NX99_RS00005	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00025	SM01208	NX99_RS00025
NX99_RS00070	SM00957	SecA DEAD-like domain
NX99_RS00070	SM00958	SecA preprotein cross-linking domain
NX99_RS00135	SM01266	NX99_RS00135
NX99_RS00140	SM00347	helix_turn_helix multiple antibiotic resistance protein
NX99_RS00250	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NX99_RS00300	SM01120	NX99_RS00300
NX99_RS00335	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00345	SM00448	cheY-homologous receiver domain
NX99_RS00345	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS00350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NX99_RS00350	SM00388	His Kinase A (phosphoacceptor) domain
NX99_RS00355	SM00642	Alpha-amylase domain
NX99_RS00360	SM00342	helix_turn_helix, arabinose operon control protein
NX99_RS00385	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00395	SM00642	Alpha-amylase domain
NX99_RS00400	SM00642	Alpha-amylase domain
NX99_RS00405	SM00354	helix_turn _helix lactose operon repressor
NX99_RS00435	SM01038	Beta galactosidase small chain
NX99_RS00470	SM00448	cheY-homologous receiver domain
NX99_RS00470	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS00475	SM00388	His Kinase A (phosphoacceptor) domain
NX99_RS00495	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00535	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00560	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS00575	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00670	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS00690	SM00448	cheY-homologous receiver domain
NX99_RS00690	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS00695	SM00387	Histidine kinase-like ATPases
NX99_RS00700	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00725	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00755	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00770	SM00421	helix_turn_helix, Lux Regulon
NX99_RS00770	SM00448	cheY-homologous receiver domain
NX99_RS00815	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00820	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS00835	SM00635	Bacterial Ig-like domain 2
NX99_RS00835	SM00640	Glycosyl hydrolases family 32
NX99_RS00855	SM00465	GIY-YIG type nucleases (URI domain)
NX99_RS00860	SM00155	Phospholipase D. Active site motifs.
NX99_RS00870	SM00155	Phospholipase D. Active site motifs.
NX99_RS00880	SM00859	Semialdehyde dehydrogenase, NAD binding domain
NX99_RS00885	SM01130	NX99_RS00885
NX99_RS00890	SM00358	Double-stranded RNA binding motif
NX99_RS00890	SM00535	Ribonuclease III family
NX99_RS00895	SM00968	SMC proteins Flexible Hinge Domain
NX99_RS00905	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS00925	SM00873	B3/4 domain
NX99_RS00925	SM00874	tRNA synthetase B5 domain
NX99_RS00925	SM00896	Ferredoxin-fold anticodon binding domain
NX99_RS00940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NX99_RS00965	SM00382	ATPases associated with a variety of cellular activities
NX99_RS00980	SM00434	DNA Topoisomerase IV
NX99_RS01035	SM00937	NX99_RS01035
NX99_RS01065	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01070	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01150	SM00448	cheY-homologous receiver domain
NX99_RS01150	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS01155	SM00387	Histidine kinase-like ATPases
NX99_RS01155	SM00388	His Kinase A (phosphoacceptor) domain
NX99_RS01175	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
NX99_RS01180	SM01133	NX99_RS01180
NX99_RS01195	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01210	SM00849	Metallo-beta-lactamase superfamily
NX99_RS01215	SM00479	NX99_RS01215
NX99_RS01215	SM00487	DEAD-like helicases superfamily
NX99_RS01215	SM00491	NX99_RS01215
NX99_RS01320	SM00047	Lysozyme subfamily 2
NX99_RS01345	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01350	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS01370	SM00829	Enoylreductase
NX99_RS01380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NX99_RS01380	SM00866	NX99_RS01380
NX99_RS01390	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01390	SM00962	SRP54-type protein, GTPase domain
NX99_RS01390	SM00963	SRP54-type protein, helical bundle domain
NX99_RS01405	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS01430	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
NX99_RS01430	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
NX99_RS01430	SM00493	NX99_RS01430
NX99_RS01435	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01450	SM00448	cheY-homologous receiver domain
NX99_RS01450	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS01470	SM00562	NX99_RS01470
NX99_RS01475	SM00450	Rhodanese Homology Domain
NX99_RS01485	SM00838	Elongation factor G C-terminus
NX99_RS01525	SM00347	helix_turn_helix multiple antibiotic resistance protein
NX99_RS01535	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01545	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NX99_RS01545	SM00478	endonuclease III
NX99_RS01565	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01590	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01595	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01635	SM00829	Enoylreductase
NX99_RS01665	SM00487	DEAD-like helicases superfamily
NX99_RS01715	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
NX99_RS01730	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS01745	SM00342	helix_turn_helix, arabinose operon control protein
NX99_RS01800	SM00904	Riboflavin kinase
NX99_RS01840	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01845	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01885	SM00354	helix_turn _helix lactose operon repressor
NX99_RS01905	SM00382	ATPases associated with a variety of cellular activities
NX99_RS01940	SM00642	Alpha-amylase domain
NX99_RS01965	SM00861	Transketolase, pyrimidine binding domain
NX99_RS01995	SM00986	Uracil DNA glycosylase superfamily
NX99_RS01995	SM00987	UreE urease accessory protein, C-terminal domain 
NX99_RS02050	SM00855	Phosphoglycerate mutase family
NX99_RS02055	SM00855	Phosphoglycerate mutase family
NX99_RS02060	SM00855	Phosphoglycerate mutase family
NX99_RS02210	SM00986	Uracil DNA glycosylase superfamily
NX99_RS02210	SM00987	UreE urease accessory protein, C-terminal domain 
NX99_RS02255	SM00257	Lysin motif
NX99_RS02275	SM00047	Lysozyme subfamily 2
NX99_RS02275	SM00646	NX99_RS02275
NX99_RS02285	SM00028	Tetratricopeptide repeats
NX99_RS02305	SM00382	ATPases associated with a variety of cellular activities
NX99_RS02310	SM00937	NX99_RS02310
NX99_RS02330	SM00831	Cation transporter/ATPase, N-terminus
NX99_RS02360	SM00849	Metallo-beta-lactamase superfamily
NX99_RS02365	SM00091	PAS domain
NX99_RS02365	SM00387	Histidine kinase-like ATPases
NX99_RS02365	SM00388	His Kinase A (phosphoacceptor) domain
NX99_RS02370	SM00448	cheY-homologous receiver domain
NX99_RS02370	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS02375	SM00382	ATPases associated with a variety of cellular activities
NX99_RS02380	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS02395	SM00382	ATPases associated with a variety of cellular activities
NX99_RS02400	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS02415	SM00892	DNA/RNA non-specific endonuclease
NX99_RS02500	SM00382	ATPases associated with a variety of cellular activities
NX99_RS02540	SM00830	Chorismate mutase type II
NX99_RS02570	SM00849	Metallo-beta-lactamase superfamily
NX99_RS02575	SM00382	ATPases associated with a variety of cellular activities
NX99_RS02620	SM00481	DNA polymerase alpha chain like domain
NX99_RS02640	SM01329	NX99_RS02640
NX99_RS02645	SM00917	LeuA allosteric (dimerisation) domain
NX99_RS02650	SM00855	Phosphoglycerate mutase family
NX99_RS02665	SM00411	bacterial (prokaryotic) histone like domain
NX99_RS02695	SM00363	S4 RNA-binding domain
NX99_RS02720	SM00478	endonuclease III
NX99_RS02720	SM00525	NX99_RS02720
NX99_RS02785	SM00642	Alpha-amylase domain
NX99_RS02900	SM00729	Elongator protein 3, MiaB family, Radical SAM
NX99_RS03000	SM00382	ATPases associated with a variety of cellular activities
NX99_RS03010	SM00487	DEAD-like helicases superfamily
NX99_RS03010	SM00490	helicase superfamily c-terminal domain
NX99_RS03045	SM01329	NX99_RS03045
NX99_RS03085	SM00363	S4 RNA-binding domain
NX99_RS03105	SM00864	Tubulin/FtsZ family, GTPase domain
NX99_RS03105	SM00865	Tubulin/FtsZ family, C-terminal domain
NX99_RS03110	SM00842	Cell division protein FtsA
NX99_RS03135	SM00838	Elongation factor G C-terminus
NX99_RS03195	SM00382	ATPases associated with a variety of cellular activities
NX99_RS03210	SM00529	Helix-turn-helix diphteria tox regulatory element
NX99_RS03225	SM00710	Parallel beta-helix repeats
NX99_RS03265	SM00487	DEAD-like helicases superfamily
NX99_RS03305	SM00855	Phosphoglycerate mutase family
NX99_RS03325	SM00257	Lysin motif
NX99_RS03410	SM00731	SprT homologues.
NX99_RS03415	SM00316	Ribosomal protein S1-like RNA-binding domain
NX99_RS03415	SM00732	Likely ribonuclease with RNase H fold.
NX99_RS03505	SM00861	Transketolase, pyrimidine binding domain
NX99_RS03535	SM00046	Diacylglycerol kinase catalytic domain (presumed)
NX99_RS03550	SM00382	ATPases associated with a variety of cellular activities
NX99_RS03805	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS03820	SM01192	NX99_RS03820
NX99_RS03820	SM01193	NX99_RS03820
NX99_RS03840	SM00354	helix_turn _helix lactose operon repressor
NX99_RS03850	SM00316	Ribosomal protein S1-like RNA-binding domain
NX99_RS03865	SM00316	Ribosomal protein S1-like RNA-binding domain
NX99_RS03865	SM00955	NX99_RS03865
NX99_RS03890	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
NX99_RS03890	SM01232	NX99_RS03890
NX99_RS03910	SM01061	CAT RNA binding domain
NX99_RS03915	SM00493	NX99_RS03915
NX99_RS03950	SM00899	NX99_RS03950
NX99_RS03955	SM00382	ATPases associated with a variety of cellular activities
NX99_RS03975	SM00382	ATPases associated with a variety of cellular activities
NX99_RS03975	SM01086	C-terminal, D2-small domain, of ClpB protein
NX99_RS04020	SM00316	Ribosomal protein S1-like RNA-binding domain
NX99_RS04045	SM00434	DNA Topoisomerase IV
NX99_RS04070	SM00387	Histidine kinase-like ATPases
NX99_RS04070	SM00433	TopoisomeraseII
NX99_RS04075	SM01207	NX99_RS04075
NX99_RS04105	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04105	SM00994	ClpX C4-type zinc finger
NX99_RS04105	SM01086	C-terminal, D2-small domain, of ClpB protein
NX99_RS04155	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NX99_RS04200	SM00831	Cation transporter/ATPase, N-terminus
NX99_RS04240	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
NX99_RS04240	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
NX99_RS04255	SM00363	S4 RNA-binding domain
NX99_RS04275	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS04280	SM00450	Rhodanese Homology Domain
NX99_RS04295	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04300	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04335	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04350	SM00851	MGS-like domain
NX99_RS04350	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
NX99_RS04350	SM01209	NX99_RS04350
NX99_RS04355	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
NX99_RS04380	SM00363	S4 RNA-binding domain
NX99_RS04405	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS04515	SM00047	Lysozyme subfamily 2
NX99_RS04520	SM00938	Nitrogen regulatory protein P-II
NX99_RS04560	SM00861	Transketolase, pyrimidine binding domain
NX99_RS04585	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04635	SM00507	HNH nucleases
NX99_RS04700	SM00859	Semialdehyde dehydrogenase, NAD binding domain
NX99_RS04715	SM00287	Bacterial SH3 domain homologues
NX99_RS04730	SM00448	cheY-homologous receiver domain
NX99_RS04730	SM00850	LytTr DNA-binding domain
NX99_RS04735	SM00287	Bacterial SH3 domain homologues
NX99_RS04750	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS04755	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NX99_RS04835	SM00257	Lysin motif
NX99_RS04860	SM00387	Histidine kinase-like ATPases
NX99_RS04860	SM00388	His Kinase A (phosphoacceptor) domain
NX99_RS04865	SM00448	cheY-homologous receiver domain
NX99_RS04865	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS04870	SM00954	Region found in RelA / SpoT proteins
NX99_RS04880	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04885	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04890	SM00347	helix_turn_helix multiple antibiotic resistance protein
NX99_RS04905	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
NX99_RS04925	SM00382	ATPases associated with a variety of cellular activities
NX99_RS04980	SM00981	NX99_RS04980
NX99_RS05015	SM00420	helix_turn_helix, Deoxyribose operon repressor
NX99_RS05015	SM01134	NX99_RS05015
NX99_RS05020	SM00322	K homology RNA-binding domain
NX99_RS05020	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NX99_RS05040	SM00878	Biotin carboxylase C-terminal domain
NX99_RS05055	SM00825	Beta-ketoacyl synthase
NX99_RS05060	SM00822	NX99_RS05060
NX99_RS05065	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NX99_RS05085	SM00347	helix_turn_helix multiple antibiotic resistance protein
NX99_RS05130	SM01131	NX99_RS05130
NX99_RS05195	SM00487	DEAD-like helicases superfamily
NX99_RS05195	SM00490	helicase superfamily c-terminal domain
NX99_RS05210	SM00116	Domain in cystathionine beta-synthase and other proteins.
NX99_RS05215	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05220	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05265	SM00640	Glycosyl hydrolases family 32
NX99_RS05280	SM00831	Cation transporter/ATPase, N-terminus
NX99_RS05320	SM00316	Ribosomal protein S1-like RNA-binding domain
NX99_RS05320	SM00322	K homology RNA-binding domain
NX99_RS05430	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NX99_RS05430	SM00387	Histidine kinase-like ATPases
NX99_RS05430	SM00388	His Kinase A (phosphoacceptor) domain
NX99_RS05435	SM00448	cheY-homologous receiver domain
NX99_RS05435	SM00862	Transcriptional regulatory protein, C terminal
NX99_RS05490	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05490	SM00930	NX99_RS05490
NX99_RS05505	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS05520	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05530	SM00014	Acid phosphatase homologues
NX99_RS05555	SM01234	NX99_RS05555
NX99_RS05560	SM00363	S4 RNA-binding domain
NX99_RS05580	SM00116	Domain in cystathionine beta-synthase and other proteins.
NX99_RS05630	SM00967	RNA 2'-O ribose methyltransferase substrate binding
NX99_RS05670	SM00487	DEAD-like helicases superfamily
NX99_RS05670	SM00490	helicase superfamily c-terminal domain
NX99_RS05680	SM00981	NX99_RS05680
NX99_RS05735	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05740	SM00422	helix_turn_helix, mercury resistance
NX99_RS05750	SM00850	LytTr DNA-binding domain
NX99_RS05760	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05775	SM00347	helix_turn_helix multiple antibiotic resistance protein
NX99_RS05795	SM00014	Acid phosphatase homologues
NX99_RS05800	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
NX99_RS05800	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
NX99_RS05845	SM00883	Chaperonin 10 Kd subunit
NX99_RS05850	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05880	SM01323	NX99_RS05880
NX99_RS05890	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05895	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS05925	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05930	SM00347	helix_turn_helix multiple antibiotic resistance protein
NX99_RS05970	SM00382	ATPases associated with a variety of cellular activities
NX99_RS05995	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS06000	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06015	SM01387	NX99_RS06015
NX99_RS06030	SM00100	Cyclic nucleotide-monophosphate binding domain
NX99_RS06055	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NX99_RS06055	SM00954	Region found in RelA / SpoT proteins
NX99_RS06155	SM00271	DnaJ molecular chaperone homology domain
NX99_RS06175	SM00047	Lysozyme subfamily 2
NX99_RS06185	SM00855	Phosphoglycerate mutase family
NX99_RS06200	SM00854	Bacterial capsule synthesis protein PGA_cap
NX99_RS06215	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS06245	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NX99_RS06290	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS06310	SM00967	RNA 2'-O ribose methyltransferase substrate binding
NX99_RS06320	SM00535	Ribonuclease III family
NX99_RS06325	SM00840	NX99_RS06325
NX99_RS06340	SM00316	Ribosomal protein S1-like RNA-binding domain
NX99_RS06340	SM00322	K homology RNA-binding domain
NX99_RS06345	SM00936	Penicillin-binding protein 5, C-terminal domain 
NX99_RS06350	SM00936	Penicillin-binding protein 5, C-terminal domain 
NX99_RS06355	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06355	SM01086	C-terminal, D2-small domain, of ClpB protein
NX99_RS06400	SM00347	helix_turn_helix multiple antibiotic resistance protein
NX99_RS06415	SM00479	NX99_RS06415
NX99_RS06415	SM00481	DNA polymerase alpha chain like domain
NX99_RS06505	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06510	SM00852	Probable molybdopterin binding domain
NX99_RS06520	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NX99_RS06530	SM00853	MutL C terminal dimerisation domain
NX99_RS06530	SM01340	NX99_RS06530
NX99_RS06540	SM00850	LytTr DNA-binding domain
NX99_RS06550	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
NX99_RS06550	SM00534	ATPase domain of DNA mismatch repair MUTS family
NX99_RS06565	SM00836	DALR anticodon binding domain
NX99_RS06565	SM01016	Arginyl tRNA synthetase N terminal dom
NX99_RS06570	SM00998	Adenylosuccinate lyase C-terminus
NX99_RS06580	SM00998	Adenylosuccinate lyase C-terminus
NX99_RS06610	SM01001	AIR carboxylase
NX99_RS06615	SM01209	NX99_RS06615
NX99_RS06615	SM01210	NX99_RS06615
NX99_RS06625	SM00798	AICARFT/IMPCHase bienzyme
NX99_RS06625	SM00851	MGS-like domain
NX99_RS06645	SM01211	NX99_RS06645
NX99_RS06675	SM01400	NX99_RS06675
NX99_RS06805	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06815	SM00977	TilS substrate C-terminal domain
NX99_RS06835	SM00363	S4 RNA-binding domain
NX99_RS06840	SM00487	DEAD-like helicases superfamily
NX99_RS06840	SM00490	helicase superfamily c-terminal domain
NX99_RS06840	SM00982	NX99_RS06840
NX99_RS06840	SM01058	CarD-like/TRCF domain
NX99_RS06860	SM00480	DNA polymerase III beta subunit
NX99_RS06865	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06865	SM00760	Bacterial dnaA protein helix-turn-helix domain
NX99_RS06870	SM00470	ParB-like nuclease domain
NX99_RS06875	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NX99_RS06910	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06925	SM00116	Domain in cystathionine beta-synthase and other proteins.
NX99_RS06925	SM01240	NX99_RS06925
NX99_RS06965	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06970	SM00382	ATPases associated with a variety of cellular activities
NX99_RS06980	SM00257	Lysin motif
NX99_RS07005	SM01228	NX99_RS07005
NX99_RS07030	SM00363	S4 RNA-binding domain
NX99_RS07030	SM01390	NX99_RS07030
NX99_RS07110	SM00267	diguanylate cyclase
NX99_RS07205	SM00732	Likely ribonuclease with RNase H fold.
NX99_RS07220	SM00382	ATPases associated with a variety of cellular activities
NX99_RS07250	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS07270	SM00788	Adenylosuccinate synthetase
NX99_RS07275	SM00226	Low molecular weight phosphatase family
NX99_RS07280	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
NX99_RS07290	SM00382	ATPases associated with a variety of cellular activities
NX99_RS07295	SM01403	NX99_RS07295
NX99_RS07315	SM01382	NX99_RS07315
NX99_RS07315	SM01383	NX99_RS07315
NX99_RS07330	SM00322	K homology RNA-binding domain
NX99_RS07350	SM01374	NX99_RS07350
NX99_RS07355	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
NX99_RS07410	SM00316	Ribosomal protein S1-like RNA-binding domain
NX99_RS07430	SM00662	RNA polymerases D
NX99_RS07470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NX99_RS07470	SM00866	NX99_RS07470
NX99_RS07480	SM00642	Alpha-amylase domain
NX99_RS07520	SM01120	NX99_RS07520
NX99_RS07520	SM01121	NX99_RS07520
NX99_RS07545	SM00363	S4 RNA-binding domain
NX99_RS07560	SM00663	RNA polymerase I subunit A N-terminus
NX99_RS07615	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS07770	SM00382	ATPases associated with a variety of cellular activities
NX99_RS07780	SM00947	Carbonic anhydrase
NX99_RS07790	SM00649	Ribosomal protein L11/L12
NX99_RS07830	SM00448	cheY-homologous receiver domain
NX99_RS07830	SM00850	LytTr DNA-binding domain
NX99_RS07855	SM00393	Putative single-stranded nucleic acids-binding domain
NX99_RS07855	SM01245	NX99_RS07855
NX99_RS07980	SM01321	NX99_RS07980
NX99_RS07985	SM00506	Appr-1"-p processing enzyme
NX99_RS07995	SM00881	CoA binding domain
NX99_RS08005	SM00493	NX99_RS08005
NX99_RS08010	SM00650	Ribosomal RNA adenine dimethylases
NX99_RS08030	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
NX99_RS08060	SM00838	Elongation factor G C-terminus
NX99_RS08060	SM00889	Elongation factor G, domain IV
NX99_RS08065	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
NX99_RS08085	SM00422	helix_turn_helix, mercury resistance
NX99_RS08090	SM01230	NX99_RS08090
NX99_RS08095	SM00257	Lysin motif
NX99_RS08100	SM00849	Metallo-beta-lactamase superfamily
NX99_RS08135	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08160	SM00463	Small MutS-related domain
NX99_RS08160	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
NX99_RS08160	SM00534	ATPase domain of DNA mismatch repair MUTS family
NX99_RS08165	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
NX99_RS08165	SM00474	3'-5' exonuclease
NX99_RS08165	SM00475	5'-3' exonuclease
NX99_RS08165	SM00482	DNA polymerase A domain
NX99_RS08180	SM00478	endonuclease III
NX99_RS08250	SM00841	Elongation factor P, C-terminal
NX99_RS08250	SM01185	NX99_RS08250
NX99_RS08265	SM00354	helix_turn _helix lactose operon repressor
NX99_RS08270	SM00640	Glycosyl hydrolases family 32
NX99_RS08295	SM00957	SecA DEAD-like domain
NX99_RS08295	SM00958	SecA preprotein cross-linking domain
NX99_RS08315	SM01005	Alanine racemase, C-terminal domain
NX99_RS08320	SM00487	DEAD-like helicases superfamily
NX99_RS08320	SM00490	helicase superfamily c-terminal domain
NX99_RS08340	SM00530	Helix-turn-helix XRE-family like proteins 
NX99_RS08345	SM00870	NX99_RS08345
NX99_RS08365	SM00850	LytTr DNA-binding domain
NX99_RS08385	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08430	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08490	SM00740	NX99_RS08490
NX99_RS08500	SM00487	DEAD-like helicases superfamily
NX99_RS08500	SM00490	helicase superfamily c-terminal domain
NX99_RS08530	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08535	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08565	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
NX99_RS08565	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
NX99_RS08605	SM01057	Eukaryotic-type carbonic anhydrase
NX99_RS08625	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS08635	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08665	SM00729	Elongator protein 3, MiaB family, Radical SAM
NX99_RS08695	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08700	SM01091	Transporter associated domain
NX99_RS08775	SM00845	GatB domain
NX99_RS08800	SM01103	NX99_RS08800
NX99_RS08810	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NX99_RS08840	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08840	SM01086	C-terminal, D2-small domain, of ClpB protein
NX99_RS08865	SM00382	ATPases associated with a variety of cellular activities
NX99_RS08915	SM00479	NX99_RS08915
NX99_RS08920	SM00422	helix_turn_helix, mercury resistance
NX99_RS08930	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09035	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09040	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS09040	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NX99_RS09090	SM00487	DEAD-like helicases superfamily
NX99_RS09090	SM00490	helicase superfamily c-terminal domain
NX99_RS09110	SM00563	Phosphate acyltransferases
NX99_RS09115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NX99_RS09120	SM00849	Metallo-beta-lactamase superfamily
NX99_RS09135	SM00116	Domain in cystathionine beta-synthase and other proteins.
NX99_RS09155	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NX99_RS09155	SM00292	breast cancer carboxy-terminal domain
NX99_RS09155	SM00532	Ligase N family
NX99_RS09160	SM00046	Diacylglycerol kinase catalytic domain (presumed)
NX99_RS09210	SM00235	Zinc-dependent metalloprotease
NX99_RS09215	SM00850	LytTr DNA-binding domain
NX99_RS09260	SM00642	Alpha-amylase domain
NX99_RS09265	SM00905	Dihydroneopterin aldolase
NX99_RS09280	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09300	SM00244	prohibitin homologues
NX99_RS09355	SM00387	Histidine kinase-like ATPases
NX99_RS09355	SM00433	TopoisomeraseII
NX99_RS09400	SM00363	S4 RNA-binding domain
NX99_RS09420	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09425	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS09425	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NX99_RS09440	SM00487	DEAD-like helicases superfamily
NX99_RS09440	SM00490	helicase superfamily c-terminal domain
NX99_RS09450	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS09450	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NX99_RS09455	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS09455	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NX99_RS09465	SM00062	Bacterial periplasmic substrate-binding proteins
NX99_RS09465	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NX99_RS09480	SM00400	zinc finger
NX99_RS09480	SM00493	NX99_RS09480
NX99_RS09575	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09595	SM00881	CoA binding domain
NX99_RS09610	SM01400	NX99_RS09610
NX99_RS09615	SM01118	NX99_RS09615
NX99_RS09620	SM00954	Region found in RelA / SpoT proteins
NX99_RS09660	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09665	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09675	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NX99_RS09695	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09695	SM00962	SRP54-type protein, GTPase domain
NX99_RS09695	SM00963	SRP54-type protein, helical bundle domain
NX99_RS09700	SM00072	Guanylate kinase homologues.
NX99_RS09705	SM01409	NX99_RS09705
NX99_RS09710	SM00487	DEAD-like helicases superfamily
NX99_RS09710	SM00490	helicase superfamily c-terminal domain
NX99_RS09725	SM00331	Sigma factor PP2C-like phosphatases
NX99_RS09725	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
NX99_RS09730	SM00220	Serine/Threonine protein kinases, catalytic domain
NX99_RS09730	SM00740	NX99_RS09730
NX99_RS09745	SM00387	Histidine kinase-like ATPases
NX99_RS09750	SM00421	helix_turn_helix, Lux Regulon
NX99_RS09750	SM00448	cheY-homologous receiver domain
NX99_RS09780	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09780	SM00843	NX99_RS09780
NX99_RS09785	SM00642	Alpha-amylase domain
NX99_RS09790	SM00642	Alpha-amylase domain
NX99_RS09835	SM00382	ATPases associated with a variety of cellular activities
NX99_RS09840	SM00382	ATPases associated with a variety of cellular activities
