGCCTCTTTTGC        TTTTTTCCCCTTTCT 100 31
       trmFO  926099 ..  926128 +  -3.6  -5.30155   ACACTAAAAAAAGAG       TTCCTTTTCAGT TGAGTT GCTGAAGAGGAC        TTTTTTACTTGCTGA  76 40
JHX98_RS04825 NONE
JHX98_RS04830 NONE
JHX98_RS04835 NONE
JHX98_RS04840  929536 ..  929558 +  -6.3  -5.14563   AATAAATCATTATCA           GGAGTTGGA AGCAA TCTAGCTCC           TTTTTTAGTAGAAAG  84 70
JHX98_RS04860 NONE
JHX98_RS04865 NONE
JHX98_RS04870  934997 ..  935018 +  -2.2  -4.46073   TTCCTTTGAGCTAAT           GGCGCTTG GTATGG CAGGTGTC            TTTATTGTGTTAGGC  59 87
        citD NONE
        citE NONE
        citF NONE
        citX NONE
JHX98_RS04895  939895 ..  939921 + -12.5  -5.49569   GAACAATACCAAAAA         CCTATCTGATT TTGAT AATCAGATAGG         TTTTTTATCTTAGTA 100 99
JHX98_RS04915  944584 ..  944613 + -10.9   -4.9251   AATGAATTTCACATC       AAAAAGAGACGAA AATT TTCGTCTCTTTTA        TTTTCGTTTTTTCTT 100 115
        guaA  950564 ..  950615 + -17.8  -3.85786   TGAATGGGAATAACA GAATGAACATTAAAAGACTCGCTCA TTT TGC-CGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT 100 28
JHX98_RS04965  957048 ..  957075 + -14.4  -3.62591   ATAGTAGCAAAAAAA        TACCTAACAGAT TTTT ATCTGTTAGGTA         TTTAAACCTTATCCC 100 425
        coaB NONE
        coaC NONE
JHX98_RS05030  969476 ..  969508 +  -8.7  -4.42851   AATTAGCTTTCACAA      TAACCGAGTTTTT CTCTTTT AAAAACTTGGTTA      TTTTAACTTTCTTAC  89 39
JHX98_RS05035  971400 ..  971422 +  -9.2  -4.88711   AAAGACAAGCAAAAA           GAACTAAGCC GCT GACTTAGTTC           TTTTTAGTCTATTCT 100 69
JHX98_RS05070  979258 ..  979273 +  -2.6  -3.26596   AAACGCATATATTTT              CTATAT AATA ATGTAG               TTAGATTAATTTGGA  45 53
JHX98_RS05075  979550 ..  979561 +  -5.8    -5.626   AATATCCAATGAAAA                CTCC AGCT GGAG                 TTTTTTTATACGATA  88 43
JHX98_RS05180 1001866 .. 1001886 +  -9.8  -3.52111   ACAGCAACAAAAAAA            GTTTGAGG TGGGC CCTCAAAC            TTATAATCCTTTTCG  81 147
JHX98_RS05225 1009652 .. 1009672 +  -3.2   -5.4505   ACCTAGTCTTCTTCT            GCCAAGTT CAAGA AGCTAGGC            TTTTTTCTTAAGCCC  77 67
JHX98_RS05230 1011057 .. 1011090 +  -6.1  -5.42259   AAATAGTTAAAAAAA     TCCCTACAATTTGTT TTTA AACAGATCATAGGGA      TTTTTTTAAGAATAC  86 117
JHX98_RS05285 NONE
JHX98_RS05290 NONE
JHX98_RS05295 1025840 .. 1025879 + -13.3  -5.52909   CAGTAAGCGTTAAGA  CTTTCTTTTAAACTATG ACACAC TATAGTTTAAAAGAAAG   TTTTTTTCAGTGTTC 100 35
        ssrA 1027044 .. 1027059 +  -4.7  -5.98675   CATAACTTACTAAAA              CCTTG TTACAT CAAGG               TTTTTTCTTTTTGTC  93 59
JHX98_RS05310 1027960 .. 1027989 + -13.1  -5.07941   ATATTTTGCTAAAAA       GATTGATTTCGGT GTAC ATCGAAATCAATC        TTTTTATATCATTTT 100 53
JHX98_RS05330 1034757 .. 1034812 +   -13  -3.78775   TTTTTGTTTTACTAG TAGCTTAGTGCTACTTAAATTTTTAA CTCT TTAAAAGTTTACGTAACACTTAGCTA TTTCATCCTAACAAG  95 177
JHX98_RS05335 NONE
JHX98_RS05340 1037093 .. 1037119 +  -9.5   -4.7497   TTACAACATACCAAA         CCTTCTAAGGG CAAGC CCTTTAGGAGG         TTTTTGATAAATAAG 100 42
JHX98_RS05345 1038451 .. 1038498 + -15.8  -4.70659   GTAAATAAAACAAAA GCTCTATAATCTCTTGAATGGG TAAA CCCACTGTAGAGATTATAGAGC TTTTTGAATATCAAA 100 233
JHX98_RS05385 NONE
JHX98_RS05390 1049616 .. 1049639 +  -9.6  -5.31059   TCCAAAAAATAATAA          GGCAAGGAAA CCTA TCTCCTTGCC           TTTTTTGGTTACTGT 100 63
JHX98_RS05435 1058068 .. 1058090 +  -9.2  -4.92239   AAAAAGGTCAAAAAA           GGATGAGG GCCTAAG CCTCATCC           TTTTTCAATTTTTCA 100 20
JHX98_RS05455 1061465 .. 1061479 +  -2.9  -3.25088   TGAATCGTGATTTCT               GAAAA CAAAA TTTTC               TTCATGGATTTGGCG  45 106
JHX98_RS05465 1064073 .. 1064090 +  -4.9  -3.23276   TGGATTCTCATGCTG             CTAGCTT CCTT AAGTTAG              ATTTATTGTCTAACT  54 8
JHX98_RS05470 1064453 .. 1064469 +  -3.7  -3.85817   TTCTTGAAGCCAAAC              CGGAAAT AAA ATTTCAG              TTTCTGAAGGAAAAT  55 17
JHX98_RS05475 1064846 .. 1064862 +  -2.9  -2.56596   GTAAGAATAAATTAT              GGCTAGG AGA CTTAACC              TACATTCCTACACAA  41 81
JHX98_RS05480 1065312 .. 1065322 +  -5.4  -4.30844   TCCCCTTCTGCAAGG                 CTAG GGT CTAG                 TTTTAATGGTCCCAT  67 274
JHX98_RS05490 1066467 .. 1066491 +  -7.2  -4.96646   GAAAAGAACCAAAAA          GGTAAGCAAT CCCTA AGTGCTTACC          TTTTTGCTTATCTCA  88 48
JHX98_RS05500 1069650 .. 1069668 + -14.6  -4.05389   GTAAATAAACCGTAA             CCACCCGT CTA ACGGGTGG             TTTATGGTATCTCTC 100 33
JHX98_RS05575 1087962 .. 1087983 + -10.2  -3.77906   AACGAGATAAAACGT           GGGTAAGG GCAAAA CCTTACCC            TTATGTATTTCAGTT  87 262
JHX98_RS05595 1091110 .. 1091134 +  -2.2  -3.08464   CCCTTGACGATGATG          TGCTTTTTTA AACTA TAAAAGAGCC          TTGACTAAATAATAC  42 15
JHX98_RS05610 1093367 .. 1093396 + -15.3  -3.89614   GGCTACTAAAAACAA       CAATCCAATTACT TCAA AGTAATTGGATTG        TTTAGTATATCAATT 100 67
JHX98_RS05635 NONE
        nrdE 1101459 .. 1101486 +  -8.5  -4.07868   TTAAACTTATTATTA        CCGGTAGAACT TTGGTC GGTTCTACTGG         TTTATCTCGATATCC  82 277
        nrdF NONE
JHX98_RS05650 1104079 .. 1104105 + -14.5  -3.23395   AAAAATATGGAGAAA         GTGCGTTCCCA GGACA TGGGAGCGCAC         TTCGTCATGCTCAAT  95 317
        queA 1119579 .. 1119595 +  -3.7  -4.56597   TTCTTCTTGATGTTT              CTGAC TTTTTGC GTCAG              TTTTTGGCAGAAAGA  65 71
JHX98_RS05765 NONE
JHX98_RS05770 1128869 .. 1128893 +  -7.3  -5.71983   AAAAGAAAAGAAAAA          TCATTGAGA CTTATCA TCTCAATGA          TTTTTTTATGCTTCA  93 19
JHX98_RS05830 1143762 .. 1143795 + -12.7  -4.62069   TTAATAGTCAAAAAA     GCTTGGAAA-TGTGCA CTT TGTACACTTTCCAAGC     TTTTTAAAATGGGAA 100 43
JHX98_RS06105 NONE
JHX98_RS06110 1180982 .. 1181023 +    -7  -2.78032   CGTGAGGCGAATCTA GTATAGTAAA-A-ACCTGCT TCGC AGTAGGTCTCTTTACTATAC CTATTTTAACAGAAA  62 76
JHX98_RS06115 1182236 .. 1182272 +  -3.7  -4.61199   CCTGAACACAAAAAA   GCCCACTGCA-CAGGC TGTAAC GCTTGATACAATGGGC    TTTTATCTATGCAAT  65 64
JHX98_RS06185 1195909 .. 1195934 +  -6.9  -3.49102   CTTGAAGGTATTTTG         GCATCTTCCACG GTT CGTGG-AGATAC         TTCTCTGGAACGTGT  64 169
JHX98_RS06210 1201701 .. 1201724 +  -8.2  -4.11744   ATTAACGTTAGCTAA          GAGAGTTTCT ATAA GGAGACTCTC           TCTTTTTCTATCAAT  81 36
JHX98_RS06215 NONE
JHX98_RS06220 1202652 .. 1202675 +  -8.2   -5.4505   GCTATTCAGACAAAA          CTTAGCCCTT CTAA AAGAGCTAAG           TTTTTTATTAGCGAA  93 51
JHX98_RS06310 1221479 .. 1221491 +  -4.1  -4.57073   GATTATTTTGGATTG                TGCTT CTA GAGCA                TTTTTAGGCCAGATA  67 6
JHX98_RS06385 1237038 .. 1237081 +  -7.6   -5.4756   AAATCTCATCAAAAA GCGAGTAAACGAA-AACCT AAATGAC AGGACATTCGTTTACTCGC TTTTTTGTTAACCTT  93 105
JHX98_RS06435 1247806 .. 1247817 +  -2.2  -5.00884   GTTGGCTACGAAGCG                TTCG TTTC CGAG                 TTTTTTGCCGACCAT  69 365
JHX98_RS06465 1252417 .. 1252444 +  -9.3  -5.64274   GGCATCTATAAAAAA        TACTGTCCTAA TAAGAT TTAGGGCAGTA         TTTTTTTATAGCTAG 100 33
JHX98_RS06470 NONE
JHX98_RS06475 1254896 .. 1254918 +  -9.2  -4.68645   TTGAATACGTAAAAA           GAGAAGATGA GCG TCACCTTCTC           TTTTGCTTTTCCATA 100 394
JHX98_RS06535 1269802 .. 1269812 +  -5.4   -3.2827   ACATCTACAAAGACA                 TCCT AAA AGGA                 TTGCTGATTAGCTAC  55 91
JHX98_RS06555 NONE
JHX98_RS06560 1278776 .. 1278801 + -14.1  -3.28783   TAACATATTCAAAAA         GAGTCTGGGAC TATT GTCTCAGACTC          TTAAGTTGATTTTGA  95 63
        sda3 1283667 .. 1283707 + -10.8  -4.06491   TCTAGATTGTGAACA  TTATCCCAAATGTTAGAT TATTT ATTTAATATTTGGGGTAA  TTTGTATAAAGTTAA  93 66
JHX98_RS06585 1284352 .. 1284373 +  -7.2  -3.54768   TTATAACACAAAAAA           CCGCCCTC AATCAA GAGAGCGG            TTGGCTTTTTATTTA  68 45
JHX98_RS06720 1311533 .. 1311559 +  -4.7  -3.40066   CGTTTAACAAGAAGC        CACA-TTTATAT AACA ATATAAAATGTG         TTAAGTTATTTTATT  55 340
        mobC NONE
JHX98_RS06785 1325580 .. 1325606 +  -8.1  -5.40072   AATTTATATGGGTAA         GGAGATGGAGA GATAA TCTTTATCTCC         TTTTTTTGAGCAACA  93 10
JHX98_RS07045 1371242 .. 1371267 +  -4.7   -4.9792   CGGTTTTTATCAGTT         CAGGGTCTATC TTAT GATAGGCTCTC          TTTTTCTCTCCGCTA  75 56
JHX98_RS07060 NONE
JHX98_RS07065 NONE
JHX98_RS07070 1374819 .. 1374833 +  -4.3  -2.57013   AATAAAACAAAATAC               CCAAA CATAT TTTGG               TACATTACCTTGAAA  47 231
        recX NONE
JHX98_RS07085 1377652 .. 1377679 + -12.8  -3.60925   TTCGTTGTGGTAAAA        GTGGCGTCAATG TTAG TGTTGACGCCAC         TTGGTATTTTTGAGC  95 178
JHX98_RS07165 1388574 .. 1388608 +  -5.2  -4.59376   CATCAACAAAAGTGA     TATGGCTTTATTATCA GAG TGATAGTAAATCTGTA     TTTTACTTTAATAAT  71 42
        cysK 1389631 .. 1389659 +  -8.2  -4.94672   AGACGAAATAAAAAA        GGGTTTGGAACT ACTAA GGTTCCAGACTC        TTTTTAGTGTTCTTT  90 30
JHX98_RS07245 NONE
JHX98_RS07250 1407364 .. 1407377 +  -5.9   -4.2123   CAACCTGTTAGTATT               GCTCC TGGA GGGGC                TTTCTTCGATAGCTC  69 279
JHX98_RS07260 1408600 .. 1408632 +    -5  -4.46212   ATAAATTTGGAGAGA     TAAAGAGGCTGTATC TTGT GAT-CTGTCTCTTTA      TTTTCTAATAAGGAG  69 37
JHX98_RS07265 NONE
JHX98_RS07270 1410653 .. 1410676 +  -8.2  -5.81622   TTATTAATCAAAAAA          CTGAGACAAG TTGC CTTATCTCAG           TTTTTTTGATTTTCT 100 132
        recU NONE
JHX98_RS07305 1417668 .. 1417694 + -10.8  -4.96848   TAATCTAAATAAAAA         GCGAGTCCACGT TCT GTGAGGACTCGC         TTTTTATATGACACA 100 120
JHX98_RS07485 1458959 .. 1458969 +  -6.8  -5.75342   ATTTCTTCTATCAAA                 GCAG AAA CTGC                 TTTTTTTTGACCACG 100 356
JHX98_RS07495 1460434 .. 1460490 + -16.4  -4.62069   GGCTGCTATGGGCTT GCCT--CTATTAACGTAAAAAGGTTCCT TTT GGGAACCTTTTTACGTTAATAGTTAGTC TTTTTGAGCTGCAAG 100 10
JHX98_RS07545 1468156 .. 1468166 +  -2.4  -4.37486   GCAAAAGTGATTTGC                 CCCC AGA GAGG                 TGTTTTTGTTTTGCT  57 95
JHX98_RS07565 1472353 .. 1472371 + -10.3  -5.97575   AATAATTCCTACCTG             CCACCAG TTAAT CTGGTGG             TTTTTTTTGTAGCTT 100 45
JHX98_RS07625 NONE
JHX98_RS07630 1482768 .. 1482793 +  -9.1  -5.47159   TTATTTGAAATCACA         GACAGCTATCA TCTT TGATACCTGTC          TTTTTTATATTCAAA 100 61
JHX98_RS07655 1487797 .. 1487820 +    -9  -4.06864   TAGTAGCAAACGAAA          CCACTATTTT TCAG AAAATGGTGG           TTCTTCTTCTGTCAA  82 38
        manX NONE
JHX98_RS07665 NONE
JHX98_RS07670 1490965 .. 1490989 + -10.8  -5.43621   TGTAATCAACCAATG          GAAGTCTGAG ATGAA CTCAGGCTTC          TTTTTTATGCTTTAT 100 36
JHX98_RS07675 1491708 .. 1491722 +  -2.8  -3.36564   GCCAAAGCGCTCCAG               CATCTT CAT AAGCTG               TGCTTTTTCTATCGT  47 306
        serS 1493105 .. 1493134 + -13.7  -4.07678   TAAATAATAAACTCA       CCCCAGAGATCAT TAAA GTGATTTCTGGGG        TTTACTATTTTAAAG 100 34
JHX98_RS07830 1520590 .. 1520605 +  -3.9  -3.64192   GCTAAGGCATCAACT              TGCCC AATCAG GGGCG               TTTCAACATGTTTTT  54 407
JHX98_RS07840 1522768 .. 1522809 + -16.2   -2.9587   ATAATCTAGCTTCCT GTAGAAATGTCCCACTAA AACATA TTAGTGGGACATTTCTAG  TACTTTAAGCTTTAA 100 37
JHX98_RS07950 NONE
JHX98_RS07955 1557402 .. 1557460 + -21.5  -3.15699   CAATCACTAATTACT CTAAAAGACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTCTTTTAA TATTCGTACATAACT 100 53
JHX98_RS07990 1564766 .. 1564777 +  -2.2  -3.02745   CTGTGTCAAACGACT                GGCT CCAA AGTC                 TCATTTGTCACTAGC  42 83
JHX98_RS07995 1565509 .. 1565529 +  -6.9   -4.6038   ATAACAATCATTTCA            TCCTTGC TATCTAC GCAAGGA            TTTTCGTTTACTCTC  80 37
        mutY 1568630 .. 1568648 +  -5.3  -5.29846   AATGCTTAATCACAA             GTGAACT ATGAC GGTTCAC             TTTTTGTTTACAATT  82 32
JHX98_RS08025 1569400 .. 1569438 +   -17  -3.09933   TGAAGTTAGTAGATA   ATAAAATAAAGCTCAGCG TGA CGCTGGGCTTTATTTTAG   TTAACTCAATTCAGC 100 38
JHX98_RS08055 NONE
        lepB 1575352 .. 1575367 + -10.4  -4.35874   TTTAATTAGAAAAAA              CCTGCC TTTG GGCAGG               TTTTCAGTTATCTTG 100 32
JHX98_RS08065 NONE
JHX98_RS08070 1578447 .. 1578478 + -20.4  -5.24531   AAATAATGGACCAAA      GAAGCTGATTAGGG AAAT CCCTAATCAGCTTC       TTTTTTCTCCAAAAT 100 43
        pflB 1582185 .. 1582224 + -15.3   -5.1925   ATAACTTATAAAAAA  GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC   TTTTTTCACTTATAA 100 58
JHX98_RS08095 1585219 .. 1585246 +  -4.9  -4.98616   AAATAGATAAGATAA        CGTTTCTGG GAATCACTAA CCAGAGACG         TTTTTAATATTTTAC  75 31
JHX98_RS08110 NONE
JHX98_RS08115 1591204 .. 1591227 +  -6.8   -5.5604   AATTAACAAAGAAAA          GTGCTTAG CAATATAA CTAAGCAC           TTTTTTGTTAATTGG  87 35
JHX98_RS08125 1592186 .. 1592198 +  -3.5   -2.8499   TTTTATTGCCTCTTT                TTATA TGT TATAA                TAGTTAGTATTAAAT  44 172
JHX98_RS08130 1592543 .. 1592568 + -12.7  -5.66684   CTAAAAAAACAAAAA         CTAGCTTGAGA AGGA TCTCAGGCTAG          TTTTTTTATGAGTTA 100 37
JHX98_RS08150 1596024 .. 1596048 +  -9.4  -4.70266   TTCATAGCTAAAAAA          GCCTATTATC ACTAA GATAGTAGGC          TTTTTAACTCCTATT 100 34
JHX98_RS08170 1599843 .. 1599858 +  -4.7  -2.84265   ATTAATACCTGACTC              CCACA CTTAGA TGTGG               AGTTTTTTGATATTA  51 57
        rpsN 1600389 .. 1600416 + -14.3  -5.00616   TACTTATCATCATGA        CAACCCGGTAT GCCAAG ATACCGGGTTG         TTTTTTCAAAGGGAG 100 113
JHX98_RS08195 NONE
JHX98_RS08200 1604891 .. 1604929 +   -12  -4.57353   CAGATAATTATCAAA   CTAAAAACCAGTCC TCATAGAACAT GGACTGGTTTTTAG   TTTTCTATAATGGAA 100 103
JHX98_RS08280 1621477 .. 1621524 + -10.3  -3.71649   TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA  87 41
JHX98_RS08345 NONE
JHX98_RS08350 NONE
JHX98_RS08355 1637715 .. 1637743 +  -8.9  -4.90525   TAAAAGACAAAAAAA        CACCACAGTAG ATGATTA CTACTGTGGCG        TTTTATTTAAAATTG  95 38
JHX98_RS08425 1654217 .. 1654227 +  -3.2  -5.02074   TTTGAGAATTGTGAA                 GCTT TAC GAGC                 TTTTTTAAGACCTGG  68 418
JHX98_RS08430 NONE
JHX98_RS08435 1655097 .. 1655118 + -10.9  -5.18357   AATAACACGTTAAAA           GCCTTAGCA GTCT TGCTAGGGC            TTTTTTGGTAGATTA 100 36
JHX98_RS08440 NONE
JHX98_RS08445 1656615 .. 1656632 +  -4.2  -5.45652   TAAGTCAGCATGTGG             GATGTA TTCTTC TACATC              TTTTTTGTTAACAGT  82 421
JHX98_RS08550 1673608 .. 1673624 +  -6.7   -3.0558   AACCACTATCTGACT              TTTCTTT AAA AAAGAAA              TGATTTGTGATATAG  59 61
JHX98_RS08555 1674296 .. 1674307 +  -3.6  -5.85737   AGACTAACAAAAAAA                GGCT AAAG GGCC                 TTTTTTTGTTAGTCT  90 34
         ska 1695734 .. 1695763 +  -5.1  -5.26918   TAACTGACAAAAAAA       GCAAGCAAC ACGCTATCAACA GTTGCTTGC        TTTTTTCTAACCTCT  80 66
        nrdI 1700540 .. 1700585 + -18.6  -3.29273   GGTTACTGACATGAC TAAAGAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTCTTTG TGTTCTCCTAATCCC 100 291
JHX98_RS08675 1708629 .. 1708662 +  -3.7   -4.5265   CGTGGCCAAAAGACA     GTTGTTGCCTGTTCT CATT AGGCCTGGCAACCGC      TTTTATGATATAATT  65 156
        pabB NONE
JHX98_RS08685 NONE
JHX98_RS08690 1712364 .. 1712378 +  -7.2  -2.50479   TTTAAAAATCGCAAC               CGATTT CAA AAATCG               ATAATTTTGCTTGAA  60 49
        ssrS NONE
JHX98_RS08700 1712719 .. 1712732 +  -5.3  -3.99187   CTATACATGAAAAAA               CCTTT GTTT AAAGG                CTTTTTTTGCTTGTC  63 44
JHX98_RS08705 NONE
JHX98_RS08710 1713894 .. 1713909 +  -7.6   -5.4148   CTATTCAGACTGAAA              GCCTTT GTTT AAAGGC               TTTTTTGCTTGTTTC  93 79
JHX98_RS08715 NONE
JHX98_RS08720 NONE
JHX98_RS08725 NONE
JHX98_RS08730 NONE
JHX98_RS08735 NONE
JHX98_RS08740 1720535 .. 1720566 + -11.2  -4.47007   AACAAAATCACACCA      TTAAAAAA-CCAGCT TAC AGCTGGTTTTTTTAA      TTATTTTAATTTTTC 100 74
JHX98_RS08820 1741521 .. 1741556 + -18.5  -5.53991   CTATCACTGATACCA    TTCACGCTAAGCCTC ATTCTA GGGGCTTAGCGTGAA     TTTTTTTGCTGACTG 100 78
        ropB 1746450 .. 1746472 +  -6.3  -5.02715   GAGGCTCTTTAAAAA           GCTAACGCT CTTAT GGTGTTAGC           TTTTTGATTTGGTAT  84 39
JHX98_RS08855 1748372 .. 1748400 + -14.7  -5.48303   CAACAATAAGTAAAA        CAAGTCTAGGAAG TGA CTCCCTAGACTTG        TTTTTTTGAGGTTAT 100 32
JHX98_RS08900 1757903 .. 1757942 + -14.6  -3.31625   TGCCTTTACCTTTAT  GCTTTTTTAAAGCTCAAA CCAG TATGGGCTTTAAAAAAGC   TTACTAATTAGTTTA  95 129
JHX98_RS08925 1762740 .. 1762776 + -19.7  -4.34859   ACGCAGTCTTAAACG    CTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAG    TTTATCTGTTTTCAT 100 6
JHX98_RS08935 1766301 .. 1766321 + -14.1  -3.39327   GAAGTCAAAAAATAA            GGTCTCACA CTT TGTGAGACC            TTATCGGTATAGGAG 100 92
        ahpC NONE
        ahpF 1775981 .. 1776026 + -10.7  -5.02074   GTCAATAAAACAGCA TATTTAAAAGAAGTTTTGAGC TAAC GCTCAAAGCTTCTTTTTGAAA TTTTTTAAAGAATAC 100 33
JHX98_RS08990 1779639 .. 1779663 +  -2.1  -3.21199   CTAGATAAAAATGTA          AGCGTTATCTA TAA TAGGTAACCCA          TTCCCTTAATGAGTA  44 47
        ftcD NONE
JHX98_RS09000 NONE
JHX98_RS09005 NONE
JHX98_RS09010 1783562 .. 1783585 +  -3.9  -3.80733   TTAGTGGGATAAAGA          TAGGCATCA CACTAC TCATGCCTA           TTCTTCTCCAATGAA  55 37
JHX98_RS09015 NONE
        hutH 1786692 .. 1786717 +  -7.5  -3.61178   ACTTCTTTAACTAGA         GGGGCTGTGGC AGAG GTCATGGCCTC          TTTAGACTAACTAAC  71 51
JHX98_RS09025 1787867 .. 1787888 + -10.2  -4.48175   GCAACATAGATAAAA           CCCTCTGA TTCACT TCAGAGGG            TTTTCCTTAGCTTTT 100 54
        rpsB 1793147 .. 1793163 +  -7.3  -3.57144   GTTCCTAACTCTTAT              GGCAAAC TTC GTTTGTC              TTTAACAATCGAAAA  68 51
JHX98_RS09045 1794323 .. 1794348 +  -7.6  -5.24796   GATAAGTCTAAAAAA         GGCAACCTTC TTTCCT GAGGGTTGTC          TTTTTGTTGTGTCAA  89 53
        treR 1801220 .. 1801238 + -13.2  -3.96867   TAAAGACAGAAAAAA             GCCTTGCA AAA TGCAAGGC             TTGCTTTTCTTTTTC 100 38
JHX98_RS09075 1802775 .. 1802785 +  -5.4  -3.90744   CTAGCTATTTTACAA                 GAAG ATT CTTC                 TTCTTTCACGACAGA  63 47
        yaaA 1803611 .. 1803624 +  -8.1  -5.34055   GTCTATATCAAAAAA               GAGGC CTAG GCCTC                TTTTTTAGTCTTTAT  90 17
JHX98_RS09185 NONE
JHX98_RS09190 NONE
JHX98_RS09195 NONE
JHX98_RS09200 NONE
JHX98_RS09205 NONE
JHX98_RS09210 NONE
JHX98_RS09215 1827615 .. 1827628 +  -3.1   -3.6947   GACCCTTGATATATA               TAGCT TTAT AGCTG                TTATGTTGACCTTGT  50 143
JHX98_RS09220 NONE
JHX98_RS09225 NONE
JHX98_RS09230 1828730 .. 1828743 +  -8.1  -5.10601   TTAAATAAACAATCA               GAGGG TTTT CCCTC                TTTTTGTCGTTTTAT  90 33
JHX98_RS09235 1829298 .. 1829319 +  -2.9  -2.55545   AATATTCGGAAACTA           CCCCCTTCA TTTT TAAACGGGG            CTATATTGTTCGGAA  41 39
JHX98_RS09240 NONE
JHX98_RS09245 NONE
JHX98_RS09250 1831374 .. 1831387 +  -6.7   -5.4756   ACTCATTGTGTAAAG               GACCT GTAA AGGTC                TTTTTTGTTCACCTT  87 132
JHX98_RS09270 1836985 .. 1837014 + -11.6   -5.5208   TAAGTAATAACATTA       CTAAGGCTGTCA CATTTA TGACAGTCTTAG        TTTTTTATATTATAA 100 38
JHX98_RS09275 1837372 .. 1837391 +  -7.2  -5.40464   GGACCAAAATAAAAA            TACAGGTT GTTT GACCTGTA             TTTTTATTTATCATA  93 29
        rpmF NONE
        rpmG 1844225 .. 1844257 + -17.2  -4.36903   TTTGGATATTGAAGT      TAAGCCCTGTCATC ATTTG GATGGCAGGGCTTA      TTTATATTTGGTACA 100 175
JHX98_RS09315 NONE
        cadX NONE
JHX98_RS09325 1846335 .. 1846353 +  -5.3  -3.54459   CAACGTGGATTATTC             TTCCCTT GGAGA AAGGGGA             TTTCAGAACGCTTGG  59 61
JHX98_RS09335 1847995 .. 1848020 +  -6.9  -5.32699   ATTGAGATGAGAAAA         GCCTATGAAAT GAAC GTTTCAAAGGC          TTTTTTCGTGTTTAA  89 305
JHX98_RS09350 1849820 .. 1849847 + -11.4  -5.29846   ACTAGTGCTCTATCT        CCCCTTAGATTT TTCA ATATCTAAGGGG         TTTTTCTTTGCAATT 100 78
JHX98_RS09360 NONE
JHX98_RS09365 NONE
JHX98_RS09370 1852703 .. 1852732 +  -7.9  -6.10489   AAATAAGACAAAAAA       CAGCATCTAGTGT AACT GCCTTAGATGCTG        TTTTTTTTTGAGGTT 100 90
JHX98_RS09380 1855814 .. 1855828 +  -8.6  -4.94992   TGAGATACAAAAAAA               GCCTAT TAA ATAGGC               TTTTTGTAAGTTTAA  95 143
       sdaAB NONE
       sdaAA 1867839 .. 1867876 + -14.5  -4.17556   AGACAATTAAATACC   AAAAACCTATTGTTAGT AAAT ACTAACAATAGGTTTTA    TTTCTTCCAGCTATG 100 381
        hasA NONE
        hasB 1879610 .. 1879622 +  -4.8   -2.5955   CGTTCTGAAAACGAA                TGGC ACTAA GCCA                TAGATTATAAAAAGT  50 167
        hasC 1880798 .. 1880814 +  -2.3  -4.28049   ATGATACTTTATAGA              TAGCT CTTATTC AGCTA              TTATTATTTATTTCT  57 259
        yaaA NONE
        recF 1882408 .. 1882426 +  -9.6   -5.6473   ATAACATCAAAAAAG             GGTTCAGT TAA ACTGAGCC             TTTTTTTGATGTTAT 100 40
JHX98_RS09520 NONE
JHX98_RS09525 1889336 .. 1889359 +  -9.6  -4.18259   TATGATAAATGAGGT          GGCTAAGAAG ATCT CTTCCTAGCC           TCTTTTTTAAAATTT  93 46
JHX98_RS09530 1892024 .. 1892074 + -12.2  -2.78495   AATGAGTCAATATAC TAAAAGCATCTCAAGAGCTAGA TAAATAT TCTAATACTTGAGATGCTTTTA TCGATTTTACTAATA  84 75
JHX98_RS09550 1893997 .. 1894011 +  -6.4  -5.88197   ATCAAAGATAAAAAA               GCACTG TTT TAGTGC               TTTTTTTGTATTTAC  95 36
JHX98_RS09560 1896089 .. 1896117 + -17.7  -4.55093   TATTACATTTTATCA        CATAAAACAGTCC AAA GGACTGTTTTATG        TTTCTTATTCTATCC 100 58
JHX98_RS09565 1896897 .. 1896937 + -24.5  -6.04324   TGATGATGAATTAAA  CAGAATTATCAACAAGCTA CTT TAGCTTGTTGATAATTCTG  TTTTTTCTTTTTTAG   0 1
        rlmH 1893997 .. 1894011 -  -5.7   -5.5762   ATCAAAGATAAAAAA               GCACT GTTTT AGTGC               TTTTTTTGTATTTAC  84 156
JHX98_RS09540 1892557 .. 1892571 -    -5  -6.20267   GGAAAAAGAAAAAAA               TTGCCA AAA TGACAA               TCGCGATAGTCCGTA  95 29
JHX98_RS09535 1892440 .. 1892458 - -10.4  -5.99154   TACTAAATAAAAAAA             TCCTAAGA TTA TCTTAGGA             AATATCTTATCACTC 100 37
        trpS 1885194 .. 1885212 -  -3.2  -4.53777   TTTAATCAAAAATAA             GACTATAT AAA ACATAATC             TCTACTATCCTGTAA  62 117
        guaB 1883470 .. 1883492 -  -6.2  -5.80817   TTTAATATAAAAAAA           GAGCTGGCAC AAT ATGTCAGCCC           TTAAAGTTACTAAAT  93 48
JHX98_RS09505 1882394 .. 1882440 - -18.4  -3.20382   TCTGATATTCACTAA TAACATCAAAAAAGGGTTCAGT TAA ACTGAGCCTTTTTTTGATGTTA TGTGGCGATTAAGAT 100 34
JHX98_RS09470 NONE
JHX98_RS09465 NONE
JHX98_RS09460 NONE
        pgsA 1871347 .. 1871359 -  -2.7  -2.66272   TGTTATTTAAACGTA                TCCTT AAA AAGAA                AGCTTGCTCCTTTAA  41 0
JHX98_RS09450 NONE
JHX98_RS09445 NONE
JHX98_RS09440 1868798 .. 1868838 -  -9.2  -4.84642   CTCAAATGAAGAAAA  GTACCTCAATCATTAGAT GTTGT ATCTAACTTTTGAGGTAC  AATTCATTTCTTATA 100 69
JHX98_RS09435 1867844 .. 1867871 - -14.4    -4.946   ATTAAATACCAAAAA        CCTATTGTTAGT AAAT ACTAACAATAGG         TTTTATTTCTTCCAG 100 51
        mnmA 1864374 .. 1864384 -  -2.6  -4.60889   AACTATTTTTAAAAA                 TAAT GTG ATTA                 TATTTAAAATATACA  60 150
JHX98_RS09415 NONE
        mnmG 1861341 .. 1861357 -  -5.8  -5.34555   TTATACCATAAAAAA              GCCCTG AAATA CAGAGC              TTCCACTTGCTTTGA  84 61
JHX98_RS09405 NONE
        rplI NONE
        dnaB NONE
JHX98_RS09390 1857174 .. 1857186 -  -9.1  -5.28942   TATTGTAAAGAAAAA                GCCTC TAT GAGGC                AAAAATCAATCTAAA 100 31
        rpsD 1855814 .. 1855828 -  -8.6  -5.76633   TGAGATACAAAAAAA               GCCTAT TAA ATAGGC               TTTTTGTAAGTTTAA  95 49
JHX98_RS09375 1852660 .. 1852678 -  -7.5  -5.64304   CAAGACAATAAAAAA             CTTGACA GAAAT TGTCAAG             TTATTGTCAAAATAA  93 102
JHX98_RS09355 1849791 .. 1849802 -  -4.4  -4.82901   GGTTGTTGACAAAAA                GTTG ACGC CAAC                 AAACTAGTGCTCTAT  70 37
JHX98_RS09340 1847995 .. 1848020 -  -6.2  -4.51378   ATTGAGATGAGAAAA         GCCTATGAAA TGAACG TTTCAAAGGC          TTTTTTCGTGTTTAA  74 195
JHX98_RS09300 1842130 .. 1842167 - -11.5  -4.83243   CTTACAGAAAACAAA   CAGGTGCAACTCC-CTTC TAA AAAGAGAAGTTACACCTG   TTTTAGTGATTATCT 100 86
        aspS NONE
JHX98_RS09290 NONE
JHX98_RS09285 NONE
JHX98_RS09280 1837366 .. 1837397 - -11.9  -4.25283   AGTGGGGGACCAAAA      TAAAAATACAGGT TGTTTG ACCTGTATTTTTA       TTTATCATAATTTCT 100 23
        argR 1834316 .. 1834331 -  -3.2  -2.65409   TAATCATCAATTAAT              GGCTGA TGAC TGAGCC               TATCTTCTAGTTCTT  43 247
        mutS 1831616 .. 1831639 -  -7.5  -5.24796   TTGACAGAACAAAAA          GATGCCTTC AATATA GAAAGCATC           TTTTTCATTTTCAGC  89 48
JHX98_RS09180 NONE
JHX98_RS09175 NONE
JHX98_RS09170 1820541 .. 1820562 -  -5.9  -3.86015   GAGTTCTTTGACAAA           GTTAGCTTA CTAG TCAGCTAAC            AAAATACTTTACATT  65 153
        mutL NONE
JHX98_RS09155 NONE
        ruvA 1815407 .. 1815420 -  -5.3  -2.53641   GAACCCATGAGCAAC               GTTTC ATGT GAAAC                ACCTACCCTTTCATT  51 28
JHX98_RS09145 1814834 .. 1814860 -  -8.9  -5.15634   TATTTTATCAAAAAA         TCTTCCAATTC ACGAA GAATTAGAAGA         TTCTATTGAAAACAC  95 18
JHX98_RS09140 1813468 .. 1813483 -  -2.6  -3.23216   CGTCAGCAGGATTAA              TCTACA TAAT TGTAAA               CCATATCCTACTATA  45 55
        recA 1812271 .. 1812282 -  -7.2   -4.6644   AATACATTTTAAAAA                GCCC TGAA GGGC                 TCTTTTTAATCTTCA  83 31
         spx 1811584 .. 1811596 -  -7.7  -5.47821   AGGTATTTAAAAAAA                GCTCT ACA AGAGC                TTTTAGAGCGCAGCA  93 28
JHX98_RS09125 NONE
        ruvX NONE
JHX98_RS09115 1810443 .. 1810457 -  -5.7   -5.6473   ATAACATTAAAAAAA               TAGCC CTCAC GGCTA               CTTTTTAACATAGTG  86 52
JHX98_RS09110 1808461 .. 1808504 -   -10  -5.68023   CGACAACTAAAAAAA TCAATATATTGTG-TCAAG TTTTTTG CTCGAACACAATATATTGA TATTAAATTACTTTT 100 33
        nrdD 1806142 .. 1806172 - -10.7  -4.06533   GAAACCATTAAACAA       TAAAAGATTGCTT GCATG AAGCAACCTTTTA       AGCATATCATATTTC  93 70
JHX98_RS09100 NONE
JHX98_RS09095 1804922 .. 1804938 -  -3.7  -3.26471   TTATTTCCATATCAA              TTCCTAA TCC TTAGGCA              ACTCTACCGTTAACT  49 12
JHX98_RS09090 NONE
        nrdG 1803611 .. 1803624 -  -8.1  -5.21709   GTCTATATCAAAAAA               GAGGC CTAG GCCTC                TTTTTTAGTCTTTAT  90 194
JHX98_RS09070 1801220 .. 1801238 - -13.2  -5.51046   TAAAGACAGAAAAAA             GCCTTGCA AAA TGCAAGGC             TTGCTTTTCTTTTTC 100 273
        treP 1798213 .. 1798241 - -11.2  -3.63744   TTCCTCCCTAAAATA       GTTTCAGGAACTG ATCT CAGTTCCTGAA-C        GTTTTCTCTTAGTAA  90 43
        treC 1796528 .. 1796566 - -16.2  -3.28712   CTTTTTTCGTGACAA   TCACCAAAAGCCTGAGGC CTA ACCTCAGGCTTTTAGTTA   GTTATCAGCTAAAAT 100 23
        pepO 1794391 .. 1794415 - -13.7  -5.32565   TAAGGAAGCAAAAAA          CTGATCCTGTG TTT CACAGAATCAG          TCATTTTTATAATCA 100 71
JHX98_RS09030 1787867 .. 1787888 - -10.2  -4.68124   GCAACATAGATAAAA           CCCTCTGA TTCACT TCAGAGGG            TTTTCCTTAGCTTTT 100 32
JHX98_RS08985 1775990 .. 1776017 - -11.4   -4.2535   ACAGCATATTTAAAA        GAAGTTTTGAGC TAAC GCTCAAAGCTTC         TTTTTGAAATTTTTT 100 39
JHX98_RS08970 1773330 .. 1773366 -    -6  -5.75538   CGCAAAAAATAAAAA   CCTTGATTTAACAACGT TTTC ACGAAGTTAA-TCAAGG    CTTGTTTTGTATATA  88 39
JHX98_RS08965 1772624 .. 1772647 -  -9.6  -5.42514   GTAGAAATCAAAAAA          GCAGTTGTTG TTTC CAACATCTGC           TTCTCTTTAGTTACT 100 50
JHX98_RS08960 NONE
JHX98_RS08955 1769428 .. 1769456 -  -9.8  -3.75015   AGAATCTTTAGTAAA       GTTAGCACTC-AT GTTC ATCGAGTGCTAAC        TTTATATTCTATTTT  83 140
       groES NONE
        groL 1767327 .. 1767363 -  -7.4  -5.68023   TCACAACTAAAAAAA    CAAAGATGGGATATCA TGAGT CGAAATCCAATCTTTG    TTCTTTTTTCATAGT  93 98
JHX98_RS08940 1766441 .. 1766461 -  -6.9  -3.58365   TAGTATACTAGATAA            GACTTAAAG AAA CCTTAAGCC            AAAAAAACAACAAGA  68 504
JHX98_RS08930 1762738 .. 1762778 - -14.9  -3.57792   TGACGCAGTCTTAAA  CGCTCAAAAGGCTAGGAAA TAA TCTCCTAGCCTTTTGAGTT  TATCTGTTTTCATAG 100 95
JHX98_RS08920 1760793 .. 1760809 -    -3  -2.77222   ACTATGATCTTAAAG              TAACCT TGATT AGGTCA              TCGAAATATGTTTTG  43 18
JHX98_RS08915 NONE
        rpmG NONE
        secE 1757974 .. 1757993 - -13.6  -5.34555   TGATACTACAAAAAA            GGCTGGGA ATAC TCCCAGCC             TAGGCTTTTCCAAGC 100 68
JHX98_RS08895 NONE
JHX98_RS08890 1755103 .. 1755124 -  -2.2  -5.99154   CATCAAACAAAAAAA           GCCC-TGAC GTTTG GTCTTGGGC           CTCTATAAATATCAT  87 59
JHX98_RS08885 NONE
JHX98_RS08880 NONE
JHX98_RS08875 1752855 .. 1752874 -  -5.7  -5.00616   CCTTTTTCTAAAAAA            CCACCTC TAACTG GAGATGG             TCTCAAGAATTTGTG  77 52
JHX98_RS08870 NONE
JHX98_RS08865 NONE
JHX98_RS08860 1748367 .. 1748405 -   -17  -3.01329   CCAACCAACAATAAG   TAAAACAAGTCTAGGAAG TGA CTCCCTAGACTTGTTTTT   TTGAGGTTATCTGGC 100 67
        sdaB 1746570 .. 1746589 -  -7.2  -5.06735   GACAAATCATAAAAA            GCAATGAC GGCA ATCATTGC             TTTTTCTAGTATTTT  88 113
JHX98_RS08840 1744864 .. 1744876 -  -3.3  -4.07568   TGGTTTTGGTCAAAA                GACGC TAT GAGTC                GTTGCACTTATCATC  55 74
        speB NONE
JHX98_RS08830 1742919 .. 1742950 - -12.4  -4.31329   TCAAAAATCGTAAAA      GGACTGAGTCCCAT CTCT ACAGAACTCAGTCC       TTTACCTTGGCATCT 100 225
        prsA 1741584 .. 1741617 - -15.6  -2.60496   CTGGTTTTTAAATAT     TAAAGACTCTATCC TTATTT GGATAGAGTCTTTA      GCTTTATGACATTGC 100 149
JHX98_RS08815 NONE
JHX98_RS08810 1740095 .. 1740132 -  -2.8  -5.45802   TTTGGAAAACAAAAA   TCATATAACCGTTC GCTCACATAA GCACGGGTATATGA    TTTTGTACATTTGCG  76 154
JHX98_RS08805 NONE
JHX98_RS08800 NONE
JHX98_RS08795 1736628 .. 1736649 -  -5.9  -3.14136   GTATCAAGCAGCTAA           GGATGAC ATCAAAGG GTCATCC            TTTTTGACTTTTATG  57 54
JHX98_RS08790 NONE
JHX98_RS08785 NONE
JHX98_RS08780 NONE
JHX98_RS08775 1732431 .. 1732468 - -10.9   -5.9362   CAAAAGACAAAAAAA   CTTCCAATAACTTAG CTTGCGCT CTAAATTATTGGAAG    ATTATTTGACCTATT 100 44
JHX98_RS08765 1728370 .. 1728391 - -13.1  -4.60797   CTTCTATACATAAAA           GAGAGAACC GACT GGTTCTCTC            TTGATGTTCACTCAG 100 58
      scpA/B 1724546 .. 1724572 - -16.8  -5.76633   GCACATATAAAAAAA         TAGAGAGAACCA AAT TGGTTCTCTCTA         TTAAATAAGCTCTTA 100 56
         lmb NONE
JHX98_RS08750 1720813 .. 1720829 -  -6.7  -2.66787   CTAACATGGATACCA              TTTCTTT GCA AAAGAAA              ACCGCTATTATCCAA  57 132
JHX98_RS08745 1720543 .. 1720557 -   -10  -5.20216   CACACCATTAAAAAA               CCAGCT TAC AGCTGG               TTTTTTTAATTATTT 100 35
JHX98_RS08670 NONE
JHX98_RS08665 NONE
JHX98_RS08660 1704038 .. 1704063 -  -3.9  -5.87996   GAAGCAATAAAAAAA         GGCCGTTGACA CAAT CGTGAACTGCC          TGTTCGTTTCTTTAG  90 71
JHX98_RS08655 1701528 .. 1701539 -  -2.2  -2.73771   CCATAGGGCCTAAAC                CAGC TATG GCTA                 TTACCTATCACTATC  40 54
JHX98_RS08650 1700544 .. 1700581 - -17.2  -3.82218   ACTGACATGACTAAA   GAGGTCTAACCAGCTC TACCTT GAGCTCGTTAGACCTC    TTTGTGTTCTCCTAA 100 111
JHX98_RS08635 NONE
JHX98_RS08630 1695734 .. 1695763 -  -8.7  -5.66684   TAACTGACAAAAAAA       GCAAGCAACACGCT ATC AACA-GTTGCTTGC       TTTTTTCTAACCTCT  95 53
JHX98_RS08620 1693164 .. 1693181 -  -9.9  -5.18357   CAAGGCAGCAAAAAA             GAAAGCC CTGT GGCTTTC              CTAATATTTCAACAA 100 26
        ugpC 1691704 .. 1691736 - -19.5  -3.00525   TTTGCGCAAATGACA      TGATAAAAAGGTTGG AAC CCAACCTTTTTATCA      ATATCGCTTATACCT 100 40
JHX98_RS08610 1689950 .. 1689980 -  -8.4  -4.32649   ATCTCAAAAATCAAA      CAGCCAAAACGAG TTTCCG CTCGCTT-GGCTG       TTGGGTAAACTCAAA  83 54
JHX98_RS08605 NONE
JHX98_RS08600 1685807 .. 1685818 -  -2.2  -2.90496   TTCTTCTTTAAACGA                GACGC TAA GCG-C                AGTGCTTTACTCACG  41 32
        yajC 1685312 .. 1685333 -  -3.1  -5.83211   GATCAAAACAAAAAA           GTTTGGCATA TTT CAT-CCAAAC           TTTCCCCGCCTTAAT  89 36
JHX98_RS08590 NONE
JHX98_RS08585 NONE
        rseP 1682154 .. 1682187 - -12.6  -3.15544   TTTCATTTTGAGTAA     GACCTCAACCCT TGCAAATCTT AGGGTTGAGGTC      TTTTTCGATCTTTAA  91 75
JHX98_RS08575 1680146 .. 1680170 -  -8.6  -4.80882   AGTTCACAGCAAAAA         GAGGCCGCTCT AAAC AG-GCAGCCTC          TTCATTTCTTTTTTA  93 38
JHX98_RS08570 NONE
JHX98_RS08565 1674964 .. 1674974 -    -4  -3.02096   TGTAGTAATTATATA                 TTCT CTA AGAA                 GAGCTGTAAAGAGAT  47 45
JHX98_RS08560 1674288 .. 1674315 - -11.5  -3.27022   TTGATTTTAGACTAA        CAAAAAAAGGC TAAAGG GCCTTTTTTTG         TTAGTCTAAATAGCC  87 31
JHX98_RS08545 1673036 .. 1673046 -  -3.2  -2.85147   CTTAAGCAACAGAAC                 TAGC AAG GCCA                 AATAGCCAAGAGGCT  44 1
        rpsO 1672433 .. 1672464 - -11.8  -3.54475   TTCTTCATGATACAA      CAAAAGATACCTCA TCAC TGAGATACCTTTTG       TTATTAGATAAAATC  91 156
JHX98_RS08535 NONE
JHX98_RS08530 NONE
JHX98_RS08525 NONE
JHX98_RS08520 1667726 .. 1667743 -  -4.1  -5.77856   AACAAAGCAAAAAAA             GCAGG TTGGTATG CCTGC              TTTCGTCTCCTAATA  91 41
         pnp NONE
JHX98_RS08510 NONE
        cysE 1663557 .. 1663575 - -11.8  -4.90266   TTTATTAACGAAAAA             CCTTCACA ACC TGTGAAGG             CTTCAGAAAGTAGAC 100 462
JHX98_RS08500 NONE
JHX98_RS08495 NONE
JHX98_RS08490 1661505 .. 1661528 -    -9  -4.29738   TCAGATCTATGAAAA          TAAGAGTCTCC TAG GG-GACTCTTA          TGAGGATATCAATTG  89 23
JHX98_RS08485 1660502 .. 1660512 -    -4  -2.66634   GAGTTTATTATACCA                 TGAA TGT TTCA                 AAATAAATGCATAGA  45 46
        rlmB NONE
JHX98_RS08475 NONE
JHX98_RS08470 1658227 .. 1658250 -  -8.2   -5.2189   TTAAGCAGCAAAAAA          GGATTGAGGA TTTC TCTTCAATCC           TTATAAGGGATTAAC  90 36
JHX98_RS08465 NONE
JHX98_RS08460 1657395 .. 1657411 -  -6.5  -2.65298   TCGATTTAGGAGAAT              GGCAGAG CTG CTCTGCT              GGTGTTAACGAGAAT  57 30
        rplM NONE
        rpsI 1656286 .. 1656312 - -12.4  -5.77632   AAAACGACAAAAAAA         GCACCTTGCAAG AGA CTTGCAAAATGC         TTGTAATCGTTGATG 100 52
        lacA NONE
        lacB 1651630 .. 1651646 -  -5.1  -2.86124   TTTATTCAAATATTA              GTCGTGA TAT TCACCAC              GGACCCATTTTTCTA  51 6
JHX98_RS08410 NONE
        lacD NONE
JHX98_RS08400 NONE
JHX98_RS08395 1647568 .. 1647605 - -11.7  -4.59511   AATATCTTTCAAAAA   TAAAGTTCCCAAA-ACAA TTT TTGTGTTTGAGAACTTTA   CGACATTTAAACTGT 100 45
        lacG 1646005 .. 1646022 -  -2.7   -3.3334   AACCCGATCTTACAA             CTAATGG ATTA CCATCAA              CAGCAAATAATACTA  45 134
JHX98_RS08385 1645413 .. 1645439 - -12.4  -4.68994   ACCACTACTTAAAAA         TCCTGCCTAGAC TGA GTCTAAACAGGA         AATTTTTAGTCTGCT 100 58
        lanM NONE
JHX98_RS08375 NONE
JHX98_RS08370 1640425 .. 1640439 -  -4.4   -2.7644   ACTTAATCGTTAAAG               TTAAAA GAT TTTTAA               AATTAATTTTTGATT  47 28
JHX98_RS08365 NONE
JHX98_RS08360 1638215 .. 1638237 - -11.4  -3.17714   GGAAATCCCTAGCAA           CGACACAAGT AAA ACTTATGTCG           TTTGATTATCTGCAA  87 42
JHX98_RS08340 1630379 .. 1630390 -    -3  -2.87944   TATTAGTATACGATA                TCTT GTAT AAGA                 TTGTCAACTCTTTTT  44 155
JHX98_RS08335 1628528 .. 1628541 -  -2.3  -3.06796   TCCCAGCTGAGCTAA               GGCCC CACA AGACC                TCTCAAAACTAAATA  42 69
JHX98_RS08330 1628355 .. 1628387 -  -9.1   -3.3972   GTAGAAAATTAGGAA      TCTGACCATGTGTGC CTT GCACACAAGGGAAGA      TTGTCTATTTTCCTA  79 97
JHX98_RS08325 NONE
         rrf NONE
JHX98_RS08315 1624954 .. 1624971 -  -6.3  -5.61824   TAAAATGCAAAAAAA             GATAGGA CGCT TCCTACC              TCTTTCTACTCCGCC  89 33
JHX98_RS08310 NONE
JHX98_RS08305 1624145 .. 1624157 -  -6.3  -3.10701   GAAAGACGTATTGAA                GCTTA CTC TAAGC                TACTAACGATTTAAA  59 118
        truA NONE
JHX98_RS08295 NONE
JHX98_RS08290 NONE
JHX98_RS08285 1621477 .. 1621524 - -10.3  -5.11033   TATAATCTTAAAAAA TCCTTTTTTCTAGAA-AAAACA CCAAT TGTTTTATTCCAGAAAAAAGGG TTTAGGATTTACGGA 100 27
JHX98_RS08275 1618959 .. 1618985 -  -8.1  -5.69262   TTAGAAAAAGAAAAA         CCAGACTAGAA AGACG TTCTAATCCGG         CTTGTACGTTTTGTT  93 52
JHX98_RS08270 1618089 .. 1618113 -  -2.8  -5.54907   TCTAGAAAACAAAAA          TAGCCCCCTA TTAAC TAGAGAGCTT          TTGCCTGACCTCATA  76 123
JHX98_RS08265 1616355 .. 1616371 -  -3.7  -2.62038   CTTAAAACCACTAAT              TGCTATT TTT AATAGCT              GCTGTAACAAAAGCG  45 4
JHX98_RS08260 NONE
JHX98_RS08255 1615086 .. 1615108 -  -9.2  -5.38326   TTAACCAAACAAAAA           GAGACGAATC AAT GATTCACCTC           TTACATTATGCGGAG 100 34
JHX98_RS08250 1613991 .. 1614004 -  -5.2  -5.09225   ATTGTATCTAAAAAA               GCCC TCAAGG GGGC                TTTAGGGTATTTAGT  79 49
JHX98_RS08245 1613427 .. 1613461 -  -8.9  -3.08696   ATGGATAGAAATAAG    CTAATAAAAA-AAGCC CTAA GGCTTATTTCTATTAG     ATGCGTTCTACTTTA  71 22
JHX98_RS08240 NONE
JHX98_RS08235 1611234 .. 1611255 -  -7.3  -5.09685   CAATATAGACAAAAA           GAGTCAGAC CTTT GCCTAACTC            CTCTTTTTTTATTGT  88 47
JHX98_RS08230 1609985 .. 1609995 -  -2.6  -2.84203   AAAAGTCAATACAAC                 TTAA CAT TTAA                 TCAATACTATGTTGT  42 180
JHX98_RS08225 1609064 .. 1609075 -    -3  -2.70932   CCTCTTTTTCAATTA                CTTT ATTT AAAG                 CTTTTTAAACTTTTA  43 16
JHX98_RS08220 1607635 .. 1607652 -  -7.7  -5.65513   GATCAACTAAAAAAA             GACATGC ATCA GCATGCC              CTTTACTATATATTA  93 50
JHX98_RS08215 1606856 .. 1606872 -  -2.3  -3.00298   CCTGTCAAGTATATA              TGTTATA TTA TCTAACA              TCACTGTGTTTTTTG  42 16
JHX98_RS08210 1606417 .. 1606435 -  -3.2   -3.5365   TTAAATTTTATACAA             TTCATATC TTA AATACGAA             AATTACCAATATGCT  50 15
        glnA 1605009 .. 1605031 - -10.6  -4.19258   ATAGCTCATCCAAAA           GACCCACTCA ACT TGAGCAGGTC           CTGATAAGTCTAATA 100 35
        tsaB NONE
        rimI NONE
        tsaD 1600392 .. 1600413 - -10.2  -3.45023   TTATCATCATGACAA           CCCGGTAT GCCAAG ATACCGGG            TTGTTTTTTCAAAGG  85 84
         udp NONE
JHX98_RS08160 NONE
        deoC 1596024 .. 1596048 -  -7.2   -5.1287   TTCATAGCTAAAAAA          GCCTATTATC ACTAA GATAGTAGGC          TTTTTAACTCCTATT  88 87
JHX98_RS08145 1594081 .. 1594095 -  -7.8  -5.00616   TTTTCCTCCAAAAAA               GACCCT GAT AGGGCC               TTCGTCATTTTTTGT  88 43
JHX98_RS08140 1593428 .. 1593443 -  -4.6  -2.58663   ACCTAGCGTTATAAG              CAAGGG CTAA CCCTAG               GGATTTTTTTATTTT  47 59
JHX98_RS08135 1592543 .. 1592568 - -10.5  -5.86609   CTAAAAAAACAAAAA         CTAGCTTGAGA AGGA TCTCAGGCTAG          TTTTTTTATGAGTTA 100 45
JHX98_RS08120 1591204 .. 1591227 -  -7.5  -5.13527   AATTAACAAAGAAAA          GTGCTTAGC AATATA ACTAAGCAC           TTTTTTGTTAATTGG  88 72
JHX98_RS08105 1586525 .. 1586565 -    -4  -4.97957   CACACAATAATAAAA  GCGGTAAAGAAAAGGACC ATAAA AGACCTTATCTTTATCAC  TTTATTTCATAGTAT  70 329
JHX98_RS08100 1585494 .. 1585518 -  -4.3  -5.38951   AACTCATATAAAAAA          GACAAGTTC CTTAAGC GAGCTTGTC          TTGAGTCTAAAAGAA  79 56
JHX98_RS08090 NONE
JHX98_RS08085 1582185 .. 1582224 - -17.5   -5.3236   ATAACTTATAAAAAA  GAACAGCCATCTCATTT GATTCA AAATGAGATGGCTATTC   TTTTTTCACTTATAA 100 133
        dinB 1578438 .. 1578487 - -12.3  -4.43307   GCTGTAATAAAATAA TGGACCAAAGAAGCTGATTAGGG AAAT CCCTAATCAGCTTCTTTTTTCTC CAAAATGAGGCGGAC 100 60
JHX98_RS08050 NONE
JHX98_RS08045 1572774 .. 1572803 -  -7.3  -4.41348   TTTCTCGTAAATAAA       GAACCTAAAGGTGA AAC TCA-CTCCAGGTTC       TTATATTAGTCACAA  78 48
JHX98_RS08040 NONE
JHX98_RS08035 NONE
        trxA 1569401 .. 1569437 - -18.3  -3.56161   GAAGTTAGTAGATAA    TAAAATAAAGCTCAGCG TGA CGCTGGGCTTTATTTTA    GTTAACTCAATTCAG 100 27
JHX98_RS08015 1566864 .. 1566883 -  -6.4  -2.70932   CTTTTGGTCTAATGA            CTCACTAC TTTT GGAGTGAG             TAAGTGAGGTATACT  57 150
JHX98_RS08010 1566550 .. 1566563 -  -3.1  -2.60723   TTAGTTGGAATTAAG               CGTCA AGTT TAACG                ATCATGTGACGAAGA  43 7
JHX98_RS08005 1566026 .. 1566037 -    -3  -2.52676   TATTCGTTCAACCCA                TTCT GACT AGAA                 TGGAAGATCGTCATC  42 20
JHX98_RS08000 1565603 .. 1565619 -    -8  -5.32565   TAATCAACTAAAAAA              CAGTCC GAAAT GGACTG              TTGGTTTATTAGTCT  90 34
        uvrA 1560710 .. 1560727 -  -7.7  -4.98616   TTAAAAGATTAAAAA             GGAGCTC AAAC GAACTCC              TAATCCTATTGTTGT  88 31
JHX98_RS07980 NONE
JHX98_RS07975 NONE
         efp NONE
JHX98_RS07965 NONE
        nusB 1557408 .. 1557454 - -18.3  -4.17023   CTAATTACTCTAAAA GACAAACAAGCATACTCTTTC TAGAT GCGAGAGTATGCTTGTTTGTC TTTTAATATTCGTAC 100 86
JHX98_RS07945 1552814 .. 1552831 -  -2.7  -4.46926   CATGGCAGGACAAAA             GAGCT GCTTAGTT AGCTC              TTTTGTCCTTATTTG  60 34
JHX98_RS07940 1549510 .. 1549548 - -12.7  -4.54477   TCAAAACCTATAAAA   GACTAAAAATCTGGGAC TATTC ATCTCAGATTTTTAGTC   TTTTGGTTAATCAAT 100 114
JHX98_RS07935 NONE
        manA NONE
        secA 1544719 .. 1544755 - -11.7  -3.79071   GTTAGAAGATTTAAA    CAGTGAGAAGCTGAGAA TTA TTCTCAGCTTCTTTCTA    TATACCTAACTTTGT  90 58
JHX98_RS07920 NONE
JHX98_RS07915 1543225 .. 1543237 -  -2.7   -3.0263   ATGATTTTCTTAATA                TATCC GAG GAATA                CGGTCACTTAAAAGG  43 7
JHX98_RS07910 1541474 .. 1541500 -  -9.5  -6.17268   TCACAATAAAAAAAA         GACAATAGCCC TAATC GTGCTATTGTC         TCAAAATCATTTATT 100 128
         shr 1537165 .. 1537177 -  -3.4  -3.61774   TATAACATCTCCAAA                TGTG AAAAA CACA                CCTATCTTGCGACTA  50 133
JHX98_RS07900 NONE
        isdE NONE
JHX98_RS07890 NONE
JHX98_RS07885 NONE
JHX98_RS07880 NONE
JHX98_RS07875 NONE
JHX98_RS07870 NONE
JHX98_RS07865 NONE
JHX98_RS07860 1527170 .. 1527204 - -11.5  -2.60508   GAGGTCTCAAAAATC     CCGAGTGGCGTCAAT CTCGT ATTGACGCCACTCTT     TTACCACAGCAAAAA  83 228
        recG 1524778 .. 1524793 -  -4.6  -3.92996   TCTTACACATAATAA              CATCCG TAAA CGGTTG               TGACAAGTTCTTCTT  59 249
JHX98_RS07850 NONE
JHX98_RS07845 1522775 .. 1522802 - -12.9  -3.85817   AGCTTCCTGTAGAAA        TGTCCCACTAA AACATA TTAGTGGGACA         TTTCTAGTACTTTAA  95 328
JHX98_RS07835 1520240 .. 1520250 -  -3.2  -4.71318   AACACCAAAAAACAA                 GCAG CAT CTAC                 AACGAAATTGCTTGT  65 106
JHX98_RS07825 1518144 .. 1518157 -  -4.5  -3.39948   TTATAACAAAGCTAA               CTCGC TTTT GCAAG                GAATTATCAGAAAAT  53 179
        codY 1517278 .. 1517296 - -10.4  -5.28683   ATTAACAGCAAAAAA             CATCTCTT GAA AAGAGATG             TTTTCTTTTTCTATT 100 40
JHX98_RS07815 1516536 .. 1516546 -  -3.2  -3.02739   CCTAACCCATACATA                 CGGT AAA ACCA                 CATAGAGCAATGATT  45 89
        gatC NONE
        gatA NONE
        gatB NONE
JHX98_RS07790 1512099 .. 1512118 -  -2.2  -4.25104   CGTGCCTGAGTAAAA            TAGAAAAA CAAT TCCTTCTA             TTAAGATAGATAGAC  54 104
JHX98_RS07785 1511709 .. 1511734 - -13.3  -5.02074   TTATGTTGCAAAAAA         GGCTGCTTGGA AACT TCCATGCAGCC          TTTTTTTAATACCTT 100 31
JHX98_RS07780 NONE
JHX98_RS07775 NONE
JHX98_RS07770 1509313 .. 1509339 - -15.4  -5.63857   AAAAACTCAAAAAAA         TTAGCACTCTTT TAT AAAGAGTGCTAA         TTTCAGTCATAGTTT 100 28
        hrcA NONE
        grpE NONE
        dnaK 1505534 .. 1505555 -  -8.8  -4.67353   TTATTTAGCCAAAAA           CAGAGGTT TGGTAC AACCTCTG            AATTCGGATATTAAT  93 61
        dnaJ 1504128 .. 1504163 -  -5.5  -6.02914   TTGACATAAAAAAAA    CGTATAACTTCGGGA AAATTA TCCTGAGATTATACG     TTTGACATCTTTAAA  93 36
JHX98_RS07745 1503113 .. 1503125 -  -4.9  -3.52963   TCCTAACAATAAAAC                TTTGA CAG TCAAA                TTATATCAGAGTTAA  57 62
JHX98_RS07740 NONE
JHX98_RS07735 1501659 .. 1501671 -  -7.7  -3.85817   ATTTGTTTTTATAAA                TGTGC TAG GCACA                TGAATAACTAGATTC  73 33
JHX98_RS07730 1501225 .. 1501237 -  -4.9  -3.93867   AAATAAGGAGAATAA                TTTGA TAA TCAAA                CTATTATAGTAAGAA  62 182
        fabK NONE
        fabD NONE
        fabG NONE
        fabF NONE
JHX98_RS07705 NONE
        fabZ NONE
JHX98_RS07695 NONE
JHX98_RS07690 NONE
JHX98_RS07685 1493105 .. 1493134 - -10.8  -2.82317   TAAATAATAAACTCA       CCCCAGAGATCA TTAAAG TGATTTCTGGGG        TTTACTATTTTAAAG  81 220
JHX98_RS07650 1485120 .. 1485147 -  -2.8  -6.00086   ATATCAGAAAAAAAA        CATACTTCCAAGC ACT ACCTAGAAG-ATG        ACTCAAATAAGGTAT  91 127
        tsaE NONE
JHX98_RS07640 NONE
JHX98_RS07635 1482832 .. 1482855 -   -11  -5.19879   TTTTAAACATAAAAA          CCCTCAGAAC GTTA GGTCTGAGGG           TTGATATTAGCAGGA 100 13
JHX98_RS07620 NONE
JHX98_RS07615 NONE
JHX98_RS07610 NONE
        trmB 1478581 .. 1478603 -  -6.4  -3.78775   CTCTCCATTACTAAA           GAAGTTAATA CTG TATCAACTCC           TTTATGTTATCATAT  66 58
JHX98_RS07600 1478389 .. 1478410 -  -8.7  -4.68724   CCACTTAATACAAAA           GTGGCGAGA CATA TCCCACCAC            CTTTCTGTATTATTT  93 100
        rimP 1477730 .. 1477742 -  -3.3  -3.20307   TTAATACGATCAATA                GCCCC CTA AAGGC                TCCCTTAATTCCTTT  47 124
        nusA NONE
JHX98_RS07585 NONE
JHX98_RS07580 NONE
        infB 1472843 .. 1472871 - -12.5  -4.13014   TCCACATTTTTAAAA        CAAAAGCTAGGCT GAA AGCCCAGCTTATG        ACATTGCTACCTGTT 100 175
        rbfA 1472411 .. 1472435 -  -7.9  -5.03201   AATAACAATTAAAAA          GAGCTCTATCA TAA TGATAAGGCTC          TTTCTATCATAACAT  88 55
JHX98_RS07560 NONE
JHX98_RS07555 NONE
JHX98_RS07550 1467922 .. 1467933 -  -4.4  -4.67011   AATTCTATTGAAAAA                TACC TCTT GGTA                 GATAACCAAAAATTC  72 382
JHX98_RS07540 NONE
JHX98_RS07535 NONE
JHX98_RS07530 1464696 .. 1464720 -  -8.6  -4.63218   TTTCTTTCAAGAAAA         GCGCT-TGCGG GTAC CCACAGAGCGC          CTTGCCTTACATGAG  89 136
        lacA NONE
        lacB NONE
        lacD 1462020 .. 1462048 - -11.2  -5.37345   TGTAAGGATAAAAAA        GCAAGGATAAAA CCCAT TTTCATCCTTGC        TACAAAAGATTCAAA 100 102
JHX98_RS07505 NONE
JHX98_RS07500 1460445 .. 1460477 -   -18  -3.14132   GCTTGCCTCTATTAA      CGTAAAAAGGTTCC TTTTG GGAACCTTTTTACG      TTAATAGTTAGTCTT 100 33
JHX98_RS07490 1458629 .. 1458645 -  -4.5  -3.55966   TCATCAAAAGAGTAA              TACAAAA GTT TTTCGTA              AAATCAATCAATAAA  55 137
JHX98_RS07480 1456038 .. 1456065 -   -10  -5.08824   TTTGGATTCAAAAAA        GAAAACGTGGAT GATC ATTCACGTTTTC         TCTTTTTTTAAAGCT 100 33
        nagA 1454755 .. 1454802 -    -2  -5.22481   CATAAAGAAAGAAAA TACAAAAAGAATTGGCCTGCCA GACA TAGCTACCCCAATCCTTTTGTA TCTCTTAGGCATCAA  70 30
JHX98_RS07470 1453811 .. 1453834 -  -6.8  -5.00884   ACCGTTTTCAAAAAA          GATTTAGCGA ATTA TGGCTAAATC           TTTGTAGTTTCTTAA  83 37
JHX98_RS07465 1452921 .. 1452970 - -17.3   -5.1675   CTAGGCACCAAAAAA CCGCATTTTGATGCTCCTAAATC ATAA GACCTAGGGGCGTCAAAACGCGG TTCCACCCTAATTTA 100 233
        glyQ 1451680 .. 1451704 - -13.1  -2.78798   AGGGGGGACGCAAAG          TGAAATTATCC AGT GGATAATTTCA          GAAAACAAAAGTGTT  87 210
JHX98_RS07455 NONE
JHX98_RS07450 1449032 .. 1449058 -   -11  -3.99592   AGTCATCACGATAAA         CAAAAAGCAGTT CAG AGCTGCTTTTTG         TCTTATGATTTTGGG  93 28
JHX98_RS07445 1448391 .. 1448432 - -13.2  -4.81644   CAAAGAAAATCAAAA GACCCAACAATCACTCTG CTAATC CAGAGTCATCATTGGGTC  ATAAAGAGAACTAAG 100 135
        glpK NONE
        glpO NONE
JHX98_RS07430 1444057 .. 1444092 -  -4.8  -5.38054   TCCTATAAAGAAAAA    GCAAAGGAGCTGGCCTA TGA TA-GCCAACCCCTTTAG    TGATGGTTAGGACAT  80 32
JHX98_RS07425 NONE
JHX98_RS07420 1441162 .. 1441177 -  -6.2  -2.98282   ACCAAGTATCACACA              GTTTTG TGTG CAAAAC               TAGACTTAGCTGCTG  57 3
         fsa 1440349 .. 1440377 -  -4.5  -3.44124   ACGATGAATATAAGA        GAGCCTGTTGACA CAG TAGCCACAGACTC        TTTAGCCTTATTTTT  53 33
         tkt 1438141 .. 1438166 - -13.5  -5.44119   TTTATTTTAAAAAAA         CAGAGTAAATC ATTT GATTTACTCTG          TTTGGGATGTGTAAC 100 41
JHX98_RS07405 NONE
JHX98_RS07400 NONE
JHX98_RS07395 1435281 .. 1435296 -  -6.8  -4.95758   ATTATAGCATAAAAA              CAGCCC CAGA GGACTG               TTTTTCCGAATAATG  83 52
JHX98_RS07385 NONE
JHX98_RS07380 NONE
JHX98_RS07375 NONE
        rsmH NONE
        ftsL NONE
JHX98_RS07360 NONE
JHX98_RS07355 1428008 .. 1428023 -  -4.7    -3.317   AGAGACAAGCAAAAG              GAGTG GGACAA CACTC               ACAAAATCAGCATTT  54 113
JHX98_RS07350 NONE
JHX98_RS07345 NONE
JHX98_RS07340 1424826 .. 1424843 -  -5.5  -4.99312   AACATAACAAGAAAA             GCCCAGG AATA CCTAGAC              CTTTTTATTATAACA  77 52
JHX98_RS07335 NONE
        trxB NONE
JHX98_RS07325 1421917 .. 1421928 -    -3  -3.93695   GCTAGGATTTAGAAA                TAAC TTGA GTTA                 TCGCTAAAGTAAAAA  55 110
JHX98_RS07320 NONE
        nadE 1419507 .. 1419522 -  -7.6   -5.4505   TTCTTCAAGAAAAAA              GTTAGG ATAA CCTAAC               TTTTTTTGTTTTCTT  93 65
        pepC 1417668 .. 1417694 -  -9.4  -5.33026   TAATCTAAATAAAAA         GCGAGTCCAC GTTCTGT GAGGACTCGC         TTTTTATATGACACA 100 371
        gpsB NONE
        rnpB 1413357 .. 1413372 -    -9  -5.04868   TTAAATCAAATAAAA              GCTAGC AAGT GCTAGC               TTAACCTATTATGCA  95 44
JHX98_RS07280 NONE
JHX98_RS07275 1410653 .. 1410676 - -10.4  -5.30155   TTATTAATCAAAAAA          CTGAGACAAG TTGC CTTATCTCAG           TTTTTTTGATTTTCT 100 40
JHX98_RS07240 1404113 .. 1404123 -  -2.6  -2.55551   CACAATTCCAATTCA                 TTTT TAA AAAA                 ATTAACATCTGGGCC  41 56
JHX98_RS07235 1402392 .. 1402417 - -13.5  -3.92641   AAGGCTAGTCATAAA         GAAAAAGAGGA TAAT TCCTCTTTTTC          TACTTGGCATAATCA 100 25
         gmk NONE
JHX98_RS07225 1401321 .. 1401343 -  -8.6  -5.32699   CTAAATATGAAAAAA           TCTAAGATTT CTG AAACCTTAGA           TTTTTTCTCCTTCTT  95 21
JHX98_RS07220 NONE
JHX98_RS07215 NONE
        rsmB NONE
JHX98_RS07205 NONE
        pknB 1393861 .. 1393903 -  -7.9  -4.68994   ACGAGTAGTTAAAAA GAATAGTTAGTGGCATGCC AGTAA AACATGAGACTAACTATTC TTTGTTAAGGTGTTT  83 30
JHX98_RS07195 NONE
JHX98_RS07190 NONE
JHX98_RS07185 NONE
JHX98_RS07180 NONE
JHX98_RS07175 1389631 .. 1389659 -  -3.1  -5.69793   AGACGAAATAAAAAA        GGGTTTGGAAC TACTAAG GTTCCAGACTC        TTTTTAGTGTTCTTT  82 10
JHX98_RS07160 NONE
JHX98_RS07155 1385898 .. 1385917 -    -5  -3.14848   TGCTTTCATGAAAAT            TTGCAAGT TTTA ACGTGCAA             TTGACAAACTTTTAA  52 15
        raiA 1385025 .. 1385048 -  -4.6   -6.4275   GAAAAAGAAAAAAAA          CGCGCTTT ATATTCTG AAAACGCG           CTTTTTCATATTTTT  95 256
JHX98_RS07145 1382764 .. 1382777 -  -2.3  -3.06796   TCCCAGCTGAGCTAA               GGCCC CACA AGACC                TCTCAAAACTAAATA  42 69
JHX98_RS07140 1382591 .. 1382623 -  -9.1   -3.3972   GTAGAAAATTAGGAA      TCTGACCATGTGTGC CTT GCACACAAGGGAAGA      TTGTCTATTTTCCTA  79 97
JHX98_RS07135 NONE
         rrf NONE
JHX98_RS07125 NONE
JHX98_RS07120 NONE
JHX98_RS07115 NONE
JHX98_RS07110 NONE
JHX98_RS07105 1378790 .. 1378808 -  -4.5  -2.70932   CGTGCGCTCTAACCA             CCTGAGC TACGC GCCCAAG             CTAATAGCTTGGAAA  47 56
JHX98_RS07100 1378714 .. 1378724 -  -2.6  -3.44586   ACCAACGGACCATAA                 TAAT ATA ATTA                 TAAATAATGGGCACG  47 32
JHX98_RS07095 1378541 .. 1378570 - -13.9  -5.44198   AAGAAACAATAAAAA       GCTTAAATTTGTT ATAC AACAAATTTAAGC        TTTTTATCATTAAAA 100 90
JHX98_RS07055 NONE
JHX98_RS07050 1370855 .. 1370874 -  -6.6  -3.58905   ACTTTTTATATACAA            TATATTGA TTTT TCAATATA             GTCTTGATATAATAT  64 460
JHX98_RS07040 NONE
JHX98_RS07035 NONE
JHX98_RS07030 1370079 .. 1370090 -    -3  -2.61322   ATATCTTCTAAATAC                TGAT TATC ATCA                 CCATTTGTTCGGTAG  43 65
JHX98_RS07025 NONE
JHX98_RS07020 NONE
JHX98_RS07015 NONE
JHX98_RS07010 NONE
JHX98_RS07005 NONE
         ssb NONE
JHX98_RS06990 NONE
JHX98_RS06985 NONE
JHX98_RS06980 1365101 .. 1365112 -  -2.2  -4.09685   TCTTATCTGCTAAAA                CGTC ATCA GACA                 TCTTTATTTTGCATC  54 137
JHX98_RS06975 NONE
JHX98_RS06970 NONE
JHX98_RS06965 NONE
JHX98_RS06960 NONE
JHX98_RS06955 NONE
JHX98_RS06950 NONE
JHX98_RS06945 1361798 .. 1361814 -  -5.1  -3.25787   TATCGAACAGGAACA              GTCGG AATCGAA CCGAC              TTGCAACCGTTGTCC  54 506
JHX98_RS06935 1359628 .. 1359643 -  -4.6  -3.10775   ATTCGTAGTTAAAAG              GGCGTC TAAT GACGTC               TTTTTGTTTATTTGA  50 58
JHX98_RS06930 NONE
JHX98_RS06925 1356705 .. 1356717 -  -4.9  -3.54741   TATTAGCTTGCCAAA                GATAA GGA TTATC                GGCTAAGCTCGCTGA  57 174
JHX98_RS06915 1355084 .. 1355106 -  -9.2  -5.37345   TTTAAGTACAAAAAA           GCACCTAGCT TTT AGCTAAATGC           TCTAGATTTAATAAG 100 60
JHX98_RS06910 1354733 .. 1354748 -  -5.4  -5.21236   AAGGCATAATAAAAA              GCCGTA TTGC TACGAC               TTTGACTTCTAAAGG  82 65
JHX98_RS06900 1353180 .. 1353193 -  -2.3  -3.18383   ACCTCCATCGACTAA               GACTC GAGA GCGTC                ATCTTCCTCTCTCTT  44 58
JHX98_RS06895 NONE
JHX98_RS06890 NONE
JHX98_RS06885 1352021 .. 1352075 -  -5.1  -4.62069   GTTTGATTTTAAAAA TAGGGATACAGTGCTGAAAGCTC CTATTTATC AAGCTTTTTCCTCTGTATCCCTA TTATATCTCAAGCCC  69 1
JHX98_RS06880 1351581 .. 1351603 -    -7  -5.14563   TTTTTCACTAAAAAA           GACGATAGTT TTT ATCTATCGCC           CTTGGTAACCATTTT  88 52
JHX98_RS06875 NONE
JHX98_RS06870 1349847 .. 1349869 - -13.4  -3.21218   ACTGTCTACCACCAA           GGGTGTCGTG TTT CACGACTCCC           TTATCTTCTTCCGCA  93 180
JHX98_RS06860 1347501 .. 1347529 -    -9   -5.5112   TTGAGTAATAAAAAA        GCAGCAAATCTA TTTTT TAGACTTACTGC        ATTCTTGTAATAACC  95 19
JHX98_RS06855 NONE
JHX98_RS06850 NONE
JHX98_RS06845 NONE
JHX98_RS06840 NONE
JHX98_RS06835 NONE
JHX98_RS06830 NONE
JHX98_RS06825 NONE
JHX98_RS06820 NONE
JHX98_RS06815 1339478 .. 1339504 - -10.2  -3.41024   GTTTTCAATATAAGA         GGGCGAAAGA TTTTCTC TCCTTCGCCC         TGTGTTTTACAGCAA  85 59
JHX98_RS06810 NONE
JHX98_RS06805 1330240 .. 1330254 -  -7.1   -3.5754   AAACAGTTAAATTAA               GCGAC TTCAT GTCGC               ACCCACAAATATGCA  68 7
        ltrA 1327960 .. 1327987 -    -4  -3.61398   TTTCCCCTCTAAGAA        CCGTGCATGAGA GTTT CCCCTCACACGG         CTCAAGTTTTTATAA  52 48
JHX98_RS06790 1325490 .. 1325513 -  -4.7  -5.80364   ATTGCAAGAAAAAAA          GAATAC-CCT TATGC AGGAGTATTC          TTCCTCAAAATTGAC  95 177
JHX98_RS06775 1322948 .. 1322980 - -15.1  -3.66908   TTGTCTTAAAACTAA      TACAAGGAAAACACC ATT GATGTTTCCCTTGTA      AAATACTTATATTTT 100 49
JHX98_RS06770 NONE
JHX98_RS06760 NONE
JHX98_RS06755 NONE
JHX98_RS06750 NONE
JHX98_RS06745 NONE
JHX98_RS06740 1313641 .. 1313656 -  -3.2  -3.99236   GGCACAAAAAACTAA              CCCCTC CTAA AAAGGG               ACATCTAATTATTTG  55 225
JHX98_RS06735 NONE
      tet(M) 1311433 .. 1311448 -    -4  -2.88544   TTTTATTTCCACAGA              TGGG-AC ACA GTACCCA              CTCACAGTTTATAAT  46 137
JHX98_RS06725 1311243 .. 1311284 -  -4.5   -4.3277   TATACATAACAGAAA GAGTCGATAAGATGAGA TTTTGATT TCTCAAATTATCGGCTC  TGCGTCTTTGCGTCT  64 16
JHX98_RS06715 NONE
JHX98_RS06710 1309581 .. 1309639 - -11.3  -2.60309   TTTCAAAGAACAGAT GGCTTGTCAGCCTATCAAAACATACTG AAAGA CAATATGCTTTGATGGAATAACAAACC TCCCCAATCGGGAAG  83 88
JHX98_RS06705 NONE
JHX98_RS06700 1307608 .. 1307642 -  -4.4   -3.7795   TTAAATCTCATTAAA    TGCTCGCAAATCCTT ATTCTA AAGGGCTT-CGAGCA     TTTTTACTGTTGGAA  57 121
JHX98_RS06695 1307162 .. 1307175 -  -2.4  -2.71422   CATTTTCATAAATAC               GTGA AATCAA TCAC                TTTATCACAAACTGA  40 2
JHX98_RS06690 1306468 .. 1306493 -  -5.5  -4.20516   CTCTTACCGAAGAAA         GTAAAGGAG-GT CAA ACTCCCCTTCAC         TTTACATAAGGAAAA  66 66
JHX98_RS06685 1305705 .. 1305752 -  -2.3   -3.5147   TAGACATAACAAAAC CTCCAAACTTTCATAT-TCT TTTTTAAGG AGAAATATGATAACTTGGAG TCTTTCAGCTCTTAT  45 112
JHX98_RS06680 NONE
JHX98_RS06675 NONE
JHX98_RS06670 NONE
JHX98_RS06665 1299698 .. 1299722 -  -3.5   -3.6502   CATTTGTCATTTAAA          TCCCACCCTTG TGT CAAGTATTGGA          TACATATTTTTTTCA  50 64
JHX98_RS06660 NONE
JHX98_RS06655 1298807 .. 1298837 - -13.5  -5.00616   TTCCTCCTTAAAAAA       TATAAGGTTGAGC AGTTA GCCCAACCTTATA       AAACCTCACTTGGGA 100 21
JHX98_RS06650 NONE
JHX98_RS06645 NONE
JHX98_RS06640 NONE
JHX98_RS06635 NONE
JHX98_RS06630 NONE
JHX98_RS06625 NONE
JHX98_RS06620 NONE
JHX98_RS06615 NONE
JHX98_RS06610 NONE
JHX98_RS06605 1287165 .. 1287175 -  -5.4   -3.6692   GGCCAGTGGAAAATA                 TAGC ACC GCTA                 TTGCTATGATGACGG  59 67
JHX98_RS06600 1285868 .. 1285888 - -11.8  -4.23988   GGATACCAAAAAACA            GCCCCCGC AAAAA GCGAGGGC            ATTTGTCTTATCTAA 100 37
JHX98_RS06595 NONE
JHX98_RS06590 1284352 .. 1284373 -  -9.4   -5.5208   TTATAACACAAAAAA           CCGCCCTC AATCAA GAGAGCGG            TTGGCTTTTTATTTA 100 34
JHX98_RS06575 1282364 .. 1282376 -  -4.8  -2.57132   TTGTGGCTTTACAAT                GTCG TTCCT CGAC                TATTCCCCGACTTCT  49 55
        rlmD 1280724 .. 1280740 -  -2.3  -3.27298   TTTTTTAACCATGAA              TGTTTCT AAA ATAAACA              TAGAGTTATCAATAA  44 145
        rocA 1278776 .. 1278801 - -11.9  -4.74453   TAACATATTCAAAAA         GAGTCTGGGAC TATT GTCTCAGACTC          TTAAGTTGATTTTGA 100 63
JHX98_RS06550 1273534 .. 1273547 -  -4.5  -3.06796   CTTTACCTGAGCTAA               CCAGC TCAT GCTAG                TAACATCTTTTTTAG  50 37
JHX98_RS06545 NONE
JHX98_RS06540 1270252 .. 1270292 -  -9.7  -3.81557   CTTTCCAAAGAAATA  CAAGAGCCTCGATCCTCTT AAC ATGAGGAAAAAGGCCCTTG  TTTAATCATTGGTAA  83 80
JHX98_RS06530 NONE
JHX98_RS06525 1266728 .. 1266743 -    -9  -3.34332   ACGATTAGATAAAAT              CTGGTC TTGT GACCAG               TTCCTTAAGTCCTAT  75 37
JHX98_RS06520 1265181 .. 1265200 -  -7.8  -4.81212   CTCATCAGAAGAAAA            GAGCTGAG ATTT CCCAGCCC             TCAACTTATAATCAA  83 54
JHX98_RS06515 NONE
JHX98_RS06510 NONE
JHX98_RS06505 NONE
JHX98_RS06500 1257581 .. 1257607 -  -5.8  -3.57561   TTTCAACCTTGTAAA         GGCGCCTTTCAC GTA ATAAAGGACGCC         TATTTGTTTTTTATT  62 102
JHX98_RS06495 1256660 .. 1256678 -    -3  -4.58685   AAAGTTCTTTAAAAA             GGGTTGAG TTA CTCATCAC             CTAAAAGAGGTTTAA  62 15
JHX98_RS06490 NONE
JHX98_RS06485 NONE
JHX98_RS06480 1254896 .. 1254918 - -11.4  -4.74706   TTGAATACGTAAAAA           GAGAAGATGA GCG TCACCTTCTC           TTTTGCTTTTCCATA 100 70
JHX98_RS06460 NONE
JHX98_RS06455 1251256 .. 1251282 - -13.8  -4.17906   AATGAAACCAAATAA         TCCCTGCCTAGA TAA CCTAGACAGGGA         CGAATTTCGTGTTAC 100 240
JHX98_RS06445 NONE
JHX98_RS06440 1247621 .. 1247656 - -10.5  -4.87807   TGAATATAGCAAAAA    GCCCTGTCGCTTAGAC TGATG GTCTA-GCGGCAGGAC    TCTGCGGAAGCAATG 100 52
JHX98_RS06430 1245276 .. 1245290 -  -4.2  -3.07192   AAGGGGTGGAATACA               CAAGTC AAA GGCTTG               AGAATCACTTTCACT  50 47
JHX98_RS06425 1244196 .. 1244222 -  -5.8  -4.69027   AAAGGCATGTAAAAA         CCCGACCTCTCT TTT AATGAGATCAGG         TTCATGACGAAAATC  77 91
       ccdA2 NONE
JHX98_RS06415 NONE
        msrB 1241510 .. 1241525 -  -7.5  -3.87815   CCTTATCTTTATAAA              GGGCC TTGCAT GGCCC               TCTCATACTAGTCTT  73 73
JHX98_RS06405 NONE
JHX98_RS06400 1238974 .. 1238986 -  -7.7  -3.04144   TTCTTATCTCCAATA                CCCTA ACT TAGGG                AAATGGCTGACATGC  66 54
JHX98_RS06395 NONE
JHX98_RS06390 1237038 .. 1237081 - -10.5  -4.75404   AAATCTCATCAAAAA GCGAGTAAACGAA-AACCTA AATGA CAGGACATTCGTTTACTCGC TTTTTTGTTAACCTT 100 68
JHX98_RS06380 1235600 .. 1235613 -  -2.5  -4.62336   ATCTTAGTGTAAAAA               TTTAT ACTT ATAAA                TTAAAATAAGTCAGA  60 75
        arcA NONE
JHX98_RS06370 NONE
        argF 1232433 .. 1232479 - -11.1  -4.83169   ACCTTTTCATAAAAA TAAGCCGTTCTAGTTC-CG-GTC AAG GACACGAGAACCAGAACGACTTG TCATGTAGTTAAAGT 100 119
JHX98_RS06360 1230888 .. 1230898 -  -5.4   -2.6927   AGGTGTGATATAGGA                 TTCC ATA GGAA                 CCTCCTATCTGTTAA  51 37
JHX98_RS06355 NONE
        arcC 1228427 .. 1228460 - -14.9  -4.37711   CTATCAAAGCTAAAA     GAAAAGGCTAATTCT CAAT AAAATTAGCCTTTTC      TAATACTACTATTGT 100 157
JHX98_RS06345 NONE
        rsmD NONE
        coaD NONE
JHX98_RS06330 1225015 .. 1225063 -  -4.5  -5.08824   GTTTTATGTAAAAAA TGATTGAACCCAAAAGACTGGTC AAG GATCTGTCTATCTGGTTCAACCG TTTTTTTATGAGTTA  76 82
JHX98_RS06325 1223585 .. 1223602 -  -2.7   -4.7373   CTATGTTATCAAAAA             GACCTTA AGCT TAAGGTT              AAGAGTTGCATAAGA  63 154
JHX98_RS06320 NONE
        rlmN 1221512 .. 1221533 -  -8.8  -5.37043   AGGCCAGATAAAAAA           CCTAGTCA TTTTAG TGACTAGG            AATATTTTGTCATCA  95 72
JHX98_RS06305 1220071 .. 1220094 -  -6.1  -5.26316   TGATTCCATAAAAAA          GAAGCCAAT TTTATC ATTGACTTC           TTTTATCCTAAGGCA  84 48
JHX98_RS06300 NONE
JHX98_RS06295 NONE
JHX98_RS06290 1218296 .. 1218326 -  -5.5  -3.76534   TTAATAAATTGTAAA       TGTTTTCAGACTT TCAGC AAGTCTGGATACA       GCAAAAAAAGGAATT  61 96
        typA 1216299 .. 1216341 -  -8.1  -3.38581   AGGAACTTGTAAACA CAAAAAGACCTTTAAAAAA TGACT TTTCTTAAATATCTTTTTG CTATTTTATTTAGTT  72 57
JHX98_RS06280 1215928 .. 1215957 -  -9.5  -3.77927   TGAACTATTAAAAGA       GGACTGATATTGTC TAA AACAA-ATCAGTCC       TTTTATCGTATAAAA  81 68
JHX98_RS06275 NONE
JHX98_RS06270 NONE
JHX98_RS06265 1211922 .. 1211943 - -10.3  -5.69473   TATACCATAAAAAAA           CGTAAAATG TTAT CATTTTACG            TTTTTTGTTATATAA 100 125
        ftsA 1210476 .. 1210491 -  -2.6  -3.91084   TTACTTTTAATCAAA              CATACT CCCA AATATG               CCACGAACACGTTCT  53 1
        ftsZ 1209118 .. 1209130 -  -4.1   -2.8372   TATTTGTCAGTAAAT                CCATT ATT AACGG                TTTTTAAAGAATGGA  48 19
JHX98_RS06250 NONE
JHX98_RS06245 NONE
JHX98_RS06240 NONE
JHX98_RS06235 NONE
JHX98_RS06230 1205903 .. 1205913 -  -3.2  -3.10622   AATACTTAGGGAATA                 CGAG ACT CTCA                 TCATCTCCCGCTTGC  45 76
JHX98_RS06225 1202826 .. 1202849 - -13.2  -5.14965   AGCTCTACTAAAAAA          CCATCAGGTC CTAA GACCCGATGG           TTGTCTTCTTACTCA 100 66
JHX98_RS06205 1198846 .. 1198860 -  -7.8  -5.88565   TTGACAATAAAAAAA               CCTGCC TCA GGCAAG               TCTCTTTACTATGTC 100 45
JHX98_RS06200 NONE
JHX98_RS06195 1197276 .. 1197318 -   -24  -3.73968   AAATGCCTTAGCAAA TTATAAAAGGAAGTCCTAAA TCA TTTAGGACTTCCTTTTATAA TTCATAGAACAGATT 100 40
JHX98_RS06190 1195617 .. 1195640 -  -7.4  -4.75309   CTAAAGGTAACAAAA          CAACGACCCC TAAA GAAGTCGCTG           CTATTGAACATTGGA  83 160
JHX98_RS06180 NONE
JHX98_RS06175 1191702 .. 1191721 -  -2.8  -5.98675   CAGAAAAACAAAAAA            GGAAGCCA TTGC TGACTTCT             TATATTCTCTTATGT  91 59
JHX98_RS06170 NONE
JHX98_RS06165 NONE
JHX98_RS06160 NONE
JHX98_RS06155 NONE
JHX98_RS06150 NONE
        recN 1186224 .. 1186250 -  -7.4  -4.09285   TATGAAAATATCAAA         TACCAAACATAA TCT TAATGTTTGGCA         AGTAGTTCACGAGCC  78 13
JHX98_RS06140 1185059 .. 1185100 -  -5.9  -4.64591   TAACGAGATACAAAA CGAGGCAAAAGT-CAACCTT TTC ACGCTTGAACATTTGCCCCG TCTTTTACAACTACA  74 53
JHX98_RS06135 NONE
JHX98_RS06130 NONE
JHX98_RS06125 1182606 .. 1182619 -  -3.9  -3.04322   CTTAATGCTTTAACA               GATAT TATC ATATC                TAAAAAAAGCGATTA  47 67
JHX98_RS06120 1182236 .. 1182272 -  -5.9  -5.47159   CCTGAACACAAAAAA   GCCCACTGCA-CAGGC TGTAAC GCTTGATACAATGGGC    TTTTATCTATGCAAT  86 40
JHX98_RS06100 1179211 .. 1179223 -  -4.9  -2.78384   GTCCTTTCTACTATA                TGATT TAA AATCA                TATAGTGTTTAAAAT  51 34
JHX98_RS06095 NONE
JHX98_RS06090 1178086 .. 1178099 -  -2.4  -3.81951   TTGCACATTAGCAAA               TTGC ACATTA GCAA                ATTAGGTATTAGCAA  50 390
JHX98_RS06085 NONE
JHX98_RS06080 NONE
JHX98_RS06075 NONE
JHX98_RS06070 NONE
JHX98_RS06065 NONE
JHX98_RS06060 NONE
JHX98_RS06055 1175434 .. 1175445 -  -4.4  -3.67976   CCGAGCAAGTCTAAA                CTAG TCAT CTAG                 CAACCTCTTAATTAC  55 14
JHX98_RS06050 NONE
JHX98_RS06045 NONE
JHX98_RS06040 NONE
JHX98_RS06035 NONE
JHX98_RS06030 NONE
JHX98_RS06025 NONE
JHX98_RS06020 NONE
JHX98_RS06015 1170909 .. 1170927 -    -3  -2.65409   GAATTATTAACCAAT             GGTCAGCT GTG AGCTGGCT             TTTTTTGTTTAGTAT  43 34
JHX98_RS06010 NONE
JHX98_RS06005 1169830 .. 1169846 -  -2.3  -2.89569   TTTGCAAATTAAGCA              TTTCTTT TTC AATGAAA              TTCAACCTCCAAAAT  41 168
JHX98_RS06000 NONE
JHX98_RS05995 NONE
JHX98_RS05990 NONE
JHX98_RS05985 1166483 .. 1166503 -  -6.2  -4.77165   TTGGGCATAAGAAAA           GCACC-AGA TTGC TCTAGGTGC            TTAATATATTGCGTT  77 26
JHX98_RS05980 NONE
JHX98_RS05975 NONE
JHX98_RS05970 1165756 .. 1165771 -  -5.4  -5.19328   AGGGCACAATAAAAA              GCCGTA TTGC TACGAC               TTTGGTTTAAGTTGA  79 32
JHX98_RS05965 1164260 .. 1164275 -  -6.8   -5.1861   TTTAGCATTAAAAAA              GCACCC TTTC GGATGC               AATTTTTAACAGCTG  84 31
JHX98_RS05960 NONE
JHX98_RS05955 NONE
JHX98_RS05950 1162620 .. 1162631 -  -5.8  -2.71731   TTTACCTCCTAACCA                GGCA AGAG TGCC                 TCTAATTCAGGTTTC  55 7
JHX98_RS05945 NONE
JHX98_RS05940 NONE
JHX98_RS05935 NONE
JHX98_RS05930 1161325 .. 1161336 -    -3  -3.61715   TATCTCCTTTAATAA                TGAT TAAT ATCA                 AATACAGCTTGATAG  50 7
JHX98_RS05925 NONE
JHX98_RS05920 NONE
JHX98_RS05915 NONE
JHX98_RS05910 NONE
JHX98_RS05905 NONE
JHX98_RS05900 NONE
        hylP NONE
JHX98_RS05890 NONE
JHX98_RS05885 NONE
JHX98_RS05880 NONE
JHX98_RS05875 NONE
JHX98_RS05870 NONE
JHX98_RS05865 1149300 .. 1149321 - -10.8  -4.27297   TTAATAACAAAAACA           GCCCCCGC AAAAAA GCGAGGGC            ATTTGTCTTATCTTA 100 55
JHX98_RS05860 1148046 .. 1148076 -  -8.2  -6.08342   CAACAAATAAAAAAA       GCAAGAGTCGCTAG TGT CAGGCGATTCTTGC       TAAAAAATTCTATTT 100 35
JHX98_RS05855 1147672 .. 1147693 -  -9.4   -5.8187   CATCTAATAAAAAAA           CCGCCCTC AATCAA GAGAGCGG            TTGGTTTATTATTTT 100 34
JHX98_RS05850 1146652 .. 1146678 -  -6.7  -5.04385   TATATTCGTAAAAAA         GCCAAATCT AGTGAGAAA AGATTTGGC         ATGTTTATTATTGAT  84 33
JHX98_RS05845 1146198 .. 1146239 - -11.1  -5.88197   CCAAATATAAAAAAA GAACCTTGTCGCTATCAAT AAAC ATCGATAGCAACAAGATTT  TTCTAGACGAATTAT 100 224
        cadA NONE
JHX98_RS05835 1143762 .. 1143795 - -14.1   -5.1615   TTAATAGTCAAAAAA     GCTTGGAAATGTGCAC TTT GTACAC-TTTCCAAGC     TTTTTAAAATGGGAA 100 29
JHX98_RS05825 1141851 .. 1141866 -    -9  -5.35354   TATAGAACCAAAAAA              CCAGAC CAAA GTCTGG               TTTTTAAGTTATTCA  95 34
JHX98_RS05820 NONE
JHX98_RS05815 1140484 .. 1140515 - -10.3  -5.01732   AATTTCCCTAAAAAA      TG-CAAGCCCTTTC AACAA GAAAGGGCTCGTCA      TTATCATATAACTAT 100 54
JHX98_RS05810 1139360 .. 1139378 -  -6.8  -2.74782   AGAAATCTCTAAGCA             CAAACCAT AAG ATAGTTTG             TACGCCTGATGAATC  57 288
        recR 1138223 .. 1138235 -  -3.3  -3.04715   TAGCCTTTTCAAAAC                CTCTC TTT GCGAG                TAAAGGCACCAACAT  45 46
JHX98_RS05800 1136971 .. 1136986 -  -4.8   -3.8637   TTATAGCACAAAACA              TTAGAA AAAT TTCTAA               AATGTCAAACTCCCT  59 148
JHX98_RS05795 1135494 .. 1135508 -  -2.8  -2.94076   TCATGAGAGAACAAG               CCTTTC TCT GAAAGT               TTTATAAAAATCAAG  42 36
JHX98_RS05790 1134680 .. 1134707 -  -2.6  -5.40072   TCTTTTTTAAAAAAA        TCGAGCCTGGAA ATCA TCCCAGACTCTT         CTTATTATAGCTGAT  76 62
JHX98_RS05785 1132666 .. 1132682 -  -5.1  -4.56597   TCTCTTTTCTAAAAA              GGCAG TGCGAAG CTGCC              TTATAAACCTTTTAA  69 295
JHX98_RS05780 1130990 .. 1131023 -  -9.1  -4.37658   AACTTTTTCAGAAAA     TTAAAAAGAGCTGAC TCTC ATCAACTCTCTTTAA      GCTTATTCACCTTTG  93 28
JHX98_RS05775 1128869 .. 1128893 -    -8  -5.70761   AAAAGAAAAGAAAAA          TCATTGAGAC TTATC ATCTCAATGA          TTTTTTTATGCTTCA  93 31
JHX98_RS05760 NONE
JHX98_RS05755 NONE
JHX98_RS05750 NONE
JHX98_RS05745 NONE
JHX98_RS05740 1122043 .. 1122063 -  -9.8  -5.13521   AAAGCACTTAAAAAA            CCAATCTC TTTTT GAGATTGG            AAACCCTTTTCTTAT 100 37
JHX98_RS05735 NONE
JHX98_RS05730 NONE
        nagB 1117521 .. 1117536 -  -3.3  -3.93868   CTTGCAAAAGAAATA              GAAGT TACAAG ACTTC               TTCTTAAATGAGGTT  55 43
JHX98_RS05705 NONE
JHX98_RS05700 NONE
        pepF 1113603 .. 1113657 - -21.9  -5.40873   AATATAAAAAGAAAA TGACCGATAGAAATGGAGATTCACA CCAAC TGTGAATCTCCATTTCTATCAATCC TAAACTCTTTTTGTC 100 57
JHX98_RS05690 1112074 .. 1112089 -  -4.7   -6.0427   ATTATATAAAAAAAA              CCTAG GCTTTG CTAGG               GTTTACTTTTAAATT  93 53
JHX98_RS05685 1111318 .. 1111328 -  -2.6  -2.60244   TCTTTAACTAATTTA                 TTAT AAC ATAA                 ATTTATCAATGTTAC  41 41
        prsA 1110011 .. 1110025 -  -4.2  -2.54181   CAATACAAAACAAGT               CCATCT CAC AGAGGG               CGAAAACCGCGGTAC  47 226
        alaS 1107189 .. 1107208 -  -6.5  -5.56264   TTCAAATATAAAAAA            CCAAGTT CTAAAT AACTTGG             TTTTTTATGGATTTA  87 38
JHX98_RS05670 NONE
JHX98_RS05665 1105852 .. 1105871 -  -2.2  -3.92542   GCTATTTTTAAATAA            TTAATGAA TCCT TTCATAAA             CAGTCTCCTTTTAGG  52 41
JHX98_RS05660 1104962 .. 1104974 -  -7.7  -2.56164   TTCGCAACTATTAAG                CAAGC TCA GCTTG                AGATTTTTAAATATA  63 224
JHX98_RS05630 NONE
        ptsP 1096387 .. 1096406 -  -8.6   -5.1675   TTAGCTAGCAAAAAA            GAGCTGGT TTAA ACCAACTC             TTTAACCCTTTAATC  95 35
JHX98_RS05620 1094759 .. 1094794 - -14.4  -5.69023   AAAACATTAAAAAAA    TAAACAAAAAGTTAAG TTAA CCTAACTTTTTGTTTA     TTTTTTTTATTACTG 100 35
JHX98_RS05615 1093364 .. 1093399 - -13.6  -4.73388   AAGGGCTACTAAAAA    CAACAATCCAATTACT TCAA AGTAATTGGATTGTTT     AGTATATCAATTCTA 100 61
         udk 1091482 .. 1091504 -  -7.1   -4.9645   AGCACAACAATAAAA           GAGCAGATT TAAAT AATCTACTC           AGCCACTTCCACTAT  88 37
JHX98_RS05600 1090685 .. 1090696 -  -3.6  -3.03124   CCCTATTGTCGAAGA                GCCC ATTA AGGC                 TTCTTCGGCTATTTT  45 502
JHX98_RS05590 NONE
        dnaX 1087961 .. 1087984 -  -6.7  -2.60947   TAACGAGATAAAACG          TGGGTAAGG GCAAAA CCTTACCCT           TATGTATTTCAGTTT  57 40
JHX98_RS05580 1087561 .. 1087585 -    -8  -5.38054   GTTTACAAAGAAAAA          TCACTTGTTC TTAAT AAACAAGTGA          CCTTTATAGAAAATA  93 140
JHX98_RS05570 1084115 .. 1084134 -  -7.9  -5.44119   TTTATTTCAAAAAAA            CCTCAAG GTTATT CTTGAGG             TTCTCTTGATAGTCA  93 93
JHX98_RS05565 1082420 .. 1082448 -  -3.2  -5.64873   TTTAATAACAAAAAA        GCAGAGTAAG ATTTTTTCA CTCACTCTAC        TTTTTTAATAAAATT  82 46
JHX98_RS05560 1081017 .. 1081034 -  -9.9  -5.48063   ATGTAATATAAAAAA             GAGAAGC GTTA GCTTCTC              TTTAGTCTTCGATTA 100 27
JHX98_RS05555 1079793 .. 1079810 -  -6.3  -5.00846   TAAATATCAGAAAAA             GAGAATC TTTC GATTCCC              TTGTTTCATTTGCTA  83 54
JHX98_RS05550 NONE
JHX98_RS05545 NONE
JHX98_RS05540 NONE
JHX98_RS05535 1075875 .. 1075902 -  -6.4    -5.252   CATCCTCATAAAAAA        TGAAGCAAGAAA ATAG TTTCTCACTCCA         CGACTTATTATCTTT  85 47
        aroA NONE
JHX98_RS05525 1073932 .. 1073942 -  -2.6  -2.78738   TCAAAATTTTAATCA                 TTAT AGA ATAA                 TCAAGATTATTTCCT  42 129
JHX98_RS05520 1072350 .. 1072373 -  -8.2  -5.02074   CCATTGCTCAAAAAA          GAAGAGCAAC TTTA GTTACTCTCC           ATTATACCATATCTT  90 39
        rlmD 1070807 .. 1070823 -  -5.9  -3.09349   GAAAGCATAGACACA              CTTAGCT GGA AGCTAAA              TAGCTAGACCTTCAT  57 152
JHX98_RS05505 1069698 .. 1069722 - -11.5  -5.46129   CAATAAAGGAAAAAA          GTCCCAATTCT CAG AGAGTTGGGAC          TTTTTTCCTTTATTG 100 50
JHX98_RS05495 1066467 .. 1066491 -  -7.9  -5.07971   GAAAAGAACCAAAAA          GGTAAGCAATC CCT AAGTGCTTACC          TTTTTGCTTATCTCA  88 98
JHX98_RS05485 1064977 .. 1064990 -  -2.4  -3.66556   AAGTTGGTAACAGAA               GCTT TCAATC AAGC                TTATAATAGAGAAAA  49 268
JHX98_RS05460 1061337 .. 1061381 - -15.4  -4.62054   CGAATCAAAGCAAAA CTAAAAGGATTTAGTCCTGT CCAAT ACAGAACTAAATCCTTTCAA TAATTATTTGTCCAA 100 328
JHX98_RS05450 1059658 .. 1059669 -  -3.6  -5.44119   TTTACTTTAAAAAAA                CGCC TTTC AGCG                 TTTCCTTACATTAAT  79 31
        obgE 1058268 .. 1058292 -  -2.1  -3.31428   CTTAAAGATAACACA          CAAGAGCACTA TCA CACTGCTATTG          TAATGGATTGCCTTA  44 38
JHX98_RS05440 1058068 .. 1058090 -  -9.2  -5.16472   AAAAAGGTCAAAAAA           GGATGAGG GCCTAAG CCTCATCC           TTTTTCAATTTTTCA 100 13
JHX98_RS05430 NONE
JHX98_RS05425 NONE
JHX98_RS05420 NONE
JHX98_RS05415 NONE
JHX98_RS05410 NONE
JHX98_RS05405 1051305 .. 1051318 -  -3.8  -4.20354   AAGGTAACCTTAAAA               GCAG CGGTGT CTGC                CTAACACAATTATCT  59 154
JHX98_RS05400 NONE
JHX98_RS05395 1049613 .. 1049642 - -10.1  -4.62085   ACTTCCAAAAAATAA       TAAGGCAAGGAAA CCTA TCTCCTTGCCTTT        TTTGGTTACTGTTAT 100 109
        uvrB 1044325 .. 1044346 -  -6.7  -2.73903   AAAATTTTTTTAAAG           CTTAACTAT TTAG ACAGTTAAG            TTTTATGCCTTTTTA  57 159
JHX98_RS05375 1044080 .. 1044094 -  -2.2  -4.11484   GTCAATCTCCTAAAA               TTCATT ATA AATAAA               GTTACTTTGACCATG  54 5
        dltA NONE
        dltB NONE
        dltC NONE
        dltD NONE
JHX98_RS05350 1038446 .. 1038503 - -18.1  -4.88918   TCAGCGTAAATAAAA CAAAAGCTCTATAATCTCTTGAATGGG TAAA CCCACTGTAGAGATTATAGAGCTTTTT GAATATCAAAAAAGT 100 279
JHX98_RS05325 1032062 .. 1032084 -  -4.2  -5.40474   AGTTTCCTAAAAAAA           GTAACATTCC TTA AAAATGCTAC           TTTTTTTGCTCTTAA  82 37
        malQ NONE
        glgP 1028106 .. 1028136 - -12.8  -4.41895   AAGTCTGAAGTAAAA       TCATAAGACAGCAG AAA CTACTGTCTTATAA       TTTAGTTTAAGCATG 100 78
JHX98_RS05300 1025911 .. 1025934 -  -6.8  -5.40004   TAGTAAATTAAAAAA          CCGTCTTCCAT CAA ATAGAAG-CGG          TTTATCAAATTAACA  87 48
JHX98_RS05280 NONE
        pfkA 1019590 .. 1019600 -    -4   -3.3164   AACTTATTGTGACAA                 TGAA CGG TTCA                 AAGCTGCAAAGTCTA  49 3
         pyk 1017966 .. 1017988 - -10.7  -5.21709   TTTGATATCAAAAAA           GGTTAGAAG CTTGC CTTCTAACC           TTTAGGTAAATAGTT 100 50
        lepB 1017221 .. 1017246 -  -9.1  -5.71983   CTAATTATAAAAAAA         GTAGAGTAGCC TGAC AACTACTCTAC          TTCTACAAATCCGAA 100 17
        glmS 1015207 .. 1015229 - -12.8  -5.61881   TCCTAAAAACAAAAA           GCAACCACCT AAC AGATGGTTGC           CTTATCCATTATAAT 100 44
JHX98_RS05255 1014688 .. 1014706 -  -8.9  -4.03995   TTTTTTATAAAAATA             CAACCAG ATCAG CTGGTTG             CGTATTATTATTAGA  82 36
JHX98_RS05250 NONE
JHX98_RS05245 NONE
JHX98_RS05240 1012463 .. 1012474 -  -5.8  -5.95539   TGTTAAACAAAAAAA                GGAC AAGT GTCC                 TTTTTAAGATTTAAT  93 29
         cfa 1011057 .. 1011090 -  -8.3  -5.54264   AAATAGTTAAAAAAA     TCCCTACAATTTGTT TTTA AACAGATCATAGGGA      TTTTTTTAAGAATAC  93 270
        pcrA 1005398 .. 1005432 - -13.1  -5.59564   AGAAATCTAAAAAAA     TGAGCTTCCTACT CACTTATAT AGTAGGAAGCTCA     TTTTTTTCTTATTTT 100 34
JHX98_RS05215 NONE
        amaP NONE
JHX98_RS05205 NONE
JHX98_RS05200 NONE
JHX98_RS05195 NONE
JHX98_RS05190 1002629 .. 1002648 - -12.2   -4.8543   TAACCGTGACAAAAA            GAGCTGGT AAAT ACCAGCTC             AAACTTATCACCACT 100 68
JHX98_RS05185 1001866 .. 1001886 -  -9.8  -5.85737   ACAGCAACAAAAAAA            GTTTGAGG TGGGC CCTCAAAC            TTATAATCCTTTTCG 100 26
JHX98_RS05175 NONE
JHX98_RS05170  997665 ..  997680 -  -4.8  -2.96695   CTTTCTATTAAATTA              TAGTAT TTAA ATACTA               CCATAATATGATTAA  52 77
JHX98_RS05165 NONE
JHX98_RS05160  996024 ..  996046 -  -3.4  -5.23316   TATTATAGCAAAAAA           GCTCAGGA AGTTAAG TCCCAAGC           TGTCATAGATAAGAA  74 56
JHX98_RS05155  994621 ..  994635 -  -4.3  -2.51173   ACCAATTTTAGCAAG               GAAAG ACTCA CTTTC               AGGCTTACTGGTCCT  47 30
        truB NONE
JHX98_RS05145 NONE
JHX98_RS05140 NONE
JHX98_RS05135 NONE
JHX98_RS05130 NONE
JHX98_RS05125 NONE
JHX98_RS05120 NONE
        pstC NONE
        pstA NONE
        pstB NONE
        pstB NONE
        phoU  984558 ..  984577 -  -9.4  -3.26546   TATAATAGATCAACA            GATGATAC CTAA GTATCATC             TCTGTCTACATATAT  77 169
JHX98_RS05090  981944 ..  981965 -  -5.1  -5.31275   GCTCACTACAAAAAA           GAGCTGGAA AGTC CCCCAACTC            TTTTGCTTATGGTCT  80 39
JHX98_RS05085 NONE
JHX98_RS05080  979491 ..  979516 -  -6.8  -4.97405   ATTCACAAAAACAAA         GCAAGCCGCG ATAAAG CACGCCTTGC          TGCAAAACTTGGCTA  83 166
JHX98_RS05065  977410 ..  977458 - -15.7  -3.29471   TCTTTACTATATTAA GCAAACCTAATTTAAATGAGCAA TTG TTGATTATTTAAATTAGGCTTGC TTTATACTTCTTAAT 100 16
JHX98_RS05060  976372 ..  976382 -  -4.6  -4.42594   GAAAGTAAATATAAA                 GCCA AGA CGGC                 TAGATAACAGAAATT  64 49
JHX98_RS05055  975222 ..  975243 -  -7.2  -4.62336   ATCTCAGTTTAAAAA           GAGCGACC GACAAA GGTCGCGC            TTCTTGTTCTTAAAC  80 42
JHX98_RS05050 NONE
JHX98_RS05045 NONE
JHX98_RS05040  971400 ..  971422 - -11.4  -5.00412   AAAGACAAGCAAAAA           GAACTAAGCC GCT GACTTAGTTC           TTTTTAGTCTATTCT 100 177
JHX98_RS05015 NONE
JHX98_RS05010 NONE
JHX98_RS05005 NONE
JHX98_RS05000 NONE
JHX98_RS04995 NONE
JHX98_RS04990 NONE
JHX98_RS04985 NONE
JHX98_RS04980  959430 ..  959464 -  -4.2  -4.19371   TAAAGCGGGAAGAAA     GGAGCGCTTGCTCGAA TTA TTCGAGCAATTTTTCC     TAAAAGAGACCGAGG  62 25
         cls  957628 ..  957648 - -12.7  -5.81622   ATAAAATTAAAAAAA            GGATTGAGA ATA TCTCAATCC            AAGGGGCATTCTTAA 100 179
JHX98_RS04970  957048 ..  957075 - -14.4  -5.56568   ATAGTAGCAAAAAAA        TACCTAACAGAT TTTT ATCTGTTAGGTA         TTTAAACCTTATCCC 100 74
JHX98_RS04960 NONE
JHX98_RS04955  953784 ..  953797 -  -8.1  -5.14965   ACTGTCATCAAAAAA               GCCGT CAAA ACGGC                TTTATAGTTATTTCA  90 117
JHX98_RS04950  952071 ..  952084 -  -5.3  -5.74122   CATTAGATAAAAAAA               GATGT AGTC ACATC                TTTTTTTGGTTGGTG  86 152
JHX98_RS04945  950564 ..  950615 - -15.6  -3.42069   TGAATGGGAATAACA GAATGAACATTAAAAGACTCGCTCA TTT TGC-CGAGTCTTTTAATGTTTATTC TTTAACTGTTTTCGT 100 13
JHX98_RS04935 NONE
JHX98_RS04930  946596 ..  946613 -  -8.5  -3.60048   GTTCGTGTAAAAAAG             GAAGTCA TAAA TGACTTC              TTTACTAATTATTTT  77 30
JHX98_RS04925 NONE
         ffh  944589 ..  944608 - -10.8  -4.80882   ATTTCACATCAAAAA            GAGACGAA AATT TTCGTCTC             TTTTATTTTCGTTTT 100 28
        xerS  941860 ..  941871 -  -4.4   -3.6215   CCAATTGATGTTAAA                GAAG CTGT CTTC                 ATGATTCTCTAATAT  55 406
JHX98_RS04905 NONE
        citC  939895 ..  939921 - -12.5  -4.93316   GAACAATACCAAAAA         CCTATCTGATT TTGAT AATCAGATAGG         TTTTTTATCTTAGTA 100 35
JHX98_RS04855  931349 ..  931382 -  -5.4  -4.58663   ATGAGTTCTGAAAAA     TTAAAGCCATGCTC ACAAAA GGACATGACTTTAA      TCATCTCATAAGGAA  71 65
JHX98_RS04850 NONE
        citG  929314 ..  929326 -  -4.1  -3.37761   TGGTAACAAAGTGAA                CCCTA TGA TAGGA                GCAGCAGGTGTTTCA  50 391
JHX98_RS04795 NONE
JHX98_RS04790  918471 ..  918487 -  -5.9  -3.63991   TACCACTTCTAAGAA              TTGATGT CTT ACACCAA              CTCATCACATTAAGC  62 70
JHX98_RS04760  911519 ..  911532 -  -6.7  -5.48213   CAGGCAAAACAAAAA               GAGAC CGAA GTCTC                TTTTGTGATTAGTTT  87 34
JHX98_RS04700  899568 ..  899587 - -13.6  -3.27475   CTTTTTAGCAGAATA            CCCCCACT AAGG AGTGGGGG             AAGGTCATTATGATT  93 33
JHX98_RS04695  898549 ..  898563 -  -7.1  -5.37865   TGAATAATTAAAAAA               CGGCT AATTG AGCCG               TTTTTTCTGTGATCA  89 66
JHX98_RS04665  891752 ..  891765 -  -3.9  -2.81281   CTATTTAAAATCAAG               TTTAG TGAT CTAAA                ATGGAAGGGCCTGAT  46 13
JHX98_RS04635  886593 ..  886614 -    -6  -5.09762   ATTTTAACAGAAAAA           CAGAAAAA TTTCAG TTTTTCTG            TCGCTTTTAGCCATT  83 39
JHX98_RS04630 NONE
JHX98_RS04625 NONE
JHX98_RS04620  883900 ..  883917 -  -7.1   -5.1101   GTATGAGTTAAAAAA             GCTAAAA TTAG TTTTAGC              ACTATATAATAGTAT  88 155
JHX98_RS04615 NONE
JHX98_RS04610  882305 ..  882319 -  -2.8  -3.45027   ATCCTTCAGGAAATA               TTGAAC CTA GTTCTA               ACGATTATTGCTTTA  48 152
JHX98_RS04580  875858 ..  875904 - -19.3  -3.64371   AAGTTATACTTTAAA TCACAAAATAAGTAGAAGCATA TTTC TA-GCTTCTACTTATTTTGTGA TTAGCTAATATCATT 100 26
JHX98_RS04565 NONE
JHX98_RS04560  870905 ..  870923 -  -7.4  -4.60255   ATAAGCCCTCAAAAA             GGCTGG TATTTCT CCAGCC             TTTTTAATGTATCGA  82 50
JHX98_RS04505  861098 ..  861129 - -13.3  -5.73672   AAACAATCAAAAAAA      GACAGTTATGAAA GAATTT TTTCATAACTGTC       TTTTTAGTTTACAGT 100 73
JHX98_RS04485 NONE
        mnmE  855812 ..  855834 - -16.4  -4.82667   TTATGACAGCAAAAA           GAGCTGGAAC AGT GTTCCAGCTC           TTTTGTGATGATTAG 100 50
JHX98_RS04355 NONE
JHX98_RS04350  828187 ..  828219 -  -5.7  -4.76171   GAAAAAACTATAAAA     CTCCTAAGC-GAAC TATCGT GTCCTACTTAGGAG      TTTTTGTTTGATGAC  74 54
       fbp54  807708 ..  807745 -  -7.7  -5.89921   ATCAGAATAAAAAAA   CAGTTCTCCTAGGGGAA ATAA CTTTCCTAGGAGAGCTG    TTTTTTAGTTGCTTA 100 41
JHX98_RS04180  789844 ..  789871 -  -3.3  -5.20216   GAGATTACTAAAAAA        GAGGCCGGCAC TTTAAT GTGCTAGTCTC         TTTTAAATTGATCCA  71 49
JHX98_RS04155  786074 ..  786089 -  -2.6  -5.43487   AAATCATATAAAAAA              GCCTTAT TTG AT-AGGC              TTTTTTTGTTTCTTT  76 354
        plsY  776534 ..  776558 - -11.5  -5.80951   AGTTAAAACAAAAAA          GCTTGACTTTC AGA GAAAGTCAGGC          TTTTAGTAAATTTAT 100 37
JHX98_RS04060  767631 ..  767666 -  -2.5  -5.17353   ATATTTATCAAAAAA    CACGATAACTTGACC GATACA GGTCTTACTACCGTG     TTTTTTTAGTATGAC  69 55
JHX98_RS04025  759686 ..  759718 -  -3.3  -4.05085   AGCGCTAAAAAAAAG      TCCGTCAAGTGTATA ACG TAGTCACAAGACGGA      TTTTTTCATGTTTTG  55 66
JHX98_RS03990 NONE
JHX98_RS03985  752532 ..  752562 - -17.1  -4.10269   GAAACAAAGATTAAA       CACCCATGTAAAC CAATT GTTTACATGGGTG       ATTGCCTTATATTAG 100 51
JHX98_RS03945  743328 ..  743354 -  -4.4    -3.737   TAATTGGCGACCAAA         GCGATTAAGCTT AAC AGGCTTAACTGC         TCAAATATGCCAGCA  56 155
JHX98_RS03905  734832 ..  734864 - -19.5  -4.44046   TCTATTTTAAATAAA      GGATTTAGTTCTGTA CAA TACAGAACTAAATCC      TTTTAGTTTTACTTT 100 499
JHX98_RS03840  723129 ..  723183 - -28.4  -5.12707   TTAAACGCTAAAAAA CAAGCATACCCCTTTTTACAGCATAG TGA CTATGTTGTAAAAAGGGGTATGCTTA TTAGGTGCTCTTAAT 100 89
JHX98_RS03725 NONE
JHX98_RS03720  695013 ..  695024 -  -4.4  -4.09015   AAAACAGACGAGAAA                TTGG ACTA CCAA                 AACGTTGCTACTGTG  61 455
JHX98_RS03690  687923 ..  687946 - -11.2  -5.45652   ATCGCCAATAAAAAA          GAAGCAAAAT TATT ATTTTGCTTC           TAGTCAGATCATTAA 100 46
JHX98_RS03660  684885 ..  684906 -  -6.6  -5.32882   CAGCATGATAAAAAA           GCCCTTAC TCGAGG GTAAGAGC            TTTAGTTGGGCAAGA  85 8
        mscL  664532 ..  664552 -  -6.9   -5.8096   GATAAAAAATAAAAA            CAGTTCTCA CAA TTAGAACTG            TTTTTATTTTTTATC 100 115
JHX98_RS03545  655267 ..  655291 -  -7.9  -5.58179   TATTAGAAGAAAAAA          CCAAACAAGCA CAG CACTTGTCTGG          TTTTTTTCTAAGTGT  93 68
JHX98_RS03380  620399 ..  620417 -  -8.9  -3.63627   TTTTGATACTTGAAA             GTCGTGA TATTC TCACGAC             TTTTTATTAGCTTTT  77 129
JHX98_RS03335 NONE
JHX98_RS03330  610388 ..  610406 -   -11  -5.46706   AGGCCAAAAGAAAAA             CCCTCCTG ATA CAGGAAGG             TTTTTTGTATTGTCT 100 44
         mf2  603951 ..  603973 -  -4.3  -3.90112   TTCTCCTTAATTAAA          TGTATTACTC GTAC GAG-AATACA           TGAAATAGCAGTAAG  59 95
        speC  603185 ..  603206 - -10.1  -4.76963   CGAGATAAGACAAAA           CCGCTCAGA TTAT TCTGGGCGG            TTTTTTGTGTATGAT 100 44
JHX98_RS03165 NONE
JHX98_RS03160  580462 ..  580479 -  -7.7   -5.1101   TTATTATGTAAAAAA             GAACCAC AACA GTGGCTC              TTATGCTTGTAATTT  88 26
JHX98_RS03040  569104 ..  569128 - -11.5  -4.72863   GTAAAGAAACTAAAA          GAAGCCCATCC AAA GGATAGACTTC          AATTCAATGTAAACA 100 57
JHX98_RS03025  566985 ..  567002 - -11.3  -3.41745   TGGTGACAATATCAA             GAGGGCT AAGA AGCCCTC              TCCCCTAACGGGGTA  89 351
JHX98_RS03015 NONE
JHX98_RS03010  565367 ..  565377 -  -3.2  -4.57569   TTACCGCCTGAAAAA                 CCTG CAT CAGA                 GTAGTTTTTGTAAAT  62 280
JHX98_RS02965  553468 ..  553512 - -14.6  -4.90381   TTCAAGAGAAGAAAA GCACCCCAAAAGTTAGAT GTTTGATGT ATCTAACTTTTGGGGTGT CATTCAAAATTTAGT 100 111
JHX98_RS02915 NONE
JHX98_RS02910 NONE
JHX98_RS02905  542066 ..  542081 -  -4.8  -4.15222   AGTGCTTGTAACAAA              TTGATA TCCA TATCAA               TCTCCTTTATTCATT  64 39
JHX98_RS02900 NONE
JHX98_RS02895  540425 ..  540476 -  -6.7  -5.07652   CTTTCCAAAAGAAAA GAGACCTCATCATGTGCTTAGGAA CTATT TCCCTATGCTCATAAC-AGGCCTC TGTGAACCATTAAGC  84 35
JHX98_RS02890 NONE
JHX98_RS02885  537362 ..  537385 -  -9.7  -4.19472   TAATAGACGCTAAAA          GGTTTGAGA TAATTG TCTCAAACC           TTTTTTTATAATCGT  93 73
JHX98_RS02870  532371 ..  532398 - -14.4  -4.90266   TGTAGTAACTAAAAA        GATTGAAGAAAG TACT CTTTCTTCAATC         TTAGAATGGAGGCAA 100 296
        yidA NONE
JHX98_RS02860 NONE
JHX98_RS02855  528858 ..  528903 -   -18  -3.34013   GATTTCCTTAACTAA GTCATCTAAAAAAGAAAAGG TTAAAT CCTTTTCTTTTTTAGATGGC TTAACTCTTAATATG 100 78
        pepF NONE
JHX98_RS02825  519598 ..  519639 - -22.1   -2.8742   TTTAAATAGTAACTA TAATACAAAATAGACTTGG CACG CCAAGTCTATTTTGTATTA  ACCAAGAAGTGCTTT 100 23
JHX98_RS02810  517286 ..  517307 -  -8.1  -5.36441   TGGTGACATAAAAAA           CTCCTTTTG TGCA CAAAAAGAG            TATCGCTTTCCAATC  90 266
        thiT  516660 ..  516683 -  -7.6  -5.88197   CTAAACATAAAAAAA          TGGTATAACA ACAT TATTATACCA           TTTTTTTAATGTAAG 100 58
JHX98_RS02800  516087 ..  516099 -  -2.7  -4.57787   ATAATACTAAACAAA                GACTA GCT TAATC                AAGGCGAAAACTTAA  60 72
JHX98_RS02795  514843 ..  514871 -  -3.2  -3.35679   TGTGGCTATTGATAA       CTTTGAACAGCTC TTTG GTGCCGTT-AAAG        TACTCTTTGATTTAC  48 337
        lysS  512407 ..  512432 - -14.9  -4.16842   GCTACTGTTAATAAA         CCAGTCTTCAT GGTA ATGAAGACTGG          TTAGAGATAATAAAA 100 98
JHX98_RS02780  511859 ..  511883 -  -6.6  -5.64274   TGAGTCATAAAAAAA          GTGAAAAAAA GATGA TTTTTTCCAC          TTTAATTTCGAATAG  89 371
JHX98_RS02760  508621 ..  508635 -    -5  -5.00616   CTTTCGTGCAAAAAA               CAAAAG AAA CCTTTG               CCGAAGTTGAAGCGA  77 303
JHX98_RS02720  502434 ..  502460 - -10.3  -2.91099   TAGATGATAAAAGAG        GAGGCTGAAACA CGAA TGTT-CAGCCTC         GACTGATACGTTTTG  79 116
JHX98_RS02715 NONE
JHX98_RS02710  500645 ..  500671 -  -6.7  -4.89729   GATAAAACTCAAAAA         GCATTTGTTTT GATAA AAAACAAGTGC         TTTTTTATTAGTCTT  83 40
JHX98_RS02690  494699 ..  494726 -   -15  -4.90906   TTATAACAGCAAAAA        CCAGTCTCGTTC AATA AAACGAGACTGG         TTTTTAGTATGTCAT 100 42
JHX98_RS02670  489842 ..  489874 -  -8.7  -5.14563   GTCTCTACTAAAAAA     TACTCCGTCTTCTA TGAAAC TAGAA-ACGGAGTA      TTTCTGTTTGTCTAT  95 234
JHX98_RS02600 NONE
JHX98_RS02595  481361 ..  481406 -  -6.4  -3.07005   AATCAATGGCTAATA GTGAGGA-GGATTT-GCCGATA GAGT TATCAGCTAAATCCATCCCCAT AATCACGTTTAACCC  59 103
JHX98_RS02585 NONE
JHX98_RS02580  479583 ..  479624 -  -9.6  -3.03151   TTTTTCAAAGTAAAG GCACTAAGTTGATCTGAC TTACAC ATCTTATCAACTTAGTGC  TTTTTTTATTTCTAG  77 37
        rgg3  468510 ..  468535 -   -12  -4.60949   TAGAGTACAAAGAAA         GCCTTGGAAA TAGCAG TTTCCAAGGC          TTTTTAGCTGTCGAT 100 130
        dhaS NONE
        dhaQ  452159 ..  452183 -  -4.2  -3.49135   TAGATAATGAAGGAA          GGCAGCTGTT GTAAA AATGGCTGCC          TTTTTTGTGATGGTT  53 40
JHX98_RS02410 NONE
JHX98_RS02405 NONE
JHX98_RS02400  441127 ..  441152 - -14.9  -5.42198   GGTTAAAAAATAAAA         CAACAGAAGCT TTAA AGCTTCTGTTG          TTAATAGTATTAGTT 100 35
JHX98_RS02395 NONE
JHX98_RS02390 NONE
JHX98_RS02385 NONE
         pcp  437522 ..  437542 -    -4   -5.9873   TTAGCACAAAAAAAA            CAGAGTTA GTTCA TATCTCTG            TTTTTTTTAAATAGG  93 57
        shp2 NONE
JHX98_RS02320  426947 ..  426958 -  -2.2  -4.18197   AGCTGGTAGTTAAAA                TAGC ATTA GCCA                 AGTGGTTGTACTGGC  54 338
        stcA  426566 ..  426590 - -15.1  -5.06451   GATTAGCTTAAAAAA          GAACACTACCG AAA CGGTAGTGTCC          ACTGATTTTAGGAGA 100 42
JHX98_RS02185  406925 ..  406967 -   -18  -3.02698   GTATTGCAGACAAAC TAAAAGAACCTGACGTCTCA TGA TGAGATGTCAGGTTCTTTTT TTGTGATGTCAGGCC 100 55
JHX98_RS02175  403453 ..  403465 -  -4.1  -3.79623   AAAAACCTTATCAAA                CCAAG GTA CTTAG                CCTATTATCTGATAA  57 59
JHX98_RS02155  399923 ..  399960 - -24.5  -5.40474   AGCCCCTCAAAAAAA   GAGGCCACACTCATTTA AATT TAAATGAGTGTGGCCTC    TTTTTGAGGAGACGC 100 47
JHX98_RS02105  391722 ..  391762 -   -12  -2.75064   CTTTGCACGCAATCA  GCAGCACAAAAAGCACCC CTGAC AGGTGCTTTTTGTGCTTT  AGCCAACCTCATAGC  84 52
JHX98_RS02090  389531 ..  389543 -  -4.8  -5.81032   GAACCTCAAAAAAAA                GGAC ATGGA GTCC                TTTTTTTGGTGATCG  91 53
         xth  373997 ..  374025 - -10.3  -5.07107   CAAAGTCTCAAAAAA        GGACAAGGCAACA TTA TAACGCCTTGTCC        TTTTTTGGGATCTGT 100 50
JHX98_RS02040  372654 ..  372680 -  -6.7  -5.50925   AACTAAGAGAAAAAA         GACCATCAA TTGGATTTG TTGATGGTC         TTTTAGGTGTTTAAA  87 36
JHX98_RS01985  362960 ..  362973 -  -6.7  -5.40625   ATAGCATAGAAAAAA               GGCTT AACA AAGCC                TTTTTTGATGTGATT  87 125
JHX98_RS01980  362053 ..  362066 -  -6.7  -3.12847   AATAAAGTTATTGAA               GCTGA TAAG TCAGC                ACTATAGGACAGTTG  59 4
JHX98_RS01975 NONE
JHX98_RS01970 NONE
JHX98_RS01965  359009 ..  359033 -  -7.9  -5.39721   GCACCATAGAAAAAA          GCTAGGAACAA GGA CTGTTCTTAGC          TTTTTGAGTGCTTTT  93 39
JHX98_RS01850  341833 ..  341849 -  -2.3  -3.85817   AGTTTTTTTCAGAAA              TTCACAA TAG TTCTGAA              GGCCGATTTTTAATT  50 35
        yidC  340407 ..  340430 -  -3.1  -5.17488   AATACCAAAAGAAAA          GACCAGCAC CTTAAT GTACTGACC           CCAAAAAGTTGGACA  71 449
        rsmG  322178 ..  322195 -  -5.6  -5.23016   AAATAAGTTAAAAAA             GCTAAG TTTCAT CTTAGC              CTTTGGTACTATTTT  82 39
JHX98_RS01760 NONE
JHX98_RS01755  320032 ..  320055 - -11.1  -5.64304   TAACATAATAAAAAA          CATCCTTGG AAAACG CCAAGGATG           TTTTTTTATTATTTA 100 34
        brnQ  317131 ..  317168 - -10.2  -4.57482   TTAGTCATAAATAAA  CGAAACAACACCCTAAGT TTTT ACTTAGGGTGTTGTT--G   TTTAGATGATGTCAT 100 27
JHX98_RS01640  298769 ..  298785 -  -3.7  -3.85817   ATTTTCCTTCAGAAA              CTGAAAT TTT ATTTCCG              GTTTGGCTTCAAGAA  55 17
JHX98_RS01635  298327 ..  298340 -  -3.1  -3.96148   TCTTTCTACTATAAA               CGTCT ATCA AGACA                GACACATAAAGTATT  55 133
JHX98_RS01625 NONE
JHX98_RS01620  297374 ..  297391 -  -3.5  -4.06055   ATGGTTGAAATCAAA             CCAAATCA CTT TG-TTTGG             GCAAACCAAGCAGAA  56 105
JHX98_RS01590  289363 ..  289386 -  -6.8  -5.24003   AATAAAAATGAAAAA          GACTG-CAGAA GTA CTCTGTCAGTC          AATGTCATACAAAAA  85 54
JHX98_RS01585  288023 ..  288060 - -17.4  -3.42884   ACACGTAAGATAACA   TATCAAAAACCTCTGT GCTTTG ACAGAGGTTTTTGATA    ATTCATTATTGGCGT 100 31
JHX98_RS01535 NONE
JHX98_RS01530  275083 ..  275111 -  -2.5  -5.15969   TTTGAATTGAAAAAA        GACCCAACT GGCATAGAAAT AGTTGGATC        CTTTATCTTATTTTA  69 33
JHX98_RS01525  274791 ..  274817 -  -3.8  -4.98522   AACTGTATACAAAAA         GGCTAAGA TGGAAGGGGTG TCTTAGCC         TTTTTTTGTCTGACT  70 69
JHX98_RS01450  257614 ..  257660 -  -7.4  -4.58663   ACGACCCTTTAAAAA GAAAACAACGCCCTTTTTGCTA TTG TAGTCTAAAGGTCGTTATTTTC TTTGTCAATAATAGT  82 8
JHX98_RS01330 NONE
        galU  231554 ..  231609 - -18.8  -2.98761   AGTAGGATGAAACGA CTCAAAAACCATAAAAATAAGGAGGGA TTT TCCCTCCTTATTTTTATGGTTTT-GTT TTCTCTAGTGCTTTG 100 13
JHX98_RS01315  228397 ..  228444 - -18.1  -4.43309   CAAGGTTAAGTAAAA GCGATAATAAAGTGCGCTTCCA GAACA TGGGAGCGCACTTTATTAT-GC CAAATTTCAGATAAG 100 212
JHX98_RS01300  224681 ..  224695 -  -2.9  -5.03405   AACAGGACATAAAAA               GTTTT AAATG AAAAC               AAACATTTTGACAAT  69 14
JHX98_RS01290  222569 ..  222595 -  -3.6  -4.72127   ATAGAATATACAAAA         GGGCGTTTCCAA GTA CTAGAAGCGCTC         TTTTTCAGACCCAAT  67 486
JHX98_RS01260  217625 ..  217652 -  -8.6  -3.61268   GAGTTAACCCTTAAA        TAAAGGCATTAT AAAT ATAGTGCCTTTA         CAAATCAAAAACCCC  77 86
JHX98_RS01180  197237 ..  197265 -  -2.4   -3.2672   ATCTGAATAAGAAAT        GTGGCGACCT AGGATTAGA AAACCGCCAC        GAGATGGTTTTTTAT  44 77
JHX98_RS01175  196883 ..  196910 -   -20  -4.88407   TTAGCCAATCAAAAA        GCCTAAGGCTGC ATAA GCAGCCTTAGGC         TTTTCATAACCGTAG 100 80
JHX98_RS01170  196270 ..  196300 - -12.8  -5.51046   CAAATACAGAAAAAA       GCTTGTCTATGA GATACCT TCATAGACAAGC       TTTGTTATAACTGTT 100 47
JHX98_RS01135 NONE
JHX98_RS01130  186191 ..  186228 -  -6.5   -5.2189   TTAAGTAGTAAAAAA  GCAAGCCATCAA--AGG GATTAA CCTAACTGATGGCTTGC   TTTTTAAGTAGCGTG  85 57
JHX98_RS01070  174148 ..  174161 -  -2.3  -4.45577   AGAAATTGCAGAAAA               TGGAG ATAT CGCCA                ATTACCTGATTCCAG  59 440
JHX98_RS01050  170866 ..  170890 -  -2.9  -3.90574   AATAACTACATGAAA         CGCCTG--GGA TTGTT TCCTTCAGGCG         TTTTTTTTAAGGTCT  53 52
JHX98_RS01040  168353 ..  168382 - -10.2  -5.24416   CAAGTATAATAAAAA       GAGTCTGAG-CAA TCATG TTGTCTCAGACTC       TGACTGTAATTATGC 100 67
JHX98_RS01030  163587 ..  163601 -  -2.1  -3.66356   ACTTTTAAGCCCAAA               CGGTT AGTAA AACCA               ATACCGCCTAGACAA  49 326
JHX98_RS01000 NONE
        hslO NONE
        dusB NONE
JHX98_RS00985  154378 ..  154390 -  -6.3  -3.31461   GATTTAGTCTTAGAA                GAAGA TAC TCTTC                CCTTTTGATAGGGGA  61 293
        pepA NONE
JHX98_RS00955 NONE
JHX98_RS00880  131464 ..  131488 - -10.1  -5.29445   TTTTAATAAGAAAAA          TCCTCACATGT TTA ATATGTGAGGA          TTTATTTATAAATGC 100 464
JHX98_RS00540   85428 ..   85448 -  -6.2  -5.84381   GCATTAATAAAAAAA            TGTGGTCT AATTA AAACCACA            TTTTTTTATTAAAAG  93 55
JHX98_RS00490   72588 ..   72610 -  -9.1  -4.07772   GAAATAAAAAACCAA           CCGCTCAGA TTATT TCTGGGCGG           TTTTTTTGTGTCTAA  85 56
JHX98_RS00270 NONE
JHX98_RS00265 NONE
JHX98_RS00260 NONE
JHX98_RS00255   34245 ..   34260 -  -3.2  -2.94365   TCACACCTTAGAAAT              CCCTTG AAAT CAATGG               GTTTCTAAATCCAAA  44 75
