locus-tag class description SSA_0001 PF00308 Bacterial dnaA protein SSA_0001 PF08299 Bacterial dnaA protein helix-turn-helix SSA_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain SSA_0002 PF02767 DNA polymerase III beta subunit, central domain SSA_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain SSA_0005 PF01926 50S ribosome-binding GTPase SSA_0005 PF06071 Protein of unknown function (DUF933) SSA_0006 PF01195 Peptidyl-tRNA hydrolase SSA_0008 PF17757 UvrB interaction domain SSA_0008 PF03461 TRCF domain SSA_0008 PF02559 CarD-like/TRCF domain SSA_0008 PF00270 DEAD/DEAH box helicase SSA_0008 PF00271 Helicase conserved C-terminal domain SSA_0009 PF01479 S4 domain SSA_0013 PF11734 TilS substrate C-terminal domain SSA_0013 PF01171 PP-loop family SSA_0014 PF00156 Phosphoribosyl transferase domain SSA_0015 PF00004 ATPase family associated with various cellular activities (AAA) SSA_0015 PF01434 Peptidase family M41 SSA_0015 PF06480 FtsH Extracellular SSA_0015 PF17862 AAA+ lid domain SSA_0017 PF04085 rod shape-determining protein MreC SSA_0019 PF05257 CHAP domain SSA_0019 PF01476 LysM domain SSA_0020 PF14572 Phosphoribosyl synthetase-associated domain SSA_0020 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SSA_0022 PF04203 Sortase domain SSA_0023 PF00155 Aminotransferase class I and II SSA_0025 PF02565 Recombination protein O C terminal SSA_0025 PF11967 Recombination protein O N terminal SSA_0026 PF02504 Fatty acid synthesis protein SSA_0027 PF00550 Phosphopantetheine attachment site SSA_0028 PF01259 SAICAR synthetase SSA_0030 PF00586 AIR synthase related protein, N-terminal domain SSA_0030 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SSA_0030 PF02769 AIR synthase related protein, C-terminal domain SSA_0031 PF00156 Phosphoribosyl transferase domain SSA_0031 PF13537 Glutamine amidotransferase domain SSA_0032 PF00586 AIR synthase related protein, N-terminal domain SSA_0032 PF02769 AIR synthase related protein, C-terminal domain SSA_0033 PF00551 Formyl transferase SSA_0035 PF01808 AICARFT/IMPCHase bienzyme SSA_0035 PF02142 MGS-like domain SSA_0036 PF01476 LysM domain SSA_0036 PF05257 CHAP domain SSA_0037 PF02844 Phosphoribosylglycinamide synthetase, N domain SSA_0037 PF02843 Phosphoribosylglycinamide synthetase, C domain SSA_0037 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SSA_0039 PF00731 AIR carboxylase SSA_0040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SSA_0040 PF02222 ATP-grasp domain SSA_0040 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SSA_0042 PF01177 Asp/Glu/Hydantoin racemase SSA_0046 PF10397 Adenylosuccinate lyase C-terminus SSA_0046 PF00206 Lyase SSA_0047 PF02525 Flavodoxin-like fold SSA_0049 PF02733 Dak1 domain SSA_0050 PF02734 DAK2 domain SSA_0051 PF03610 PTS system fructose IIA component SSA_0052 PF07702 UTRA domain SSA_0052 PF00392 Bacterial regulatory proteins, gntR family SSA_0053 PF01301 Glycosyl hydrolases family 35 SSA_0054 PF03830 PTS system sorbose subfamily IIB component SSA_0055 PF03609 PTS system sorbose-specific iic component SSA_0056 PF03613 PTS system mannose/fructose/sorbose family IID component SSA_0060 PF01380 SIS domain SSA_0061 PF01791 DeoC/LacD family aldolase SSA_0062 PF01263 Aldose 1-epimerase SSA_0063 PF05496 Holliday junction DNA helicase RuvB P-loop domain SSA_0063 PF05491 RuvB C-terminal winged helix domain SSA_0063 PF17864 RuvB AAA lid domain SSA_0065 PF01451 Low molecular weight phosphotyrosine protein phosphatase SSA_0067 PF01757 Acyltransferase family SSA_0068 PF00465 Iron-containing alcohol dehydrogenase SSA_0068 PF00171 Aldehyde dehydrogenase family SSA_0070 PF05448 Acetyl xylan esterase (AXE1) SSA_0071 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SSA_0072 PF00005 ABC transporter SSA_0072 PF17912 MalK OB fold domain SSA_0072 PF03459 TOBE domain SSA_0073 PF04074 YhcH/YjgK/YiaL SSA_0075 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0076 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0077 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SSA_0077 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SSA_0078 PF00701 Dihydrodipicolinate synthetase family SSA_0079 PF00480 ROK family SSA_0085 PF01496 V-type ATPase 116kDa subunit family SSA_0086 PF00137 ATP synthase subunit C SSA_0088 PF01992 ATP synthase (C/AC39) subunit SSA_0089 PF01990 ATP synthase (F/14-kDa) subunit SSA_0091 PF16886 ATPsynthase alpha/beta subunit N-term extension SSA_0091 PF02874 ATP synthase alpha/beta family, beta-barrel domain SSA_0091 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SSA_0092 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SSA_0092 PF02874 ATP synthase alpha/beta family, beta-barrel domain SSA_0093 PF01813 ATP synthase subunit D SSA_0095 PF00291 Pyridoxal-phosphate dependent enzyme SSA_0095 PF14821 Threonine synthase N terminus SSA_0097 PF01554 MatE SSA_0098 PF13419 Haloacid dehalogenase-like hydrolase SSA_0100 PF00476 DNA polymerase family A SSA_0100 PF01367 5'-3' exonuclease, C-terminal SAM fold SSA_0100 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SSA_0101 PF13380 CoA binding domain SSA_0104 PF01702 Queuine tRNA-ribosyltransferase SSA_0106 PF00338 Ribosomal protein S10p/S20e SSA_0107 PF00297 Ribosomal protein L3 SSA_0108 PF00573 Ribosomal protein L4/L1 family SSA_0109 PF00276 Ribosomal protein L23 SSA_0110 PF03947 Ribosomal Proteins L2, C-terminal domain SSA_0110 PF00181 Ribosomal Proteins L2, RNA binding domain SSA_0111 PF00203 Ribosomal protein S19 SSA_0112 PF00237 Ribosomal protein L22p/L17e SSA_0113 PF07650 KH domain SSA_0113 PF00189 Ribosomal protein S3, C-terminal domain SSA_0114 PF00252 Ribosomal protein L16p/L10e SSA_0115 PF00831 Ribosomal L29 protein SSA_0116 PF00366 Ribosomal protein S17 SSA_0117 PF00238 Ribosomal protein L14p/L23e SSA_0118 PF00467 KOW motif SSA_0118 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SSA_0119 PF00673 ribosomal L5P family C-terminus SSA_0119 PF00281 Ribosomal protein L5 SSA_0120 PF00410 Ribosomal protein S8 SSA_0122 PF00347 Ribosomal protein L6 SSA_0123 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SSA_0124 PF00333 Ribosomal protein S5, N-terminal domain SSA_0124 PF03719 Ribosomal protein S5, C-terminal domain SSA_0125 PF00327 Ribosomal protein L30p/L7e SSA_0126 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SSA_0127 PF00344 SecY translocase SSA_0129 PF01176 Translation initiation factor 1A / IF-1 SSA_0130 PF00416 Ribosomal protein S13/S18 SSA_0131 PF00411 Ribosomal protein S11 SSA_0132 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SSA_0132 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SSA_0132 PF01000 RNA polymerase Rpb3/RpoA insert domain SSA_0133 PF01196 Ribosomal protein L17 SSA_0134 PF00912 Transglycosylase SSA_0134 PF00905 Penicillin binding protein transpeptidase domain SSA_0135 PF01047 MarR family SSA_0136 PF00005 ABC transporter SSA_0137 PF00950 ABC 3 transport family SSA_0138 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SSA_0138 PF01297 Zinc-uptake complex component A periplasmic SSA_0139 PF03965 Penicillinase repressor SSA_0140 PF00403 Heavy-metal-associated domain SSA_0148 PF03459 TOBE domain SSA_0148 PF17912 MalK OB fold domain SSA_0148 PF00005 ABC transporter SSA_0156 PF07724 AAA domain (Cdc48 subfamily) SSA_0156 PF17871 AAA lid domain SSA_0156 PF10431 C-terminal, D2-small domain, of ClpB protein SSA_0156 PF02861 Clp amino terminal domain, pathogenicity island component SSA_0156 PF00004 ATPase family associated with various cellular activities (AAA) SSA_0173 PF08241 Methyltransferase domain SSA_0174 PF01479 S4 domain SSA_0174 PF00579 tRNA synthetases class I (W and Y) SSA_0175 PF00905 Penicillin binding protein transpeptidase domain SSA_0175 PF00912 Transglycosylase SSA_0176 PF04563 RNA polymerase beta subunit SSA_0176 PF04561 RNA polymerase Rpb2, domain 2 SSA_0176 PF04565 RNA polymerase Rpb2, domain 3 SSA_0176 PF10385 RNA polymerase beta subunit external 1 domain SSA_0176 PF00562 RNA polymerase Rpb2, domain 6 SSA_0176 PF04560 RNA polymerase Rpb2, domain 7 SSA_0177 PF04998 RNA polymerase Rpb1, domain 5 SSA_0177 PF04997 RNA polymerase Rpb1, domain 1 SSA_0177 PF00623 RNA polymerase Rpb1, domain 2 SSA_0177 PF04983 RNA polymerase Rpb1, domain 3 SSA_0177 PF05000 RNA polymerase Rpb1, domain 4 SSA_0178 PF02350 UDP-N-acetylglucosamine 2-epimerase SSA_0182 PF01270 Glycosyl hydrolases family 8 SSA_0184 PF00437 Type II/IV secretion system protein SSA_0185 PF00482 Type II secretion system (T2SS), protein F SSA_0186 PF07963 Prokaryotic N-terminal methylation motif SSA_0192 PF00871 Acetokinase family SSA_0197 PF00809 Pterin binding enzyme SSA_0198 PF08245 Mur ligase middle domain SSA_0198 PF02875 Mur ligase family, glutamate ligase domain SSA_0199 PF01227 GTP cyclohydrolase I SSA_0200 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SSA_0200 PF02152 Dihydroneopterin aldolase SSA_0201 PF00005 ABC transporter SSA_0204 PF00486 Transcriptional regulatory protein, C terminal SSA_0204 PF00072 Response regulator receiver domain SSA_0205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_0205 PF00512 His Kinase A (phospho-acceptor) domain SSA_0208 PF08903 Domain of unknown function (DUF1846) SSA_0209 PF05343 M42 glutamyl aminopeptidase SSA_0211 PF00085 Thioredoxin SSA_0212 PF14794 Domain of unknown function (DUF4479) SSA_0212 PF01588 Putative tRNA binding domain SSA_0214 PF00436 Single-strand binding protein family SSA_0216 PF07730 Histidine kinase SSA_0217 PF00072 Response regulator receiver domain SSA_0217 PF00196 Bacterial regulatory proteins, luxR family SSA_0221 PF03609 PTS system sorbose-specific iic component SSA_0222 PF03613 PTS system mannose/fructose/sorbose family IID component SSA_0225 PF00166 Chaperonin 10 Kd subunit SSA_0226 PF00118 TCP-1/cpn60 chaperonin family SSA_0227 PF05738 Cna protein B-type domain SSA_0227 PF05737 Collagen binding domain SSA_0227 PF17802 Prealbumin-like fold domain SSA_0233 PF01594 AI-2E family transporter SSA_0236 PF16193 AAA C-terminal domain SSA_0236 PF05496 Holliday junction DNA helicase RuvB P-loop domain SSA_0236 PF12002 MgsA AAA+ ATPase C terminal SSA_0242 PF04452 RNA methyltransferase SSA_0243 PF00149 Calcineurin-like phosphoesterase SSA_0243 PF02872 5'-nucleotidase, C-terminal domain SSA_0250 PF13291 ACT domain SSA_0250 PF04607 Region found in RelA / SpoT proteins SSA_0250 PF02824 TGS domain SSA_0251 PF02580 D-Tyr-tRNA(Tyr) deacylase SSA_0254 PF01878 EVE domain SSA_0255 PF01047 MarR family SSA_0259 PF08534 Redoxin SSA_0260 PF01297 Zinc-uptake complex component A periplasmic SSA_0261 PF00950 ABC 3 transport family SSA_0262 PF00005 ABC transporter SSA_0263 PF01431 Peptidase family M13 SSA_0263 PF05649 Peptidase family M13 SSA_0266 PF13333 Integrase core domain SSA_0266 PF00665 Integrase core domain SSA_0267 PF00480 ROK family SSA_0268 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SSA_0269 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SSA_0270 PF02378 Phosphotransferase system, EIIC SSA_0271 PF01301 Glycosyl hydrolases family 35 SSA_0272 PF00248 Aldo/keto reductase family SSA_0274 PF08378 Nuclease-related domain SSA_0276 PF00535 Glycosyl transferase family 2 SSA_0276 PF01501 Glycosyl transferase family 8 SSA_0277 PF04055 Radical SAM superfamily SSA_0278 PF08220 DeoR-like helix-turn-helix domain SSA_0278 PF00455 DeoR C terminal sensor domain SSA_0279 PF04198 Putative sugar-binding domain SSA_0282 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SSA_0283 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SSA_0284 PF02378 Phosphotransferase system, EIIC SSA_0285 PF02901 Pyruvate formate lyase-like SSA_0285 PF01228 Glycine radical SSA_0286 PF00923 Transaldolase/Fructose-6-phosphate aldolase SSA_0287 PF00465 Iron-containing alcohol dehydrogenase SSA_0289 PF13603 Leucyl-tRNA synthetase, Domain 2 SSA_0289 PF00133 tRNA synthetases class I (I, L, M and V) SSA_0289 PF08264 Anticodon-binding domain of tRNA SSA_0289 PF09334 tRNA synthetases class I (M) SSA_0291 PF00106 short chain dehydrogenase SSA_0292 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SSA_0292 PF12833 Helix-turn-helix domain SSA_0295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SSA_0295 PF03466 LysR substrate binding domain SSA_0297 PF00390 Malic enzyme, N-terminal domain SSA_0297 PF03949 Malic enzyme, NAD binding domain SSA_0298 PF03547 Membrane transport protein SSA_0301 PF11611 Domain of unknown function (DUF4352) SSA_0302 PF00162 Phosphoglycerate kinase SSA_0303 PF08363 Glucan-binding protein C SSA_0303 PF00746 LPXTG cell wall anchor motif SSA_0303 PF06696 Streptococcal surface antigen repeat SSA_0303 PF17998 Cell surface antigen I/II C2 terminal domain SSA_0303 PF18652 Adhesin P1 N-terminal domain SSA_0303 PF16364 Cell surface antigen C-terminus SSA_0304 PF05257 CHAP domain SSA_0304 PF01476 LysM domain SSA_0306 PF13411 MerR HTH family regulatory protein SSA_0307 PF00120 Glutamine synthetase, catalytic domain SSA_0307 PF03951 Glutamine synthetase, beta-Grasp domain SSA_0310 PF08361 MAATS-type transcriptional repressor, C-terminal region SSA_0310 PF00440 Bacterial regulatory proteins, tetR family SSA_0312 PF00753 Metallo-beta-lactamase superfamily SSA_0312 PF17770 Ribonuclease J C-terminal domain SSA_0312 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SSA_0313 PF07288 Protein of unknown function (DUF1447) SSA_0314 PF01370 NAD dependent epimerase/dehydratase family SSA_0316 PF00814 Glycoprotease family SSA_0318 PF00814 Glycoprotease family SSA_0321 PF13649 Methyltransferase domain SSA_0322 PF07739 TipAS antibiotic-recognition domain SSA_0322 PF13411 MerR HTH family regulatory protein SSA_0324 PF08279 HTH domain SSA_0324 PF04394 Protein of unknown function, DUF536 SSA_0325 PF03009 Glycerophosphoryl diester phosphodiesterase family SSA_0326 PF02575 YbaB/EbfC DNA-binding family SSA_0328 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SSA_0328 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SSA_0328 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SSA_0329 PF00230 Major intrinsic protein SSA_0332 PF00144 Beta-lactamase SSA_0333 PF00288 GHMP kinases N terminal domain SSA_0333 PF10509 Galactokinase galactose-binding signature SSA_0333 PF08544 GHMP kinases C terminal SSA_0335 PF00288 GHMP kinases N terminal domain SSA_0335 PF08544 GHMP kinases C terminal SSA_0336 PF01070 FMN-dependent dehydrogenase SSA_0337 PF00368 Hydroxymethylglutaryl-coenzyme A reductase SSA_0338 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal SSA_0338 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal SSA_0342 PF02901 Pyruvate formate lyase-like SSA_0342 PF01228 Glycine radical SSA_0343 PF00817 impB/mucB/samB family SSA_0343 PF11799 impB/mucB/samB family C-terminal domain SSA_0349 PF00440 Bacterial regulatory proteins, tetR family SSA_0349 PF17932 Tetracyclin repressor-like, C-terminal domain SSA_0350 PF14490 Helix-hairpin-helix containing domain SSA_0350 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SSA_0350 PF13538 UvrD-like helicase C-terminal domain SSA_0351 PF10502 Signal peptidase, peptidase S26 SSA_0352 PF11858 Domain of unknown function (DUF3378) SSA_0352 PF01351 Ribonuclease HII SSA_0355 PF00488 MutS domain V SSA_0355 PF01713 Smr domain SSA_0356 PF03577 Peptidase family C69 SSA_0357 PF00085 Thioredoxin SSA_0362 PF00085 Thioredoxin SSA_0363 PF01235 Sodium:alanine symporter family SSA_0364 PF00375 Sodium:dicarboxylate symporter family SSA_0365 PF00924 Mechanosensitive ion channel SSA_0367 PF10026 Predicted Zn-dependent protease (DUF2268) SSA_0370 PF00583 Acetyltransferase (GNAT) family SSA_0371 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SSA_0371 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SSA_0373 PF01180 Dihydroorotate dehydrogenase SSA_0374 PF01641 SelR domain SSA_0374 PF01625 Peptide methionine sulfoxide reductase SSA_0375 PF03180 NLPA lipoprotein SSA_0376 PF00005 ABC transporter SSA_0376 PF09383 NIL domain SSA_0377 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0378 PF01979 Amidohydrolase family SSA_0379 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SSA_0379 PF00367 phosphotransferase system, EIIB SSA_0379 PF02378 Phosphotransferase system, EIIC SSA_0380 PF09587 Bacterial capsule synthesis protein PGA_cap SSA_0382 PF12833 Helix-turn-helix domain SSA_0383 PF00232 Glycosyl hydrolase family 1 SSA_0385 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0386 PF00571 CBS domain SSA_0386 PF00005 ABC transporter SSA_0388 PF05192 MutS domain III SSA_0388 PF00488 MutS domain V SSA_0388 PF01624 MutS domain I SSA_0388 PF05188 MutS domain II SSA_0388 PF05190 MutS family domain IV SSA_0391 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SSA_0391 PF00205 Thiamine pyrophosphate enzyme, central domain SSA_0391 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SSA_0393 PF12857 TOBE-like domain SSA_0393 PF17850 CysA C-terminal regulatory domain SSA_0393 PF00005 ABC transporter SSA_0395 PF00232 Glycosyl hydrolase family 1 SSA_0396 PF00561 alpha/beta hydrolase fold SSA_0398 PF00144 Beta-lactamase SSA_0400 PF00144 Beta-lactamase SSA_0401 PF00072 Response regulator receiver domain SSA_0401 PF00486 Transcriptional regulatory protein, C terminal SSA_0402 PF00672 HAMP domain SSA_0402 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB SSA_0402 PF00512 His Kinase A (phospho-acceptor) domain SSA_0402 PF08448 PAS fold SSA_0402 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_0405 PF01381 Helix-turn-helix SSA_0407 PF00005 ABC transporter SSA_0409 PF00005 ABC transporter SSA_0412 PF00005 ABC transporter SSA_0413 PF00425 chorismate binding enzyme SSA_0413 PF04715 Anthranilate synthase component I, N terminal region SSA_0415 PF01594 AI-2E family transporter SSA_0416 PF08267 Cobalamin-independent synthase, N-terminal domain SSA_0416 PF01717 Cobalamin-independent synthase, Catalytic domain SSA_0417 PF02219 Methylenetetrahydrofolate reductase SSA_0418 PF12833 Helix-turn-helix domain SSA_0418 PF02311 AraC-like ligand binding domain SSA_0419 PF16874 Glycosyl hydrolase family 36 C-terminal domain SSA_0419 PF16875 Glycosyl hydrolase family 36 N-terminal domain SSA_0421 PF00300 Histidine phosphatase superfamily (branch 1) SSA_0422 PF00300 Histidine phosphatase superfamily (branch 1) SSA_0428 PF00491 Arginase family SSA_0429 PF00221 Aromatic amino acid lyase SSA_0430 PF13520 Amino acid permease SSA_0432 PF01268 Formate--tetrahydrofolate ligase SSA_0433 PF04961 Formiminotransferase-cyclodeaminase SSA_0434 PF02971 Formiminotransferase domain SSA_0434 PF07837 Formiminotransferase domain, N-terminal subdomain SSA_0435 PF01175 Urocanase Rossmann-like domain SSA_0435 PF17392 Urocanase C-terminal domain SSA_0435 PF17391 Urocanase N-terminal domain SSA_0436 PF01979 Amidohydrolase family SSA_0437 PF01250 Ribosomal protein S6 SSA_0438 PF00436 Single-strand binding protein family SSA_0440 PF01084 Ribosomal protein S18 SSA_0441 PF00440 Bacterial regulatory proteins, tetR family SSA_0441 PF08361 MAATS-type transcriptional repressor, C-terminal region SSA_0442 PF00005 ABC transporter SSA_0448 PF17755 UvrA DNA-binding domain SSA_0448 PF00005 ABC transporter SSA_0448 PF17760 UvrA interaction domain SSA_0449 PF01321 Creatinase/Prolidase N-terminal domain SSA_0449 PF00557 Metallopeptidase family M24 SSA_0450 PF01132 Elongation factor P (EF-P) OB domain SSA_0450 PF08207 Elongation factor P (EF-P) KOW-like domain SSA_0450 PF09285 Elongation factor P, C-terminal SSA_0451 PF03780 Asp23 family, cell envelope-related function SSA_0452 PF01029 NusB family SSA_0453 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SSA_0453 PF03714 Bacterial pullanase-associated domain SSA_0453 PF00128 Alpha amylase, catalytic domain SSA_0454 PF00356 Bacterial regulatory proteins, lacI family SSA_0455 PF08244 Glycosyl hydrolases family 32 C terminal SSA_0455 PF00251 Glycosyl hydrolases family 32 N-terminal domain SSA_0456 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SSA_0456 PF00367 phosphotransferase system, EIIB SSA_0456 PF02378 Phosphotransferase system, EIIC SSA_0457 PF00480 ROK family SSA_0458 PF01327 Polypeptide deformylase SSA_0460 PF01047 MarR family SSA_0461 PF00005 ABC transporter SSA_0461 PF00664 ABC transporter transmembrane region SSA_0462 PF00664 ABC transporter transmembrane region SSA_0462 PF00005 ABC transporter SSA_0463 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SSA_0463 PF07685 CobB/CobQ-like glutamine amidotransferase domain SSA_0464 PF03186 CobD/Cbib protein SSA_0465 PF02570 Precorrin-8X methylmutase SSA_0466 PF02570 Precorrin-8X methylmutase SSA_0467 PF01888 CbiD SSA_0468 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SSA_0469 PF05175 Methyltransferase small domain SSA_0470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SSA_0471 PF11760 Cobalamin synthesis G N-terminal SSA_0471 PF01890 Cobalamin synthesis G C-terminus SSA_0471 PF11761 Cobalamin biosynthesis central region SSA_0472 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SSA_0473 PF02571 Precorrin-6x reductase CbiJ/CobK SSA_0474 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SSA_0474 PF02602 Uroporphyrinogen-III synthase HemD SSA_0475 PF06180 Cobalt chelatase (CbiK) SSA_0476 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SSA_0477 PF01891 Cobalt uptake substrate-specific transmembrane region SSA_0478 PF02553 Cobalt transport protein component CbiN SSA_0480 PF00005 ABC transporter SSA_0481 PF07685 CobB/CobQ-like glutamine amidotransferase domain SSA_0482 PF01923 Cobalamin adenosyltransferase SSA_0483 PF10414 Sirohaem synthase dimerisation region SSA_0483 PF14824 Sirohaem biosynthesis protein central SSA_0483 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SSA_0484 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SSA_0484 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SSA_0484 PF01488 Shikimate / quinate 5-dehydrogenase SSA_0485 PF03900 Porphobilinogen deaminase, C-terminal domain SSA_0485 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SSA_0487 PF00490 Delta-aminolevulinic acid dehydratase SSA_0488 PF00202 Aminotransferase class-III SSA_0489 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SSA_0490 PF02654 Cobalamin-5-phosphate synthase SSA_0491 PF00300 Histidine phosphatase superfamily (branch 1) SSA_0492 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SSA_0493 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SSA_0494 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SSA_0494 PF00005 ABC transporter SSA_0495 PF00005 ABC transporter SSA_0495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SSA_0497 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0498 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0498 PF12911 N-terminal TM domain of oligopeptide transport permease C SSA_0499 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SSA_0500 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0502 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0503 PF00005 ABC transporter SSA_0503 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SSA_0504 PF00005 ABC transporter SSA_0505 PF01613 Flavin reductase like domain SSA_0506 PF08331 Domain of unknown function (DUF1730) SSA_0510 PF00155 Aminotransferase class I and II SSA_0511 PF00288 GHMP kinases N terminal domain SSA_0512 PF02277 Phosphoribosyltransferase SSA_0513 PF01923 Cobalamin adenosyltransferase SSA_0514 PF00465 Iron-containing alcohol dehydrogenase SSA_0515 PF00936 BMC domain SSA_0516 PF00072 Response regulator receiver domain SSA_0516 PF03861 ANTAR domain SSA_0517 PF12282 Signal transduction histidine kinase SSA_0517 PF07568 Histidine kinase SSA_0517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_0518 PF06277 Ethanolamine utilisation protein EutA SSA_0519 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SSA_0520 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SSA_0521 PF00936 BMC domain SSA_0522 PF00936 BMC domain SSA_0523 PF00465 Iron-containing alcohol dehydrogenase SSA_0523 PF00171 Aldehyde dehydrogenase family SSA_0524 PF00936 BMC domain SSA_0525 PF00936 BMC domain SSA_0527 PF06130 Phosphate propanoyltransferase SSA_0530 PF04346 Ethanolamine utilisation protein, EutH SSA_0531 PF06249 Ethanolamine utilisation protein EutQ SSA_0532 PF00936 BMC domain SSA_0533 PF02286 Dehydratase large subunit SSA_0535 PF02288 Dehydratase medium subunit SSA_0536 PF02287 Dehydratase small subunit SSA_0537 PF08841 Diol dehydratase reactivase ATPase-like domain SSA_0537 PF18427 DD-reactivating factor swiveling domain SSA_0539 PF03928 Haem-degrading SSA_0540 PF00230 Major intrinsic protein SSA_0541 PF00871 Acetokinase family SSA_0543 PF02810 SEC-C motif SSA_0543 PF07516 SecA Wing and Scaffold domain SSA_0543 PF01043 SecA preprotein cross-linking domain SSA_0543 PF07517 SecA DEAD-like domain SSA_0544 PF00793 DAHP synthetase I family SSA_0546 PF00793 DAHP synthetase I family SSA_0547 PF01648 4'-phosphopantetheinyl transferase superfamily SSA_0548 PF00842 Alanine racemase, C-terminal domain SSA_0548 PF01168 Alanine racemase, N-terminal domain SSA_0549 PF17191 RecG wedge domain SSA_0549 PF00270 DEAD/DEAH box helicase SSA_0549 PF00271 Helicase conserved C-terminal domain SSA_0551 PF00710 Asparaginase, N-terminal SSA_0551 PF17763 Glutaminase/Asparaginase C-terminal domain SSA_0561 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SSA_0563 PF00582 Universal stress protein family SSA_0564 PF00155 Aminotransferase class I and II SSA_0566 PF06018 CodY GAF-like domain SSA_0566 PF08222 CodY helix-turn-helix domain SSA_0567 PF00857 Isochorismatase family SSA_0568 PF01336 OB-fold nucleic acid binding domain SSA_0568 PF00152 tRNA synthetases class II (D, K and N) SSA_0568 PF02938 GAD domain SSA_0569 PF02686 Glu-tRNAGln amidotransferase C subunit SSA_0570 PF01425 Amidase SSA_0571 PF02637 GatB domain SSA_0571 PF02934 GatB/GatE catalytic domain SSA_0572 PF00107 Zinc-binding dehydrogenase SSA_0572 PF08240 Alcohol dehydrogenase GroES-like domain SSA_0576 PF01926 50S ribosome-binding GTPase SSA_0577 PF01985 CRS1 / YhbY (CRM) domain SSA_0578 PF01467 Cytidylyltransferase-like SSA_0579 PF01966 HD domain SSA_0580 PF00857 Isochorismatase family SSA_0582 PF13649 Methyltransferase domain SSA_0583 PF05636 HIGH Nucleotidyl Transferase SSA_0586 PF01709 Transcriptional regulator SSA_0587 PF01546 Peptidase family M20/M25/M40 SSA_0587 PF07687 Peptidase dimerisation domain SSA_0588 PF00497 Bacterial extracellular solute-binding proteins, family 3 SSA_0589 PF07687 Peptidase dimerisation domain SSA_0589 PF01546 Peptidase family M20/M25/M40 SSA_0591 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase SSA_0592 PF07155 ECF-type riboflavin transporter, S component SSA_0593 PF12368 Rhodanase C-terminal SSA_0593 PF17773 UPF0176 acylphosphatase like domain SSA_0593 PF00581 Rhodanese-like domain SSA_0602 PF00005 ABC transporter SSA_0602 PF12558 ATP-binding cassette cobalt transporter SSA_0605 PF02527 rRNA small subunit methyltransferase G SSA_0606 PF12704 MacB-like periplasmic core domain SSA_0606 PF02687 FtsX-like permease family SSA_0606 PF00005 ABC transporter SSA_0608 PF07690 Major Facilitator Superfamily SSA_0609 PF00440 Bacterial regulatory proteins, tetR family SSA_0610 PF04011 LemA family SSA_0611 PF01435 Peptidase family M48 SSA_0612 PF01381 Helix-turn-helix SSA_0613 PF02324 Glycosyl hydrolase family 70 SSA_0613 PF01473 Putative cell wall binding repeat SSA_0615 PF01381 Helix-turn-helix SSA_0617 PF15975 Flotillin SSA_0617 PF01145 SPFH domain / Band 7 family SSA_0621 PF11798 IMS family HHH motif SSA_0621 PF00817 impB/mucB/samB family SSA_0621 PF11799 impB/mucB/samB family C-terminal domain SSA_0622 PF01726 LexA DNA binding domain SSA_0622 PF00717 Peptidase S24-like SSA_0625 PF01467 Cytidylyltransferase-like SSA_0626 PF13180 PDZ domain SSA_0626 PF05362 Lon protease (S16) C-terminal proteolytic domain SSA_0627 PF06265 Protein of unknown function (DUF1027) SSA_0628 PF04055 Radical SAM superfamily SSA_0631 PF00291 Pyridoxal-phosphate dependent enzyme SSA_0632 PF04715 Anthranilate synthase component I, N terminal region SSA_0632 PF00425 chorismate binding enzyme SSA_0633 PF00117 Glutamine amidotransferase class-I SSA_0634 PF00591 Glycosyl transferase family, a/b domain SSA_0634 PF02885 Glycosyl transferase family, helical bundle domain SSA_0635 PF00218 Indole-3-glycerol phosphate synthase SSA_0636 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SSA_0637 PF00291 Pyridoxal-phosphate dependent enzyme SSA_0638 PF00290 Tryptophan synthase alpha chain SSA_0644 PF00210 Ferritin-like domain SSA_0647 PF00581 Rhodanese-like domain SSA_0649 PF01479 S4 domain SSA_0649 PF00849 RNA pseudouridylate synthase SSA_0650 PF03144 Elongation factor Tu domain 2 SSA_0650 PF00009 Elongation factor Tu GTP binding domain SSA_0650 PF14492 Elongation Factor G, domain II SSA_0650 PF00679 Elongation factor G C-terminus SSA_0652 PF08245 Mur ligase middle domain SSA_0652 PF02875 Mur ligase family, glutamate ligase domain SSA_0653 PF03033 Glycosyltransferase family 28 N-terminal domain SSA_0653 PF04101 Glycosyltransferase family 28 C-terminal domain SSA_0654 PF08478 POTRA domain, FtsQ-type SSA_0654 PF03799 Cell division protein FtsQ SSA_0655 PF11983 Membrane-attachment and polymerisation-promoting switch SSA_0655 PF02491 SHS2 domain inserted in FTSA SSA_0656 PF00091 Tubulin/FtsZ family, GTPase domain SSA_0656 PF12327 FtsZ family, C-terminal domain SSA_0657 PF01168 Alanine racemase, N-terminal domain SSA_0658 PF04472 Cell division protein SepF SSA_0660 PF05103 DivIVA protein SSA_0661 PF08264 Anticodon-binding domain of tRNA SSA_0661 PF00133 tRNA synthetases class I (I, L, M and V) SSA_0665 PF00293 NUDIX domain SSA_0665 PF00300 Histidine phosphatase superfamily (branch 1) SSA_0667 PF08279 HTH domain SSA_0667 PF13280 WYL domain SSA_0669 PF07724 AAA domain (Cdc48 subfamily) SSA_0669 PF17871 AAA lid domain SSA_0669 PF10431 C-terminal, D2-small domain, of ClpB protein SSA_0669 PF00004 ATPase family associated with various cellular activities (AAA) SSA_0670 PF08796 Protein of unknown function (DUF1797) SSA_0671 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SSA_0671 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SSA_0672 PF00749 tRNA synthetases class I (E and Q), catalytic domain SSA_0673 PF01256 Carbohydrate kinase SSA_0674 PF13742 OB-fold nucleic acid binding domain SSA_0674 PF02601 Exonuclease VII, large subunit SSA_0675 PF02609 Exonuclease VII small subunit SSA_0676 PF00348 Polyprenyl synthetase SSA_0677 PF01728 FtsJ-like methyltransferase SSA_0677 PF01479 S4 domain SSA_0678 PF01316 Arginine repressor, DNA binding domain SSA_0678 PF02863 Arginine repressor, C-terminal domain SSA_0679 PF13476 AAA domain SSA_0680 PF00149 Calcineurin-like phosphoesterase SSA_0682 PF02645 Uncharacterised protein, DegV family COG1307 SSA_0683 PF00216 Bacterial DNA-binding protein SSA_0686 PF01475 Ferric uptake regulator family SSA_0688 PF00300 Histidine phosphatase superfamily (branch 1) SSA_0689 PF00905 Penicillin binding protein transpeptidase domain SSA_0689 PF03717 Penicillin-binding Protein dimerisation domain SSA_0690 PF13662 Toprim domain SSA_0690 PF02132 RecR protein SSA_0691 PF01820 D-ala D-ala ligase N-terminus SSA_0691 PF07478 D-ala D-ala ligase C-terminus SSA_0692 PF01225 Mur ligase family, catalytic domain SSA_0692 PF08245 Mur ligase middle domain SSA_0692 PF02875 Mur ligase family, glutamate ligase domain SSA_0694 PF00293 NUDIX domain SSA_0698 PF16658 Class II release factor RF3, C-terminal domain SSA_0698 PF03144 Elongation factor Tu domain 2 SSA_0698 PF00009 Elongation factor Tu GTP binding domain SSA_0702 PF00330 Aconitase family (aconitate hydratase) SSA_0702 PF00694 Aconitase C-terminal domain SSA_0703 PF00285 Citrate synthase, C-terminal domain SSA_0704 PF00180 Isocitrate/isopropylmalate dehydrogenase SSA_0706 PF00271 Helicase conserved C-terminal domain SSA_0706 PF00270 DEAD/DEAH box helicase SSA_0707 PF00455 DeoR C terminal sensor domain SSA_0707 PF08220 DeoR-like helix-turn-helix domain SSA_0708 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family SSA_0709 PF01541 GIY-YIG catalytic domain SSA_0711 PF05175 Methyltransferase small domain SSA_0713 PF01553 Acyltransferase SSA_0715 PF10531 SLBB domain SSA_0716 PF00753 Metallo-beta-lactamase superfamily SSA_0716 PF13567 Domain of unknown function (DUF4131) SSA_0716 PF03772 Competence protein SSA_0720 PF06144 DNA polymerase III, delta subunit SSA_0721 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SSA_0721 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SSA_0724 PF00005 ABC transporter SSA_0724 PF00664 ABC transporter transmembrane region SSA_0724 PF03412 Peptidase C39 family SSA_0726 PF00144 Beta-lactamase SSA_0730 PF01022 Bacterial regulatory protein, arsR family SSA_0733 PF10086 YhfC intramembrane metalloprotease SSA_0734 PF01022 Bacterial regulatory protein, arsR family SSA_0738 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SSA_0738 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SSA_0739 PF00696 Amino acid kinase family SSA_0740 PF03606 C4-dicarboxylate anaerobic carrier SSA_0741 PF01546 Peptidase family M20/M25/M40 SSA_0743 PF01316 Arginine repressor, DNA binding domain SSA_0743 PF02863 Arginine repressor, C-terminal domain SSA_0744 PF02547 Queuosine biosynthesis protein SSA_0746 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SSA_0747 PF07943 Penicillin-binding protein 5, C-terminal domain SSA_0747 PF00768 D-alanyl-D-alanine carboxypeptidase SSA_0748 PF01306 LacY proton/sugar symporter SSA_0751 PF08439 Oligopeptidase F SSA_0751 PF01432 Peptidase family M3 SSA_0752 PF01596 O-methyltransferase SSA_0753 PF13145 PPIC-type PPIASE domain SSA_0756 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SSA_0756 PF01411 tRNA synthetases class II (A) SSA_0756 PF02272 DHHA1 domain SSA_0757 PF01118 Semialdehyde dehydrogenase, NAD binding domain SSA_0757 PF02774 Semialdehyde dehydrogenase, dimerisation domain SSA_0758 PF01960 ArgJ family SSA_0759 PF00696 Amino acid kinase family SSA_0760 PF00202 Aminotransferase class-III SSA_0761 PF01381 Helix-turn-helix SSA_0767 PF00781 Diacylglycerol kinase catalytic domain SSA_0768 PF00268 Ribonucleotide reductase, small chain SSA_0770 PF08343 Ribonucleotide reductase N-terminal SSA_0770 PF00317 Ribonucleotide reductase, all-alpha domain SSA_0770 PF02867 Ribonucleotide reductase, barrel domain SSA_0771 PF00462 Glutaredoxin SSA_0772 PF00381 PTS HPr component phosphorylation site SSA_0773 PF00391 PEP-utilising enzyme, mobile domain SSA_0773 PF02896 PEP-utilising enzyme, TIM barrel domain SSA_0773 PF05524 PEP-utilising enzyme, N-terminal SSA_0774 PF00171 Aldehyde dehydrogenase family SSA_0775 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SSA_0775 PF00128 Alpha amylase, catalytic domain SSA_0775 PF02806 Alpha amylase, C-terminal all-beta domain SSA_0776 PF00132 Bacterial transferase hexapeptide (six repeats) SSA_0776 PF00483 Nucleotidyl transferase SSA_0777 PF00483 Nucleotidyl transferase SSA_0778 PF00534 Glycosyl transferases group 1 SSA_0778 PF08323 Starch synthase catalytic domain SSA_0779 PF00343 Carbohydrate phosphorylase SSA_0781 PF01238 Phosphomannose isomerase type I SSA_0782 PF00137 ATP synthase subunit C SSA_0783 PF00119 ATP synthase A chain SSA_0784 PF00430 ATP synthase B/B' CF(0) SSA_0785 PF00213 ATP synthase delta (OSCP) subunit SSA_0786 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SSA_0786 PF02874 ATP synthase alpha/beta family, beta-barrel domain SSA_0786 PF00306 ATP synthase alpha/beta chain, C terminal domain SSA_0787 PF00231 ATP synthase SSA_0788 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SSA_0788 PF02874 ATP synthase alpha/beta family, beta-barrel domain SSA_0789 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SSA_0789 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SSA_0791 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SSA_0793 PF01223 DNA/RNA non-specific endonuclease SSA_0796 PF00005 ABC transporter SSA_0796 PF16326 ABC transporter C-terminal domain SSA_0796 PF12848 ABC transporter SSA_0800 PF07685 CobB/CobQ-like glutamine amidotransferase domain SSA_0801 PF08353 Domain of unknown function (DUF1727) SSA_0801 PF08245 Mur ligase middle domain SSA_0802 PF02457 DisA bacterial checkpoint controller nucleotide-binding SSA_0804 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SSA_0804 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SSA_0804 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SSA_0804 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SSA_0807 PF01926 50S ribosome-binding GTPase SSA_0807 PF01018 GTP1/OBG SSA_0807 PF09269 Domain of unknown function (DUF1967) SSA_0809 PF01042 Endoribonuclease L-PSP SSA_0810 PF03668 P-loop ATPase protein family SSA_0811 PF01933 Uncharacterised protein family UPF0052 SSA_0812 PF10298 WhiA N-terminal LAGLIDADG-like domain SSA_0812 PF02650 WhiA C-terminal HTH domain SSA_0812 PF14527 WhiA LAGLIDADG-like domain SSA_0813 PF07992 Pyridine nucleotide-disulphide oxidoreductase SSA_0814 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SSA_0814 PF07992 Pyridine nucleotide-disulphide oxidoreductase SSA_0815 PF06993 Protein of unknown function (DUF1304) SSA_0820 PF01165 Ribosomal protein S21 SSA_0822 PF01741 Large-conductance mechanosensitive channel, MscL SSA_0824 PF10410 DnaB-helicase binding domain of primase SSA_0824 PF01807 CHC2 zinc finger SSA_0824 PF08275 DNA primase catalytic core, N-terminal domain SSA_0825 PF03979 Sigma-70 factor, region 1.1 SSA_0825 PF00140 Sigma-70 factor, region 1.2 SSA_0825 PF04542 Sigma-70 region 2 SSA_0825 PF04545 Sigma-70, region 4 SSA_0825 PF04539 Sigma-70 region 3 SSA_0826 PF01883 Iron-sulfur cluster assembly protein SSA_0829 PF00746 LPXTG cell wall anchor motif SSA_0829 PF00746 LPXTG cell wall anchor motif SSA_0830 PF08759 Glycosyltransferase GT-D fold SSA_0830 PF01501 Glycosyl transferase family 8 SSA_0832 PF00344 SecY translocase SSA_0833 PF16993 Accessory Sec system protein Asp1 SSA_0834 PF16929 Accessory Sec system GspB-transporter SSA_0835 PF15432 Accessory Sec secretory system ASP3 SSA_0836 PF07517 SecA DEAD-like domain SSA_0836 PF01043 SecA preprotein cross-linking domain SSA_0836 PF07516 SecA Wing and Scaffold domain SSA_0837 PF00534 Glycosyl transferases group 1 SSA_0839 PF16996 Accessory secretory protein Sec Asp4 SSA_0841 PF17000 Accessory secretory protein Sec, Asp5 SSA_0842 PF03788 LrgA family SSA_0843 PF04172 LrgB-like family SSA_0845 PF00005 ABC transporter SSA_0846 PF01336 OB-fold nucleic acid binding domain SSA_0846 PF02811 PHP domain SSA_0846 PF14579 Helix-hairpin-helix motif SSA_0846 PF07733 Bacterial DNA polymerase III alpha NTPase domain SSA_0846 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SSA_0847 PF00365 Phosphofructokinase SSA_0848 PF00224 Pyruvate kinase, barrel domain SSA_0848 PF02887 Pyruvate kinase, alpha/beta domain SSA_0851 PF01545 Cation efflux family SSA_0851 PF16916 Dimerisation domain of Zinc Transporter SSA_0852 PF00580 UvrD/REP helicase N-terminal domain SSA_0852 PF13361 UvrD-like helicase C-terminal domain SSA_0854 PF00293 NUDIX domain SSA_0855 PF01053 Cys/Met metabolism PLP-dependent enzyme SSA_0856 PF00535 Glycosyl transferase family 2 SSA_0858 PF04321 RmlD substrate binding domain SSA_0859 PF00121 Triosephosphate isomerase SSA_0862 PF02388 FemAB family SSA_0864 PF01966 HD domain SSA_0866 PF00689 Cation transporting ATPase, C-terminus SSA_0866 PF00690 Cation transporter/ATPase, N-terminus SSA_0869 PF00472 RF-1 domain SSA_0869 PF03462 PCRF domain SSA_0870 PF00005 ABC transporter SSA_0871 PF18075 FtsX extracellular domain SSA_0871 PF02687 FtsX-like permease family SSA_0872 PF00753 Metallo-beta-lactamase superfamily SSA_0873 PF00929 Exonuclease SSA_0873 PF13307 Helicase C-terminal domain SSA_0873 PF04851 Type III restriction enzyme, res subunit SSA_0874 PF03601 Conserved hypothetical protein 698 SSA_0875 PF01098 Cell cycle protein SSA_0878 PF00986 DNA gyrase B subunit, carboxyl terminus SSA_0878 PF01751 Toprim domain SSA_0878 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_0878 PF00204 DNA gyrase B SSA_0879 PF06160 Septation ring formation regulator, EzrA SSA_0883 PF02595 Glycerate kinase family SSA_0886 PF00113 Enolase, C-terminal TIM barrel domain SSA_0886 PF03952 Enolase, N-terminal domain SSA_0888 PF03448 MgtE intracellular N domain SSA_0888 PF01769 Divalent cation transporter SSA_0888 PF00571 CBS domain SSA_0891 PF10282 Lactonase, 7-bladed beta-propeller SSA_0894 PF00005 ABC transporter SSA_0895 PF02687 FtsX-like permease family SSA_0895 PF12704 MacB-like periplasmic core domain SSA_0896 PF00486 Transcriptional regulatory protein, C terminal SSA_0896 PF00072 Response regulator receiver domain SSA_0897 PF00512 His Kinase A (phospho-acceptor) domain SSA_0897 PF00672 HAMP domain SSA_0897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_0899 PF01594 AI-2E family transporter SSA_0901 PF03306 Alpha-acetolactate decarboxylase SSA_0907 PF05670 NFACT protein RNA binding domain SSA_0910 PF00005 ABC transporter SSA_0912 PF01409 tRNA synthetases class II core domain (F) SSA_0912 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SSA_0913 PF13673 Acetyltransferase (GNAT) domain SSA_0914 PF03483 B3/4 domain SSA_0914 PF03147 Ferredoxin-fold anticodon binding domain SSA_0914 PF01588 Putative tRNA binding domain SSA_0914 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SSA_0914 PF03484 tRNA synthetase B5 domain SSA_0921 PF13823 Alcohol dehydrogenase GroES-associated SSA_0921 PF08240 Alcohol dehydrogenase GroES-like domain SSA_0921 PF00107 Zinc-binding dehydrogenase SSA_0924 PF02687 FtsX-like permease family SSA_0925 PF00005 ABC transporter SSA_0928 PF04954 Siderophore-interacting protein SSA_0928 PF08021 Siderophore-interacting FAD-binding domain SSA_0928 PF00664 ABC transporter transmembrane region SSA_0928 PF00005 ABC transporter SSA_0929 PF00005 ABC transporter SSA_0929 PF00664 ABC transporter transmembrane region SSA_0934 PF00561 alpha/beta hydrolase fold SSA_0935 PF16198 tRNA pseudouridylate synthase B C-terminal domain SSA_0935 PF01509 TruB family pseudouridylate synthase (N terminal domain) SSA_0936 PF01687 Riboflavin kinase SSA_0936 PF06574 FAD synthetase SSA_0937 PF03960 ArsC family SSA_0938 PF05256 Uncharacterised protein family (UPF0223) SSA_0939 PF00459 Inositol monophosphatase family SSA_0940 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SSA_0940 PF17126 RsmF rRNA methyltransferase first C-terminal domain SSA_0940 PF01189 16S rRNA methyltransferase RsmB/F SSA_0941 PF12849 PBP superfamily domain SSA_0942 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0943 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0944 PF00005 ABC transporter SSA_0945 PF00005 ABC transporter SSA_0946 PF01895 PhoU domain SSA_0955 PF11838 ERAP1-like C-terminal domain SSA_0955 PF01433 Peptidase family M1 domain SSA_0956 PF17998 Cell surface antigen I/II C2 terminal domain SSA_0956 PF16364 Cell surface antigen C-terminus SSA_0956 PF08363 Glucan-binding protein C SSA_0956 PF06696 Streptococcal surface antigen repeat SSA_0956 PF08363 Glucan-binding protein C SSA_0956 PF17998 Cell surface antigen I/II C2 terminal domain SSA_0956 PF00746 LPXTG cell wall anchor motif SSA_0956 PF16364 Cell surface antigen C-terminus SSA_0956 PF06696 Streptococcal surface antigen repeat SSA_0956 PF18652 Adhesin P1 N-terminal domain SSA_0956 PF18652 Adhesin P1 N-terminal domain SSA_0956 PF00746 LPXTG cell wall anchor motif SSA_0959 PF00486 Transcriptional regulatory protein, C terminal SSA_0959 PF00072 Response regulator receiver domain SSA_0960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_0960 PF00512 His Kinase A (phospho-acceptor) domain SSA_0962 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SSA_0963 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain SSA_0963 PF01522 Polysaccharide deacetylase SSA_0964 PF00271 Helicase conserved C-terminal domain SSA_0964 PF00270 DEAD/DEAH box helicase SSA_0965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SSA_0965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SSA_0966 PF00485 Phosphoribulokinase / Uridine kinase family SSA_0975 PF00682 HMGL-like SSA_0975 PF08502 LeuA allosteric (dimerisation) domain SSA_0977 PF00180 Isocitrate/isopropylmalate dehydrogenase SSA_0980 PF00330 Aconitase family (aconitate hydratase) SSA_0981 PF00694 Aconitase C-terminal domain SSA_0984 PF01047 MarR family SSA_0986 PF00005 ABC transporter SSA_0986 PF00571 CBS domain SSA_0987 PF00528 Binding-protein-dependent transport system inner membrane component SSA_0993 PF08241 Methyltransferase domain SSA_0994 PF03575 Peptidase family S51 SSA_0996 PF13185 GAF domain SSA_0997 PF12169 DNA polymerase III subunits gamma and tau domain III SSA_0999 PF02237 Biotin protein ligase C terminal domain SSA_0999 PF03099 Biotin/lipoate A/B protein ligase family SSA_1000 PF00356 Bacterial regulatory proteins, lacI family SSA_1001 PF02311 AraC-like ligand binding domain SSA_1001 PF12833 Helix-turn-helix domain SSA_1002 PF16874 Glycosyl hydrolase family 36 C-terminal domain SSA_1002 PF16875 Glycosyl hydrolase family 36 N-terminal domain SSA_1003 PF01547 Bacterial extracellular solute-binding protein SSA_1004 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1005 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1006 PF00128 Alpha amylase, catalytic domain SSA_1007 PF17912 MalK OB fold domain SSA_1007 PF03459 TOBE domain SSA_1007 PF00005 ABC transporter SSA_1008 PF10509 Galactokinase galactose-binding signature SSA_1008 PF00288 GHMP kinases N terminal domain SSA_1008 PF08544 GHMP kinases C terminal SSA_1009 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SSA_1009 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SSA_1010 PF16363 GDP-mannose 4,6 dehydratase SSA_1012 PF00391 PEP-utilising enzyme, mobile domain SSA_1012 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SSA_1013 PF01066 CDP-alcohol phosphatidyltransferase SSA_1014 PF02666 Phosphatidylserine decarboxylase SSA_1016 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SSA_1016 PF00391 PEP-utilising enzyme, mobile domain SSA_1018 PF07501 G5 domain SSA_1018 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SSA_1018 PF04650 YSIRK type signal peptide SSA_1018 PF04650 YSIRK type signal peptide SSA_1018 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SSA_1018 PF07501 G5 domain SSA_1018 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SSA_1018 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SSA_1021 PF05343 M42 glutamyl aminopeptidase SSA_1024 PF00128 Alpha amylase, catalytic domain SSA_1024 PF09154 Domain of unknown function (DUF1939) SSA_1026 PF00005 ABC transporter SSA_1029 PF02645 Uncharacterised protein, DegV family COG1307 SSA_1032 PF01649 Ribosomal protein S20 SSA_1033 PF00485 Phosphoribulokinase / Uridine kinase family SSA_1034 PF05175 Methyltransferase small domain SSA_1035 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SSA_1035 PF02885 Glycosyl transferase family, helical bundle domain SSA_1035 PF00591 Glycosyl transferase family, a/b domain SSA_1036 PF01791 DeoC/LacD family aldolase SSA_1037 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SSA_1038 PF02608 ABC transporter substrate-binding protein PnrA-like SSA_1039 PF00005 ABC transporter SSA_1040 PF02653 Branched-chain amino acid transport system / permease component SSA_1041 PF02653 Branched-chain amino acid transport system / permease component SSA_1042 PF01522 Polysaccharide deacetylase SSA_1043 PF03447 Homoserine dehydrogenase, NAD binding domain SSA_1043 PF00742 Homoserine dehydrogenase SSA_1044 PF08544 GHMP kinases C terminal SSA_1044 PF00288 GHMP kinases N terminal domain SSA_1047 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SSA_1047 PF01565 FAD binding domain SSA_1048 PF08402 TOBE domain SSA_1048 PF00005 ABC transporter SSA_1049 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1050 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1051 PF13416 Bacterial extracellular solute-binding protein SSA_1053 PF02896 PEP-utilising enzyme, TIM barrel domain SSA_1053 PF00391 PEP-utilising enzyme, mobile domain SSA_1053 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SSA_1054 PF00571 CBS domain SSA_1054 PF08279 HTH domain SSA_1055 PF03618 Kinase/pyrophosphorylase SSA_1056 PF06874 Firmicute fructose-1,6-bisphosphatase SSA_1057 PF00266 Aminotransferase class-V SSA_1058 PF02926 THUMP domain SSA_1058 PF02568 Thiamine biosynthesis protein (ThiI) SSA_1061 PF00829 Ribosomal prokaryotic L21 protein SSA_1062 PF01016 Ribosomal L27 protein SSA_1065 PF01915 Glycosyl hydrolase family 3 C-terminal domain SSA_1065 PF00933 Glycosyl hydrolase family 3 N terminal domain SSA_1066 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SSA_1067 PF00583 Acetyltransferase (GNAT) family SSA_1068 PF03466 LysR substrate binding domain SSA_1068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SSA_1069 PF01252 Signal peptidase (SPase) II SSA_1070 PF01479 S4 domain SSA_1070 PF00849 RNA pseudouridylate synthase SSA_1072 PF00696 Amino acid kinase family SSA_1072 PF01472 PUA domain SSA_1073 PF00171 Aldehyde dehydrogenase family SSA_1074 PF14748 Pyrroline-5-carboxylate reductase dimerisation SSA_1074 PF03807 NADP oxidoreductase coenzyme F420-dependent SSA_1075 PF06969 HemN C-terminal domain SSA_1075 PF04055 Radical SAM superfamily SSA_1077 PF13344 Haloacid dehalogenase-like hydrolase SSA_1079 PF02517 CPBP intramembrane metalloprotease SSA_1080 PF00455 DeoR C terminal sensor domain SSA_1080 PF08220 DeoR-like helix-turn-helix domain SSA_1081 PF00294 pfkB family carbohydrate kinase SSA_1082 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SSA_1082 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SSA_1084 PF02645 Uncharacterised protein, DegV family COG1307 SSA_1085 PF05173 Dihydrodipicolinate reductase, C-terminus SSA_1085 PF01113 Dihydrodipicolinate reductase, N-terminus SSA_1086 PF13735 tRNA nucleotidyltransferase domain 2 putative SSA_1086 PF01743 Poly A polymerase head domain SSA_1086 PF12627 Probable RNA and SrmB- binding site of polymerase A SSA_1087 PF12848 ABC transporter SSA_1087 PF16326 ABC transporter C-terminal domain SSA_1087 PF00005 ABC transporter SSA_1090 PF00480 ROK family SSA_1091 PF00303 Thymidylate synthase SSA_1092 PF00186 Dihydrofolate reductase SSA_1093 PF06689 ClpX C4-type zinc finger SSA_1093 PF07724 AAA domain (Cdc48 subfamily) SSA_1093 PF10431 C-terminal, D2-small domain, of ClpB protein SSA_1094 PF01926 50S ribosome-binding GTPase SSA_1095 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SSA_1095 PF01476 LysM domain SSA_1096 PF02574 Homocysteine S-methyltransferase SSA_1098 PF01226 Formate/nitrite transporter SSA_1099 PF06594 Haemolysin-type calcium binding protein related domain SSA_1099 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SSA_1100 PF03412 Peptidase C39 family SSA_1100 PF00005 ABC transporter SSA_1100 PF00664 ABC transporter transmembrane region SSA_1104 PF00466 Ribosomal protein L10 SSA_1105 PF00542 Ribosomal protein L7/L12 C-terminal domain SSA_1105 PF16320 Ribosomal protein L7/L12 dimerisation domain SSA_1106 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SSA_1106 PF04650 YSIRK type signal peptide SSA_1106 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SSA_1106 PF00746 LPXTG cell wall anchor motif SSA_1106 PF07501 G5 domain SSA_1106 PF07581 The GLUG motif SSA_1107 PF00005 ABC transporter SSA_1107 PF00664 ABC transporter transmembrane region SSA_1109 PF00005 ABC transporter SSA_1109 PF00664 ABC transporter transmembrane region SSA_1111 PF05525 Branched-chain amino acid transport protein SSA_1113 PF00486 Transcriptional regulatory protein, C terminal SSA_1113 PF00072 Response regulator receiver domain SSA_1114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1114 PF00512 His Kinase A (phospho-acceptor) domain SSA_1115 PF02683 Cytochrome C biogenesis protein transmembrane region SSA_1117 PF01641 SelR domain SSA_1117 PF08534 Redoxin SSA_1117 PF01625 Peptide methionine sulfoxide reductase SSA_1118 PF01641 SelR domain SSA_1118 PF01625 Peptide methionine sulfoxide reductase SSA_1119 PF00072 Response regulator receiver domain SSA_1119 PF12833 Helix-turn-helix domain SSA_1120 PF02743 Cache domain SSA_1120 PF06580 Histidine kinase SSA_1120 PF00672 HAMP domain SSA_1120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1121 PF02683 Cytochrome C biogenesis protein transmembrane region SSA_1122 PF00578 AhpC/TSA family SSA_1124 PF03358 NADPH-dependent FMN reductase SSA_1124 PF00890 FAD binding domain SSA_1124 PF04205 FMN-binding domain SSA_1125 PF04205 FMN-binding domain SSA_1125 PF03358 NADPH-dependent FMN reductase SSA_1125 PF00890 FAD binding domain SSA_1126 PF02424 ApbE family SSA_1127 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SSA_1127 PF07992 Pyridine nucleotide-disulphide oxidoreductase SSA_1128 PF00654 Voltage gated chloride channel SSA_1129 PF09375 Imelysin SSA_1130 PF10518 TAT (twin-arginine translocation) pathway signal sequence SSA_1130 PF04261 Dyp-type peroxidase family SSA_1131 PF03239 Iron permease FTR1 family SSA_1132 PF00902 Sec-independent protein translocase protein (TatC) SSA_1133 PF02416 mttA/Hcf106 family SSA_1134 PF00156 Phosphoribosyl transferase domain SSA_1135 PF01554 MatE SSA_1136 PF10431 C-terminal, D2-small domain, of ClpB protein SSA_1136 PF00004 ATPase family associated with various cellular activities (AAA) SSA_1136 PF07724 AAA domain (Cdc48 subfamily) SSA_1136 PF17871 AAA lid domain SSA_1136 PF02861 Clp amino terminal domain, pathogenicity island component SSA_1137 PF07992 Pyridine nucleotide-disulphide oxidoreductase SSA_1137 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SSA_1138 PF00676 Dehydrogenase E1 component SSA_1139 PF02780 Transketolase, C-terminal domain SSA_1139 PF02779 Transketolase, pyrimidine binding domain SSA_1140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SSA_1140 PF00364 Biotin-requiring enzyme SSA_1140 PF02817 e3 binding domain SSA_1143 PF01554 MatE SSA_1146 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SSA_1147 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SSA_1148 PF02378 Phosphotransferase system, EIIC SSA_1149 PF00232 Glycosyl hydrolase family 1 SSA_1150 PF01361 Tautomerase enzyme SSA_1151 PF00265 Thymidine kinase SSA_1152 PF00472 RF-1 domain SSA_1152 PF03462 PCRF domain SSA_1153 PF05175 Methyltransferase small domain SSA_1154 PF03481 Putative GTP-binding controlling metal-binding SSA_1154 PF01300 Telomere recombination SSA_1155 PF00464 Serine hydroxymethyltransferase SSA_1163 PF00958 GMP synthase C terminal domain SSA_1163 PF00117 Glutamine amidotransferase class-I SSA_1163 PF02540 NAD synthase SSA_1165 PF07702 UTRA domain SSA_1165 PF00392 Bacterial regulatory proteins, gntR family SSA_1166 PF04297 Putative helix-turn-helix protein, YlxM / p13 like SSA_1167 PF00448 SRP54-type protein, GTPase domain SSA_1167 PF02978 Signal peptide binding domain SSA_1167 PF02881 SRP54-type protein, helical bundle domain SSA_1171 PF00589 Phage integrase family SSA_1173 PF10437 Bacterial lipoate protein ligase C-terminus SSA_1173 PF03099 Biotin/lipoate A/B protein ligase family SSA_1174 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SSA_1174 PF07992 Pyridine nucleotide-disulphide oxidoreductase SSA_1175 PF02817 e3 binding domain SSA_1175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SSA_1175 PF00364 Biotin-requiring enzyme SSA_1176 PF02780 Transketolase, C-terminal domain SSA_1176 PF02779 Transketolase, pyrimidine binding domain SSA_1178 PF00676 Dehydrogenase E1 component SSA_1182 PF01134 Glucose inhibited division protein A SSA_1184 PF01131 DNA topoisomerase SSA_1184 PF01396 Topoisomerase DNA binding C4 zinc finger SSA_1184 PF01751 Toprim domain SSA_1185 PF02481 DNA recombination-mediator protein A SSA_1185 PF18255 DNA processing protein A sterile alpha motif domain SSA_1186 PF14602 Hexapeptide repeat of succinyl-transferase SSA_1186 PF12464 Maltose acetyltransferase SSA_1187 PF03123 CAT RNA binding domain SSA_1187 PF00874 PRD domain SSA_1188 PF01351 Ribonuclease HII SSA_1189 PF01926 50S ribosome-binding GTPase SSA_1193 PF00701 Dihydrodipicolinate synthetase family SSA_1194 PF02774 Semialdehyde dehydrogenase, dimerisation domain SSA_1194 PF01118 Semialdehyde dehydrogenase, NAD binding domain SSA_1200 PF01268 Formate--tetrahydrofolate ligase SSA_1202 PF02441 Flavoprotein SSA_1203 PF12822 ECF transporter, substrate-specific component SSA_1204 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SSA_1204 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SSA_1204 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SSA_1204 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SSA_1206 PF00730 HhH-GPD superfamily base excision DNA repair protein SSA_1206 PF14815 NUDIX domain SSA_1207 PF01515 Phosphate acetyl/butaryl transferase SSA_1208 PF01479 S4 domain SSA_1208 PF00849 RNA pseudouridylate synthase SSA_1209 PF01513 ATP-NAD kinase SSA_1210 PF04607 Region found in RelA / SpoT proteins SSA_1212 PF14572 Phosphoribosyl synthetase-associated domain SSA_1212 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SSA_1213 PF00266 Aminotransferase class-V SSA_1216 PF06971 Putative DNA-binding protein N-terminus SSA_1216 PF02629 CoA binding domain SSA_1217 PF07722 Peptidase C26 SSA_1218 PF04002 RadC-like JAB domain SSA_1219 PF04203 Sortase domain SSA_1220 PF00521 DNA gyrase/topoisomerase IV, subunit A SSA_1220 PF03989 DNA gyrase C-terminal domain, beta-propeller SSA_1221 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SSA_1221 PF00056 lactate/malate dehydrogenase, NAD binding domain SSA_1223 PF00575 S1 RNA binding domain SSA_1225 PF01063 Amino-transferase class IV SSA_1226 PF00521 DNA gyrase/topoisomerase IV, subunit A SSA_1226 PF03989 DNA gyrase C-terminal domain, beta-propeller SSA_1227 PF04439 Streptomycin adenylyltransferase SSA_1232 PF00204 DNA gyrase B SSA_1232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1232 PF01751 Toprim domain SSA_1232 PF00986 DNA gyrase B subunit, carboxyl terminus SSA_1233 PF02660 Glycerol-3-phosphate acyltransferase SSA_1234 PF00149 Calcineurin-like phosphoesterase SSA_1234 PF02872 5'-nucleotidase, C-terminal domain SSA_1235 PF01979 Amidohydrolase family SSA_1236 PF00293 NUDIX domain SSA_1237 PF03167 Uracil DNA glycosylase superfamily SSA_1240 PF00156 Phosphoribosyl transferase domain SSA_1241 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SSA_1242 PF01180 Dihydroorotate dehydrogenase SSA_1243 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B SSA_1243 PF00175 Oxidoreductase NAD-binding domain SSA_1243 PF00970 Oxidoreductase FAD-binding domain SSA_1245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SSA_1245 PF03466 LysR substrate binding domain SSA_1246 PF09659 CRISPR-associated protein (Cas_Csm6) SSA_1247 PF03787 RAMP superfamily SSA_1248 PF17953 CRISPR Csm4 C-terminal domain SSA_1249 PF03787 RAMP superfamily SSA_1250 PF03750 Csm2 Type III-A SSA_1251 PF18211 Csm1 subunit domain B SSA_1251 PF01966 HD domain SSA_1252 PF10040 CRISPR-associated endoribonuclease Cas6 SSA_1253 PF09827 CRISPR associated protein Cas2 SSA_1255 PF01867 CRISPR associated protein Cas1 SSA_1256 PF02146 Sir2 family SSA_1258 PF01048 Phosphorylase superfamily SSA_1259 PF01048 Phosphorylase superfamily SSA_1260 PF01676 Metalloenzyme superfamily SSA_1261 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SSA_1262 PF10396 GTP-binding protein TrmE N-terminus SSA_1262 PF12631 MnmE helical domain SSA_1262 PF01926 50S ribosome-binding GTPase SSA_1265 PF01245 Ribosomal protein L19 SSA_1266 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SSA_1267 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SSA_1269 PF01458 Uncharacterized protein family (UPF0051) SSA_1270 PF00258 Flavodoxin SSA_1271 PF01368 DHH family SSA_1271 PF02272 DHHA1 domain SSA_1272 PF01197 Ribosomal protein L31 SSA_1277 PF02557 D-alanyl-D-alanine carboxypeptidase SSA_1278 PF01206 Sulfurtransferase TusA SSA_1278 PF00581 Rhodanese-like domain SSA_1279 PF08240 Alcohol dehydrogenase GroES-like domain SSA_1279 PF00107 Zinc-binding dehydrogenase SSA_1281 PF03167 Uracil DNA glycosylase superfamily SSA_1282 PF01546 Peptidase family M20/M25/M40 SSA_1283 PF00881 Nitroreductase family SSA_1297 PF08459 UvrC Helix-hairpin-helix N-terminal SSA_1297 PF01541 GIY-YIG catalytic domain SSA_1297 PF02151 UvrB/uvrC motif SSA_1299 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1300 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1302 PF01746 tRNA (Guanine-1)-methyltransferase SSA_1303 PF05239 PRC-barrel domain SSA_1303 PF01782 RimM N-terminal domain SSA_1306 PF02254 TrkA-N domain SSA_1306 PF02080 TrkA-C domain SSA_1307 PF02386 Cation transport protein SSA_1310 PF00886 Ribosomal protein S16 SSA_1311 PF13419 Haloacid dehalogenase-like hydrolase SSA_1313 PF06445 GyrI-like small molecule binding domain SSA_1313 PF12833 Helix-turn-helix domain SSA_1318 PF06421 GTP-binding protein LepA C-terminus SSA_1318 PF00009 Elongation factor Tu GTP binding domain SSA_1318 PF00679 Elongation factor G C-terminus SSA_1318 PF03144 Elongation factor Tu domain 2 SSA_1321 PF00762 Ferrochelatase SSA_1325 PF00106 short chain dehydrogenase SSA_1326 PF07687 Peptidase dimerisation domain SSA_1326 PF01546 Peptidase family M20/M25/M40 SSA_1340 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SSA_1340 PF01297 Zinc-uptake complex component A periplasmic SSA_1341 PF02142 MGS-like domain SSA_1341 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SSA_1341 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SSA_1342 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SSA_1342 PF00117 Glutamine amidotransferase class-I SSA_1343 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SSA_1343 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SSA_1344 PF00860 Permease family SSA_1345 PF00156 Phosphoribosyl transferase domain SSA_1347 PF08274 PhnA Zinc-Ribbon SSA_1347 PF03831 PhnA domain SSA_1349 PF08279 HTH domain SSA_1349 PF02829 3H domain SSA_1350 PF00293 NUDIX domain SSA_1354 PF00583 Acetyltransferase (GNAT) family SSA_1356 PF04851 Type III restriction enzyme, res subunit SSA_1356 PF00271 Helicase conserved C-terminal domain SSA_1356 PF02151 UvrB/uvrC motif SSA_1356 PF12344 Ultra-violet resistance protein B SSA_1356 PF17757 UvrB interaction domain SSA_1359 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1360 PF00005 ABC transporter SSA_1362 PF00665 Integrase core domain SSA_1362 PF13333 Integrase core domain SSA_1365 PF00144 Beta-lactamase SSA_1369 PF00144 Beta-lactamase SSA_1371 PF00144 Beta-lactamase SSA_1373 PF12848 ABC transporter SSA_1373 PF00005 ABC transporter SSA_1374 PF00005 ABC transporter SSA_1374 PF00664 ABC transporter transmembrane region SSA_1375 PF00005 ABC transporter SSA_1375 PF00664 ABC transporter transmembrane region SSA_1377 PF00152 tRNA synthetases class II (D, K and N) SSA_1377 PF01336 OB-fold nucleic acid binding domain SSA_1383 PF00155 Aminotransferase class I and II SSA_1385 PF01047 MarR family SSA_1386 PF02525 Flavodoxin-like fold SSA_1395 PF03883 Peroxide stress protein YaaA SSA_1398 PF03006 Haemolysin-III related SSA_1401 PF00392 Bacterial regulatory proteins, gntR family SSA_1401 PF00155 Aminotransferase class I and II SSA_1402 PF00005 ABC transporter SSA_1402 PF00664 ABC transporter transmembrane region SSA_1403 PF00664 ABC transporter transmembrane region SSA_1403 PF00005 ABC transporter SSA_1404 PF04237 YjbR SSA_1405 PF03932 CutC family SSA_1406 PF00583 Acetyltransferase (GNAT) family SSA_1409 PF16363 GDP-mannose 4,6 dehydratase SSA_1410 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SSA_1411 PF00483 Nucleotidyl transferase SSA_1413 PF02535 ZIP Zinc transporter SSA_1414 PF00293 NUDIX domain SSA_1415 PF01266 FAD dependent oxidoreductase SSA_1416 PF01784 NIF3 (NGG1p interacting factor 3) SSA_1417 PF04816 tRNA (adenine(22)-N(1))-methyltransferase SSA_1418 PF02798 Glutathione S-transferase, N-terminal domain SSA_1420 PF04204 Homoserine O-succinyltransferase SSA_1421 PF00156 Phosphoribosyl transferase domain SSA_1423 PF02272 DHHA1 domain SSA_1423 PF01368 DHH family SSA_1423 PF10141 Single-strand DNA-specific exonuclease, C terminal domain SSA_1423 PF17768 RecJ OB domain SSA_1428 PF05175 Methyltransferase small domain SSA_1429 PF00106 short chain dehydrogenase SSA_1430 PF00753 Metallo-beta-lactamase superfamily SSA_1430 PF12706 Beta-lactamase superfamily domain SSA_1432 PF13167 GTP-binding GTPase N-terminal SSA_1432 PF01926 50S ribosome-binding GTPase SSA_1432 PF16360 GTP-binding GTPase Middle Region SSA_1436 PF13280 WYL domain SSA_1436 PF08279 HTH domain SSA_1440 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SSA_1441 PF01502 Phosphoribosyl-AMP cyclohydrolase SSA_1442 PF00977 Histidine biosynthesis protein SSA_1443 PF00977 Histidine biosynthesis protein SSA_1444 PF00117 Glutamine amidotransferase class-I SSA_1445 PF00475 Imidazoleglycerol-phosphate dehydratase SSA_1446 PF00815 Histidinol dehydrogenase SSA_1447 PF01634 ATP phosphoribosyltransferase SSA_1448 PF13393 Histidyl-tRNA synthetase SSA_1449 PF00155 Aminotransferase class I and II SSA_1451 PF13361 UvrD-like helicase C-terminal domain SSA_1451 PF00580 UvrD/REP helicase N-terminal domain SSA_1451 PF12705 PD-(D/E)XK nuclease superfamily SSA_1452 PF12705 PD-(D/E)XK nuclease superfamily SSA_1457 PF00128 Alpha amylase, catalytic domain SSA_1457 PF02903 Alpha amylase, N-terminal ig-like domain SSA_1458 PF01636 Phosphotransferase enzyme family SSA_1459 PF05958 tRNA (Uracil-5-)-methyltransferase SSA_1460 PF03816 Cell envelope-related transcriptional attenuator domain SSA_1462 PF00800 Prephenate dehydratase SSA_1463 PF01202 Shikimate kinase SSA_1464 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SSA_1465 PF06133 Control of competence regulator ComK, YlbF/YmcA SSA_1466 PF02153 Prephenate dehydrogenase SSA_1467 PF01264 Chorismate synthase SSA_1468 PF01761 3-dehydroquinate synthase SSA_1469 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SSA_1469 PF08501 Shikimate dehydrogenase substrate binding domain SSA_1470 PF01487 Type I 3-dehydroquinase SSA_1471 PF17785 PUA-like domain SSA_1471 PF10672 S-adenosylmethionine-dependent methyltransferase SSA_1476 PF00884 Sulfatase SSA_1479 PF01610 Transposase SSA_1479 PF13683 Integrase core domain SSA_1481 PF00144 Beta-lactamase SSA_1482 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SSA_1482 PF00128 Alpha amylase, catalytic domain SSA_1482 PF17999 Pullulanase N1-terminal domain SSA_1483 PF00781 Diacylglycerol kinase catalytic domain SSA_1484 PF01653 NAD-dependent DNA ligase adenylation domain SSA_1484 PF03120 NAD-dependent DNA ligase OB-fold domain SSA_1484 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SSA_1484 PF00533 BRCA1 C Terminus (BRCT) domain SSA_1484 PF12826 Helix-hairpin-helix motif SSA_1485 PF06177 QueT transporter SSA_1486 PF04138 GtrA-like protein SSA_1488 PF01047 MarR family SSA_1491 PF00557 Metallopeptidase family M24 SSA_1492 PF00392 Bacterial regulatory proteins, gntR family SSA_1492 PF07085 DRTGG domain SSA_1492 PF00571 CBS domain SSA_1492 PF03061 Thioesterase superfamily SSA_1494 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SSA_1495 PF02772 S-adenosylmethionine synthetase, central domain SSA_1495 PF02773 S-adenosylmethionine synthetase, C-terminal domain SSA_1495 PF00438 S-adenosylmethionine synthetase, N-terminal domain SSA_1497 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SSA_1498 PF00453 Ribosomal protein L20 SSA_1499 PF01632 Ribosomal protein L35 SSA_1500 PF00707 Translation initiation factor IF-3, C-terminal domain SSA_1500 PF05198 Translation initiation factor IF-3, N-terminal domain SSA_1501 PF02224 Cytidylate kinase SSA_1505 PF00884 Sulfatase SSA_1507 PF00005 ABC transporter SSA_1509 PF00535 Glycosyl transferase family 2 SSA_1513 PF00535 Glycosyl transferase family 2 SSA_1513 PF01501 Glycosyl transferase family 8 SSA_1516 PF00535 Glycosyl transferase family 2 SSA_1517 PF00535 Glycosyl transferase family 2 SSA_1517 PF01501 Glycosyl transferase family 8 SSA_1518 PF01501 Glycosyl transferase family 8 SSA_1518 PF00535 Glycosyl transferase family 2 SSA_1520 PF03143 Elongation factor Tu C-terminal domain SSA_1520 PF00009 Elongation factor Tu GTP binding domain SSA_1520 PF03144 Elongation factor Tu domain 2 SSA_1521 PF00311 Phosphoenolpyruvate carboxylase SSA_1522 PF01098 Cell cycle protein SSA_1523 PF00255 Glutathione peroxidase SSA_1527 PF04073 Aminoacyl-tRNA editing domain SSA_1528 PF00300 Histidine phosphatase superfamily (branch 1) SSA_1529 PF01336 OB-fold nucleic acid binding domain SSA_1529 PF00152 tRNA synthetases class II (D, K and N) SSA_1530 PF12704 MacB-like periplasmic core domain SSA_1530 PF02687 FtsX-like permease family SSA_1531 PF00005 ABC transporter SSA_1532 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SSA_1533 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SSA_1533 PF07992 Pyridine nucleotide-disulphide oxidoreductase SSA_1536 PF02632 BioY family SSA_1537 PF02229 Transcriptional Coactivator p15 (PC4) SSA_1541 PF01136 Peptidase family U32 SSA_1541 PF16325 Peptidase family U32 C-terminal domain SSA_1544 PF12732 YtxH-like protein SSA_1546 PF01790 Prolipoprotein diacylglyceryl transferase SSA_1547 PF02603 HPr Serine kinase N terminus SSA_1547 PF07475 HPr Serine kinase C-terminal domain SSA_1548 PF00293 NUDIX domain SSA_1550 PF17283 SprT-like zinc ribbon domain SSA_1550 PF10263 SprT-like family SSA_1551 PF16921 Tex protein YqgF-like domain SSA_1551 PF17674 HHH domain SSA_1551 PF00575 S1 RNA binding domain SSA_1551 PF09371 Tex-like protein N-terminal domain SSA_1553 PF03773 Predicted permease SSA_1554 PF09323 Domain of unknown function (DUF1980) SSA_1555 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SSA_1555 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SSA_1557 PF02881 SRP54-type protein, helical bundle domain SSA_1557 PF00448 SRP54-type protein, GTPase domain SSA_1560 PF06470 SMC proteins Flexible Hinge Domain SSA_1560 PF02463 RecF/RecN/SMC N terminal domain SSA_1561 PF00035 Double-stranded RNA binding motif SSA_1561 PF14622 Ribonuclease-III-like SSA_1562 PF04304 Protein of unknown function (DUF454) SSA_1563 PF00753 Metallo-beta-lactamase superfamily SSA_1564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1564 PF00672 HAMP domain SSA_1564 PF13426 PAS domain SSA_1564 PF00512 His Kinase A (phospho-acceptor) domain SSA_1565 PF00486 Transcriptional regulatory protein, C terminal SSA_1565 PF00072 Response regulator receiver domain SSA_1566 PF00005 ABC transporter SSA_1567 PF00497 Bacterial extracellular solute-binding proteins, family 3 SSA_1568 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1569 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1571 PF02824 TGS domain SSA_1571 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SSA_1571 PF03129 Anticodon binding domain SSA_1571 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SSA_1574 PF13439 Glycosyltransferase Family 4 SSA_1574 PF00534 Glycosyl transferases group 1 SSA_1575 PF13439 Glycosyltransferase Family 4 SSA_1575 PF00534 Glycosyl transferases group 1 SSA_1576 PF00356 Bacterial regulatory proteins, lacI family SSA_1577 PF00557 Metallopeptidase family M24 SSA_1577 PF01321 Creatinase/Prolidase N-terminal domain SSA_1578 PF01032 FecCD transport family SSA_1579 PF00005 ABC transporter SSA_1583 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SSA_1583 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SSA_1584 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SSA_1585 PF13460 NAD(P)H-binding SSA_1586 PF02082 Transcriptional regulator SSA_1589 PF00005 ABC transporter SSA_1589 PF12704 MacB-like periplasmic core domain SSA_1589 PF02687 FtsX-like permease family SSA_1590 PF00440 Bacterial regulatory proteins, tetR family SSA_1591 PF03577 Peptidase family C69 SSA_1593 PF03577 Peptidase family C69 SSA_1594 PF01431 Peptidase family M13 SSA_1594 PF05649 Peptidase family M13 SSA_1595 PF03848 Tellurite resistance protein TehB SSA_1595 PF09313 Domain of unknown function (DUF1971) SSA_1601 PF01668 SmpB protein SSA_1602 PF00773 RNB domain SSA_1602 PF08206 Ribonuclease B OB domain SSA_1602 PF17876 Cold shock domain SSA_1602 PF00575 S1 RNA binding domain SSA_1605 PF00083 Sugar (and other) transporter SSA_1605 PF07690 Major Facilitator Superfamily SSA_1606 PF01121 Dephospho-CoA kinase SSA_1607 PF06827 Zinc finger found in FPG and IleRS SSA_1607 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SSA_1607 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SSA_1608 PF02545 Maf-like protein SSA_1608 PF00293 NUDIX domain SSA_1610 PF12728 Helix-turn-helix domain SSA_1610 PF02661 Fic/DOC family SSA_1611 PF01926 50S ribosome-binding GTPase SSA_1611 PF07650 KH domain SSA_1612 PF01219 Prokaryotic diacylglycerol kinase SSA_1613 PF02130 Uncharacterized protein family UPF0054 SSA_1614 PF13302 Acetyltransferase (GNAT) domain SSA_1615 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SSA_1615 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SSA_1616 PF02562 PhoH-like protein SSA_1617 PF06855 YozE SAM-like fold SSA_1618 PF17783 CvfB-like winged helix domain SSA_1618 PF13509 S1 domain SSA_1619 PF01765 Ribosome recycling factor SSA_1620 PF00696 Amino acid kinase family SSA_1621 PF13520 Amino acid permease SSA_1622 PF00687 Ribosomal protein L1p/L10e family SSA_1623 PF03946 Ribosomal protein L11, N-terminal domain SSA_1623 PF00298 Ribosomal protein L11, RNA binding domain SSA_1625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SSA_1626 PF17854 FtsK alpha domain SSA_1626 PF09397 Ftsk gamma domain SSA_1626 PF01580 FtsK/SpoIIIE family SSA_1627 PF04024 PspC domain SSA_1628 PF00293 NUDIX domain SSA_1629 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SSA_1636 PF12848 ABC transporter SSA_1636 PF00005 ABC transporter SSA_1639 PF01048 Phosphorylase superfamily SSA_1641 PF00293 NUDIX domain SSA_1642 PF00132 Bacterial transferase hexapeptide (six repeats) SSA_1642 PF12804 MobA-like NTP transferase domain SSA_1642 PF14602 Hexapeptide repeat of succinyl-transferase SSA_1656 PF03572 Peptidase family S41 SSA_1658 PF13520 Amino acid permease SSA_1659 PF02687 FtsX-like permease family SSA_1660 PF00005 ABC transporter SSA_1662 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SSA_1663 PF17961 Bacterial Ig domain SSA_1663 PF04650 YSIRK type signal peptide SSA_1663 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SSA_1663 PF00746 LPXTG cell wall anchor motif SSA_1664 PF01209 ubiE/COQ5 methyltransferase family SSA_1666 PF10425 C-terminus of bacterial fibrinogen-binding adhesin SSA_1666 PF00746 LPXTG cell wall anchor motif SSA_1666 PF17961 Bacterial Ig domain SSA_1666 PF04650 YSIRK type signal peptide SSA_1670 PF00440 Bacterial regulatory proteins, tetR family SSA_1676 PF04397 LytTr DNA-binding domain SSA_1676 PF00072 Response regulator receiver domain SSA_1679 PF13732 Domain of unknown function (DUF4162) SSA_1679 PF00005 ABC transporter SSA_1680 PF02687 FtsX-like permease family SSA_1681 PF00005 ABC transporter SSA_1684 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1685 PF00486 Transcriptional regulatory protein, C terminal SSA_1685 PF00072 Response regulator receiver domain SSA_1687 PF00970 Oxidoreductase FAD-binding domain SSA_1687 PF00111 2Fe-2S iron-sulfur cluster binding domain SSA_1687 PF00175 Oxidoreductase NAD-binding domain SSA_1691 PF13443 Cro/C1-type HTH DNA-binding domain SSA_1692 PF00232 Glycosyl hydrolase family 1 SSA_1693 PF02378 Phosphotransferase system, EIIC SSA_1693 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SSA_1694 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SSA_1695 PF03123 CAT RNA binding domain SSA_1695 PF00874 PRD domain SSA_1696 PF01791 DeoC/LacD family aldolase SSA_1697 PF00294 pfkB family carbohydrate kinase SSA_1698 PF02502 Ribose/Galactose Isomerase SSA_1699 PF02502 Ribose/Galactose Isomerase SSA_1701 PF08220 DeoR-like helix-turn-helix domain SSA_1701 PF00455 DeoR C terminal sensor domain SSA_1703 PF09334 tRNA synthetases class I (M) SSA_1703 PF01588 Putative tRNA binding domain SSA_1706 PF03372 Endonuclease/Exonuclease/phosphatase family SSA_1710 PF01381 Helix-turn-helix SSA_1711 PF10576 Iron-sulfur binding domain of endonuclease III SSA_1711 PF00730 HhH-GPD superfamily base excision DNA repair protein SSA_1711 PF00633 Helix-hairpin-helix motif SSA_1712 PF03960 ArsC family SSA_1713 PF01842 ACT domain SSA_1713 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SSA_1713 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SSA_1715 PF00266 Aminotransferase class-V SSA_1716 PF04556 DpnII restriction endonuclease SSA_1717 PF01555 DNA methylase SSA_1718 PF02086 D12 class N6 adenine-specific DNA methyltransferase SSA_1719 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SSA_1720 PF06156 Initiation control protein YabA SSA_1721 PF09115 DNA polymerase III, delta subunit, C terminal SSA_1722 PF02223 Thymidylate kinase SSA_1723 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SSA_1723 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SSA_1724 PF00571 CBS domain SSA_1725 PF00005 ABC transporter SSA_1726 PF12399 Branched-chain amino acid ATP-binding cassette transporter SSA_1726 PF00005 ABC transporter SSA_1727 PF11862 Domain of unknown function (DUF3382) SSA_1727 PF02653 Branched-chain amino acid transport system / permease component SSA_1728 PF02653 Branched-chain amino acid transport system / permease component SSA_1729 PF13458 Periplasmic binding protein SSA_1730 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) SSA_1731 PF00574 Clp protease SSA_1734 PF00689 Cation transporting ATPase, C-terminus SSA_1734 PF00690 Cation transporter/ATPase, N-terminus SSA_1736 PF00155 Aminotransferase class I and II SSA_1737 PF01053 Cys/Met metabolism PLP-dependent enzyme SSA_1738 PF01943 Polysaccharide biosynthesis protein SSA_1738 PF14667 Polysaccharide biosynthesis C-terminal domain SSA_1739 PF02875 Mur ligase family, glutamate ligase domain SSA_1739 PF08245 Mur ligase middle domain SSA_1741 PF00005 ABC transporter SSA_1742 PF01497 Periplasmic binding protein SSA_1743 PF01032 FecCD transport family SSA_1744 PF01032 FecCD transport family SSA_1745 PF05532 CsbD-like SSA_1748 PF02833 DHHA2 domain SSA_1748 PF01368 DHH family SSA_1749 PF04055 Radical SAM superfamily SSA_1751 PF16657 Maltogenic Amylase, C-terminal domain SSA_1751 PF00128 Alpha amylase, catalytic domain SSA_1752 PF00367 phosphotransferase system, EIIB SSA_1752 PF02378 Phosphotransferase system, EIIC SSA_1753 PF00392 Bacterial regulatory proteins, gntR family SSA_1753 PF07702 UTRA domain SSA_1761 PF01595 Cyclin M transmembrane N-terminal domain SSA_1761 PF00571 CBS domain SSA_1761 PF03471 Transporter associated domain SSA_1762 PF01594 AI-2E family transporter SSA_1763 PF00005 ABC transporter SSA_1765 PF08241 Methyltransferase domain SSA_1767 PF00005 ABC transporter SSA_1768 PF00440 Bacterial regulatory proteins, tetR family SSA_1768 PF17932 Tetracyclin repressor-like, C-terminal domain SSA_1769 PF06962 Putative rRNA methylase SSA_1770 PF04055 Radical SAM superfamily SSA_1770 PF16199 Radical_SAM C-terminal domain SSA_1772 PF01569 PAP2 superfamily SSA_1773 PF12822 ECF transporter, substrate-specific component SSA_1774 PF00588 SpoU rRNA Methylase family SSA_1775 PF02254 TrkA-N domain SSA_1775 PF02080 TrkA-C domain SSA_1776 PF02386 Cation transport protein SSA_1777 PF00849 RNA pseudouridylate synthase SSA_1777 PF01479 S4 domain SSA_1778 PF04079 Segregation and condensation complex subunit ScpB SSA_1779 PF02616 Segregation and condensation protein ScpA SSA_1780 PF00589 Phage integrase family SSA_1780 PF02899 Phage integrase, N-terminal SAM-like domain SSA_1783 PF01725 Ham1 family SSA_1784 PF01177 Asp/Glu/Hydantoin racemase SSA_1786 PF03672 Uncharacterised protein family (UPF0154) SSA_1787 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SSA_1787 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SSA_1788 PF01027 Inhibitor of apoptosis-promoting Bax1 SSA_1790 PF00588 SpoU rRNA Methylase family SSA_1790 PF08032 RNA 2'-O ribose methyltransferase substrate binding SSA_1791 PF00708 Acylphosphatase SSA_1792 PF02096 60Kd inner membrane protein SSA_1793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1793 PF00512 His Kinase A (phospho-acceptor) domain SSA_1794 PF00072 Response regulator receiver domain SSA_1794 PF00486 Transcriptional regulatory protein, C terminal SSA_1795 PF04607 Region found in RelA / SpoT proteins SSA_1796 PF01272 Transcription elongation factor, GreA/GreB, C-term SSA_1796 PF03449 Transcription elongation factor, N-terminal SSA_1797 PF02618 YceG-like family SSA_1800 PF08245 Mur ligase middle domain SSA_1800 PF02875 Mur ligase family, glutamate ligase domain SSA_1800 PF01225 Mur ligase family, catalytic domain SSA_1802 PF12419 SNF2 Helicase protein SSA_1802 PF00271 Helicase conserved C-terminal domain SSA_1802 PF00176 SNF2 family N-terminal domain SSA_1803 PF01926 50S ribosome-binding GTPase SSA_1803 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SSA_1804 PF00881 Nitroreductase family SSA_1805 PF01695 IstB-like ATP binding protein SSA_1805 PF07319 Primosomal protein DnaI N-terminus SSA_1807 PF03477 ATP cone domain SSA_1808 PF03372 Endonuclease/Exonuclease/phosphatase family SSA_1809 PF02378 Phosphotransferase system, EIIC SSA_1809 PF00367 phosphotransferase system, EIIB SSA_1809 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SSA_1810 PF00486 Transcriptional regulatory protein, C terminal SSA_1810 PF00072 Response regulator receiver domain SSA_1811 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SSA_1811 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SSA_1812 PF00145 C-5 cytosine-specific DNA methylase SSA_1818 PF04480 Protein of unknown function (DUF559) SSA_1818 PF03852 DNA mismatch endonuclease Vsr SSA_1819 PF10458 Valyl tRNA synthetase tRNA binding arm SSA_1819 PF00133 tRNA synthetases class I (I, L, M and V) SSA_1819 PF08264 Anticodon-binding domain of tRNA SSA_1821 PF13673 Acetyltransferase (GNAT) domain SSA_1821 PF13302 Acetyltransferase (GNAT) domain SSA_1821 PF03352 Methyladenine glycosylase SSA_1821 PF00958 GMP synthase C terminal domain SSA_1821 PF00117 Glutamine amidotransferase class-I SSA_1826 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SSA_1826 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SSA_1827 PF01266 FAD dependent oxidoreductase SSA_1827 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SSA_1828 PF00230 Major intrinsic protein SSA_1829 PF01938 TRAM domain SSA_1829 PF05958 tRNA (Uracil-5-)-methyltransferase SSA_1831 PF02631 RecX family SSA_1832 PF04167 Protein of unknown function (DUF402) SSA_1834 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SSA_1834 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SSA_1836 PF00271 Helicase conserved C-terminal domain SSA_1836 PF04851 Type III restriction enzyme, res subunit SSA_1837 PF01205 Uncharacterized protein family UPF0029 SSA_1837 PF09186 Domain of unknown function (DUF1949) SSA_1839 PF00291 Pyridoxal-phosphate dependent enzyme SSA_1840 PF01138 3' exoribonuclease family, domain 1 SSA_1840 PF03725 3' exoribonuclease family, domain 2 SSA_1840 PF00575 S1 RNA binding domain SSA_1840 PF00013 KH domain SSA_1840 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SSA_1841 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SSA_1842 PF00072 Response regulator receiver domain SSA_1842 PF00196 Bacterial regulatory proteins, luxR family SSA_1843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1843 PF07730 Histidine kinase SSA_1845 PF03793 PASTA domain SSA_1845 PF00069 Protein kinase domain SSA_1847 PF01189 16S rRNA methyltransferase RsmB/F SSA_1847 PF01029 NusB family SSA_1848 PF02911 Formyl transferase, C-terminal domain SSA_1848 PF00551 Formyl transferase SSA_1849 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SSA_1849 PF18074 Primosomal protein N C-terminal domain SSA_1849 PF00271 Helicase conserved C-terminal domain SSA_1849 PF04851 Type III restriction enzyme, res subunit SSA_1849 PF17764 3′ DNA-binding domain (3′BD) SSA_1850 PF01192 RNA polymerase Rpb6 SSA_1851 PF00625 Guanylate kinase SSA_1852 PF00013 KH domain SSA_1852 PF01966 HD domain SSA_1852 PF12072 Domain of unknown function (DUF3552) SSA_1853 PF02664 S-Ribosylhomocysteinase (LuxS) SSA_1854 PF18041 MapZ extracellular domain 1 SSA_1854 PF18708 MapZ extracellular C-terminal domain 2 SSA_1855 PF01170 Putative RNA methylase family UPF0020 SSA_1855 PF02926 THUMP domain SSA_1857 PF05103 DivIVA protein SSA_1858 PF06908 YspA SLOG family SSA_1859 PF03838 Recombination protein U SSA_1860 PF00912 Transglycosylase SSA_1860 PF00905 Penicillin binding protein transpeptidase domain SSA_1861 PF03051 Peptidase C1-like family SSA_1862 PF13302 Acetyltransferase (GNAT) domain SSA_1863 PF02540 NAD synthase SSA_1864 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain SSA_1864 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SSA_1864 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SSA_1865 PF07992 Pyridine nucleotide-disulphide oxidoreductase SSA_1867 PF00005 ABC transporter SSA_1868 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1869 PF00271 Helicase conserved C-terminal domain SSA_1869 PF00270 DEAD/DEAH box helicase SSA_1870 PF00953 Glycosyl transferase family 4 SSA_1870 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SSA_1871 PF03793 PASTA domain SSA_1871 PF03717 Penicillin-binding Protein dimerisation domain SSA_1871 PF00905 Penicillin binding protein transpeptidase domain SSA_1873 PF01795 MraW methylase family SSA_1874 PF01381 Helix-turn-helix SSA_1878 PF05979 Bacterial protein of unknown function (DUF896) SSA_1879 PF05746 DALR anticodon binding domain SSA_1879 PF02092 Glycyl-tRNA synthetase beta subunit SSA_1880 PF02091 Glycyl-tRNA synthetase alpha subunit SSA_1882 PF06280 Fn3-like domain SSA_1882 PF00082 Subtilase family SSA_1882 PF02225 PA domain SSA_1891 PF00248 Aldo/keto reductase family SSA_1893 PF01979 Amidohydrolase family SSA_1895 PF02033 Ribosome-binding factor A SSA_1896 PF11987 Translation-initiation factor 2 SSA_1896 PF04760 Translation initiation factor IF-2, N-terminal region SSA_1896 PF00009 Elongation factor Tu GTP binding domain SSA_1897 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SSA_1899 PF04296 Protein of unknown function (DUF448) SSA_1900 PF00575 S1 RNA binding domain SSA_1900 PF13184 NusA-like KH domain SSA_1900 PF08529 NusA N-terminal domain SSA_1901 PF17384 RimP C-terminal SH3 domain SSA_1901 PF02576 RimP N-terminal domain SSA_1902 PF02390 Putative methyltransferase SSA_1905 PF00005 ABC transporter SSA_1906 PF01230 HIT domain SSA_1909 PF03816 Cell envelope-related transcriptional attenuator domain SSA_1910 PF13302 Acetyltransferase (GNAT) domain SSA_1911 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SSA_1913 PF00860 Permease family SSA_1917 PF08240 Alcohol dehydrogenase GroES-like domain SSA_1917 PF00107 Zinc-binding dehydrogenase SSA_1918 PF03830 PTS system sorbose subfamily IIB component SSA_1918 PF03610 PTS system fructose IIA component SSA_1919 PF03609 PTS system sorbose-specific iic component SSA_1920 PF03613 PTS system mannose/fructose/sorbose family IID component SSA_1924 PF00440 Bacterial regulatory proteins, tetR family SSA_1925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SSA_1925 PF02403 Seryl-tRNA synthetase N-terminal domain SSA_1930 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SSA_1931 PF17848 Acetyl-coA carboxylase zinc finger domain SSA_1931 PF01039 Carboxyl transferase domain SSA_1932 PF02785 Biotin carboxylase C-terminal domain SSA_1932 PF00289 Biotin carboxylase, N-terminal domain SSA_1932 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SSA_1933 PF07977 FabA-like domain SSA_1934 PF00364 Biotin-requiring enzyme SSA_1935 PF02801 Beta-ketoacyl synthase, C-terminal domain SSA_1935 PF00109 Beta-ketoacyl synthase, N-terminal domain SSA_1937 PF00698 Acyl transferase domain SSA_1938 PF03060 Nitronate monooxygenase SSA_1939 PF00550 Phosphopantetheine attachment site SSA_1940 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SSA_1940 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SSA_1941 PF01047 MarR family SSA_1942 PF00378 Enoyl-CoA hydratase/isomerase SSA_1943 PF13840 ACT domain SSA_1943 PF00696 Amino acid kinase family SSA_1944 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SSA_1944 PF00005 ABC transporter SSA_1945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SSA_1945 PF00005 ABC transporter SSA_1946 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1946 PF12911 N-terminal TM domain of oligopeptide transport permease C SSA_1947 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1948 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SSA_1949 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SSA_1950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SSA_1951 PF00768 D-alanyl-D-alanine carboxypeptidase SSA_1951 PF07943 Penicillin-binding protein 5, C-terminal domain SSA_1952 PF01458 Uncharacterized protein family (UPF0051) SSA_1953 PF01592 NifU-like N terminal domain SSA_1954 PF00266 Aminotransferase class-V SSA_1955 PF01458 Uncharacterized protein family (UPF0051) SSA_1956 PF00005 ABC transporter SSA_1957 PF00953 Glycosyl transferase family 4 SSA_1958 PF05389 Negative regulator of genetic competence (MecA) SSA_1959 PF02673 Bacitracin resistance protein BacA SSA_1961 PF00528 Binding-protein-dependent transport system inner membrane component SSA_1962 PF00005 ABC transporter SSA_1967 PF00585 C-terminal regulatory domain of Threonine dehydratase SSA_1967 PF00291 Pyridoxal-phosphate dependent enzyme SSA_1968 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SSA_1968 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SSA_1969 PF10369 Small subunit of acetolactate synthase SSA_1969 PF01842 ACT domain SSA_1970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SSA_1970 PF00205 Thiamine pyrophosphate enzyme, central domain SSA_1970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SSA_1972 PF00072 Response regulator receiver domain SSA_1972 PF00196 Bacterial regulatory proteins, luxR family SSA_1973 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSA_1973 PF07730 Histidine kinase SSA_1975 PF00005 ABC transporter SSA_1978 PF02734 DAK2 domain SSA_1978 PF13684 Dihydroxyacetone kinase family SSA_1979 PF03780 Asp23 family, cell envelope-related function SSA_1980 PF00830 Ribosomal L28 family SSA_1989 PF00005 ABC transporter SSA_1990 PF01297 Zinc-uptake complex component A periplasmic SSA_1990 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SSA_1992 PF01116 Fructose-bisphosphate aldolase class-II SSA_1994 PF06418 CTP synthase N-terminus SSA_1994 PF00117 Glutamine amidotransferase class-I SSA_1996 PF05066 HB1, ASXL, restriction endonuclease HTH domain SSA_1998 PF05697 Bacterial trigger factor protein (TF) SSA_1998 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SSA_1998 PF05698 Bacterial trigger factor protein (TF) C-terminus SSA_1999 PF04260 Protein of unknown function (DUF436) SSA_2000 PF07155 ECF-type riboflavin transporter, S component SSA_2001 PF08543 Phosphomethylpyrimidine kinase SSA_2002 PF01416 tRNA pseudouridine synthase SSA_2004 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region SSA_2004 PF00746 LPXTG cell wall anchor motif SSA_2004 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region SSA_2005 PF00226 DnaJ domain SSA_2005 PF01556 DnaJ C terminal domain SSA_2005 PF00684 DnaJ central domain SSA_2007 PF00012 Hsp70 protein SSA_2008 PF01025 GrpE SSA_2009 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding SSA_2009 PF01628 HrcA protein C terminal domain SSA_2011 PF00005 ABC transporter SSA_2014 PF02557 D-alanyl-D-alanine carboxypeptidase SSA_2015 PF00300 Histidine phosphatase superfamily (branch 1) SSA_2016 PF00300 Histidine phosphatase superfamily (branch 1) SSA_2018 PF05167 Uncharacterised ACR (DUF711) SSA_2022 PF13411 MerR HTH family regulatory protein SSA_2022 PF06445 GyrI-like small molecule binding domain SSA_2023 PF02368 Bacterial Ig-like domain (group 2) SSA_2023 PF08244 Glycosyl hydrolases family 32 C terminal SSA_2023 PF00251 Glycosyl hydrolases family 32 N-terminal domain SSA_2023 PF02210 Laminin G domain SSA_2025 PF16745 RsgA N-terminal domain SSA_2025 PF03193 RsgA GTPase SSA_2027 PF00403 Heavy-metal-associated domain SSA_2029 PF00872 Transposase, Mutator family SSA_2030 PF00781 Diacylglycerol kinase catalytic domain SSA_2033 PF00380 Ribosomal protein S9/S16 SSA_2034 PF00572 Ribosomal protein L13 SSA_2035 PF02645 Uncharacterised protein, DegV family COG1307 SSA_2036 PF05991 YacP-like NYN domain SSA_2037 PF08032 RNA 2'-O ribose methyltransferase substrate binding SSA_2037 PF00588 SpoU rRNA Methylase family SSA_2039 PF13520 Amino acid permease SSA_2040 PF17912 MalK OB fold domain SSA_2040 PF00005 ABC transporter SSA_2040 PF03459 TOBE domain SSA_2041 PF13556 PucR C-terminal helix-turn-helix domain SSA_2042 PF00636 Ribonuclease III domain SSA_2044 PF09190 DALR domain SSA_2044 PF01406 tRNA synthetases class I (C) catalytic domain SSA_2048 PF06426 Serine acetyltransferase, N-terminal SSA_2048 PF00132 Bacterial transferase hexapeptide (six repeats) SSA_2049 PF00575 S1 RNA binding domain SSA_2049 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SSA_2049 PF00013 KH domain SSA_2049 PF03725 3' exoribonuclease family, domain 2 SSA_2049 PF01138 3' exoribonuclease family, domain 1 SSA_2050 PF07690 Major Facilitator Superfamily SSA_2051 PF08439 Oligopeptidase F SSA_2051 PF01432 Peptidase family M3 SSA_2052 PF00085 Thioredoxin SSA_2056 PF00561 alpha/beta hydrolase fold SSA_2058 PF00312 Ribosomal protein S15 SSA_2059 PF01479 S4 domain SSA_2059 PF00849 RNA pseudouridylate synthase SSA_2061 PF01327 Polypeptide deformylase SSA_2063 PF02073 Thermophilic metalloprotease (M29) SSA_2066 PF11490 DNA polymerase III polC-type N-terminus II SSA_2066 PF00929 Exonuclease SSA_2066 PF02811 PHP domain SSA_2066 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SSA_2066 PF14480 DNA polymerase III polC-type N-terminus I SSA_2066 PF07733 Bacterial DNA polymerase III alpha NTPase domain SSA_2068 PF08000 Bacterial PH domain SSA_2069 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SSA_2069 PF04073 Aminoacyl-tRNA editing domain SSA_2069 PF03129 Anticodon binding domain SSA_2070 PF02163 Peptidase family M50 SSA_2073 PF01255 Putative undecaprenyl diphosphate synthase SSA_2075 PF02779 Transketolase, pyrimidine binding domain SSA_2075 PF00456 Transketolase, thiamine diphosphate binding domain SSA_2075 PF02780 Transketolase, C-terminal domain SSA_2079 PF12464 Maltose acetyltransferase SSA_2079 PF14602 Hexapeptide repeat of succinyl-transferase SSA_2082 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SSA_2082 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SSA_2084 PF03611 PTS system sugar-specific permease component SSA_2085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SSA_2085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SSA_2087 PF00356 Bacterial regulatory proteins, lacI family SSA_2088 PF00596 Class II Aldolase and Adducin N-terminal domain SSA_2089 PF01261 Xylose isomerase-like TIM barrel SSA_2090 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SSA_2091 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SSA_2092 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SSA_2093 PF03611 PTS system sugar-specific permease component SSA_2096 PF07724 AAA domain (Cdc48 subfamily) SSA_2096 PF00004 ATPase family associated with various cellular activities (AAA) SSA_2096 PF17871 AAA lid domain SSA_2096 PF10431 C-terminal, D2-small domain, of ClpB protein SSA_2097 PF00005 ABC transporter SSA_2098 PF00528 Binding-protein-dependent transport system inner membrane component SSA_2099 PF00528 Binding-protein-dependent transport system inner membrane component SSA_2101 PF00497 Bacterial extracellular solute-binding proteins, family 3 SSA_2107 PF01380 SIS domain SSA_2108 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SSA_2108 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SSA_2109 PF00679 Elongation factor G C-terminus SSA_2109 PF00009 Elongation factor Tu GTP binding domain SSA_2109 PF14492 Elongation Factor G, domain II SSA_2109 PF03764 Elongation factor G, domain IV SSA_2109 PF03144 Elongation factor Tu domain 2 SSA_2110 PF00177 Ribosomal protein S7p/S5e SSA_2111 PF00164 Ribosomal protein S12/S23 SSA_2114 PF00156 Phosphoribosyl transferase domain SSA_2114 PF09182 Bacterial purine repressor, N-terminal SSA_2116 PF01336 OB-fold nucleic acid binding domain SSA_2116 PF01966 HD domain SSA_2117 PF02646 RmuC family SSA_2118 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain SSA_2118 PF04263 Thiamin pyrophosphokinase, catalytic domain SSA_2119 PF00834 Ribulose-phosphate 3 epimerase family SSA_2120 PF03193 RsgA GTPase SSA_2120 PF16745 RsgA N-terminal domain SSA_2121 PF05738 Cna protein B-type domain SSA_2121 PF17802 Prealbumin-like fold domain SSA_2121 PF05737 Collagen binding domain SSA_2123 PF00398 Ribosomal RNA adenine dimethylase SSA_2125 PF13331 Domain of unknown function (DUF4093) SSA_2126 PF01026 TatD related DNase SSA_2131 PF13443 Cro/C1-type HTH DNA-binding domain SSA_2133 PF13302 Acetyltransferase (GNAT) domain SSA_2133 PF13673 Acetyltransferase (GNAT) domain SSA_2133 PF03352 Methyladenine glycosylase SSA_2133 PF00117 Glutamine amidotransferase class-I SSA_2133 PF00958 GMP synthase C terminal domain SSA_2136 PF00468 Ribosomal protein L34 SSA_2138 PF01424 R3H domain SSA_2138 PF14804 Jag N-terminus SSA_2139 PF02096 60Kd inner membrane protein SSA_2140 PF00825 Ribonuclease P SSA_2141 PF14698 Argininosuccinate lyase C-terminal SSA_2141 PF00206 Lyase SSA_2142 PF00764 Arginosuccinate synthase SSA_2144 PF00749 tRNA synthetases class I (E and Q), catalytic domain SSA_2145 PF00756 Putative esterase SSA_2146 PF17770 Ribonuclease J C-terminal domain SSA_2146 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SSA_2146 PF00753 Metallo-beta-lactamase superfamily SSA_2147 PF05532 CsbD-like SSA_2148 PF03780 Asp23 family, cell envelope-related function SSA_2150 PF04226 Transglycosylase associated protein SSA_2151 PF05043 Mga helix-turn-helix domain SSA_2151 PF08280 M protein trans-acting positive regulator (MGA) HTH domain SSA_2151 PF08270 M protein trans-acting positive regulator (MGA) PRD domain SSA_2152 PF12558 ATP-binding cassette cobalt transporter SSA_2152 PF00005 ABC transporter SSA_2154 PF00484 Carbonic anhydrase SSA_2155 PF01987 Mitochondrial biogenesis AIM24 SSA_2156 PF01987 Mitochondrial biogenesis AIM24 SSA_2160 PF00692 dUTPase SSA_2164 PF07722 Peptidase C26 SSA_2165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SSA_2166 PF00664 ABC transporter transmembrane region SSA_2166 PF00005 ABC transporter SSA_2167 PF00005 ABC transporter SSA_2167 PF00664 ABC transporter transmembrane region SSA_2168 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SSA_2168 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SSA_2169 PF00483 Nucleotidyl transferase SSA_2171 PF01812 5-formyltetrahydrofolate cyclo-ligase family SSA_2173 PF07687 Peptidase dimerisation domain SSA_2173 PF01546 Peptidase family M20/M25/M40 SSA_2174 PF14602 Hexapeptide repeat of succinyl-transferase SSA_2174 PF00132 Bacterial transferase hexapeptide (six repeats) SSA_2174 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SSA_2183 PF00342 Phosphoglucose isomerase SSA_2184 PF14437 MafB19-like deaminase SSA_2185 PF00709 Adenylosuccinate synthetase SSA_2186 PF02655 ATP-grasp domain SSA_2186 PF18419 ATP-grasp-like domain SSA_2186 PF04262 Glutamate-cysteine ligase SSA_2189 PF03747 ADP-ribosylglycohydrolase SSA_2190 PF01430 Hsp33 protein SSA_2191 PF01207 Dihydrouridine synthase (Dus) SSA_2194 PF04973 Nicotinamide mononucleotide transporter SSA_2195 PF01467 Cytidylyltransferase-like SSA_2199 PF02861 Clp amino terminal domain, pathogenicity island component SSA_2199 PF10431 C-terminal, D2-small domain, of ClpB protein SSA_2199 PF17871 AAA lid domain SSA_2199 PF07724 AAA domain (Cdc48 subfamily) SSA_2199 PF00004 ATPase family associated with various cellular activities (AAA) SSA_2200 PF05848 CtsR N-terminal HTH domain SSA_2200 PF17727 CtsR C-terminal dimerization domain SSA_2202 PF00889 Elongation factor TS SSA_2203 PF00318 Ribosomal protein S2 SSA_2205 PF00467 KOW motif SSA_2205 PF02357 Transcription termination factor nusG SSA_2209 PF00912 Transglycosylase SSA_2209 PF00905 Penicillin binding protein transpeptidase domain SSA_2210 PF00849 RNA pseudouridylate synthase SSA_2210 PF01479 S4 domain SSA_2214 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SSA_2216 PF04991 LicD family SSA_2217 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 SSA_2217 PF00535 Glycosyl transferase family 2 SSA_2218 PF00535 Glycosyl transferase family 2 SSA_2219 PF16363 GDP-mannose 4,6 dehydratase SSA_2220 PF02397 Bacterial sugar transferase SSA_2221 PF02719 Polysaccharide biosynthesis protein SSA_2222 PF13614 AAA domain SSA_2223 PF02706 Chain length determinant protein SSA_2225 PF03816 Cell envelope-related transcriptional attenuator domain SSA_2230 PF13597 Anaerobic ribonucleoside-triphosphate reductase SSA_2230 PF03477 ATP cone domain SSA_2234 PF13091 PLD-like domain SSA_2237 PF08245 Mur ligase middle domain SSA_2237 PF02875 Mur ligase family, glutamate ligase domain SSA_2239 PF06949 Protein of unknown function (DUF1292) SSA_2240 PF03652 Holliday junction resolvase SSA_2241 PF06135 IreB regulatory phosphoprotein SSA_2244 PF03960 ArsC family SSA_2245 PF00154 recA bacterial DNA recombination protein SSA_2246 PF02464 Competence-damaged protein SSA_2246 PF00994 Probable molybdopterin binding domain SSA_2246 PF18146 Damage-inducible protein CinA KH domain SSA_2247 PF01381 Helix-turn-helix SSA_2249 PF00005 ABC transporter SSA_2253 PF03352 Methyladenine glycosylase SSA_2254 PF07499 RuvA, C-terminal domain SSA_2254 PF01330 RuvA N terminal domain SSA_2255 PF01381 Helix-turn-helix SSA_2257 PF08676 MutL C terminal dimerisation domain SSA_2257 PF01119 DNA mismatch repair protein, C-terminal domain SSA_2260 PF05192 MutS domain III SSA_2260 PF05188 MutS domain II SSA_2260 PF01624 MutS domain I SSA_2260 PF00488 MutS domain V SSA_2260 PF05190 MutS family domain IV SSA_2261 PF01316 Arginine repressor, DNA binding domain SSA_2261 PF02863 Arginine repressor, C-terminal domain SSA_2262 PF00750 tRNA synthetases class I (R) SSA_2262 PF05746 DALR anticodon binding domain SSA_2262 PF03485 Arginyl tRNA synthetase N terminal domain SSA_2263 PF07972 NrdI Flavodoxin like SSA_2265 PF00343 Carbohydrate phosphorylase SSA_2266 PF02446 4-alpha-glucanotransferase SSA_2267 PF00356 Bacterial regulatory proteins, lacI family SSA_2267 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SSA_2268 PF00128 Alpha amylase, catalytic domain SSA_2268 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SSA_2268 PF17999 Pullulanase N1-terminal domain SSA_2269 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SSA_2269 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SSA_2270 PF01336 OB-fold nucleic acid binding domain SSA_2270 PF00152 tRNA synthetases class II (D, K and N) SSA_2270 PF02938 GAD domain SSA_2277 PF01580 FtsK/SpoIIIE family SSA_2277 PF12538 DNA transporter SSA_2278 PF10140 WXG100 protein secretion system (Wss), protein YukC SSA_2283 PF06013 Proteins of 100 residues with WXG SSA_2284 PF03129 Anticodon binding domain SSA_2284 PF13393 Histidyl-tRNA synthetase SSA_2285 PF01883 Iron-sulfur cluster assembly protein SSA_2286 PF00920 Dehydratase family SSA_2287 PF01783 Ribosomal L32p protein family SSA_2289 PF01022 Bacterial regulatory protein, arsR family SSA_2295 PF00589 Phage integrase family SSA_2295 PF02899 Phage integrase, N-terminal SAM-like domain SSA_2298 PF05362 Lon protease (S16) C-terminal proteolytic domain SSA_2298 PF13180 PDZ domain SSA_2302 PF01478 Type IV leader peptidase family SSA_2302 PF06750 Bacterial Peptidase A24 N-terminal domain SSA_2316 PF00482 Type II secretion system (T2SS), protein F SSA_2317 PF00437 Type II/IV secretion system protein SSA_2318 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SSA_2318 PF00437 Type II/IV secretion system protein SSA_2321 PF01545 Cation efflux family SSA_2323 PF07690 Major Facilitator Superfamily SSA_2325 PF02245 Methylpurine-DNA glycosylase (MPG) SSA_2328 PF00455 DeoR C terminal sensor domain SSA_2328 PF08220 DeoR-like helix-turn-helix domain SSA_2331 PF04914 DltD protein SSA_2332 PF00550 Phosphopantetheine attachment site SSA_2333 PF03062 MBOAT, membrane-bound O-acyltransferase family SSA_2334 PF13193 AMP-binding enzyme C-terminal domain SSA_2334 PF00501 AMP-binding enzyme SSA_2339 PF02016 LD-carboxypeptidase N-terminal domain SSA_2339 PF17676 LD-carboxypeptidase C-terminal domain SSA_2346 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SSA_2346 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SSA_2348 PF00753 Metallo-beta-lactamase superfamily SSA_2349 PF01370 NAD dependent epimerase/dehydratase family SSA_2350 PF00163 Ribosomal protein S4/S9 N-terminal domain SSA_2350 PF01479 S4 domain SSA_2351 PF00005 ABC transporter SSA_2352 PF09084 NMT1/THI5 like SSA_2353 PF00528 Binding-protein-dependent transport system inner membrane component SSA_2356 PF03796 DnaB-like helicase C terminal domain SSA_2356 PF00772 DnaB-like helicase N terminal domain SSA_2357 PF03948 Ribosomal protein L9, C-terminal domain SSA_2357 PF01281 Ribosomal protein L9, N-terminal domain SSA_2358 PF02272 DHHA1 domain SSA_2358 PF01368 DHH family SSA_2359 PF13932 GidA associated domain SSA_2359 PF01134 Glucose inhibited division protein A SSA_2361 PF01842 ACT domain SSA_2361 PF03315 Serine dehydratase beta chain SSA_2362 PF03313 Serine dehydratase alpha chain SSA_2363 PF13419 Haloacid dehalogenase-like hydrolase SSA_2364 PF01464 Transglycosylase SLT domain SSA_2365 PF02361 Cobalt transport protein SSA_2366 PF00005 ABC transporter SSA_2367 PF00005 ABC transporter SSA_2368 PF01066 CDP-alcohol phosphatidyltransferase SSA_2370 PF00675 Insulinase (Peptidase family M16) SSA_2370 PF05193 Peptidase M16 inactive domain SSA_2371 PF05193 Peptidase M16 inactive domain SSA_2373 PF02463 RecF/RecN/SMC N terminal domain SSA_2374 PF00478 IMP dehydrogenase / GMP reductase domain SSA_2374 PF00571 CBS domain SSA_2375 PF00579 tRNA synthetases class I (W and Y) SSA_2376 PF12848 ABC transporter SSA_2376 PF00005 ABC transporter SSA_2380 PF02590 Predicted SPOUT methyltransferase SSA_2381 PF13180 PDZ domain SSA_2382 PF02195 ParB-like nuclease domain SSA_2382 PF17762 HTH domain found in ParB protein SSA_2384 PF00583 Acetyltransferase (GNAT) family SSA_2387 PF01022 Bacterial regulatory protein, arsR family SSA_2389 PF01022 Bacterial regulatory protein, arsR family SSA_2391 PF00253 Ribosomal protein S14p/S29e SSA_2392 PF00444 Ribosomal protein L36 SSA_2393 PF01381 Helix-turn-helix