locus_tag old_locus_tag gene Name start end strand product note type ID NCBI SSA_0001 SSA_0001 dnaA dnaA 214 1566 + chromosomal replication initiation protein binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself. gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0001 SSA_0002 SSA_0002 dnaN dnaN 1725 2861 + DNA polymerase III subunit beta binds the polymerase to DNA and acts as a sliding clamp gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0002 SSA_0004 SSA_0004 SSA_0004 3303 3794 - lipoprotein GC: 33.13%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.811. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0004 SSA_0005 SSA_0005 ychF ychF 3961 5076 + GTP-dependent nucleic acid-binding protein EngD translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1 gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0005 SSA_0006 SSA_0006 pth pth 5149 5718 + peptidyl-tRNA hydrolase Enables the recycling of peptidyl-tRNAs produced at termination of translation gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0006 SSA_0008 SSA_0008 trcF trcF 5711 9214 + transcription-repair coupling factor GC: 36.87%25%3B Codon Adaptation Index (CAI): 0.788. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0008 SSA_0009 SSA_0009 SSA_0009 9305 9571 + ribosome-associated heat shock protein (S4) GC: 38.58%25%3B Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0009 SSA_0010 SSA_0010 divIC divIC 9564 9932 + cell division protein DivIC GC: 38.48%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.823. Curator(s): J. Alves gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0010 SSA_0011 SSA_0011 SSA_0011 9935 10063 + hypothetical protein GC: 32.56%25%3B Codon Adaptation Index (CAI): 0.794. Curator(s): J. Alves gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0011 SSA_0012 SSA_0012 SSA_0012 10056 11339 + Beta-lactamase class A GC: 37.54%25%3B Codon Adaptation Index (CAI): 0.812. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.979)%3B Curator(s): J. Alves gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0012 SSA_0013 SSA_0013 mesJ mesJ 11336 12613 + PP family ATPase GC: 38.11%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): J. Alves gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0013 SSA_0014 SSA_0014 hpt hpt 12606 13160 + hypoxanthine guanine phosphoribosyltransferase GC: 32.79%25%3B Codon Adaptation Index (CAI): 0.846. Curator(s): J. Alves gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0014 SSA_0015 SSA_0015 ftsH ftsH 13178 15157 + membrane ATPase FtsH GC: 41.72%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.818. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.458)%3B Curator(s): J. Alves gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0015 SSA_0016 SSA_0016 comX comX 15627 16112 + ComX1%2C transcriptional regulator of competence-specific genes GC: 32.72%25%3B Codon Adaptation Index (CAI): 0.803. Curator(s): J. Alves gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0016 SSA_0017 SSA_0017 mreC mreC 22951 23766 + rod shape-determining protein MreC in some organisms this protein is a transmembrane protein while in others it is periplasmic%3B involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0017 SSA_0018 SSA_0018 mreD mreD 23768 24268 + cell-shape determining protein MreD GC: 30.74%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.765. Curator(s): J. Alves gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0018 SSA_0019 SSA_0019 pcsB pcsB 24365 25579 + secreted antigen GbpB/SagA%3B peptidoglycan hydrolase%3B PcsB protein GC: 42.63%25%3B Codon Adaptation Index (CAI): 0.794. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0019 SSA_0020 SSA_0020 prsA prsA 25704 26669 + ribose-phosphate pyrophosphokinase catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0020 SSA_0021 SSA_0021 SSA_0021 26982 27551 + hypothetical protein GC: 44.21%25%3B Codon Adaptation Index (CAI): 0.781. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0021 SSA_0022 SSA_0022 srtB srtB 27646 28488 + surface protein cell wall anchor GC: 42.94%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.795. SignalP prediction: Yes (prob. 0.991)%3B Curator(s): J. Alves gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0022 SSA_0023 SSA_0023 aspC aspC 28669 29841 + aromatic amino acid aminotransferase catalyzes the transamination of the aromatic amino acid forming a ketoacid%3B first step in aromatic amino acid degradation in lactococci gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0023 SSA_0025 SSA_0025 recO recO 29834 30607 + DNA repair protein RecO involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0025 SSA_0026 SSA_0026 plsX plsX 30613 31611 + glycerol-3-phosphate acyltransferase PlsX involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsY gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0026 SSA_0027 SSA_0027 acp acp 31614 31862 + acyl carrier protein GC: 35.34%25%3B Codon Adaptation Index (CAI): 0.87. Curator(s): J. Alves gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0027 SSA_0028 SSA_0028 purC purC 32023 32730 + phosphoribosylaminoimidazole-succinocarboxamide synthase catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0028 SSA_0030 SSA_0030 purL purL 32750 36484 + phosphoribosylformylglycinamidine synthase GC: 48.7%25%3B Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0030 SSA_0031 SSA_0031 purF purF 36579 38018 + amidophosphoribosyltransferase Catalyzes first step of the de novo purine nucleotide biosynthetic pathway gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0031 SSA_0032 SSA_0032 purM purM 38078 39100 + phosphoribosylaminoimidazole synthetase catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0032 SSA_0033 SSA_0033 purN purN 39097 39660 + phosphoribosylglycinamide formyltransferase glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0033 SSA_0034 SSA_0034 SSA_0034 39687 40451 + hypothetical protein GC: 27.84%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.693. Weakly similar to ribonuclease domain. Curator(s): J. Alves gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0034 SSA_0035 SSA_0035 purH purH 40455 42017 + bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase involved in de novo purine biosynthesis gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0035 SSA_0036 SSA_0036 SSA_0036 42140 44089 - hypothetical protein GC: 45.38%25%3B Codon Adaptation Index (CAI): 0.777. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.997)%3B Curator(s): J. Alves gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0036 SSA_0037 SSA_0037 purD purD 44412 45674 + phosphoribosylamine--glycine ligase catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0037 SSA_0039 SSA_0039 purE purE 45973 46461 + phosphoribosylaminoimidazole carboxylase catalytic subunit GC: 51.12%25%3B Codon Adaptation Index (CAI): 0.752. Curator(s): J. Alves gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0039 SSA_0040 SSA_0040 purK purK 46448 47539 + phosphoribosylaminoimidazole carboxylase ATPase subunit With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0040 SSA_0041 SSA_0041 SSA_0041 47802 48029 + hypothetical protein GC: 39.47%25%3B Codon Adaptation Index (CAI): 0.761. Curator(s): J. Alves gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0041 SSA_0042 SSA_0042 SSA_0042 48033 48731 + amino acid recemase GC: 44.06%25%3B Codon Adaptation Index (CAI): 0.766. Curator(s): J. Alves gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0042 SSA_0043 SSA_0043 SSA_0043 48941 49168 + hypothetical protein GC: 37.72%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): J. Alves gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0043 SSA_0044 SSA_0044 SSA_0044 49181 50317 + hypothetical protein GC: 29.02%25%3B Codon Adaptation Index (CAI): 0.751. Curator(s): J. Alves gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0044 SSA_0045 SSA_0045 SSA_0045 50473 51009 + hypothetical protein GC: 27%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.761. SignalP prediction: Yes (prob. 0.467)%3B Curator(s): J. Alves gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0045 SSA_0046 SSA_0046 purB purB 51034 52329 + adenylosuccinate lyase Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0046 SSA_0047 SSA_0047 SSA_0047 52374 52940 - NAD(P)H dehydrogenase (quinone) GC: 44.44%25%3B Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0047 SSA_0048 SSA_0048 SSA_0048 52937 53533 - TetR/AcrR family transcriptional regulator GC: 44.05%25%3B Codon Adaptation Index (CAI): 0.773. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0048 SSA_0049 SSA_0049 SSA_0049 53752 54741 + dihydroxyacetone kinase subunit DhaK with DhaL and DhaM forms dihydroxyacetone kinase%2C which is responsible for phosphorylating dihydroxyacetone%3B DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0049 SSA_0050 SSA_0050 SSA_0050 54752 55330 + dihydroxyacetone kinase phosphatase domain-containing protein GC: 52.5%25%3B Codon Adaptation Index (CAI): 0.739. Curator(s): J. Alves gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0050 SSA_0051 SSA_0051 SSA_0051 55330 55704 + PTS system mannnose-specific transporter subunit IIA GC: 49.07%25%3B Codon Adaptation Index (CAI): 0.718. Curator(s): J. Alves gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0051 SSA_0052 SSA_0052 SSA_0052 56032 56748 - GntR family transcriptional regulator GC: 42.4%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): J. Alves gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0052 SSA_0053 SSA_0053 SSA_0053 56888 58675 + beta-galactosidase GC: 48.1%25%3B Codon Adaptation Index (CAI): 0.764. Curator(s): J. Alves gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0053 SSA_0054 SSA_0054 SSA_0054 58672 59148 + phosphotransferase system sugar-specific EIIB component GC: 47.59%25%3B Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.764. Curator(s): J. Alves gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0054 SSA_0055 SSA_0055 SSA_0055 59174 60079 + PTS system transporter subunit IIC GC: 45.14%25%3B Transporter classification TC:4.A.6.1.2. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.767. Curator(s): J. Alves gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0055 SSA_0056 SSA_0056 SSA_0056 60066 60890 + phosphotransferase system sugar-specific EIID component GC: 42.18%25%3B Transporter classification TC:4.A.6.1.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.793. Curator(s): J. Alves gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0056 SSA_0057 SSA_0057 SSA_0057 60902 61306 + phosphotransferase system sugar-specific EII component GC: 42.72%25%3B Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.789. Curator(s): J. Alves gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0057 SSA_0060 SSA_0060 agaS agaS 61617 62795 + tagatose-6-phosphate ketose/aldose isomerase GC: 49.79%25%3B Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0060 SSA_0061 SSA_0061 SSA_0061 62810 63847 + tagatose 1%2C6-diphosphate aldolase catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase%2C encoded by lacD1 and lacD2%3B expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0061 SSA_0062 SSA_0062 galM galM 63872 64918 + aldose 1-epimerase GC: 49.28%25%3B Codon Adaptation Index (CAI): 0.779. Curator(s): J. Alves gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0062 SSA_0063 SSA_0063 ruvB ruvB 65475 66473 + Holliday junction DNA helicase RuvB promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0063 SSA_0064 SSA_0064 SSA_0064 66470 67039 + hypothetical protein GC: 45.44%25%3B Codon Adaptation Index (CAI): 0.79. Curator(s): J. Alves gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0064 SSA_0065 SSA_0065 SSA_0065 67315 67737 + low molecular weight phosphotyrosine protein phosphatase GC: 44.68%25%3B Codon Adaptation Index (CAI): 0.79. Curator(s): J. Alves gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0065 SSA_0066 SSA_0066 SSA_0066 67742 68155 + hypothetical protein GC: 44.2%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.79. Curator(s): J. Alves gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0066 SSA_0067 SSA_0067 SSA_0067 68145 69950 + acyltransferase GC: 45.96%25%3B Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0067 SSA_0068 SSA_0068 adhE adhE 70254 72908 + bifunctional acetaldehyde-CoA/alcohol dehydrogenase GC: 45.69%25%3B Codon Adaptation Index (CAI): 0.794. Curator(s): J. Alves gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0068 SSA_0069 SSA_0069 SSA_0069 73177 73857 + hypothetical protein GC: 46.55%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.723. Curator(s): J. Alves gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0069 SSA_0070 SSA_0070 axe1 axe1 73973 74974 + acetylxylan esterase GC: 43.81%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): J. Alves gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0070 SSA_0071 SSA_0071 nanE nanE 75350 76048 + N-acetylmannosamine-6-phosphate 2-epimerase Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0071 SSA_0072 SSA_0072 SSA_0072 76062 77195 + sugar ABC transporter GC: 42.5%25%3B Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.776. Curator(s): J. Alves gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0072 SSA_0073 SSA_0073 SSA_0073 77219 77671 + hypothetical protein GC: 31.13%25%3B Codon Adaptation Index (CAI): 0.778. Curator(s): J. Alves gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0073 SSA_0074 SSA_0074 SSA_0074 77689 79035 + sugar ABC transporter substrate-binding protein GC: 36.15%25%3B Transporter classification TC:3.A.1.1.21. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.807. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0074 SSA_0075 SSA_0075 SSA_0075 79103 79987 + sugar ABC transporter permease GC: 37.97%25%3B Transporter classification TC:3.A.1.1.19. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.772. SignalP prediction: Yes (prob. 0.555)%3B Curator(s): J. Alves gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0075 SSA_0076 SSA_0076 SSA_0076 79987 80820 + sugar ABC transporter permease GC: 36.81%25%3B Transporter classification TC:3.A.1.1.17. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.735. Curator(s): J. Alves gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0076 SSA_0077 SSA_0077 SSA_0077 80878 81981 + oxidoreductase GC: 39.4%25%3B Codon Adaptation Index (CAI): 0.816. Curator(s): J. Alves gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0077 SSA_0078 SSA_0078 SSA_0078 82044 82961 + N-acetylneuraminate lyase GC: 46.51%25%3B Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0078 SSA_0079 SSA_0079 glk glk 82995 83879 + ROK family protein GC: 46.67%25%3B Codon Adaptation Index (CAI): 0.804. Curator(s): J. Alves gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0079 SSA_0080 SSA_0080 blpT blpT 83925 84254 + superfamily I DNA/RNA helicase GC: 40%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0080 SSA_0081 SSA_0081 SSA_0081 84310 85161 - RpiR family transcriptional regulator GC: 42.72%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.765. Curator(s): J. Alves gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0081 SSA_0083 SSA_0083 SSA_0083 85577 85900 + hypothetical protein GC: 49.07%25%3B Codon Adaptation Index (CAI): 0.75. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0083 SSA_0085 SSA_0085 ntpI ntpI 85890 87845 + V-type ATP synthase subunit I Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0085 SSA_0086 SSA_0086 ntpK ntpK 87979 88458 + V-type ATP synthase subunit K produces ATP from ADP in the presence of a proton gradient across the membrane%3B the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0086 SSA_0087 SSA_0087 ntpE ntpE 88469 89059 + V-type sodium ATPase subunit E GC: 49.75%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): J. Alves gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0087 SSA_0088 SSA_0088 ntpC ntpC 89070 90083 + V-type sodium ATPase subunit C GC: 50%25%3B Transporter classification TC:3.A.2.2.2. Codon Adaptation Index (CAI): 0.77. Curator(s): J. Alves gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0088 SSA_0089 SSA_0089 ntpG ntpG 90070 90390 + V-type ATP synthase subunit F produces ATP from ADP in the presence of a proton gradient across the membrane%3B the F subunit is part of the catalytic core of the ATP synthase complex gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0089 SSA_0090 SSA_0090 SSA_0090 90398 91093 + acetyltransferase GC: 48.85%25%3B Codon Adaptation Index (CAI): 0.754. Curator(s): J. Alves gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0090 SSA_0091 SSA_0091 ntpA ntpA 91177 93048 + V-type ATP synthase subunit A produces ATP from ADP in the presence of a proton gradient across the membrane%3B the A subunit is part of the catalytic core of the ATP synthase complex gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0091 SSA_0092 SSA_0092 ntpB ntpB 93035 94429 + V-type ATP synthase subunit B produces ATP from ADP in the presence of a proton gradient across the membrane%3B the B subunit is part of the catalytic core of the ATP synthase complex gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0092 SSA_0093 SSA_0093 ntpD ntpD 94426 95049 + V-type ATP synthase subunit D produces ATP from ADP in the presence of a proton gradient across the membrane%3B the D subunit is part of the catalytic core of the ATP synthase complex gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0093 SSA_0094 SSA_0094 SSA_0094 95485 96582 + cell wall metabolism%2C LysM type protein GC: 45.81%25%3B Codon Adaptation Index (CAI): 0.791. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0094 SSA_0095 SSA_0095 thrC thrC 96695 98179 + threonine synthase catalyzes the formation of L-threonine from O-phospho-L-homoserine gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0095 SSA_0097 SSA_0097 norN norN 98288 99565 + MATE family transporter GC: 51.64%25%3B Transporter classification TC:2.A.66.1.10. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.747. Curator(s): J. Alves gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0097 SSA_0098 SSA_0098 SSA_0098 99562 100176 + HAD superfamily hydrolase GC: 45.85%25%3B Codon Adaptation Index (CAI): 0.744. Curator(s): J. Alves gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0098 SSA_0099 SSA_0099 SSA_0099 100224 100709 - hypothetical protein GC: 35.39%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.753. Curator(s): M. Serrano gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0099 SSA_0100 SSA_0100 polA polA 100820 103462 + DNA polymerase I has 3'-5' exonuclease%2C 5'-3' exonuclease and 5'-3'polymerase activities%2C primarily functions to fill gaps during DNA replication and repair gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0100 SSA_0101 SSA_0101 SSA_0101 103736 104173 + hypothetical protein GC: 48.17%25%3B Codon Adaptation Index (CAI): 0.81. Curator(s): M. Serrano gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0101 SSA_0102 SSA_0102 SSA_0102 104175 104687 + hypothetical protein GC: 46.78%25%3B Codon Adaptation Index (CAI): 0.758. Curator(s): M. Serrano gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0102 SSA_0103 SSA_0103 SSA_0103 104720 105580 - hypothetical protein GC: 42.28%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.47)%3B Curator(s): M. Serrano gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0103 SSA_0104 SSA_0104 tgt tgt 105733 106875 + queuine tRNA-ribosyltransferase Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr) gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0104 SSA_0105 SSA_0105 SSA_0105 106901 107539 + uridine kinase GC: 47.26%25%3B Codon Adaptation Index (CAI): 0.723. Curator(s): M. Serrano gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0105 SSA_0106 SSA_0106 rpsJ rpsJ 107912 108220 + 30S ribosomal protein S10 NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0106 SSA_0107 SSA_0107 rplC rplC 108305 108931 + 50S ribosomal protein L3 binds directly near the 3' end of the 23S rRNA%2C where it nucleates assembly of the 50S subunit%3B essential for peptidyltransferase activity%3B mutations in this gene confer resistance to tiamulin gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0107 SSA_0108 SSA_0108 rplD rplD 108956 109579 + 50S ribosomal protein L4 L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0108 SSA_0109 SSA_0109 rplW rplW 109579 109875 + 50S ribosomal protein L23 binds third domain of 23S rRNA and protein L29%3B part of exit tunnel gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0109 SSA_0110 SSA_0110 rplB rplB 109893 110726 + 50S ribosomal protein L2 one of the primary rRNA-binding proteins%3B required for association of the 30S and 50S subunits to form the 70S ribosome%2C for tRNA binding and peptide bond formation gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0110 SSA_0111 SSA_0111 rpsS rpsS 110812 111093 + 30S ribosomal protein S19 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0111 SSA_0112 SSA_0112 rplV rplV 111105 111449 + 50S ribosomal protein L22 binds specifically to 23S rRNA during the early stages of 50S assembly%3B makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome%3B mutations in this gene result in erythromycin resistance%3B located near peptidyl-transferase center gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0112 SSA_0113 SSA_0113 rpsC rpsC 111462 112115 + 30S ribosomal protein S3 forms a complex with S10 and S14%3B binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0113 SSA_0114 SSA_0114 rplP rplP 112119 112532 + 50S ribosomal protein L16 located in the peptidyl transferase center and may be involved in peptidyl transferase activity%3B similar to archaeal L10e gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0114 SSA_0115 SSA_0115 rpmC rpmC 112542 112748 + 50S ribosomal protein L29 one of the stabilizing components for the large ribosomal subunit gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0115 SSA_0116 SSA_0116 rpsQ rpsQ 112772 113032 + 30S ribosomal protein S17 primary binding protein%3B helps mediate assembly%3B involved in translation fidelity gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0116 SSA_0117 SSA_0117 rplN rplN 113058 113426 + 50S ribosomal protein L14 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0117 SSA_0118 SSA_0118 rplX rplX 113503 113808 + 50S ribosomal protein L24 assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0118 SSA_0119 SSA_0119 rplE rplE 113832 114374 + 50S ribosomal protein L5 part of 50S and 5S/L5/L18/L25 subcomplex%3B contacts 5S rRNA and P site tRNA%3B forms a bridge to the 30S subunit in the ribosome by binding to S13 gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0119 SSA_0120 SSA_0120 rpsH rpsH 114758 115156 + 30S ribosomal protein S8 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0120 SSA_0121 SSA_0121 SSA_0121 115323 115502 + hypothetical protein GC: 34.44%25%3B Codon Adaptation Index (CAI): 0.837. Curator(s): M. Serrano gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0121 SSA_0122 SSA_0122 rplF rplF 115567 116103 + 50S ribosomal protein L6 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein%3B RNA-binding appears to be in the C-terminal domain%3B mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain%3B it has been localized to a region between the base of the L7/L12 stalk and the central protuberance gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0122 SSA_0123 SSA_0123 rplR rplR 116188 116544 + 50S ribosomal protein L18 binds 5S rRNA along with protein L5 and L25 gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0123 SSA_0124 SSA_0124 rpsE rpsE 116562 117056 + 30S ribosomal protein S5 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body%3B contacts S4 and S8%3B with S4 and S12 plays a role in translational accuracy%3B mutations in this gene result in spectinomycin resistance gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0124 SSA_0125 SSA_0125 rpmD rpmD 117070 117252 + 50S ribosomal protein L30 L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7 gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0125 SSA_0126 SSA_0126 rplO rplO 117407 117847 + 50S ribosomal protein L15 late assembly protein gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0126 SSA_0127 SSA_0127 secY secY 117860 119167 + preprotein translocase subunit SecY forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0127 SSA_0128 SSA_0128 adk adk 119341 119979 + adenylate kinase essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0128 SSA_0129 SSA_0129 infA infA 120097 120315 + translation initiation factor IF-1 stimulates the activities of the other two initiation factors%2C IF-2 and IF-3 gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0129 SSA_0130 SSA_0130 rpsM rpsM 120472 120837 + 30S ribosomal protein S13 located at the top of the head of the 30S subunit%2C it contacts several helices of the 16S rRNA%3B makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5%3B contacts P-site tRNA gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0130 SSA_0131 SSA_0131 rpsK rpsK 120857 121240 + 30S ribosomal protein S11 located on the platform of the 30S subunit%2C it bridges several disparate RNA helices of the 16S rRNA%3B forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B interacts with S7 and S18 and IF-3 gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0131 SSA_0132 SSA_0132 rpoA rpoA 121286 122224 + DNA-directed RNA polymerase subunit alpha catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0132 SSA_0133 SSA_0133 rplQ rplQ 122236 122622 + 50S ribosomal protein L17 is a component of the macrolide binding site in the peptidyl transferase center gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0133 SSA_0134 SSA_0134 mrcB mrcB 172130 174544 + membrane carboxypeptidase GC: 46.63%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.778. Curator(s): M. Serrano %2C J. Alves gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0134 SSA_0135 SSA_0135 adcR adcR 130714 131157 + multiple antibiotic resistance operon transcription repressor MarR GC: 41.44%25%3B Codon Adaptation Index (CAI): 0.796. Helix-turn-helix prediction: LysR\AraC. Curator(s): M. Serrano %2C J. Alves gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0135 SSA_0136 SSA_0136 adcC adcC 131154 131864 + zinc ABC transporter GC: 44.44%25%3B Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.809. Curator(s): M. Serrano gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0136 SSA_0137 SSA_0137 adcB adcB 131857 132663 + zinc ABC transporter permease GC: 45.23%25%3B Transporter classification TC:3.A.1.15.3. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.727. Curator(s): M. Serrano gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0137 SSA_0138 SSA_0138 adcA adcA 132673 134175 + Zn-binding lipoprotein GC: 43.58%25%3B Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.806. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.998)%3B Curator(s): M. Serrano gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0138 SSA_0139 SSA_0139 SSA_0139 134323 134766 + copper transport operon or penicillinase transcriptional repressor GC: 45.27%25%3B Codon Adaptation Index (CAI): 0.756. Curator(s): M. Serrano %2C J. Alves gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0139 SSA_0140 SSA_0140 ctpA ctpA 134766 137012 + copper-translocating P-type ATPase GC: 47.93%25%3B Transporter classification TC:3.A.3.5.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.753. LipoP prediction: SpI. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0140 SSA_0141 SSA_0141 SSA_0141 137033 137251 + copper chaperone GC: 43.84%25%3B Codon Adaptation Index (CAI): 0.758. Curator(s): M. Serrano gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0141 SSA_0142 SSA_0142 SSA_0142 137370 137549 + hypothetical protein GC: 45.56%25%3B Codon Adaptation Index (CAI): 0.721. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): M. Serrano gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0142 SSA_0143 SSA_0143 SSA_0143 137605 137940 + hypothetical protein GC: 46.13%25%3B Codon Adaptation Index (CAI): 0.83. Curator(s): M. Serrano %3B T. Kitten gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0143 SSA_0144 SSA_0144 SSA_0144 138083 138655 - TetR family transcriptional regulator GC: 38.74%25%3B Codon Adaptation Index (CAI): 0.795. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano %2C J. Alves gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0144 SSA_0145 SSA_0145 SSA_0145 138868 139470 - TetR family transcriptional regulator GC: 40.8%25%3B Codon Adaptation Index (CAI): 0.764. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano %2C J. Alves gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0145 SSA_0146 SSA_0146 SSA_0146 139826 142219 + DNA repair ATPase GC: 44.57%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.772. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Possible ATPase involved in DNA repair%2C contains Gram-positive anchor. Curator(s): M. Serrano %2C J. Alves gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0146 SSA_0148 SSA_0148 SSA_0148 142397 143527 + sugar ABC transporter ATP-binding protein GC: 47.21%25%3B Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.77. Curator(s): M. Serrano gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0148 SSA_0149 SSA_0149 SSA_0149 143714 143893 + hypothetical protein GC: 41.11%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.82. Curator(s): M. Serrano gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0149 SSA_0150 SSA_0150 SSA_0150 144076 145287 + hypothetical protein GC: 43.23%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): M. Serrano gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0150 SSA_0151 SSA_0151 SSA_0151 145494 145931 + hypothetical protein GC: 40.87%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.79. Curator(s): M. Serrano gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0151 SSA_0152 SSA_0152 SSA_0152 145939 148791 + hypothetical protein GC: 42.87%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.786. Curator(s): M. Serrano %2C J. Alves gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0152 SSA_0153 SSA_0153 SSA_0153 148817 149563 + hypothetical protein GC: 42.7%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.737. Curator(s): M. Serrano gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0153 SSA_0154 SSA_0154 SSA_0154 149976 151010 + hypothetical protein GC: 38.94%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.811. Curator(s): M. Serrano %2C J. Alves gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0154 SSA_0155 SSA_0155 SSA_0155 151101 151466 + hypothetical protein GC: 40.98%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.721. Curator(s): M. Serrano %2C J. Alves gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0155 SSA_0156 SSA_0156 SSA_0156 151466 153382 + chaperone ATPase GC: 44.5%25%3B Codon Adaptation Index (CAI): 0.78. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano %2C J. Alves gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0156 SSA_0157 SSA_0157 SSA_0157 153653 153937 + hypothetical protein GC: 44.56%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.807. LipoP prediction: SpI. Curator(s): M. Serrano gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0157 SSA_0158 SSA_0158 SSA_0158 153941 155134 + hypothetical protein GC: 42.04%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.795. Curator(s): M. Serrano %2C J. Alves gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0158 SSA_0159 SSA_0159 SSA_0159 155140 157116 + hypothetical protein GC: 40.92%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.785. Curator(s): M. Serrano %2C J. Alves gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0159 SSA_0160 SSA_0160 SSA_0160 158875 159579 + hypothetical protein GC: 40.57%25%3B Codon Adaptation Index (CAI): 0.785. Curator(s): M. Serrano %2C J. Alves gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0160 SSA_0161 SSA_0161 SSA_0161 159585 161522 + hypothetical protein GC: 43.5%25%3B Codon Adaptation Index (CAI): 0.788. Curator(s): M. Serrano %2C J. Alves gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0161 SSA_0162 SSA_0162 SSA_0162 161531 162199 + hypothetical protein GC: 41.7%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.785. SignalP prediction: Yes (prob. 0.496)%3B Curator(s): M. Serrano %2C J. Alves gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0162 SSA_0163 SSA_0163 SSA_0163 162267 162602 + hypothetical protein GC: 41.37%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.743. Curator(s): M. Serrano %2C J. Alves gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0163 SSA_0164 SSA_0164 SSA_0164 162618 164057 + hypothetical protein GC: 45.49%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.993)%3B Curator(s): M. Serrano %2C J. Alves%3B possible function in cell wall glycoprotein metabolism gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0164 SSA_0165 SSA_0165 SSA_0165 164078 164683 + hypothetical protein GC: 41.58%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.725. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): M. Serrano %2C J. Alves gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0165 SSA_0166 SSA_0166 SSA_0166 164781 165206 + hypothetical protein GC: 39.67%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.748. Curator(s): M. Serrano %2C J. Alves gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0166 SSA_0167 SSA_0167 SSA_0167 165394 166395 + hypothetical protein GC: 50.2%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.764. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): M. Serrano %2C J. Alves gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0167 SSA_0168 SSA_0168 SSA_0168 166597 167577 + hypothetical protein GC: 40.37%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): M. Serrano %2C J. Alves gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0168 SSA_0169 SSA_0169 SSA_0169 167881 168075 + hypothetical protein GC: 33.85%25%3B Codon Adaptation Index (CAI): 0.743. Curator(s): M. Serrano %2C J. Alves gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0169 SSA_0170 SSA_0170 SSA_0170 168220 168798 - hypothetical protein GC: 37.65%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): M. Serrano %2C J. Alves gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0170 SSA_0171 SSA_0171 SSA_0171 168855 169046 - Cro family transcriptional regulator GC: 37.5%25%3B Codon Adaptation Index (CAI): 0.711. Helix-turn-helix prediction: AraC. Curator(s): M. Serrano %2C J. Alves gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0171 SSA_0172 SSA_0172 SSA_0172 169280 169732 + XRE family transcriptional regulator GC: 41.5%25%3B Codon Adaptation Index (CAI): 0.745. Curator(s): M. Serrano %2C J. Alves gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0172 SSA_0173 SSA_0173 rrmA rrmA 169786 170625 - 23S rRNA m(1)G745 methyltransferase GC: 42.62%25%3B Codon Adaptation Index (CAI): 0.774. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.57)%3B Curator(s): M. Serrano gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0173 SSA_0174 SSA_0174 tyrS tyrS 170719 171978 - tyrosyl-tRNA synthetase catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0174 SSA_0175 SSA_0175 pbp1b pbp1b 172292 174544 + penicillin-binding protein 1B GC: 47.36%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.778. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.925)%3B Curator(s): M. Serrano gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0175 SSA_0176 SSA_0176 rpoB rpoB 175121 178504 + DNA-directed RNA polymerase subunit beta DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0176 SSA_0177 SSA_0177 rpoC rpoC 178545 182192 + DNA-directed RNA polymerase subunit beta' DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0177 SSA_0178 SSA_0178 epsC epsC 182956 184113 + UDP-N-acetylglucosamine 2-epimerase GC: 44.73%25%3B Codon Adaptation Index (CAI): 0.809. Curator(s): M. Serrano gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0178 SSA_0179 SSA_0179 SSA_0179 184106 184894 + hypothetical protein GC: 40.18%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.761. Curator(s): M. Serrano %2C J. Alves%3B possibly membrane-associated gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0179 SSA_0180 SSA_0180 SSA_0180 184906 185049 + hypothetical protein GC: 31.94%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.772. Curator(s): M. Serrano %2C J. Alves gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0180 SSA_0181 SSA_0181 SSA_0181 185042 186352 + glycosyl transferase family protein GC: 43.94%25%3B Transporter classification TC:9.B.32.1.3. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.79. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.585)%3B Helix-turn-helix prediction: AraC. Curator(s): M. Serrano gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0181 SSA_0182 SSA_0182 SSA_0182 186439 187467 + endoglucanase GC: 42.37%25%3B Codon Adaptation Index (CAI): 0.795. Curator(s): M. Serrano gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0182 SSA_0183 SSA_0183 SSA_0183 187786 188166 + hypothetical protein GC: 45.41%25%3B Codon Adaptation Index (CAI): 0.814. Curator(s): M. Serrano gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0183 SSA_0184 SSA_0184 comYA comYA 188296 189237 + competence protein ComYA GC: 47.24%25%3B Transporter classification TC:3.A.14.1.1. Codon Adaptation Index (CAI): 0.79. Curator(s): M. Serrano %2C J. Alves gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0184 SSA_0185 SSA_0185 comYB comYB 189197 190201 + competence protein ComYB GC: 44.18%25%3B Transporter classification TC:3.A.14.1.1. Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.788. Curator(s): M. Serrano %2C J. Alves gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0185 SSA_0186 SSA_0186 comYC comYC 190201 190518 + competence protein ComYC GC: 42.45%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.818. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.982)%3B Curator(s): M. Serrano %2C J. Alves gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0186 SSA_0187 SSA_0187 comYD comYD 190490 190912 + competence protein ComYD GC: 45.86%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.741. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): M. Serrano %2C J. Alves gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0187 SSA_0188 SSA_0188 SSA_0188 190938 191171 + hypothetical protein GC: 48.72%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): M. Serrano %2C J. Alves gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0188 SSA_0189 SSA_0189 SSA_0189 191155 191583 + competence protein ComGF GC: 46.39%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): M. Serrano %2C J. Alves gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0189 SSA_0190 SSA_0190 SSA_0190 191621 191965 + hypothetical protein GC: 47.54%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): M. Serrano %2C J. Alves gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0190 SSA_0191 SSA_0191 SSA_0191 192047 193012 + adenine-specific DNA methylase GC: 41.82%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): M. Serrano %2C J. Alves gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0191 SSA_0192 SSA_0192 ackA ackA 193049 194242 + acetate kinase AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0192 SSA_0193 SSA_0193 SSA_0193 194458 195135 + CAAX amino terminal protease family protein GC: 39.23%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.758. SignalP prediction: Yes (prob. 0.652)%3B Curator(s): M. Serrano %2C J. Alves gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0193 SSA_0195 SSA_0195 SSA_0195 195253 195891 + hypothetical protein GC: 45.54%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.762. Curator(s): M. Serrano gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0195 SSA_0197 SSA_0197 folP folP 196086 197039 + dihydropteroate synthase GC: 48.11%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): M. Serrano gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0197 SSA_0198 SSA_0198 SSA_0198 197041 198435 + dihydrofolate synthetase GC: 48.24%25%3B Codon Adaptation Index (CAI): 0.749. Curator(s): M. Serrano gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0198 SSA_0199 SSA_0199 folE folE 198416 198970 + GTP cyclohydrolase I involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0199 SSA_0200 SSA_0200 folK folK 199058 199870 + bifunctional folate synthesis protein GC: 48.59%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): M. Serrano gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0200 SSA_0201 SSA_0201 SSA_0201 199965 200672 + multidrug ABC transporter GC: 46.75%25%3B Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.74. Curator(s): M. Serrano %2C J. Alves gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0201 SSA_0202 SSA_0202 SSA_0202 200674 201462 + hypothetical protein GC: 46.51%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.752. Curator(s): P. Manque %2C J. Alves%3B possible transmembrane gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0202 SSA_0203 SSA_0203 SSA_0203 201462 202184 + hypothetical protein GC: 44.54%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.728. SignalP prediction: Yes (prob. 0.63)%3B Curator(s): P. Manque %2C J. Alves%3B possible transmembrane gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0203 SSA_0204 SSA_0204 nisR nisR 202197 202895 + nisin biosynthesis two-component response transcriptional regulator nisR GC: 44.35%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): P. Manque %2C J. Alves gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0204 SSA_0205 SSA_0205 nisK nisK 202862 203899 + sensor-receptor histidine kinase NisK GC: 42.58%25%3B Transporter classification TC:2.A.21.9.2. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.784. Curator(s): P. Manque %2C J. Alves gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0205 SSA_0206 SSA_0206 SSA_0206 204396 204560 + hypothetical protein GC: 34.55%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.817. Curator(s): P. Manque gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0206 SSA_0207 SSA_0207 SSA_0207 204570 205004 + hypothetical protein GC: 42.07%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.785. Curator(s): P. Manque gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0207 SSA_0208 SSA_0208 SSA_0208 205058 206542 - hypothetical protein GC: 46.94%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): P. Manque %2C J. Alves gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0208 SSA_0209 SSA_0209 pepA pepA 206662 207726 - glutamyl aminopeptidase GC: 52.58%25%3B Codon Adaptation Index (CAI): 0.759. Curator(s): P. Manque gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0209 SSA_0210 SSA_0210 SSA_0210 207897 208184 + hypothetical protein GC: 47.57%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.751. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): P. Manque gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0210 SSA_0211 SSA_0211 trxA2 trxA2 208181 208516 + hypothetical protein GC: 43.75%25%3B Codon Adaptation Index (CAI): 0.757. Curator(s): P. Manque gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0211 SSA_0212 SSA_0212 SSA_0212 208513 209139 + phenylalanyl-tRNA synthetase subunit beta GC: 47.85%25%3B Codon Adaptation Index (CAI): 0.802. Curator(s): P. Manque gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0212 SSA_0213 SSA_0213 SSA_0213 209638 210225 - hypothetical protein GC: 45.75%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.713. SignalP prediction: Yes (prob. 0.927)%3B Curator(s): P. Manque gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0213 SSA_0214 SSA_0214 ssb2 ssb2 210355 210750 + single-stranded DNA-binding protein binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0214 SSA_0215 SSA_0215 rbsB rbsB 211031 212017 + periplasmic sugar-binding protein (ribose porter) GC: 45.49%25%3B Transporter classification TC:3.A.1.2.1. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.762. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.516)%3B Curator(s): P. Manque %2C J. Alves gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0215 SSA_0216 SSA_0216 SSA_0216 212017 213330 + histidine kinase GC: 44.98%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. Curator(s): P. Manque gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0216 SSA_0217 SSA_0217 SSA_0217 213323 214006 + two-component response transcriptional regulator GC: 46.93%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): P. Manque %2C J. Alves gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0217 SSA_0218 SSA_0218 SSA_0218 214003 215286 + sugar ABC transporter periplasmic protein GC: 46.65%25%3B Transporter classification TC:3.A.1.1.16. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.787. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0218 SSA_0219 SSA_0219 SSA_0219 215507 215944 + PTS system sugar-specific transporter subunit IIA GC: 49.54%25%3B Transporter classification TC:4.A.6.1.4. Codon Adaptation Index (CAI): 0.79. Curator(s): P. Manque gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0219 SSA_0220 SSA_0220 SSA_0220 215988 216482 + PTS system mannose-specific transporter subunit IIB GC: 45.45%25%3B Transporter classification TC:4.A.6.1.2. Codon Adaptation Index (CAI): 0.79. Curator(s): P. Manque gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0220 SSA_0221 SSA_0221 SSA_0221 216510 217355 + PTS system mannose-specific transporter subunit IIC GC: 44.92%25%3B Transporter classification TC:4.A.6.1.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.793. SignalP prediction: Yes (prob. 0.878)%3B Curator(s): P. Manque gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0221 SSA_0222 SSA_0222 SSA_0222 217357 218193 + PTS system mannose-specific transporter subunit IID GC: 45.64%25%3B Transporter classification TC:4.A.6.1.2. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.779. Curator(s): P. Manque gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0222 SSA_0224 SSA_0224 SSA_0224 218288 218578 + hypothetical protein GC: 39.86%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.736. Curator(s): P. Manque gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0224 SSA_0225 SSA_0225 groES groES 218782 219063 + co-chaperonin GroES 10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0225 SSA_0226 SSA_0226 groEL groEL 219087 220709 + molecular chaperone GroEL 60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0226 SSA_0227 SSA_0227 SSA_0227 221177 223030 + collagen-binding surface protein GC: 43.58%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque %2C T. Kitten gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0227 SSA_0228 SSA_0228 SSA_0228 223503 223634 + hypothetical protein GC: 31.06%25%3B Codon Adaptation Index (CAI): 0.805. Curator(s): P. Manque %2C J. Alves gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0228 SSA_0229 SSA_0229 SSA_0229 223675 223773 + hypothetical protein GC: 31.31%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): P. Manque %2C J. Alves gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0229 SSA_0230 SSA_0230 SSA_0230 223902 225047 - hypothetical protein GC: 33.16%25%3B Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.75. Curator(s): P. Manque gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0230 SSA_0231 SSA_0231 SSA_0231 225853 227142 + hypothetical protein GC: 39.61%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.76. Curator(s): P. Manque gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0231 SSA_0232 SSA_0232 SSA_0232 227152 227337 + hypothetical protein GC: 33.87%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.705. SignalP prediction: Yes (prob. 0.995)%3B Curator(s): P. Manque gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0232 SSA_0233 SSA_0233 SSA_0233 227343 228239 + permease GC: 39.58%25%3B Transporter classification TC:9.B.22.1.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.709. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque %2C J. Alves gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0233 SSA_0234 SSA_0234 SSA_0234 228513 229028 - hypothetical protein GC: 37.6%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.737. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0234 SSA_0235 SSA_0235 int int 229701 230840 + integrase/recombinase%2C phage associated GC: 33.07%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): P. Manque gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0235 SSA_0236 SSA_0236 cshA cshA 231265 232533 - recombination factor protein RarA GC: 50.91%25%3B Codon Adaptation Index (CAI): 0.734. Curator(s): P. Manque gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0236 SSA_0238 SSA_0238 SSA_0238 232621 233091 + hypothetical protein GC: 45.65%25%3B Codon Adaptation Index (CAI): 0.727. Curator(s): P. Manque gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0238 SSA_0239 SSA_0239 SSA_0239 233101 233553 + 7%2C8-dihydro-8-oxoguanine-triphosphatase GC: 45.7%25%3B Codon Adaptation Index (CAI): 0.811. Curator(s): P. Manque gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0239 SSA_0240 SSA_0240 SSA_0240 233550 234020 + acetyltransferase GC: 45.65%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): P. Manque gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0240 SSA_0241 SSA_0241 prmA prmA 234161 235117 + 50S ribosomal protein L11 methyltransferase methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0241 SSA_0242 SSA_0242 SSA_0242 235118 235870 + 16S ribosomal RNA methyltransferase RsmE in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA%3B cells lacking this function can grow%2C but are outcompeted by wild-type%3B SAM-dependent m(3)U1498 methyltransferase gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0242 SSA_0243 SSA_0243 yfkN yfkN 235914 238325 - bifunctional 2'%2C3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface%3B functions during ribonucleic acid degradation%3B 2'%2C3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0243 SSA_0244 SSA_0244 SSA_0244 238838 239230 + hypothetical protein GC: 35.62%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.756. SignalP prediction: Yes (prob. 0.67)%3B Curator(s): P. Manque %2C J. Alves gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0244 SSA_0245 SSA_0245 SSA_0245 239276 239668 + hypothetical protein GC: 34.86%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.774. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.734)%3B Curator(s): P. Manque %2C J. Alves gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0245 SSA_0246 SSA_0246 SSA_0246 239843 240166 + hypothetical protein GC: 37.65%25%3B Codon Adaptation Index (CAI): 0.775. Curator(s): P. Manque %2C J. Alves gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0246 SSA_0247 SSA_0247 SSA_0247 240172 241515 + hypothetical protein GC: 39.81%25%3B Codon Adaptation Index (CAI): 0.769. Curator(s): P. Manque %2C J. Alves%3B possible lipase class 3 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0247 SSA_0248 SSA_0248 SSA_0248 241500 241904 + hypothetical protein GC: 36.3%25%3B Codon Adaptation Index (CAI): 0.754. Curator(s): P. Manque %2C J. Alves gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0248 SSA_0249 SSA_0249 SSA_0249 241891 242175 + hypothetical protein GC: 39.3%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): P. Manque %2C J. Alves gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0249 SSA_0250 SSA_0250 relA relA 242307 244526 + GTP pyrophosphokinase GC: 48.6%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): P. Manque gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0250 SSA_0251 SSA_0251 dtd dtd 244595 245038 + D-tyrosyl-tRNA(Tyr) deacylase hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0251 SSA_0252 SSA_0252 SSA_0252 245132 245929 - hypothetical protein GC: 43.36%25%3B Codon Adaptation Index (CAI): 0.753. Curator(s): P. Manque %2C J. Alves gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0252 SSA_0253 SSA_0253 SSA_0253 246429 247043 + CAAX amino terminal protease family protein GC: 39.51%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.752. Curator(s): P. Manque %2C J. Alves gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0253 SSA_0254 SSA_0254 SSA_0254 247157 247582 - hypothetical protein GC: 43.43%25%3B Codon Adaptation Index (CAI): 0.751. Curator(s): P. Manque %2C J. Alves gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0254 SSA_0255 SSA_0255 SSA_0255 247575 248036 - multiple antibiotic resistance operon transcription repressor MarR GC: 43.72%25%3B Codon Adaptation Index (CAI): 0.739. Curator(s): P. Manque %2C J. Alves gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0255 SSA_0256 SSA_0256 SSA_0256 248142 248789 - Fe/Mn-dependent transcriptional repressor ScaR GC: 46.6%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): P. Manque %2C J. Alves gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0256 SSA_0257 SSA_0257 SSA_0257 249018 251900 + N-acetylmuramidase/lysin GC: 48.35%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0257 SSA_0258 SSA_0258 SSA_0258 251985 253082 + hypothetical protein GC: 47.27%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): P. Manque gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0258 SSA_0259 SSA_0259 tpx tpx 253103 253633 - thiol peroxidase antioxidant activity%3B thioredoxin-dependent thiol peroxidase%3B forms homodimers in solution%3B shows substrate specificity to alkyl hydroperoxides%3B periplasmic protein gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0259 SSA_0260 SSA_0260 ssaB ssaB 253746 254675 - Mn/Zn ABC transporter substrate-binding protein GC: 42.37%25%3B Transporter classification TC:3.A.1.15.2. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque %2C J. Alves gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0260 SSA_0261 SSA_0261 ssaC ssaC 254695 255558 - Mn/Zn ABC transporter permease GC: 46.88%25%3B Transporter classification TC:3.A.1.15.2. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.729. Curator(s): P. Manque %2C J. Alves gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0261 SSA_0262 SSA_0262 ssaA ssaA 255545 256294 - Mn/Zn ABC transporter ATPase GC: 45.47%25%3B Transporter classification TC:3.A.1.15.2. Codon Adaptation Index (CAI): 0.783. Curator(s): P. Manque %2C J. Alves gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0262 SSA_0263 SSA_0263 pepO pepO 256414 258306 + Zinc metalloproteinase in scaA 5'region GC: 48.44%25%3B Codon Adaptation Index (CAI): 0.785. Curator(s): P. Manque gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0263 SSA_0264 SSA_0264 SSA_0264 258540 259436 + PEP phosphonomutase-like protein GC: 49.16%25%3B Codon Adaptation Index (CAI): 0.779. Curator(s): P. Manque gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0264 SSA_0265 SSA_0265 SSA_0265 259531 260067 + ORFA%2C transposon ISSsa1 GC: 38.18%25%3B Codon Adaptation Index (CAI): 0.728. Helix-turn-helix prediction: AraC. Curator(s): P. Manque gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0265 SSA_0266 SSA_0266 SSA_0266 260274 260882 + ORFB%2C transposon ISSsa1 GC: 39.74%25%3B Codon Adaptation Index (CAI): 0.767. Curator(s): P. Manque gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0266 SSA_0267 SSA_0267 SSA_0267 260963 262159 - ROK family protein GC: 46.78%25%3B Codon Adaptation Index (CAI): 0.767. Curator(s): P. Manque gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0267 SSA_0268 SSA_0268 ptcB ptcB 262364 262681 + PTS system cellobiose-specific transporter subunit IIB GC: 48.43%25%3B Transporter classification TC:4.A.3.2.2. Codon Adaptation Index (CAI): 0.765. Curator(s): P. Manque gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0268 SSA_0269 SSA_0269 SSA_0269 262690 263007 + PTS system cellobiose-specific transporter subunit IIA GC: 44.34%25%3B Transporter classification TC:4.A.3.2.2. Codon Adaptation Index (CAI): 0.8. Curator(s): P. Manque gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0269 SSA_0270 SSA_0270 SSA_0270 263013 264374 + PTS system cellobiose-specific transporter subunit IIC GC: 46.11%25%3B Transporter classification TC:4.A.3.2.2. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.774. Curator(s): P. Manque gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0270 SSA_0271 SSA_0271 SSA_0271 264375 266153 + glycosyl hydrolase family protein GC: 47.61%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): P. Manque gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0271 SSA_0272 SSA_0272 SSA_0272 266163 267092 + aldo/keto reductase GC: 48.92%25%3B Transporter classification TC:8.A.5.1.3. Codon Adaptation Index (CAI): 0.785. Possible K+ ion channel beta chain regulatory protein. Curator(s): P. Manque %2C J. Alves gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0272 SSA_0273 SSA_0273 SSA_0273 267211 268626 + hypothetical protein GC: 50.99%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.79. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0273 SSA_0274 SSA_0274 SSA_0274 268670 269647 - hypothetical protein GC: 44.99%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.765. SignalP prediction: Yes (prob. 0.515)%3B Curator(s): P. Manque gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0274 SSA_0276 SSA_0276 SSA_0276 269858 270727 + glycosyl transferase family protein GC: 47.01%25%3B Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.759. Curator(s): P. Manque gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0276 SSA_0277 SSA_0277 SSA_0277 270798 271601 - pyruvate formate-lyase 3-activating protein GC: 41.29%25%3B Codon Adaptation Index (CAI): 0.775. Curator(s): P. Manque gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0277 SSA_0278 SSA_0278 SSA_0278 271699 272442 + sugar metabolism transcriptional repressor GC: 41.4%25%3B Codon Adaptation Index (CAI): 0.792. Helix-turn-helix prediction: AraC. Curator(s): P. Manque %2C J. Alves gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0278 SSA_0279 SSA_0279 SSA_0279 272459 273430 + sugar-binding transcriptional repressor (DeoR) GC: 42.28%25%3B Codon Adaptation Index (CAI): 0.772. Helix-turn-helix prediction: AraC. Curator(s): P. Manque %2C J. Alves gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0279 SSA_0281 SSA_0281 SSA_0281 273544 274023 + hypothetical protein GC: 35%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.726. Curator(s): P. Manque gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0281 SSA_0282 SSA_0282 SSA_0282 274355 274678 + PTS system cellobiose-specific transporter subunit IIA GC: 40.43%25%3B Transporter classification TC:4.A.3.2.1. Codon Adaptation Index (CAI): 0.772. Helix-turn-helix prediction: AraC. Curator(s): P. Manque gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0282 SSA_0283 SSA_0283 SSA_0283 274699 275010 + PTS system cellobiose-specific transporter subunit IIB GC: 42.95%25%3B Transporter classification TC:4.A.3.2.3. Codon Adaptation Index (CAI): 0.807. SignalP prediction: Yes (prob. 0.996)%3B Curator(s): P. Manque gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0283 SSA_0284 SSA_0284 ptcC ptcC 275028 276329 + PTS system cellobiose-specific transporter subunit IIC GC: 45.16%25%3B Transporter classification TC:4.A.3.2.2. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.776. Curator(s): P. Manque gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0284 SSA_0285 SSA_0285 SSA_0285 276498 278939 + formate acetyltransferase 3 GC: 44.84%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): P. Manque gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0285 SSA_0286 SSA_0286 SSA_0286 278954 279622 + fructose-6-phosphate aldolase similar to transaldolase from Escherichia coli%3B many organisms have multiple copies gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0286 SSA_0287 SSA_0287 gldA gldA 279668 280762 + glycerol dehydrogenase forms dimers and octamers%3B involved in conversion of glycerol to dihydroxy-acetone gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0287 SSA_0288 SSA_0288 SSA_0288 280830 281393 - hypothetical protein GC: 37.06%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.727. Curator(s): P. Manque gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0288 SSA_0289 SSA_0289 leuS leuS 281546 284059 + leucyl-tRNA synthetase leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0289 SSA_0290 SSA_0290 SSA_0290 284174 285319 - hypothetical protein GC: 40.84%25%3B Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.756. Curator(s): P. Manque gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0290 SSA_0291 SSA_0291 SSA_0291 285502 286329 + short chain dehydrogenase GC: 42.63%25%3B Codon Adaptation Index (CAI): 0.829. LipoP prediction: SpI. Curator(s): P. Manque gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0291 SSA_0292 SSA_0292 SSA_0292 286348 287322 + AraC family transcriptional regulator GC: 43.59%25%3B Codon Adaptation Index (CAI): 0.77. Helix-turn-helix prediction: AraC. Curator(s): P. Manque %2C J. Alves gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0292 SSA_0293 SSA_0293 SSA_0293 287446 287703 - hypothetical protein GC: 39.53%25%3B Codon Adaptation Index (CAI): 0.752. Curator(s): P. Manque gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0293 SSA_0294 SSA_0294 SSA_0294 287862 287966 - hypothetical protein GC: 36.19%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): P. Manque gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0294 SSA_0295 SSA_0295 mleR mleR 288116 288991 - LysR family transcriptional regulator GC: 38.81%25%3B Codon Adaptation Index (CAI): 0.742. Helix-turn-helix prediction: LysR. Similar to malolactic fermentation system activator. Curator(s): P. Manque %2C J. Alves gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0295 SSA_0296 SSA_0296 SSA_0296 289103 289453 - XRE family transcriptional regulator GC: 33.9%25%3B Codon Adaptation Index (CAI): 0.727. Curator(s): P. Manque %2C J. Alves gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0296 SSA_0297 SSA_0297 mleS mleS 289846 291471 + malate dehydrogenase malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0297 SSA_0298 SSA_0298 SSA_0298 291476 292507 + malate permease GC: 40.5%25%3B Transporter classification TC:2.A.69.3.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.761. Curator(s): P. Manque gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0298 SSA_0299 SSA_0299 SSA_0299 292899 293402 + hypothetical protein GC: 47.02%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.76. Curator(s): P. Manque gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0299 SSA_0300 SSA_0300 SSA_0300 293559 294203 + hypothetical protein GC: 33.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.803. Curator(s): P. Manque gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0300 SSA_0301 SSA_0301 SSA_0301 294238 294813 + hypothetical protein GC: 33.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.775. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0301 SSA_0302 SSA_0302 pgk pgk 295030 296226 + phosphoglycerate kinase Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0302 SSA_0303 SSA_0303 sspC sspC 296591 301111 + surface protein C GC: 44.59%25%3B Codon Adaptation Index (CAI): 0.792. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): P. Manque %2C T. Kitten gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0303 SSA_0304 SSA_0304 SSA_0304 301283 301948 + cell wall degradation protein GC: 42.94%25%3B Codon Adaptation Index (CAI): 0.819. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten %2C J. Alves gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0304 SSA_0305 SSA_0305 SSA_0305 302125 302649 + hypothetical protein GC: 42.67%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.963)%3B Curator(s): T. Kitten gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0305 SSA_0306 SSA_0306 glnR glnR 302730 303095 + transcription regulator (glutamine synthetase repressor) GC: 43.99%25%3B Codon Adaptation Index (CAI): 0.836. Curator(s): T. Kitten %2C J. Alves gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0306 SSA_0307 SSA_0307 glnA glnA 303127 304473 + glutamine synthetase GC: 45.06%25%3B Codon Adaptation Index (CAI): 0.803. Curator(s): T. Kitten gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0307 SSA_0308 SSA_0308 SSA_0308 304525 304944 + hypothetical protein GC: 39.76%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): T. Kitten gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0308 SSA_0309 SSA_0309 SSA_0309 305034 305453 + glyoxalase/bleomycin resistance protein/dioxygenase GC: 39.76%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): T. Kitten gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0309 SSA_0310 SSA_0310 SSA_0310 305446 306033 + hypothetical protein GC: 40.14%25%3B Codon Adaptation Index (CAI): 0.782. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0310 SSA_0311 SSA_0311 SSA_0311 306017 306763 + hypothetical protein GC: 41.63%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): T. Kitten gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0311 SSA_0312 SSA_0312 SSA_0312 306793 308475 - metallo-beta-lactamase superfamily hydrolase GC: 48.9%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): T. Kitten gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0312 SSA_0313 SSA_0313 SSA_0313 308479 308709 - hypothetical protein GC: 41.13%25%3B Codon Adaptation Index (CAI): 0.813. Highly conserved%2C but so far Firmicutes specific. Curator(s): T. Kitten %2C J. Alves gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0313 SSA_0314 SSA_0314 wcaG wcaG 309057 310109 - nucleoside-diphosphate-sugar epimerase GC: 46.82%25%3B Codon Adaptation Index (CAI): 0.766. Curator(s): T. Kitten %2C J. Alves gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0314 SSA_0315 SSA_0315 SSA_0315 310242 310706 + MarR family transcriptional regulator GC: 46.45%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): T. Kitten gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0315 SSA_0316 SSA_0316 SSA_0316 310716 311402 + hypothetical protein GC: 50.95%25%3B Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0316 SSA_0317 SSA_0317 rimI rimI 311399 311851 + ribosomal protein alanine acetyl transferase GC: 47.46%25%3B Codon Adaptation Index (CAI): 0.741. Curator(s): T. Kitten gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0317 SSA_0318 SSA_0318 gcp gcp 311841 312851 + DNA-binding/iron metalloprotein/AP endonuclease in most organisms%2C only the N-terminal domain is present in a single polypeptide%3B in some archaea this domain is fused to a kinase domain%3B this gene is essential for growth in Escherichia coli and Bacillus subtilis%3B the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins%3B the Pyrococcus structure shows DNA-binding properties%2C iron-binding%2C ATP-binding%2C and AP endonuclease activity gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0318 SSA_0319 SSA_0319 SSA_0319 312861 313556 + branched-chain amino acid permease GC: 46.7%25%3B Transporter classification TC:2.A.78.1.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.761. Curator(s): T. Kitten gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0319 SSA_0320 SSA_0320 SSA_0320 313546 313884 + hypothetical protein GC: 41.89%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.768. SignalP prediction: Yes (prob. 0.536)%3B Curator(s): T. Kitten gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0320 SSA_0321 SSA_0321 ubiE ubiE 314007 314753 + methylase GC: 44.44%25%3B Codon Adaptation Index (CAI): 0.81. Possibly involved in ubiquinone/ menaquinone biosynthesis. Curator(s): T. Kitten %2C J. Alves gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0321 SSA_0322 SSA_0322 SSA_0322 314857 315594 + TipA family transcription regulator GC: 43.77%25%3B Codon Adaptation Index (CAI): 0.79. Helix-turn-helix prediction: AraC. Response to antibiotics or oxygen radicals. Curator(s): T. Kitten %2C J. Alves gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0322 SSA_0323 SSA_0323 SSA_0323 315714 316889 - flavoprotein GC: 50.26%25%3B Codon Adaptation Index (CAI): 0.75. Curator(s): T. Kitten gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0323 SSA_0324 SSA_0324 SSA_0324 317159 317653 + hypothetical protein GC: 46.87%25%3B Codon Adaptation Index (CAI): 0.852. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0324 SSA_0325 SSA_0325 ugpQ ugpQ 317743 319497 + membrane-anchored glycerophosphoryl diester phosphodiesterase GC: 44.84%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.982)%3B Curator(s): T. Kitten %2C J. Alves gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0325 SSA_0326 SSA_0326 SSA_0326 319614 319913 - hypothetical protein GC: 44%25%3B Codon Adaptation Index (CAI): 0.829. Curator(s): T. Kitten %2C J. Alves gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0326 SSA_0327 SSA_0327 SSA_0327 320119 320496 + glycosyltransferase GC: 38.62%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): T. Kitten gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0327 SSA_0328 SSA_0328 pepXP pepXP 320577 322865 - x-prolyl-dipeptidyl aminopeptidase catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0328 SSA_0329 SSA_0329 SSA_0329 322970 323875 + glycerol uptake facilitator/aquaporin protein GC: 45.81%25%3B Transporter classification TC:1.A.8.2.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.795. Curator(s): T. Kitten gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0329 SSA_0330 SSA_0330 SSA_0330 323939 325222 + hypothetical protein GC: 42.45%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.795. Curator(s): T. Kitten gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0330 SSA_0331 SSA_0331 cppA cppA 325318 326052 + C3-degrading proteinase GC: 42.45%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): T. Kitten gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0331 SSA_0332 SSA_0332 SSA_0332 326049 326984 + hypothetical protein GC: 47.22%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): T. Kitten gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0332 SSA_0333 SSA_0333 mvaK1 mvaK1 327135 328013 + mevalonate kinase GC: 49.37%25%3B Codon Adaptation Index (CAI): 0.763. Curator(s): T. Kitten gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0333 SSA_0334 SSA_0334 mvaD mvaD 327995 328942 + diphosphomevalonate decarboxylase GC: 47.78%25%3B Codon Adaptation Index (CAI): 0.788. Curator(s): T. Kitten gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0334 SSA_0335 SSA_0335 mvaK2 mvaK2 328932 329951 + phosphomevalonate kinase GC: 47.55%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0335 SSA_0336 SSA_0336 SSA_0336 329932 330939 + isopentenyl pyrophosphate isomerase catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0336 SSA_0337 SSA_0337 mvaA mvaA 330979 332253 - hydroxymethylglutaryl-CoA reductase GC: 50.43%25%3B Codon Adaptation Index (CAI): 0.759. Curator(s): T. Kitten gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0337 SSA_0338 SSA_0338 mvaS mvaS 332250 333428 - hydroxymethylglutaryl-CoA synthase GC: 47.16%25%3B Codon Adaptation Index (CAI): 0.76. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0338 SSA_0339 SSA_0339 SSA_0339 333573 334040 - hypothetical protein GC: 47.86%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.738. SignalP prediction: Yes (prob. 0.482)%3B Curator(s): T. Kitten gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0339 SSA_0341 SSA_0341 SSA_0341 334045 334821 - hypothetical protein GC: 47.23%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.748. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0341 SSA_0342 SSA_0342 SSA_0342 334981 337296 - pyruvate formate-lyase GC: 44.39%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): T. Kitten gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0342 SSA_0343 SSA_0343 dinP dinP 337665 338729 + DNA polymerase IV involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0343 SSA_0345 SSA_0345 SSA_0345 338943 339269 + hypothetical protein GC: 47.09%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.768. Curator(s): T. Kitten %2C J. Alves gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0345 SSA_0346 SSA_0346 SSA_0346 339588 340382 + hypothetical protein GC: 51.82%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.777. Curator(s): T. Kitten gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0346 SSA_0348 SSA_0348 SSA_0348 340428 341174 + CAAX amino protease GC: 49.8%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.727. Curator(s): T. Kitten gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0348 SSA_0349 SSA_0349 SSA_0349 341250 341888 + TetR/AcrR family transcriptional regulator GC: 49.14%25%3B Codon Adaptation Index (CAI): 0.786. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0349 SSA_0350 SSA_0350 recD recD 341942 344308 - helicase GC: 47.61%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): T. Kitten gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0350 SSA_0351 SSA_0351 spi spi 344368 344997 - Signal peptidase I GC: 45.56%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.781. SignalP prediction: Yes (prob. 0.646)%3B Curator(s): T. Kitten gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0351 SSA_0352 SSA_0352 rnhC rnhC 345001 345969 - ribonuclease HIII An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0352 SSA_0353 SSA_0353 SSA_0353 346080 346370 + hypothetical protein GC: 38.83%25%3B Codon Adaptation Index (CAI): 0.762. Curator(s): T. Kitten gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0353 SSA_0354 SSA_0354 SSA_0354 346381 346932 + hypothetical protein GC: 44.02%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.782. Required for colicin V production. Curator(s): T. Kitten gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0354 SSA_0355 SSA_0355 mutS2 mutS2 346987 349320 + DNA mismatch repair protein GC: 49.4%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0355 SSA_0356 SSA_0356 SSA_0356 349399 350817 + dipeptidase GC: 47.99%25%3B Codon Adaptation Index (CAI): 0.758. Curator(s): T. Kitten gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0356 SSA_0357 SSA_0357 SSA_0357 350903 351217 + thioredoxin GC: 45.71%25%3B Codon Adaptation Index (CAI): 0.802. Curator(s): T. Kitten gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0357 SSA_0358 SSA_0358 SSA_0358 351378 351887 - hypothetical protein GC: 30.59%25%3B Codon Adaptation Index (CAI): 0.79. Curator(s): T. Kitten gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0358 SSA_0359 SSA_0359 SSA_0359 352327 352743 + LysR family transcriptional regulator GC: 32.37%25%3B Codon Adaptation Index (CAI): 0.736. Curator(s): T. Kitten gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0359 SSA_0360 SSA_0360 SSA_0360 352844 353251 + hypothetical protein GC: 34.8%25%3B Codon Adaptation Index (CAI): 0.81. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten %2C J. Alves gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0360 SSA_0362 SSA_0362 SSA_0362 353430 353654 + thioredoxin GC: 44.44%25%3B Codon Adaptation Index (CAI): 0.8. Possibly an incomplete product. Curator(s): T. Kitten gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0362 SSA_0363 SSA_0363 dagA dagA 353998 355335 + D-alanine/glycine/Na permease GC: 49.7%25%3B Transporter classification TC:2.A.25.1.1. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.745. Curator(s): T. Kitten gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0363 SSA_0364 SSA_0364 dctA dctA 355401 356438 - serine/threonine transporter SstT involved in the import of serine and threonine coupled with the import of sodium gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0364 SSA_0365 SSA_0365 SSA_0365 356761 357624 + small-conductance mechanosensitive efflux channel GC: 46.06%25%3B Transporter classification TC:1.A.23.3.1. Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.748. Curator(s): T. Kitten gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0365 SSA_0366 SSA_0366 SSA_0366 357646 358272 + hypothetical protein GC: 43.06%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. Curator(s): T. Kitten gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0366 SSA_0367 SSA_0367 SSA_0367 358449 359351 + hypothetical protein GC: 43.08%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): T. Kitten%3B (possible metalloprotease) gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0367 SSA_0368 SSA_0368 SSA_0368 359414 359782 + hypothetical protein GC: 36.59%25%3B Codon Adaptation Index (CAI): 0.793. Curator(s): T. Kitten %2C J. Alves gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0368 SSA_0369 SSA_0369 SSA_0369 359813 359986 - NADP-specific glutamate dehydrogenase GC: 41.38%25%3B Codon Adaptation Index (CAI): 0.772. Possibly incomplete product. Curator(s): T. Kitten gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0369 SSA_0370 SSA_0370 SSA_0370 359987 360472 - acetyltransferase GC: 45.68%25%3B Codon Adaptation Index (CAI): 0.738. Curator(s): T. Kitten gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0370 SSA_0371 SSA_0371 gdhA gdhA 360503 361849 - glutamate dehydrogenase converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0371 SSA_0373 SSA_0373 pyrDA pyrDA 362202 363140 + dihydroorotate dehydrogenase 1A catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0373 SSA_0374 SSA_0374 SSA_0374 363303 364238 + peptide methionine sulfoxide reductase msrA/msrB GC: 48.72%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): T. Kitten %2C J. Alves gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0374 SSA_0375 SSA_0375 SSA_0375 364397 365269 + lipoprotein transporter GC: 41.92%25%3B Transporter classification TC:3.A.1.24.1. Codon Adaptation Index (CAI): 0.79. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten %2C J. Alves gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0375 SSA_0376 SSA_0376 SSA_0376 365519 366586 + methionine ABC transporter ATPase GC: 43.91%25%3B Transporter classification TC:3.A.1.24.2. Codon Adaptation Index (CAI): 0.776. Curator(s): T. Kitten %2C J. Alves gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0376 SSA_0377 SSA_0377 SSA_0377 366586 367278 + methionine ABC transporter permease GC: 47.33%25%3B Transporter classification TC:3.A.1.24.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. Curator(s): T. Kitten %2C J. Alves gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0377 SSA_0378 SSA_0378 SSA_0378 367416 368687 + chlorohydrolase GC: 49.29%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0378 SSA_0379 SSA_0379 SSA_0379 368962 370893 + PTS system beta-glucoside-specific transporter subunit EII GC: 44.98%25%3B Transporter classification TC:4.A.1.2.6. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.805. Curator(s): T. Kitten gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0379 SSA_0380 SSA_0380 SSA_0380 371056 372438 + enzyme of poly-gamma-glutamate biosynthesis (capsule formation) GC: 46.71%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.788. Curator(s): T. Kitten %2C J. Alves gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0380 SSA_0381 SSA_0381 SSA_0381 372903 373574 + hypothetical protein GC: 32.89%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.737. Curator(s): T. Kitten gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0381 SSA_0382 SSA_0382 SSA_0382 373690 374562 - AraC family transcriptional regulator GC: 45.13%25%3B Codon Adaptation Index (CAI): 0.758. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten %2C J. Alves gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0382 SSA_0383 SSA_0383 bglA bglA 374674 376113 + Beta-glucosidase GC: 48.06%25%3B Codon Adaptation Index (CAI): 0.785. Curator(s): T. Kitten gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0383 SSA_0384 SSA_0384 SSA_0384 376380 378509 + hypothetical protein GC: 43.15%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.803. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.997)%3B Curator(s): T. Kitten gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0384 SSA_0385 SSA_0385 opuAb opuAb 378616 380340 - glycine/betaine ABC transporter permease GC: 49.22%25%3B Transporter classification TC:3.A.1.12.5. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0385 SSA_0386 SSA_0386 opuAa opuAa 380355 381545 - glycine-betaine ABC transporter ATPase component GC: 48.53%25%3B Transporter classification TC:3.A.1.12.5. Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0386 SSA_0387 SSA_0387 SSA_0387 381792 382433 - GntR family transcriptional regulator GC: 48.29%25%3B Codon Adaptation Index (CAI): 0.735. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0387 SSA_0388 SSA_0388 SSA_0388 382614 384308 + mismatch repair ATPase GC: 45.37%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.746. SignalP prediction: Yes (prob. 0.933)%3B Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0388 SSA_0389 SSA_0389 SSA_0389 384312 385142 + hypothetical protein GC: 46.69%25%3B Codon Adaptation Index (CAI): 0.747. Curator(s): T. Kitten gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0389 SSA_0390 SSA_0390 SSA_0390 385142 385774 + hypothetical protein GC: 47.71%25%3B Codon Adaptation Index (CAI): 0.763. Curator(s): T. Kitten gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0390 SSA_0391 SSA_0391 spxB spxB 386086 387861 + pyruvate oxidase GC: 43.3%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): T. Kitten gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0391 SSA_0392 SSA_0392 SSA_0392 388016 388363 + hypothetical protein GC: 39.94%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): T. Kitten gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0392 SSA_0393 SSA_0393 SSA_0393 388906 390480 + bacteriocin ABC transporter permease/ATP-binding protein GC: 36.13%25%3B Transporter classification TC:3.A.1.112.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.77. SignalP prediction: Yes (prob. 0.695)%3B Curator(s): T. Kitten %2C J. Alves gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0393 SSA_0394 SSA_0394 SSA_0394 390713 390991 + hypothetical protein GC: 42.29%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.737. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0394 SSA_0395 SSA_0395 arb arb 391201 392640 + 6-phospho-beta-glucosidase required for arbutin uptake and metabolism gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0395 SSA_0396 SSA_0396 SSA_0396 392738 393685 - hypothetical protein GC: 45.15%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.77. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.528)%3B Curator(s): T. Kitten gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0396 SSA_0397 SSA_0397 SSA_0397 394082 394747 - hypothetical protein GC: 38.14%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.758. Curator(s): T. Kitten gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0397 SSA_0398 SSA_0398 SSA_0398 394764 396542 - hypothetical protein GC: 45.31%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.763. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten %2C J. Alves%3B beta-lactamase family gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0398 SSA_0400 SSA_0400 SSA_0400 396560 398341 - hypothetical protein GC: 48.09%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten%3B beta-lactamase family gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0400 SSA_0401 SSA_0401 SSA_0401 398602 399282 + two-component response transcriptional regulator GC: 48.75%25%3B Codon Adaptation Index (CAI): 0.789. Curator(s): T. Kitten %2C J. Alves gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0401 SSA_0402 SSA_0402 SSA_0402 399284 400159 + histidine kinase GC: 48.4%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.769. SignalP prediction: Yes (prob. 0.46)%3B Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0402 SSA_0403 SSA_0403 SSA_0403 400615 401448 + CAAX amino protease GC: 43.88%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.754. Curator(s): M. Chaplin gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0403 SSA_0405 SSA_0405 SSA_0405 401558 402175 + XRE family transcriptional regulator GC: 47.09%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.725. Curator(s): M. Chaplin %2C J. Alves gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0405 SSA_0406 SSA_0406 SSA_0406 402286 403008 - hypothetical protein GC: 43.98%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.745. Weakly similar ro membrane proteins. Curator(s): M. Chaplin %2C J. Alves gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0406 SSA_0407 SSA_0407 SSA_0407 403001 403933 - multidrug ABC transporter ATPase GC: 45.44%25%3B Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.76. Curator(s): M. Chaplin %2C J. Alves gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0407 SSA_0408 SSA_0408 SSA_0408 404079 404774 - hypothetical protein GC: 41.67%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.737. Weakly similar to membrane proteins and transporters. Curator(s): M. Chaplin %2C J. Alves gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0408 SSA_0409 SSA_0409 SSA_0409 404787 405695 - multidrug ABC transporter ATPase GC: 45.87%25%3B Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.739. Curator(s): M. Chaplin %2C J. Alves gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0409 SSA_0410 SSA_0410 SSA_0410 405840 406532 - hypothetical protein GC: 42.71%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.712. Curator(s): M. Chaplin %2C J. Alves gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0410 SSA_0411 SSA_0411 SSA_0411 406570 407328 - hypothetical protein GC: 42.56%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.756. Curator(s): M. Chaplin %2C J. Alves gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0411 SSA_0412 SSA_0412 SSA_0412 407345 408253 - multidrug ABC transporter ATPase GC: 48.73%25%3B Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.74. Curator(s): M. Chaplin %2C J. Alves gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0412 SSA_0413 SSA_0413 pabB pabB 408405 410126 - anthranilate/para-aminobenzoate synthases component I/ chorismate binding enzyme GC: 49.3%25%3B Codon Adaptation Index (CAI): 0.761. Curator(s): M. Chaplin %2C J. Alves gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0413 SSA_0414 SSA_0414 SSA_0414 410258 410629 + hypothetical protein GC: 41.4%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.723. SignalP prediction: Yes (prob. 0.829)%3B Weakly similar to integral membrane protein. Curator(s): M. Chaplin %2C J. Alves gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0414 SSA_0415 SSA_0415 SSA_0415 410708 411790 + permease GC: 48.01%25%3B Transporter classification TC:9.B.22.1.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.743. SignalP prediction: Yes (prob. 0.733)%3B Curator(s): M. Chaplin %2C J. Alves gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0415 SSA_0416 SSA_0416 metE metE 412030 414282 + 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0416 SSA_0417 SSA_0417 metF metF 414420 415298 + 5%2C10-methylenetetrahydrofolate reductase GC: 45.39%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): M. Chaplin gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0417 SSA_0418 SSA_0418 SSA_0418 415396 416244 + AraC family transcriptional regulator GC: 50.41%25%3B Codon Adaptation Index (CAI): 0.775. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0418 SSA_0419 SSA_0419 SSA_0419 416353 418590 + alpha-galactosidase GC: 49.46%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): M. Chaplin gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0419 SSA_0420 SSA_0420 SSA_0420 418760 419692 + HAD superfamily hydrolase GC: 48.98%25%3B Codon Adaptation Index (CAI): 0.766. Curator(s): M. Chaplin gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0420 SSA_0421 SSA_0421 SSA_0421 419704 420300 + phosphoglycerate mutase family protein GC: 48.07%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): M. Chaplin %2C J. Alves gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0421 SSA_0422 SSA_0422 SSA_0422 420297 420899 + phosphoglycerate mutase family protein GC: 50.75%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): M. Chaplin %2C J. Alves gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0422 SSA_0423 SSA_0423 SSA_0423 420958 421437 - hypothetical protein GC: 46.88%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.703. SignalP prediction: Yes (prob. 0.945)%3B Curator(s): M. Chaplin %2C J. Alves gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0423 SSA_0424 SSA_0424 SSA_0424 421412 422323 - exopolysaccharide biosynthesis protein GC: 48.79%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.712. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999). Related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. Curator(s): M. Chaplin gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0424 SSA_0425 SSA_0425 SSA_0425 422320 423369 - glycosyltransferase GC: 46.48%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.73. Probably involved in cell-wall biogenesis. Curator(s): M. Chaplin gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0425 SSA_0426 SSA_0426 SSA_0426 423655 424476 - hypothetical protein GC: 48.91%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.737. SignalP prediction: Yes (prob. 0.968)%3B Curator(s): M. Chaplin gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0426 SSA_0427 SSA_0427 SSA_0427 424637 427675 + SARP family transcriptional regulator GC: 47.84%25%3B Codon Adaptation Index (CAI): 0.766. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin %2C J. Alves gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0427 SSA_0428 SSA_0428 hutG hutG 427755 428894 - formimidoylglutamase catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0428 SSA_0429 SSA_0429 hutH hutH 429791 431341 - histidine ammonia-lyase catalyzes the degradation of histidine to urocanate and ammmonia gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0429 SSA_0430 SSA_0430 SSA_0430 431338 432690 - cationic amino acid transporter GC: 42.72%25%3B Transporter classification TC:2.A.3.6.1. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.757. Curator(s): M. Chaplin %2C J. Alves gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0430 SSA_0431 SSA_0431 SSA_0431 432766 433365 - hypothetical protein GC: 47%25%3B Codon Adaptation Index (CAI): 0.712. Curator(s): M. Chaplin gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0431 SSA_0432 SSA_0432 SSA_0432 433378 435051 - formate--tetrahydrofolate ligase catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0432 SSA_0433 SSA_0433 SSA_0433 435118 435744 - methenyltetrahydrofolate cyclohydrolase GC: 49.12%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): M. Chaplin gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0433 SSA_0434 SSA_0434 SSA_0434 435759 436658 - glutamate formiminotransferase GC: 47.11%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): M. Chaplin gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0434 SSA_0435 SSA_0435 hutU hutU 436779 438809 - urocanate hydratase catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0435 SSA_0436 SSA_0436 hutI hutI 439009 440274 + imidazolonepropionase catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate%2C the third step in the histidine degradation pathway gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0436 SSA_0437 SSA_0437 rpsF rpsF 440453 440743 + 30S ribosomal protein S6 binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21 gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0437 SSA_0438 SSA_0438 ssb ssb 440755 441249 + single-stranded DNA-binding protein binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0438 SSA_0440 SSA_0440 rpsR rpsR 441286 441525 + 30S ribosomal protein S18 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0440 SSA_0441 SSA_0441 SSA_0441 441621 442235 + hypothetical protein GC: 40.16%25%3B Codon Adaptation Index (CAI): 0.793. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0441 SSA_0442 SSA_0442 SSA_0442 442377 443090 + multidrug ABC transporter ATPase GC: 40.62%25%3B Transporter classification TC:3.A.1.211.3. Codon Adaptation Index (CAI): 0.727. Curator(s): M. Chaplin %2C J. Alves gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0442 SSA_0443 SSA_0443 SSA_0443 443017 444627 + ABC transporter permease GC: 41.28%25%3B Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.726. Curator(s): M. Chaplin %2C J. Alves gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0443 SSA_0445 SSA_0445 SSA_0445 444627 444836 + hypothetical protein GC: 37.14%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.721. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): M. Chaplin gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0445 SSA_0446 SSA_0446 SSA_0446 444854 445528 - hypothetical protein GC: 48.15%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.761. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin %2C J. Alves gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0446 SSA_0447 SSA_0447 SSA_0447 445547 446491 - magnesium/cobalt transporter CorA GC: 45.5%25%3B Transporter classification TC:1.A.35.3.1. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.744. Curator(s): M. Chaplin %2C J. Alves gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0447 SSA_0448 SSA_0448 uvrA uvrA 446620 449451 + excinuclease ABC subunit A The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB%2C the uvrA molecules dissociate gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0448 SSA_0449 SSA_0449 pepP pepP 449604 450665 + aminopeptidase GC: 46.8%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): M. Chaplin gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0449 SSA_0450 SSA_0450 efp efp 450727 451287 + elongation factor P Involved in peptide bond synthesis%3B alters the affinity of the ribosome for aminoacyl-tRNA gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0450 SSA_0451 SSA_0451 SSA_0451 451307 451696 + hypothetical protein GC: 44.87%25%3B Codon Adaptation Index (CAI): 0.764. Curator(s): M. Chaplin gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0451 SSA_0452 SSA_0452 nusB nusB 451674 452120 + transcription antitermination protein NusB Regulates rRNA biosynthesis by transcriptional antitermination gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0452 SSA_0453 SSA_0453 SSA_0453 452352 456053 + Type II secretory pathway%2C pullulanase PulA glycosidase GC: 45.19%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.777. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): M. Chaplin gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0453 SSA_0454 SSA_0454 scrR scrR 456140 457105 - lactose operon transcriptional repressor%2C LacI family GC: 46.79%25%3B Codon Adaptation Index (CAI): 0.744. Helix-turn-helix prediction: LysR\AraC. Curator(s): M. Chaplin %2C J. Alves gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0454 SSA_0455 SSA_0455 scrB scrB 457086 458540 - sucrose-6-phosphate hydrolase GC: 46.19%25%3B Codon Adaptation Index (CAI): 0.771. Curator(s): M. Chaplin %2C T. Kitten gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0455 SSA_0456 SSA_0456 scrA scrA 458735 460645 + phosphotransferase system IIC components%2C glucose/maltose/N-acetylglucosamine-specific GC: 42.12%25%3B Transporter classification TC:4.A.1.2.1. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.809. Curator(s): M. Chaplin gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0456 SSA_0457 SSA_0457 scrK scrK 460803 461702 + fructokinase GC: 47.78%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): M. Chaplin gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0457 SSA_0458 SSA_0458 SSA_0458 461749 462159 + peptide deformylase cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins%3B binds iron(2+) gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0458 SSA_0459 SSA_0459 SSA_0459 462238 462573 + hypothetical protein GC: 44.64%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.734. SignalP prediction: Yes (prob. 0.983)%3B Curator(s): M. Chaplin gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0459 SSA_0460 SSA_0460 SSA_0460 462748 463206 + multiple antibiotic resistance operon transcription repressor MarR GC: 42.48%25%3B Codon Adaptation Index (CAI): 0.791. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin %2C J. Alves gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0460 SSA_0461 SSA_0461 SSA_0461 463199 464965 + multidrug ABC transporter ATPase/permease GC: 47.43%25%3B Transporter classification TC:3.A.1.117.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.771. Curator(s): M. Chaplin %2C J. Alves gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0461 SSA_0462 SSA_0462 SSA_0462 464955 466712 + multidrug ABC transporter ATPase/permease GC: 47.33%25%3B Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.48)%3B Curator(s): M. Chaplin %2C J. Alves gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0462 SSA_0463 SSA_0463 SSA_0463 467005 468363 + cobyrinic acid a%2Cc-diamide synthase responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0463 SSA_0464 SSA_0464 SSA_0464 468365 469315 + cobalamin biosynthesis protein cobD GC: 49.42%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.765. Curator(s): M. Chaplin gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0464 SSA_0465 SSA_0465 cbiC cbiC 469325 470023 + cobalt-precorrin-8X methylmutase catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0465 SSA_0466 SSA_0466 cbiC cbiC 470024 470728 + cobalt-precorrin-8X methylmutase catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0466 SSA_0467 SSA_0467 cbiD cbiD 470728 471855 + cobalt-precorrin-6A synthase Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0467 SSA_0468 SSA_0468 SSA_0468 471846 472478 + cobalt-precorrin-6Y C(5)-methyltransferase catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0468 SSA_0469 SSA_0469 cobL cobL 472450 473019 + cobalt-precorrin-6Y C(15)-methyltransferase catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W%3B decarboxylating gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0469 SSA_0470 SSA_0470 cobM cobM 473019 473792 + precorrin-4 methylase GC: 49.61%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): M. Chaplin %2C J. Alves gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0470 SSA_0471 SSA_0471 SSA_0471 473740 474843 + cobalamin biosynthesis protein CbiG catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0471 SSA_0472 SSA_0472 SSA_0472 474920 475645 + precorrin-3B C(17)-methyltransferase GC: 44.9%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): M. Chaplin gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0472 SSA_0473 SSA_0473 SSA_0473 475642 476391 + precorrin-6x reductase GC: 51.6%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): M. Chaplin gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0473 SSA_0474 SSA_0474 SSA_0474 476410 477849 + uroporphyrin-III C-methyltransferase GC: 50.07%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): M. Chaplin gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0474 SSA_0475 SSA_0475 SSA_0475 477863 478630 + CbiK protein GC: 48.44%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): M. Chaplin gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0475 SSA_0476 SSA_0476 SSA_0476 478640 479341 + cobalt-precorrin-2 C(20)-methyltransferase catalyzes the formation of precorrin-3A from precorrin-2 gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0476 SSA_0477 SSA_0477 cbiM cbiM 479363 480145 + cobalt ABC transporter ATP-binding protein GC: 43.81%25%3B Transporter classification TC:3.A.1.23.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.768. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.995)%3B Curator(s): M. Chaplin %2C J. Alves gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0477 SSA_0478 SSA_0478 cbiN cbiN 480142 480447 + cobalt transport protein cbiN GC: 42.48%25%3B Transporter classification TC:3.A.1.18.1. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.778. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): M. Chaplin %2C J. Alves gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0478 SSA_0479 SSA_0479 SSA_0479 480565 481239 + CbiQ protein GC: 43.41%25%3B Transporter classification TC:3.A.1.18.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.791. Curator(s): M. Chaplin %2C T. Kitten gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0479 SSA_0480 SSA_0480 SSA_0480 481302 482117 + cobalt ABC transporter ATP-binding protein GC: 48.16%25%3B Transporter classification TC:3.A.1.18.1. Codon Adaptation Index (CAI): 0.78. Curator(s): M. Chaplin gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0480 SSA_0481 SSA_0481 SSA_0481 482102 483601 + cobyric acid synthase catalyzes amidations at positions B%2C D%2C E%2C and G on adenosylcobyrinic A%2CC-diamide. NH(2) groups are provided by glutamine%2C and one molecule of ATP is hydrogenolyzed for each amidation gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0481 SSA_0482 SSA_0482 SSA_0482 483598 484173 + ATP:cobalamin adenosyl transferase GC: 50.87%25%3B Codon Adaptation Index (CAI): 0.746. Curator(s): M. Chaplin gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0482 SSA_0483 SSA_0483 SSA_0483 484185 484616 + siroheme synthase GC: 50.46%25%3B Codon Adaptation Index (CAI): 0.724. Curator(s): M. Chaplin gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0483 SSA_0484 SSA_0484 SSA_0484 484632 485885 + glutamyl-tRNA reductase GC: 48.09%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): M. Chaplin gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0484 SSA_0485 SSA_0485 SSA_0485 485872 486792 + porphobilinogen deaminase GC: 53.53%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): M. Chaplin gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0485 SSA_0486 SSA_0486 hemD hemD 486777 487502 + uroporphyrinogen-III synthase catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane%3B functions in tetrapyrrole and heme biosynthesis gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0486 SSA_0487 SSA_0487 SSA_0487 487489 488460 + delta-aminolevulinic acid dehydratase catalyzes the formation of porphobilinogen from 5-aminolevulinate gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0487 SSA_0488 SSA_0488 SSA_0488 488504 489802 + glutamate-1-semialdehyde 2%2C1-aminomutase GC: 51.27%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): M. Chaplin %2C T. Kitten gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0488 SSA_0489 SSA_0489 cobU cobU 489795 490379 + adenosylcobinamide kinase GC: 53.5%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): M. Chaplin %2C J. Alves gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0489 SSA_0490 SSA_0490 SSA_0490 490376 491104 + cobalamin 5'-phosphate synthase GC: 49.79%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.736. Curator(s): M. Chaplin gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0490 SSA_0491 SSA_0491 SSA_0491 491101 491673 + alpha-ribazole-5'-phosphate phosphatase GC: 51.31%25%3B Codon Adaptation Index (CAI): 0.754. Curator(s): M. Chaplin gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0491 SSA_0492 SSA_0492 SSA_0492 491728 492831 + NADH-dependent flavin oxidoreductase GC: 51.63%25%3B Codon Adaptation Index (CAI): 0.778. Curator(s): M. Chaplin gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0492 SSA_0493 SSA_0493 SSA_0493 493008 494543 + peptide ABC transporter periplasmic protein GC: 46.81%25%3B Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.779. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): M. Chaplin %2C J. Alves gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0493 SSA_0494 SSA_0494 SSA_0494 494547 495329 + peptide ABC transporter ATPase GC: 50.83%25%3B Transporter classification TC:3.A.1.5.9. Codon Adaptation Index (CAI): 0.752. Helix-turn-helix prediction: AraC. Curator(s): M. Chaplin %2C J. Alves gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0494 SSA_0495 SSA_0495 SSA_0495 495326 496096 + peptide ABC transporter ATPase GC: 52.01%25%3B Transporter classification TC:3.A.1.5.6. Codon Adaptation Index (CAI): 0.774. Curator(s): M. Chaplin %2C J. Alves gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0495 SSA_0496 SSA_0496 SSA_0496 496086 497069 + succinylglutamate desuccinylase/aspartoacylase family protein GC: 51.42%25%3B Codon Adaptation Index (CAI): 0.758. Curator(s): M. Chaplin %2C J. Alves gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0496 SSA_0497 SSA_0497 SSA_0497 497062 498057 + nickel ABC transporter GC: 49.4%25%3B Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): M. Chaplin gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0497 SSA_0498 SSA_0498 SSA_0498 498050 498859 + peptide ABC transporter permease GC: 50%25%3B Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.755. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): M. Chaplin %2C J. Alves gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0498 SSA_0499 SSA_0499 SSA_0499 499055 500551 + peptide ABC transporter periplasmic protein GC: 45.02%25%3B Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.803. Curator(s): M. Chaplin %2C J. Alves gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0499 SSA_0500 SSA_0500 SSA_0500 500643 501584 + peptide ABC transporter%2C permease protein GC: 45.75%25%3B Transporter classification TC:3.A.1.5.3. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.747. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): D. Akan. gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0500 SSA_0502 SSA_0502 SSA_0502 501694 502383 + peptide ABC transporter%2C permease protein GC: 45.94%25%3B Transporter classification TC:3.A.1.5.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.782. Curator(s): D. Akan. gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0502 SSA_0503 SSA_0503 SSA_0503 502371 503162 + peptide ABC transporter%2C ATP-binding protein GC: 49.37%25%3B Transporter classification TC:3.A.1.5.9. Codon Adaptation Index (CAI): 0.763. Curator(s): D. Akan. gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0503 SSA_0504 SSA_0504 amiF amiF 503149 503859 + peptide ABC transporter%2C ATP-binding protein GC: 47.96%25%3B Transporter classification TC:3.A.1.5.3. Codon Adaptation Index (CAI): 0.747. Curator(s): D. Akan. gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0504 SSA_0505 SSA_0505 SSA_0505 503912 504487 + hypothetical protein GC: 47.22%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): D. Akan %2C J. Alves gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0505 SSA_0506 SSA_0506 SSA_0506 504520 505719 - (Fe-S)-binding protein GC: 48.25%25%3B Codon Adaptation Index (CAI): 0.753. Curator(s): D. Akan. gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0506 SSA_0507 SSA_0507 SSA_0507 505861 506502 + hypothetical protein GC: 36.29%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.779. Curator(s): D. Akan. gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0507 SSA_0508 SSA_0508 SSA_0508 506808 508124 + hypothetical protein GC: 43.89%25%3B Codon Adaptation Index (CAI): 0.799. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): D. Akan %2C J. Alves gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0508 SSA_0509 SSA_0509 SSA_0509 508164 508598 + propanediol utilization protein GC: 45.29%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): D. Akan. gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0509 SSA_0510 SSA_0510 SSA_0510 508663 509757 + L-threonine-O-3-phosphate decarboxylase GC: 48.58%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): D. Akan. gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0510 SSA_0511 SSA_0511 pduX pduX 509750 510616 + propanediol utilization kinase GC: 50.17%25%3B Codon Adaptation Index (CAI): 0.745. Curator(s): D. Akan %2C J. Alves gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0511 SSA_0512 SSA_0512 SSA_0512 510579 511685 + nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase GC: 49.14%25%3B Codon Adaptation Index (CAI): 0.779. Curator(s): D. Akan. gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0512 SSA_0513 SSA_0513 SSA_0513 511698 512297 + ATP:cob(I)alamin adenosyltransferase GC: 45.17%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): D. Akan. gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0513 SSA_0514 SSA_0514 SSA_0514 513017 514159 + PduQ protein GC: 45.23%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): D. Akan. gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0514 SSA_0515 SSA_0515 SSA_0515 514274 514600 + propanediol utilization protein PduU GC: 46.48%25%3B Codon Adaptation Index (CAI): 0.757. Curator(s): D. Akan. gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0515 SSA_0516 SSA_0516 SSA_0516 514625 515200 + two-component response regulator GC: 42.71%25%3B Codon Adaptation Index (CAI): 0.761. Curator(s): D. Akan %2C J. Alves gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0516 SSA_0517 SSA_0517 SSA_0517 515200 516636 + sensor histidine kinase GC: 44.05%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): D. Akan. gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0517 SSA_0518 SSA_0518 eutA eutA 516750 518183 + reactivating factor for ethanolamine ammonia lyase ethanolamine utilization protein EutA gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0518 SSA_0519 SSA_0519 SSA_0519 518215 519585 + ethanolamine ammonia-lyase large subunit GC: 43.76%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): D. Akan. gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0519 SSA_0520 SSA_0520 SSA_0520 519602 520522 + ethanolamine ammonia-lyase small subunit catalyzes the formation of acetaldehyde from ethanolamine gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0520 SSA_0521 SSA_0521 eutL eutL 520532 521191 + ethanolamine utilization protein EutL GC: 47.88%25%3B Codon Adaptation Index (CAI): 0.777. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.931)%3B Curator(s): D. Akan %2C J. Alves gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0521 SSA_0522 SSA_0522 SSA_0522 521207 521770 + ethanolamine utilization protein GC: 42.38%25%3B Codon Adaptation Index (CAI): 0.752. Curator(s): D. Akan. gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0522 SSA_0523 SSA_0523 SSA_0523 521777 523255 + aldehyde dehydrogenase GC: 44.9%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): D. Akan. gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0523 SSA_0524 SSA_0524 SSA_0524 523290 523571 + microcompartment protein GC: 45.39%25%3B Codon Adaptation Index (CAI): 0.788. Curator(s): D. Akan. gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0524 SSA_0525 SSA_0525 SSA_0525 523627 523902 + microcompartment protein GC: 45.65%25%3B Codon Adaptation Index (CAI): 0.79. Curator(s): D. Akan. gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0525 SSA_0526 SSA_0526 SSA_0526 524100 524741 + hypothetical protein GC: 41.43%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): D. Akan. gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0526 SSA_0527 SSA_0527 pduL pduL 524765 525391 + propanediol utilization protein PduL GC: 43.7%25%3B Codon Adaptation Index (CAI): 0.818. Helix-turn-helix prediction: AraC. Curator(s): D. Akan %2C J. Alves gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0527 SSA_0528 SSA_0528 SSA_0528 525423 526070 + hypothetical protein GC: 42.28%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): D. Akan. gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0528 SSA_0529 SSA_0529 SSA_0529 526085 526366 + ethanolamine utilization protein GC: 42.55%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): D. Akan. gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0529 SSA_0530 SSA_0530 eutH eutH 526383 527477 + ethanolamine transporter GC: 45.57%25%3B Transporter classification TC:9.A.28.1.1. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.787. Curator(s): D. Akan %2C J. Alves gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0530 SSA_0531 SSA_0531 eutQ eutQ 527495 527944 + ethanolamine utilization protein EutQ GC: 46.22%25%3B Codon Adaptation Index (CAI): 0.83. Curator(s): D. Akan %2C J. Alves gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0531 SSA_0532 SSA_0532 pduB pduB 528384 529088 + propanediol utilization protein PduB GC: 46.67%25%3B Codon Adaptation Index (CAI): 0.806. Helix-turn-helix prediction: AraC. Curator(s): D. Akan %2C J. Alves gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0532 SSA_0533 SSA_0533 pduC pduC 529110 530771 + glycerol dehydratase large subunit pduC GC: 47.41%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): D. Akan. gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0533 SSA_0535 SSA_0535 SSA_0535 530783 531451 + propanediol utilization: dehydratase%2C medium subunit GC: 45.74%25%3B Codon Adaptation Index (CAI): 0.816. Curator(s): D. Akan. gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0535 SSA_0536 SSA_0536 SSA_0536 531482 531997 + B12-dependent diol dehydratase small subunit GC: 44.19%25%3B Codon Adaptation Index (CAI): 0.785. Curator(s): D. Akan. gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0536 SSA_0537 SSA_0537 SSA_0537 532097 533953 + propanediol utilization:dioldehydratase reactivation GC: 47.82%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): D. Akan. gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0537 SSA_0538 SSA_0538 pduH pduH 533934 534314 + PduH protein GC: 47.24%25%3B Codon Adaptation Index (CAI): 0.72. Curator(s): D. Akan. gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0538 SSA_0539 SSA_0539 pduO pduO 534373 534927 + PduO protein GC: 46.67%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): D. Akan. gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0539 SSA_0540 SSA_0540 SSA_0540 535095 535808 + glycerol uptake facilitator protein GC: 48.88%25%3B Transporter classification TC:1.A.8.2.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.745. Curator(s): D. Akan. gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0540 SSA_0541 SSA_0541 SSA_0541 535943 537142 + acetate kinase GC: 43.92%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): D. Akan. gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0541 SSA_0543 SSA_0543 secA secA 537419 539938 + preprotein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0543 SSA_0544 SSA_0544 aroG aroG 539959 540990 + phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0544 SSA_0546 SSA_0546 aro aro 540992 542023 + phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0546 SSA_0547 SSA_0547 acpS acpS 542131 542493 + 4'-phosphopantetheinyl transferase Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0547 SSA_0548 SSA_0548 alr alr 542480 543589 + alanine racemase converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0548 SSA_0549 SSA_0549 recG recG 543696 545711 + ATP-dependent DNA helicase RecG catalyzes branch migration in Holliday junction intermediates gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0549 SSA_0551 SSA_0551 ansB ansB 546421 547383 - L-asparaginase GC: 49.53%25%3B Codon Adaptation Index (CAI): 0.753. Curator(s): D. Akan. gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0551 SSA_0552 SSA_0552 SSA_0552 547564 548961 + Cof family protein GC: 46.49%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): D. Akan. gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0552 SSA_0553 SSA_0553 SSA_0553 549051 549401 + hypothetical protein GC: 42.17%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): D. Akan. gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0553 SSA_0554 SSA_0554 SSA_0554 549405 549752 + hypothetical protein GC: 41.09%25%3B Codon Adaptation Index (CAI): 0.761. Curator(s): D. Akan %2C J. Alves gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0554 SSA_0555 SSA_0555 SSA_0555 549755 551506 + hypothetical protein GC: 40.41%25%3B Codon Adaptation Index (CAI): 0.753. Curator(s): D. Akan. gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0555 SSA_0556 SSA_0556 SSA_0556 551605 551982 + hypothetical protein GC: 31.48%25%3B Codon Adaptation Index (CAI): 0.782. Curator(s): D. Akan. gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0556 SSA_0557 SSA_0557 SSA_0557 552040 552453 + hypothetical protein GC: 38.89%25%3B Codon Adaptation Index (CAI): 0.738. Curator(s): D. Akan. gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0557 SSA_0558 SSA_0558 SSA_0558 552475 552789 + hypothetical protein GC: 38.73%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): D. Akan. gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0558 SSA_0559 SSA_0559 SSA_0559 552802 553179 + hypothetical protein GC: 31.48%25%3B Codon Adaptation Index (CAI): 0.764. Curator(s): D. Akan. gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0559 SSA_0560 SSA_0560 SSA_0560 553406 553777 + hypothetical protein GC: 30.38%25%3B Codon Adaptation Index (CAI): 0.785. Curator(s): D. Akan %2C J. Alves gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0560 SSA_0561 SSA_0561 SSA_0561 553770 554315 + RNA:NAD 2'-phosphotransferase GC: 31.32%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): D. Akan %2C J. Alves gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0561 SSA_0562 SSA_0562 SSA_0562 554608 554919 + hypothetical protein GC: 32.37%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): D. Akan %2C J. Alves gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0562 SSA_0563 SSA_0563 SSA_0563 555037 555489 - universal stress protein GC: 45.7%25%3B Codon Adaptation Index (CAI): 0.795. Curator(s): D. Akan. gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0563 SSA_0564 SSA_0564 SSA_0564 555834 557048 + aminotransferase broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0564 SSA_0565 SSA_0565 SSA_0565 557370 559955 + hypothetical protein GC: 45.36%25%3B Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Weakly similar to surface exclusion protein prgA. Curator(s): D. Akan %2C J. Alves gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0565 SSA_0566 SSA_0566 codY codY 560157 560945 + CodY family transcriptional regulator CodY%3B DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0566 SSA_0567 SSA_0567 SSA_0567 560945 561502 + isochorismitase family protein GC: 42.29%25%3B Codon Adaptation Index (CAI): 0.802. Curator(s): D. Akan. gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0567 SSA_0568 SSA_0568 aspS aspS 561814 563550 + aspartyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0568 SSA_0569 SSA_0569 gatC gatC 563753 564055 + aspartyl/glutamyl-tRNA amidotransferase subunit C allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA%3B some Mycoplasma proteins contain an N-terminal fusion to an unknown domain gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0569 SSA_0570 SSA_0570 gatA gatA 564055 565521 + aspartyl/glutamyl-tRNA amidotransferase subunit A allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0570 SSA_0571 SSA_0571 gatB gatB 565521 566954 + aspartyl/glutamyl-tRNA amidotransferase subunit B allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases%3B reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0571 SSA_0572 SSA_0572 SSA_0572 567566 568612 + dehydrogenase GC: 47.76%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): D. Akan. gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0572 SSA_0573 SSA_0573 SSA_0573 568706 568822 - hypothetical protein GC: 29.91%25%3B Codon Adaptation Index (CAI): 0.688. Curator(s): D. Akan %2C J. Alves gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0573 SSA_0574 SSA_0574 SSA_0574 568891 569517 - hypothetical protein GC: 46.41%25%3B Transporter classification TC:9.B.27.1.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.765. Conserved%2C possibly membrane-associated. Curator(s): D. Akan %2C J. Alves gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0574 SSA_0575 SSA_0575 SSA_0575 569667 570176 + HAD superfamily hydrolase GC: 45.69%25%3B Codon Adaptation Index (CAI): 0.762. Curator(s): D. Akan. gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0575 SSA_0576 SSA_0576 SSA_0576 570179 571285 + GTP-binding protein YqeH in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0576 SSA_0577 SSA_0577 SSA_0577 571393 571704 + hypothetical protein GC: 44.23%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): D. Akan %2C J. Alves gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0577 SSA_0578 SSA_0578 nadD nadD 571731 572363 + nicotinic acid mononucleotide adenylyltransferase transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase%3B essential enzyme in bacteria gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0578 SSA_0579 SSA_0579 SSA_0579 572360 572959 + HAD superfamily hydrolase GC: 49.5%25%3B Codon Adaptation Index (CAI): 0.731. Curator(s): D. Akan. gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0579 SSA_0580 SSA_0580 SSA_0580 572956 573459 + isochorismatase family protein GC: 33.73%25%3B Codon Adaptation Index (CAI): 0.825. Curator(s): D. Akan. gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0580 SSA_0581 SSA_0581 SSA_0581 573469 573834 + hypothetical protein GC: 47.81%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): D. Akan %2C J. Alves gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0581 SSA_0582 SSA_0582 SSA_0582 573909 574643 + methylase GC: 47.62%25%3B Codon Adaptation Index (CAI): 0.785. Possibly involved in ubiquinone/ menaquinone biosynthesis. Curator(s): D. Akan %2C J. Alves gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0582 SSA_0583 SSA_0583 SSA_0583 574645 575739 + hypothetical protein GC: 48.77%25%3B Codon Adaptation Index (CAI): 0.76. Curator(s): D. Akan %2C J. Alves gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0583 SSA_0584 SSA_0584 SSA_0584 575946 576749 + hypothetical protein GC: 38.81%25%3B Codon Adaptation Index (CAI): 0.808. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.91)%3B Curator(s): D. Akan. gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0584 SSA_0585 SSA_0585 SSA_0585 577077 577346 + hypothetical protein GC: 45.56%25%3B Codon Adaptation Index (CAI): 0.748. Curator(s): D. Akan. gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0585 SSA_0586 SSA_0586 SSA_0586 577587 578303 + hypothetical protein GC: 43.93%25%3B Codon Adaptation Index (CAI): 0.82. Curator(s): D. Akan %2C J. Alves gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0586 SSA_0587 SSA_0587 hipO1 hipO1 578679 579821 + metal-dependent amidase/aminoacylase/carboxypeptidase GC: 49.78%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): D. Akan. gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0587 SSA_0588 SSA_0588 SSA_0588 579940 580767 + L-cystine ABC transporter substrate-binding component GC: 43%25%3B Transporter classification TC:3.A.1.3.14. Codon Adaptation Index (CAI): 0.792. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): D. Akan %2C J. Alves gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0588 SSA_0589 SSA_0589 dapE dapE 580885 582267 + acetylornithine deacetylase GC: 47.07%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): D. Akan %2C J. Alves gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0589 SSA_0590 SSA_0590 SSA_0590 582284 582877 + hypothetical protein GC: 44.44%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.733. Curator(s): D. Akan %2C J. Alves gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0590 SSA_0591 SSA_0591 SSA_0591 582909 583754 + hypothetical protein GC: 47.16%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): D. Akan %2C J. Alves gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0591 SSA_0592 SSA_0592 SSA_0592 583766 584308 + hypothetical protein GC: 46.78%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.768. SignalP prediction: Yes (prob. 0.924)%3B Curator(s): D. Akan %2C J. Alves gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0592 SSA_0593 SSA_0593 SSA_0593 584625 585611 + hypothetical protein GC: 46.1%25%3B Codon Adaptation Index (CAI): 0.799. Curator(s): D. Akan %2C J. Alves gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0593 SSA_0594 SSA_0594 SSA_0594 585770 586573 + AraC family transcriptional regulator GC: 43.66%25%3B Codon Adaptation Index (CAI): 0.78. Helix-turn-helix prediction: AraC. Curator(s): D. Akan %2C J. Alves gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0594 SSA_0595 SSA_0595 SSA_0595 586630 587043 + hypothetical protein GC: 43%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): D. Akan %2C J. Alves gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0595 SSA_0596 SSA_0596 SSA_0596 587053 587412 + hypothetical protein GC: 42.78%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): D. Akan %2C J. Alves gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0596 SSA_0597 SSA_0597 SSA_0597 587706 588623 + hypothetical protein GC: 46.41%25%3B Codon Adaptation Index (CAI): 0.792. Helix-turn-helix prediction: AraC. Curator(s): D. Akan %2C J. Alves gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0597 SSA_0599 SSA_0599 SSA_0599 588807 589067 + hypothetical protein GC: 41.76%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.799. Curator(s): D. Akan %2C J. Alves gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0599 SSA_0601 SSA_0601 SSA_0601 589287 590048 + phosphorylase Pnp/Udp family protein GC: 48.82%25%3B Codon Adaptation Index (CAI): 0.743. Curator(s): D. Akan. gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0601 SSA_0602 SSA_0602 SSA_0602 590058 591743 + cobalt ABC transporter ATPase GC: 50%25%3B Transporter classification TC:3.A.1.18.1. Codon Adaptation Index (CAI): 0.771. Curator(s): D. Akan. gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0602 SSA_0603 SSA_0603 SSA_0603 591736 592572 + cobalt ABC transporter GC: 47.55%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.736. Curator(s): D. Akan. gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0603 SSA_0604 SSA_0604 SSA_0604 592591 593052 + hypothetical protein GC: 37.45%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): D. Akan. gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0604 SSA_0605 SSA_0605 gidB gidB 593084 593797 - 16S rRNA methyltransferase GidB glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0605 SSA_0606 SSA_0606 SSA_0606 593879 594622 - peptide ABC transporter ATPase GC: 49.33%25%3B Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.735. Curator(s): D. Akan %2C J. Alves gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0606 SSA_0607 SSA_0607 SSA_0607 594680 597016 - ABC transporter permease GC: 46.94%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.754. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): D. Akan %2C J. Alves gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0607 SSA_0608 SSA_0608 mefE mefE 596991 598274 - macrolide-efflux protein GC: 45.79%25%3B Transporter classification TC:2.A.1.21.1. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.759. Curator(s): D. Akan %2C J. Alves gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0608 SSA_0609 SSA_0609 SSA_0609 598337 598954 - TetR/AcrR family transcriptional regulator GC: 43.2%25%3B Codon Adaptation Index (CAI): 0.759. Curator(s): D. Akan %2C J. Alves gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0609 SSA_0610 SSA_0610 lemA lemA 599108 599677 + LemA-like protein GC: 43.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.819. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.791)%3B Curator(s): D. Akan. gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0610 SSA_0611 SSA_0611 htpX htpX 599679 600575 + heat shock protein HtpX metalloprotease gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0611 SSA_0612 SSA_0612 rgg rgg 601036 601917 + Rgg protein GC: 39.8%25%3B Codon Adaptation Index (CAI): 0.785. Curator(s): P. Xu gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0612 SSA_0613 SSA_0613 gtfP gtfP 601987 606693 + glucosyltransferase GC: 44.13%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998)%3B Curator(s): P. Xu gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0613 SSA_0614 SSA_0614 SSA_0614 606823 608064 - transporter GC: 43.8%25%3B Transporter classification TC:2.A.1.47.1. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.754. SignalP prediction: Yes (prob. 0.955)%3B Curator(s): P. Xu %2C J. Alves gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0614 SSA_0615 SSA_0615 rggD rggD 608416 609285 - RggD GC: 43.56%25%3B Codon Adaptation Index (CAI): 0.761. Helix-turn-helix prediction: AraC. Curator(s): P. Xu gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0615 SSA_0616 SSA_0616 SSA_0616 609385 609915 + hypothetical protein GC: 43.31%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): P. Xu gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0616 SSA_0617 SSA_0617 SSA_0617 610020 611498 + membrane protease subunit GC: 44.83%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. SignalP prediction: Yes (prob. 0.698)%3B Curator(s): P. Xu %2C J. Alves gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0617 SSA_0618 SSA_0618 SSA_0618 611770 612063 - hypothetical protein GC: 40.48%25%3B Codon Adaptation Index (CAI): 0.756. Curator(s): P. Xu gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0618 SSA_0620 SSA_0620 SSA_0620 612041 612415 - hypothetical protein GC: 48.27%25%3B Codon Adaptation Index (CAI): 0.75. Curator(s): P. Xu gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0620 SSA_0621 SSA_0621 SSA_0621 612412 613827 - SOS responce UmuC protein GC: 48.31%25%3B Codon Adaptation Index (CAI): 0.751. Curator(s): P. Xu gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0621 SSA_0622 SSA_0622 SSA_0622 613832 614509 - XRE family transcriptional regulator GC: 46.02%25%3B Codon Adaptation Index (CAI): 0.741. Curator(s): P. Xu %2C J. Alves gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0622 SSA_0623 SSA_0623 SSA_0623 614652 615140 + hypothetical protein GC: 39.06%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.764. Curator(s): P. Xu gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0623 SSA_0624 SSA_0624 SSA_0624 615219 615758 + hypothetical protein GC: 48.7%25%3B Codon Adaptation Index (CAI): 0.759. Curator(s): P. Xu gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0624 SSA_0625 SSA_0625 coaD coaD 615748 616242 + phosphopantetheine adenylyltransferase Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0625 SSA_0626 SSA_0626 SSA_0626 616229 617272 + hypothetical protein GC: 46.07%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.772. SignalP prediction: Yes (prob. 0.451)%3B Curator(s): P. Xu gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0626 SSA_0627 SSA_0627 SSA_0627 617454 618035 + hypothetical protein GC: 43.3%25%3B Codon Adaptation Index (CAI): 0.821. Curator(s): P. Xu gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0627 SSA_0628 SSA_0628 SSA_0628 618032 619120 + ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0628 SSA_0629 SSA_0629 SSA_0629 619107 619646 + hypothetical protein GC: 43.52%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.784. Helix-turn-helix prediction: AraC. Curator(s): P. Xu gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0629 SSA_0631 SSA_0631 trpB2 trpB2 620012 621193 + tryptophan synthase subunit beta catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0631 SSA_0632 SSA_0632 trpE trpE 621598 622956 + anthranilate synthase component I with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0632 SSA_0633 SSA_0633 trpG trpG 622953 623516 + anthranilate synthase component II TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0633 SSA_0634 SSA_0634 trpD trpD 623527 624531 + anthranilate phosphoribosyltransferase Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0634 SSA_0635 SSA_0635 trpC trpC 624528 625295 + indole-3-glycerol phosphate synthase involved in tryptophan biosynthesis%3B amino acid biosynthesis%3B converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0635 SSA_0636 SSA_0636 trpF trpF 625324 625869 + N-(5'-phosphoribosyl)anthranilate isomerase catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0636 SSA_0637 SSA_0637 trpB trpB 625859 627082 + tryptophan synthase subunit beta catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0637 SSA_0638 SSA_0638 trpA trpA 627075 627854 + tryptophan synthase subunit alpha catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0638 SSA_0639 SSA_0639 SSA_0639 627823 627996 - hypothetical protein GC: 40.23%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.755. Curator(s): P. Xu gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0639 SSA_0640 SSA_0640 SSA_0640 628060 628959 - hypothetical protein GC: 34.78%25%3B Codon Adaptation Index (CAI): 0.773. Helix-turn-helix prediction: AraC. Curator(s): P. Xu gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0640 SSA_0641 SSA_0641 SSA_0641 629038 629487 + hypothetical protein GC: 40%25%3B Codon Adaptation Index (CAI): 0.748. Weakly similar to DNA-binding proteins. Curator(s): P. Xu %2C J. Alves gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0641 SSA_0642 SSA_0642 pilD pilD 629481 630143 - Type 4 prepilin peptidase GC: 44.19%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.709. Curator(s): P. Xu %2C J. Alves gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0642 SSA_0643 SSA_0643 SSA_0643 630162 630284 - hypothetical protein GC: 21.14%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): P. Xu gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0643 SSA_0644 SSA_0644 dps dps 630310 630825 + DNA protection protein GC: 42.25%25%3B Codon Adaptation Index (CAI): 0.828. Curator(s): P. Xu %2C J. Alves gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0644 SSA_0646 SSA_0646 SSA_0646 630918 631136 + hypothetical protein GC: 38.36%25%3B Codon Adaptation Index (CAI): 0.764. Curator(s): P. Xu gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0646 SSA_0647 SSA_0647 SSA_0647 631138 631518 + hypothetical protein GC: 42.78%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.818. Curator(s): P. Xu gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0647 SSA_0648 SSA_0648 SSA_0648 631608 631835 + hypothetical protein GC: 32.02%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.808. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): P. Xu gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0648 SSA_0649 SSA_0649 SSA_0649 631910 632635 - ribosomal small subunit pseudouridine synthase A GC: 44.21%25%3B Codon Adaptation Index (CAI): 0.799. Helix-turn-helix prediction: AraC. Curator(s): P. Xu gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0649 SSA_0650 SSA_0650 typA typA 632688 634664 + GTP-binding protein TypA GC: 42.79%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): P. Xu gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0650 SSA_0651 SSA_0651 SSA_0651 634688 634957 + hypothetical protein GC: 35.93%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.793. SignalP prediction: Yes (prob. 0.719)%3B Curator(s): P. Xu gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0651 SSA_0652 SSA_0652 murD murD 635176 636528 + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0652 SSA_0653 SSA_0653 murG murG 636530 637600 + undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0653 SSA_0654 SSA_0654 divIB divIB 637597 638802 + cell division protein DivIB GC: 41.71%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. Helix-turn-helix prediction: AraC. Curator(s): P. Xu gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0654 SSA_0655 SSA_0655 ftsA ftsA 638924 640282 + cell division protein FtsA GC: 44.59%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): P. Xu gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0655 SSA_0656 SSA_0656 ftsZ ftsZ 640299 641576 + cell division protein FtsZ GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0656 SSA_0657 SSA_0657 SSA_0657 641585 642256 + pyridoxal 5'-phosphate dependent enzymes class III GC: 38.39%25%3B Codon Adaptation Index (CAI): 0.819. Curator(s): P. Xu %2C J. Alves gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0657 SSA_0658 SSA_0658 SSA_0658 642266 642865 + hypothetical protein GC: 45.17%25%3B Codon Adaptation Index (CAI): 0.805. Curator(s): P. Xu %2C J. Alves gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0658 SSA_0659 SSA_0659 SSA_0659 643143 643928 + hypothetical protein GC: 40.08%25%3B Codon Adaptation Index (CAI): 0.793. Curator(s): P. Xu %2C J. Alves%3B contains S4-like RNA-binding domain gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0659 SSA_0660 SSA_0660 divIVA divIVA 643938 644732 + cell division protein DivIVA GC: 43.77%25%3B Codon Adaptation Index (CAI): 0.813. Curator(s): P. Xu gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0660 SSA_0661 SSA_0661 ileS ileS 645016 647808 + isoleucyl-tRNA synthetase IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0661 SSA_0662 SSA_0662 SSA_0662 647937 648392 - multiple antibiotic resistance operon transcription repressor MarR GC: 40.79%25%3B Codon Adaptation Index (CAI): 0.787. Helix-turn-helix prediction: AraC. Curator(s): P. Xu %2C J. Alves gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0662 SSA_0663 SSA_0663 SSA_0663 648492 648848 + acetyltransferase GC: 43.14%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): P. Xu gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0663 SSA_0664 SSA_0664 SSA_0664 648874 649176 - hypothetical protein GC: 35.97%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): P. Xu %2C J. Alves gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0664 SSA_0665 SSA_0665 SSA_0665 649244 649693 - MutT/NUDIX family NTP pyrophosphohydrolase GC: 46.67%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): P. Xu %2C J. Alves gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0665 SSA_0666 SSA_0666 SSA_0666 649771 649878 - hypothetical protein GC: 32.41%25%3B Codon Adaptation Index (CAI): 0.818. Curator(s): P. Xu gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0666 SSA_0667 SSA_0667 SSA_0667 649918 650817 + transcriptional regulator GC: 43.11%25%3B Codon Adaptation Index (CAI): 0.75. Curator(s): P. Xu %2C J. Alves gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0667 SSA_0668 SSA_0668 SSA_0668 650877 651491 + hypothetical protein GC: 42.11%25%3B Codon Adaptation Index (CAI): 0.799. Curator(s): P. Xu gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0668 SSA_0669 SSA_0669 clpE clpE 651540 653810 - ATP dependent protease GC: 49.01%25%3B Codon Adaptation Index (CAI): 0.786. Helix-turn-helix prediction: AraC. Curator(s): P. Xu gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0669 SSA_0670 SSA_0670 SSA_0670 654060 654290 + hypothetical protein GC: 39.83%25%3B Codon Adaptation Index (CAI): 0.788. Curator(s): P. Xu gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0670 SSA_0671 SSA_0671 folD folD 654480 655334 + bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/ 5%2C10-methylene-tetrahydrofolate cyclohydrolase catalyzes the formation of 5%2C10-methenyltetrahydrofolate from 5%2C10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5%2C10-methenyltetrahydrofolate gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0671 SSA_0672 SSA_0672 SSA_0672 655331 656104 + hypothetical protein GC: 42.89%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): P. Xu gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0672 SSA_0673 SSA_0673 SSA_0673 656212 657054 + hypothetical protein GC: 49.35%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.736. Curator(s): P. Xu gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0673 SSA_0674 SSA_0674 xseA xseA 657211 658551 + exodeoxyribonuclease VII large subunit bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0674 SSA_0675 SSA_0675 xseB xseB 658529 658741 + exodeoxyribonuclease VII small subunit catalyzes the bidirectional exonucleolytic cleavage of DNA gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0675 SSA_0676 SSA_0676 ispA ispA 658738 659613 + farnesyl diphosphate synthase GC: 46.8%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): P. Xu gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0676 SSA_0677 SSA_0677 hlyA hlyA 659606 660421 + rRNA methylase GC: 49.26%25%3B Codon Adaptation Index (CAI): 0.779. Curator(s): P. Xu gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0677 SSA_0678 SSA_0678 ahrC ahrC 660414 660845 + ArgR family transcriptional regulator GC: 45.6%25%3B Codon Adaptation Index (CAI): 0.742. Curator(s): P. Xu %2C J. Alves gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0678 SSA_0679 SSA_0679 recN recN 660854 662512 + DNA repair and genetic recombination GC: 48.04%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): P. Xu gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0679 SSA_0680 SSA_0680 pphA pphA 662565 663293 + serine/threonine protein phosphatase GC: 46.36%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): P. Xu gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0680 SSA_0682 SSA_0682 SSA_0682 663578 664411 + hypothetical protein GC: 45.2%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): P. Xu gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0682 SSA_0683 SSA_0683 SSA_0683 664524 664799 + DNA-binding protein HU GC: 39.49%25%3B Codon Adaptation Index (CAI): 0.795. Curator(s): P. Xu gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0683 SSA_0684 SSA_0684 SSA_0684 665132 668953 + fibril-like structure subunit FibA GC: 45.4%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.807. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.996)%3B Curator(s): P. Xu gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0684 SSA_0685 SSA_0685 SSA_0685 669172 669492 + hypothetical protein GC: 38.01%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.759. Curator(s): P. Xu gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0685 SSA_0686 SSA_0686 fur fur 669696 670139 + Fe2+/Zn2+ uptake regulation protein GC: 47.07%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): P. Xu gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0686 SSA_0687 SSA_0687 SSA_0687 670607 671350 + hypothetical protein GC: 39.38%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.745. Curator(s): P. Xu %2C J. Alves gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0687 SSA_0688 SSA_0688 gpmA gpmA 671500 672192 + phosphoglyceromutase 2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0688 SSA_0689 SSA_0689 pbp2b pbp2b 672402 674468 + penicillin-binding protein 2B GC: 48.57%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.767. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.995)%3B Curator(s): P. Xu gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0689 SSA_0690 SSA_0690 recR recR 674572 675168 + recombination protein RecR involved in a recombinational process of DNA repair%2C independent of the recBC complex gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0690 SSA_0691 SSA_0691 ddl ddl 675373 676434 + D-alanyl-alanine synthetase A D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0691 SSA_0692 SSA_0692 murF murF 676510 677880 + D-Ala-D-Ala adding enzyme GC: 48.5%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): P. Xu gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0692 SSA_0694 SSA_0694 mutT mutT 677870 678481 + Mutator protein GC: 39.87%25%3B Codon Adaptation Index (CAI): 0.809. Curator(s): P. Xu gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0694 SSA_0695 SSA_0695 SSA_0695 678589 679275 + hypothetical protein GC: 41.63%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.784. Curator(s): P. Xu gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0695 SSA_0696 SSA_0696 SSA_0696 679294 679980 + hypothetical protein GC: 43.09%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.759. Curator(s): P. Xu gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0696 SSA_0697 SSA_0697 SSA_0697 680223 680336 + hypothetical protein GC: 34.21%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.772. Curator(s): P. Xu gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0697 SSA_0698 SSA_0698 prfC prfC 680523 682067 + peptide chain release factor 3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0698 SSA_0699 SSA_0699 SSA_0699 682356 682604 + methyltransferase GC: 31.73%25%3B Codon Adaptation Index (CAI): 0.758. Curator(s): P. Xu gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0699 SSA_0700 SSA_0700 SSA_0700 682636 683400 + hypothetical protein GC: 32.42%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.704. Curator(s): P. Xu gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0700 SSA_0701 SSA_0701 SSA_0701 684508 685416 + cation transporter GC: 42.35%25%3B Transporter classification TC:1.A.35.3.1. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.788. Curator(s): P. Xu gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0701 SSA_0702 SSA_0702 citB citB 685628 688291 + aconitate hydratase Catalyzes the conversion of citrate to isocitrate gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0702 SSA_0703 SSA_0703 SSA_0703 688294 689412 + citrate synthase catalyzes the formation of citrate from acetyl-CoA and oxaloacetate gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0703 SSA_0704 SSA_0704 SSA_0704 689414 690610 + isocitrate dehydrogenase GC: 47.95%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): P. Xu gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0704 SSA_0705 SSA_0705 SSA_0705 690642 691040 - hypothetical protein GC: 45.36%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.749. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): P. Xu gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0705 SSA_0706 SSA_0706 rheA rheA 691503 692969 + RNA helicase GC: 48.53%25%3B Codon Adaptation Index (CAI): 0.824. Curator(s): P. Xu gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0706 SSA_0707 SSA_0707 SSA_0707 693355 694101 + lactose phosphotransferase system transcriptional repressor GC: 41.9%25%3B Codon Adaptation Index (CAI): 0.788. Curator(s): P. Xu %2C J. Alves gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0707 SSA_0708 SSA_0708 SSA_0708 694284 694817 + hypothetical protein GC: 43.26%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.776. SignalP prediction: Yes (prob. 0.502)%3B Curator(s): P. Xu gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0708 SSA_0709 SSA_0709 SSA_0709 695722 695985 - hypothetical protein GC: 46.59%25%3B Codon Adaptation Index (CAI): 0.76. Curator(s): P. Xu gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0709 SSA_0710 SSA_0710 epsH epsH 694863 695729 - exopolysaccharide biosynthesis acetyltransferase GC: 43.83%25%3B Codon Adaptation Index (CAI): 0.762. Curator(s): P. Xu gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0710 SSA_0711 SSA_0711 SSA_0711 695975 696721 - hypothetical protein GC: 46.72%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): P. Xu gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0711 SSA_0712 SSA_0712 ctpE ctpE 696851 699190 - P-type ATPase-metal cation transport GC: 48.68%25%3B Transporter classification TC:3.A.3.2.4. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.758. Curator(s): P. Xu %2C J. Alves gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0712 SSA_0713 SSA_0713 plsC plsC 699348 700088 + 1-acyl-sn-glycerol-3-phosphate acyltransferase GC: 42.91%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.828. SignalP prediction: Yes (prob. 0.5)%3B Curator(s): P. Xu %2C J. Alves gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0713 SSA_0714 SSA_0714 SSA_0714 700182 700709 + hypothetical protein GC: 42.61%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.729. Curator(s): X. Ge gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0714 SSA_0715 SSA_0715 comEA comEA 700866 701546 + DNA uptake protein GC: 46.11%25%3B Transporter classification TC:3.A.11.1.1. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.777. SignalP prediction: Yes (prob. 0.536)%3B Curator(s): X. Ge %2C J. Alves gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0715 SSA_0716 SSA_0716 comEC comEC 701530 703770 + competence protein GC: 43.24%25%3B Transporter classification TC:3.A.11.1.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.763. Helix-turn-helix prediction: AraC. Curator(s): X. Ge %2C J. Alves gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0716 SSA_0718 SSA_0718 SSA_0718 703901 704995 + hypothetical protein GC: 41.64%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.823. Possibly membrane-associated%2C QG-rich protein. Curator(s): X. Ge gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0718 SSA_0720 SSA_0720 holA holA 705246 706292 + DNA polymerase III subunit delta required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0720 SSA_0721 SSA_0721 sodA sodA 706355 706960 + Mn/Fe-dependent superoxide dismutase GC: 42.57%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): X. Ge %2C J. Alves gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0721 SSA_0722 SSA_0722 SSA_0722 707015 708175 + hypothetical protein GC: 42.29%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.777. Curator(s): X. Ge %2C J. Alves%3B possible membrane-associated peptidase gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0722 SSA_0723 SSA_0723 SSA_0723 708386 708526 + hypothetical protein GC: 37.59%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.701. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.792)%3B Curator(s): X. Ge gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0723 SSA_0724 SSA_0724 SSA_0724 708792 710372 + multidrug ABC transporter ATPase/permease GC: 42.57%25%3B Transporter classification TC:3.A.1.112.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.784. SignalP prediction: Yes (prob. 0.992)%3B Curator(s): X. Ge %2C J. Alves gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0724 SSA_0725 SSA_0725 SSA_0725 710387 710872 + hypothetical protein GC: 42.8%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.721. SignalP prediction: Yes (prob. 0.78)%3B Curator(s): X. Ge gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0725 SSA_0726 SSA_0726 SSA_0726 711045 712844 + FmtA-like protein GC: 45.17%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.728. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): X. Ge gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0726 SSA_0727 SSA_0727 SSA_0727 712875 713699 + metal-dependent membrane protease GC: 45.09%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.759. SignalP prediction: Yes (prob. 0.552)%3B Curator(s): X. Ge gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0727 SSA_0728 SSA_0728 SSA_0728 713828 714583 + protease GC: 48.81%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.728. Helix-turn-helix prediction: AraC. Curator(s): X. Ge gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0728 SSA_0729 SSA_0729 SSA_0729 714537 714737 + hypothetical protein GC: 50.25%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.68. Curator(s): X. Ge gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0729 SSA_0730 SSA_0730 SSA_0730 714958 715227 + arsenical resistance operon repressor ArsR GC: 41.85%25%3B Codon Adaptation Index (CAI): 0.705. Curator(s): X. Ge %2C J. Alves gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0730 SSA_0731 SSA_0731 SSA_0731 715205 715714 + hypothetical protein GC: 41.96%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.737. SignalP prediction: Yes (prob. 0.531)%3B Curator(s): X. Ge gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0731 SSA_0732 SSA_0732 SSA_0732 715801 715986 - transposase GC: 33.87%25%3B Codon Adaptation Index (CAI): 0.726. Curator(s): X. Ge gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0732 SSA_0733 SSA_0733 SSA_0733 716209 716997 + hypothetical protein GC: 45.25%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.773. Curator(s): X. Ge gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0733 SSA_0734 SSA_0734 SSA_0734 717035 717256 + arsenical resistance operon repressor ArsR GC: 41.89%25%3B Codon Adaptation Index (CAI): 0.751. Helix-turn-helix prediction: AraC. Curator(s): X. Ge %2C J. Alves gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0734 SSA_0735 SSA_0735 SSA_0735 717243 717740 + hypothetical protein GC: 34.54%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.743. Curator(s): X. Ge gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0735 SSA_0736 SSA_0736 SSA_0736 717788 718474 + catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases GC: 42.07%25%3B Codon Adaptation Index (CAI): 0.805. Curator(s): X. Ge gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0736 SSA_0737 SSA_0737 sagP sagP 718764 719993 + arginine deiminase catalyzes the degradation of arginine to citruline and ammonia gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0737 SSA_0738 SSA_0738 arc arc 720044 721060 + ornithine carbamoyltransferase catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0738 SSA_0739 SSA_0739 arcC arcC 721227 722174 + carbamate kinase catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0739 SSA_0740 SSA_0740 SSA_0740 722380 723891 + C4-dicarboxylate anaerobic carrier%2C arginine transporter GC: 44.71%25%3B Transporter classification TC:9.B.50.1.1. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 1)%3B Curator(s): X. Ge %2C J. Alves gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0740 SSA_0741 SSA_0741 arcT arcT 723913 725250 + hypothetical protein GC: 48.8%25%3B Codon Adaptation Index (CAI): 0.771. Curator(s): X. Ge %2C J. Alves gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0741 SSA_0743 SSA_0743 argR argR 725379 725849 - transcriptional repressor (arginine synthesis) GC: 45.44%25%3B Codon Adaptation Index (CAI): 0.763. Curator(s): X. Ge %2C J. Alves gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0743 SSA_0744 SSA_0744 queA queA 725866 726894 - S-adenosylmethionine--tRNA ribosyltransferase-isomerase Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0744 SSA_0745 SSA_0745 SSA_0745 726904 727125 - hypothetical protein GC: 39.19%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.744. Curator(s): X. Ge gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0745 SSA_0746 SSA_0746 nagB nagB 727218 727925 + glucosamine-6-phosphate deaminase GC: 45.2%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): X. Ge gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0746 SSA_0747 SSA_0747 dacA dacA 728076 729431 + DD-carboxypeptidase GC: 42.92%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.81. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): X. Ge gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0747 SSA_0748 SSA_0748 SSA_0748 729526 730695 + major facilitator superfamily sugar transporter GC: 43.33%25%3B Transporter classification TC:2.A.1.5.2. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.743. SignalP prediction: Yes (prob. 0.45)%3B Curator(s): X. Ge gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0748 SSA_0749 SSA_0749 coiA coiA 730808 731758 + competence protein GC: 45.43%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): X. Ge gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0749 SSA_0750 SSA_0750 SSA_0750 731929 732315 + hypothetical protein GC: 33.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.734. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): X. Ge gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0750 SSA_0751 SSA_0751 SSA_0751 732507 734309 + oligoendopeptidase F GC: 44.48%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): X. Ge gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0751 SSA_0752 SSA_0752 SSA_0752 734311 734994 + hypothetical protein GC: 47.95%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): X. Ge gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0752 SSA_0753 SSA_0753 prsA prsA 735108 736115 + foldase protein PrsA cis/trans isomerase of peptidylprolyl%3B PPIase%3B membrane-bound lipoprotein gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0753 SSA_0755 SSA_0755 SSA_0755 736352 736837 + hypothetical protein GC: 40.12%25%3B Codon Adaptation Index (CAI): 0.804. Curator(s): X. Ge gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0755 SSA_0756 SSA_0756 alaS alaS 736876 739494 + alanyl-tRNA synthetase Catalyzes a two-step reaction%2C first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0756 SSA_0757 SSA_0757 argC argC 739736 740758 + N-acetyl-gamma-glutamyl-phosphate reductase catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0757 SSA_0758 SSA_0758 argJ argJ 740776 741969 + bifunctional ornithine acetyltransferase/N-acetylglutamate synthase bifunctional arginine biosynthesis protein ArgJ%3B functions at the 1st and 5th steps in arginine biosynthesis%3B involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0758 SSA_0759 SSA_0759 argB argB 741981 742718 + acetylglutamate kinase catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0759 SSA_0760 SSA_0760 SSA_0760 742721 743863 + acetylornithine aminotransferase GC: 47.94%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): X. Ge gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0760 SSA_0761 SSA_0761 SSA_0761 744017 744229 + XRE family transcriptional regulator GC: 48.36%25%3B Codon Adaptation Index (CAI): 0.695. Curator(s): X. Ge %2C J. Alves gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0761 SSA_0762 SSA_0762 SSA_0762 744327 745091 + hypothetical protein GC: 36.34%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.754. SignalP prediction: Yes (prob. 0.813)%3B Curator(s): X. Ge gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0762 SSA_0763 SSA_0763 SSA_0763 745120 745662 + transcription repressor GC: 42.54%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.779. Similar to negative regulator of Streptococcus sobrinus surface protein antigen gene. Curator(s): X. Ge %2C J. Alves gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0763 SSA_0765 SSA_0765 SSA_0765 745659 746360 + hypothetical protein GC: 39.89%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.74. SignalP prediction: Yes (prob. 0.566)%3B Curator(s): X. Ge gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0765 SSA_0766 SSA_0766 SSA_0766 746382 747035 + hypothetical protein GC: 39.45%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.775. SignalP prediction: Yes (prob. 0.469)%3B Curator(s): X. Ge gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0766 SSA_0767 SSA_0767 SSA_0767 747227 748114 + diacylglycerol kinase catalytic subunit GC: 44.03%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): X. Ge gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0767 SSA_0768 SSA_0768 nrdF nrdF 748226 749185 - ribonucleotide-diphosphate reductase subunit beta B2 or R2 protein%3B type 1b enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdE gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0768 SSA_0769 SSA_0769 SSA_0769 749196 749306 - hypothetical protein GC: 42.34%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): X. Ge gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0769 SSA_0770 SSA_0770 nrdE nrdE 749342 751501 - ribonucleotide-diphosphate reductase subunit alpha Catalyzes the rate-limiting step in dNTP synthesis gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0770 SSA_0771 SSA_0771 nrdH nrdH 751662 751880 - glutaredoxin-like protein GC: 39.27%25%3B Codon Adaptation Index (CAI): 0.804. Involved in electron transport system for ribonucleotide reductase system NrdEF. Curator(s): X. Ge gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0771 SSA_0772 SSA_0772 ptsH ptsH 752478 752741 + phosphocarrier protein HPr GC: 41.67%25%3B Transporter classification TC:8.A.8.1.1. Codon Adaptation Index (CAI): 0.817. Curator(s): X. Ge gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0772 SSA_0773 SSA_0773 ptsI ptsI 752743 754476 + PTS enzyme I GC: 45.5%25%3B Transporter classification TC:8.A.7.1.1. Codon Adaptation Index (CAI): 0.785. Curator(s): X. Ge gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0773 SSA_0774 SSA_0774 gapN gapN 754711 756135 + NADP-dependent glyceraldehyde-3-phosphate dehydrogenase GC: 46.39%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): X. Ge gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0774 SSA_0775 SSA_0775 glgB glgB 756521 758431 + glycogen branching protein catalyzes the transfer of a segment of a 1%2C4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0775 SSA_0776 SSA_0776 glgC glgC 758438 759580 + glucose-1-phosphate adenylyltransferase catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0776 SSA_0777 SSA_0777 glgD glgD 759570 760709 + glycogen biosynthesis protein GlgD GC: 42.89%25%3B Codon Adaptation Index (CAI): 0.775. Curator(s): X. Ge gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0777 SSA_0778 SSA_0778 glgA glgA 760706 762136 + glycogen synthase catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0778 SSA_0779 SSA_0779 glgP glgP 762349 764745 + glycogen phosphorylase GC: 46.6%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): X. Ge gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0779 SSA_0780 SSA_0780 SSA_0780 764888 765388 + acid phosphatase GC: 48.3%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.731. Curator(s): X. Ge %2C J. Alves gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0780 SSA_0781 SSA_0781 pmi pmi 765513 766454 + mannose-6-phosphate isomerase GC: 48.09%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): X. Ge gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0781 SSA_0782 SSA_0782 uncE uncE 766719 766919 + ATP synthase F0F1 subunit C produces ATP from ADP in the presence of a proton gradient across the membrane%3B subunit C is part of the membrane proton channel F0 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0782 SSA_0783 SSA_0783 uncB uncB 766955 767671 + ATP synthase F0F1 subunit A Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0783 SSA_0784 SSA_0784 uncF uncF 767690 768184 + ATP synthase F0F1 subunit B Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0784 SSA_0785 SSA_0785 uncH uncH 768184 768720 + ATP synthase F0F1 subunit delta Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0785 SSA_0786 SSA_0786 uncA uncA 768877 770241 + proton-translocating ATPase%2C F1 sector subunit alpha GC: 48.94%25%3B Transporter classification TC:3.A.2.1.2. Codon Adaptation Index (CAI): 0.786. Curator(s): X. Ge %2C J. Alves gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0786 SSA_0787 SSA_0787 uncG uncG 770257 771138 + ATP synthase F0F1 subunit gamma Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0787 SSA_0788 SSA_0788 uncD uncD 771177 772583 + ATP synthase F0F1 subunit beta Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0788 SSA_0789 SSA_0789 atpC atpC 772591 773013 + ATP synthase F0F1 subunit epsilon part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0789 SSA_0790 SSA_0790 SSA_0790 773187 773417 + hypothetical protein GC: 35.93%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.789. Curator(s): X. Ge %2C J. Alves gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0790 SSA_0791 SSA_0791 murA murA 773485 774765 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation%3B gram-positive bacteria have 2 copies of MurA which are active gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0791 SSA_0792 SSA_0792 SSA_0792 774758 774940 + hypothetical protein GC: 38.8%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.748. SignalP prediction: Yes (prob. 0.76)%3B Curator(s): X. Ge gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0792 SSA_0793 SSA_0793 endA endA 774999 775859 + DNA-entry nuclease GC: 49.94%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.969)%3B Curator(s): X. Ge gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0793 SSA_0794 SSA_0794 SSA_0794 776036 776755 + Zn-dependent protease GC: 47.22%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.753. SignalP prediction: Yes (prob. 0.542)%3B Curator(s): X. Ge gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0794 SSA_0795 SSA_0795 SSA_0795 776760 777125 + hypothetical protein GC: 39.34%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.787. Curator(s): X. Ge gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0795 SSA_0796 SSA_0796 uup uup 777225 779120 + ABC transporter ATPase GC: 50.74%25%3B Transporter classification TC:3.A.1.120.1. Codon Adaptation Index (CAI): 0.763. Curator(s): X. Ge %2C J. Alves gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0796 SSA_0797 SSA_0797 SSA_0797 779661 780524 + transcriptional regulator GC: 42.59%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): X. Ge %2C J. Alves gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0797 SSA_0798 SSA_0798 SSA_0798 780603 781784 + ABC transporter permease GC: 42.47%25%3B Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.763. Curator(s): X. Ge gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0798 SSA_0799 SSA_0799 SSA_0799 781803 782060 - hypothetical protein GC: 34.11%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.742. SignalP prediction: Yes (prob. 0.762)%3B Curator(s): X. Ge gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0799 SSA_0800 SSA_0800 cobQ cobQ 782079 782864 - glutamine amidotransferase GC: 45.04%25%3B Codon Adaptation Index (CAI): 0.762. Curator(s): X. Ge gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0800 SSA_0801 SSA_0801 SSA_0801 782864 784207 - Mur ligase family protein GC: 47.02%25%3B Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpI. Helix-turn-helix prediction: AraC. Curator(s): X. Ge gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0801 SSA_0802 SSA_0802 SSA_0802 784440 785288 + hypothetical protein GC: 44.99%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.75. Curator(s): X. Ge gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0802 SSA_0803 SSA_0803 SSA_0803 785285 786040 + hypothetical protein GC: 45.5%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.773. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): X. Ge gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0803 SSA_0804 SSA_0804 glmM glmM 786135 787487 + phosphoglucosamine mutase catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0804 SSA_0805 SSA_0805 SSA_0805 787616 789292 + collagen-binding surface protein GC: 41.74%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.794. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): X. Ge gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0805 SSA_0806 SSA_0806 SSA_0806 789410 789538 + hypothetical protein GC: 41.86%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.797. SignalP prediction: Yes (prob. 0.956)%3B Curator(s): X. Ge %2C J. Alves gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0806 SSA_0807 SSA_0807 obgE obgE 789589 790899 + GTPase ObgE essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0807 SSA_0808 SSA_0808 SSA_0808 790911 791072 + hypothetical protein GC: 42.59%25%3B Codon Adaptation Index (CAI): 0.748. Curator(s): X. Ge gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0808 SSA_0809 SSA_0809 SSA_0809 791286 791666 + hypothetical protein GC: 44.36%25%3B Codon Adaptation Index (CAI): 0.797. Highly conserved%2C active on single-stranded mRNA. Curator(s): X. Ge %2C J. Alves gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0809 SSA_0810 SSA_0810 SSA_0810 791722 792612 + hypothetical protein GC: 46.91%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): X. Ge %2C J. Alves gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0810 SSA_0811 SSA_0811 SSA_0811 792609 793586 + hypothetical protein GC: 46.93%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): X. Ge gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0811 SSA_0812 SSA_0812 SSA_0812 793583 794494 + hypothetical protein GC: 47.92%25%3B Codon Adaptation Index (CAI): 0.778. Curator(s): X. Ge gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0812 SSA_0813 SSA_0813 SSA_0813 794528 795496 - thioredoxin reductase GC: 47.57%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): X. Ge gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0813 SSA_0814 SSA_0814 SSA_0814 795609 796925 - pyridine nucleotide-disulfide oxidoreductase Involved in disulfide oxidoreductase activity and electron transport gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0814 SSA_0815 SSA_0815 SSA_0815 797115 797471 + hypothetical protein GC: 45.94%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.724. Curator(s): X. Ge gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0815 SSA_0816 SSA_0816 SSA_0816 797585 797962 + copper transport operon or penicillinase transcription repressor GC: 45.24%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): X. Ge %2C J. Alves gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0816 SSA_0817 SSA_0817 SSA_0817 797978 799435 + antirepressor regulating drug resistance GC: 45.54%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.774. SignalP prediction: Yes (prob. 0.801)%3B Curator(s): X. Ge %2C J. Alves gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0817 SSA_0818 SSA_0818 SSA_0818 799815 800546 + SPX domain-containing protein GC: 43.31%25%3B Codon Adaptation Index (CAI): 0.77. Possibly involved in polyphosphate accumulation. Curator(s): X. Ge gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0818 SSA_0819 SSA_0819 SSA_0819 800558 801241 + hypothetical protein GC: 43.13%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.76. Curator(s): L. Ozaki gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0819 SSA_0820 SSA_0820 rpsU rpsU 801389 801565 + 30S ribosomal protein S21 a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0820 SSA_0822 SSA_0822 mscL mscL 801679 802062 - large conductance mechano-sensitive ion channel GC: 42.19%25%3B Transporter classification TC:1.A.22.1.3. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.763. Curator(s): L. Ozaki gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0822 SSA_0824 SSA_0824 dnaG dnaG 802193 804001 + DNA primase synthesizes RNA primers at the replication forks gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0824 SSA_0825 SSA_0825 rpoD rpoD 804004 805116 + RNA polymerase sigma factor RpoD sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B primary sigma factor of bacterium gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0825 SSA_0826 SSA_0826 SSA_0826 805238 805576 + hypothetical protein GC: 45.72%25%3B Codon Adaptation Index (CAI): 0.822. Curator(s): L. Ozaki gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0826 SSA_0827 SSA_0827 SSA_0827 806173 807012 + hypothetical protein GC: 45.24%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): L. Ozaki gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0827 SSA_0829 SSA_0829 srpA srpA 807348 812225 + platelet-binding glycoprotein GC: 51.68%25%3B Codon Adaptation Index (CAI): 0.65. Curator(s): L. Ozaki %2C J. Alves gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0829 SSA_0830 SSA_0830 SSA_0830 812570 815794 + glycosyltransferase GC: 46.76%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): L. Ozaki gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0830 SSA_0831 SSA_0831 SSA_0831 815811 816815 + hypothetical protein GC: 49.65%25%3B Codon Adaptation Index (CAI): 0.782. Curator(s): L. Ozaki gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0831 SSA_0832 SSA_0832 secY secY 816848 818071 + preprotein translocase subunit SecY forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0832 SSA_0833 SSA_0833 SSA_0833 818080 819660 + accessory secretory protein Asp1 GC: 47.44%25%3B Transporter classification TC:3.A.5.10.1. Codon Adaptation Index (CAI): 0.781. Curator(s): L. Ozaki gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0833 SSA_0834 SSA_0834 SSA_0834 819650 821179 + accessory secretory protein Asp2 GC: 47.32%25%3B Transporter classification TC:3.A.5.10.1. Codon Adaptation Index (CAI): 0.788. Curator(s): L. Ozaki gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0834 SSA_0835 SSA_0835 SSA_0835 821176 821655 + accessory secretory protein Asp3 GC: 43.12%25%3B Transporter classification TC:3.A.5.10.1. Codon Adaptation Index (CAI): 0.758. Curator(s): L. Ozaki gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0835 SSA_0836 SSA_0836 secA2 secA2 821648 824029 + preprotein translocase subunit SecA functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B in some organisms%2C especially gram positive pathogens%2C have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0836 SSA_0837 SSA_0837 SSA_0837 824042 825562 + glucosyltransferase GC: 48.13%25%3B Codon Adaptation Index (CAI): 0.752. Curator(s): L. Ozaki gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0837 SSA_0838 SSA_0838 SSA_0838 825546 826889 + GtfB GC: 48.74%25%3B Codon Adaptation Index (CAI): 0.759. Curator(s): L. Ozaki gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0838 SSA_0839 SSA_0839 SSA_0839 826891 827073 + hypothetical protein GC: 40.44%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.784. Curator(s): L. Ozaki gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0839 SSA_0841 SSA_0841 SSA_0841 827075 827296 + hypothetical protein GC: 40.09%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.712. SignalP prediction: Yes (prob. 0.619)%3B Curator(s): L. Ozaki gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0841 SSA_0842 SSA_0842 SSA_0842 827470 827850 + effector of murein hydrolase LrgA/holin-like protein GC: 42.26%25%3B Transporter classification TC:1.E.14.1.2. Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.823. Curator(s): L. Ozaki %2C J. Alves gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0842 SSA_0843 SSA_0843 SSA_0843 827822 828538 + hypothetical protein GC: 47.7%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.736. Curator(s): L. Ozaki gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0843 SSA_0844 SSA_0844 SSA_0844 828581 829414 - hypothetical protein GC: 37.41%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.766. SignalP prediction: Yes (prob. 0.703)%3B Curator(s): L. Ozaki gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0844 SSA_0845 SSA_0845 SSA_0845 829429 830136 - multidrug ABC transporter ATPase GC: 43.08%25%3B Transporter classification TC:3.A.1.126.1. Codon Adaptation Index (CAI): 0.794. Curator(s): L. Ozaki %2C J. Alves gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0845 SSA_0846 SSA_0846 dnaE dnaE 830218 833427 + DNA polymerase III DnaE Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0846 SSA_0847 SSA_0847 pfk pfk 833512 834522 + 6-phosphofructokinase catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0847 SSA_0848 SSA_0848 pykF pykF 834579 836084 + pyruvate kinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0848 SSA_0849 SSA_0849 sip sip 836267 836824 + Signal peptidase I GC: 39.43%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.762. Curator(s): L. Ozaki gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0849 SSA_0850 SSA_0850 SSA_0850 836958 837701 + ubiquitin C-terminal hydrolase GC: 33.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): L. Ozaki gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0850 SSA_0851 SSA_0851 SSA_0851 837734 838990 - cation efflux family protein GC: 45.51%25%3B Transporter classification TC:2.A.4.1.5. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.76. Curator(s): L. Ozaki gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0851 SSA_0852 SSA_0852 pcrA pcrA 839190 841478 + ATP-dependent DNA helicase GC: 48.01%25%3B Codon Adaptation Index (CAI): 0.775. Curator(s): L. Ozaki gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0852 SSA_0854 SSA_0854 SSA_0854 841475 841873 + hypothetical protein GC: 43.11%25%3B Codon Adaptation Index (CAI): 0.733. Curator(s): L. Ozaki gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0854 SSA_0855 SSA_0855 cysD cysD 841972 843252 + O-acetylhomoserine sulfhydrylase GC: 47.07%25%3B Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0855 SSA_0856 SSA_0856 gtrB gtrB 843350 844276 + glycosyl transferase family protein GC: 45.52%25%3B Transporter classification TC:9.B.32.1.3. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.773. Curator(s): L. Ozaki gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0856 SSA_0857 SSA_0857 SSA_0857 844319 845542 + hypothetical protein GC: 37.09%25%3B Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.756. Curator(s): L. Ozaki %2C J. Alves gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0857 SSA_0858 SSA_0858 rmlD rmlD 845652 846506 + dTDP-L-rhamnose synthase GC: 46.43%25%3B Codon Adaptation Index (CAI): 0.808. Curator(s): L. Ozaki gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0858 SSA_0859 SSA_0859 tpiA tpiA 846781 847545 + triosephosphate isomerase Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0859 SSA_0860 SSA_0860 SSA_0860 847755 851798 + N-acetylmuramidase/lysin GC: 45.85%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): L. Ozaki gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0860 SSA_0861 SSA_0861 murN murN 851832 853067 - hypothetical protein GC: 46.04%25%3B Codon Adaptation Index (CAI): 0.773. Possibly involved in methicillin resistance. Curator(s): L. Ozaki gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0861 SSA_0862 SSA_0862 murM murM 853082 854311 - MurM protein GC: 45.93%25%3B Codon Adaptation Index (CAI): 0.786. Helix-turn-helix prediction: AraC. Curator(s): L. Ozaki gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0862 SSA_0863 SSA_0863 SSA_0863 854296 855105 - Cof family protein GC: 44.2%25%3B Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0863 SSA_0864 SSA_0864 SSA_0864 855107 856408 - hypothetical protein GC: 45.93%25%3B Codon Adaptation Index (CAI): 0.764. Curator(s): L. Ozaki gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0864 SSA_0865 SSA_0865 SSA_0865 856518 856910 + hypothetical protein GC: 42.49%25%3B Codon Adaptation Index (CAI): 0.802. Curator(s): L. Ozaki gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0865 SSA_0866 SSA_0866 pacL pacL 857123 859891 + cation transporter E1-E2 family ATPase GC: 45.43%25%3B Transporter classification TC:3.A.3.2.4. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.805. Curator(s): L. Ozaki gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0866 SSA_0867 SSA_0867 SSA_0867 859980 860771 + hypothetical protein GC: 40.03%25%3B Codon Adaptation Index (CAI): 0.735. Curator(s): L. Ozaki gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0867 SSA_0868 SSA_0868 SSA_0868 860765 861625 - hypothetical protein GC: 43.21%25%3B Codon Adaptation Index (CAI): 0.776. Helix-turn-helix prediction: AraC. Curator(s): L. Ozaki gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0868 SSA_0869 SSA_0869 prfB prfB 862054 863031 + peptide chain release factor 2 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2%3B in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism%3B this protein is similar to release factor 1 gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0869 SSA_0870 SSA_0870 ftsE ftsE 863076 863768 + cell division protein FtsE GC: 46.03%25%3B Transporter classification TC:3.A.5.1.1. Codon Adaptation Index (CAI): 0.786. Curator(s): L. Ozaki %2C J. Alves gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0870 SSA_0871 SSA_0871 ftsX ftsX 863761 864687 + cell division protein FtsX GC: 39.48%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.792. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): L. Ozaki gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0871 SSA_0872 SSA_0872 SSA_0872 864757 865395 - Zn-dependent hydrolases%2C including glyoxylases GC: 45.85%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): L. Ozaki gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0872 SSA_0873 SSA_0873 dinG dinG 865531 867975 + ATP-dependent DNA helicase%3B DNA polymerase III%2C epsilon subunit GC: 45.11%25%3B Codon Adaptation Index (CAI): 0.794. Curator(s): L. Ozaki gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0873 SSA_0874 SSA_0874 SSA_0874 868075 869055 + hypothetical protein GC: 44.34%25%3B Transporter classification TC:9.B.63.1.2. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.756. SignalP prediction: Yes (prob. 0.998)%3B Curator(s): L. Ozaki %2C J. Alves%3B (possible metabolite efflux protein) gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0874 SSA_0875 SSA_0875 rodA rodA 869068 870300 + rod shape determining protein (cell-cycle protein) GC: 44.77%25%3B Transporter classification TC:9.B.3.1.3. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.775. Curator(s): L. Ozaki %2C J. Alves gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0875 SSA_0876 SSA_0876 thiJ thiJ 870373 870921 + 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein GC: 47.18%25%3B Codon Adaptation Index (CAI): 0.804. Curator(s): L. Ozaki gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0876 SSA_0877 SSA_0877 SSA_0877 871148 871723 + phosphoglycolate phosphatase GC: 43.58%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): L. Ozaki gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0877 SSA_0878 SSA_0878 gyrB gyrB 871736 873685 + DNA gyrase subunit B negatively supercoils closed circular double-stranded DNA gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0878 SSA_0879 SSA_0879 ezrA ezrA 873772 875496 + septation ring formation regulator EzrA acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0879 SSA_0880 SSA_0880 SSA_0880 875591 876268 + hypothetical protein GC: 31.56%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.765. SignalP prediction: Yes (prob. 0.619)%3B Curator(s): L. Ozaki gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0880 SSA_0881 SSA_0881 SSA_0881 876344 877009 + hypothetical protein GC: 31.83%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.734. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.942)%3B Curator(s): L. Ozaki gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0881 SSA_0882 SSA_0882 serB serB 877043 877690 + phosphoserine phosphatase GC: 47.07%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): L. Ozaki gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0882 SSA_0883 SSA_0883 grk grk 877700 878818 + glycerate kinase GC: 49.78%25%3B Codon Adaptation Index (CAI): 0.752. Curator(s): L. Ozaki gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0883 SSA_0884 SSA_0884 SSA_0884 878815 879153 - hypothetical protein GC: 34.81%25%3B Codon Adaptation Index (CAI): 0.788. Curator(s): L. Ozaki gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0884 SSA_0885 SSA_0885 SSA_0885 879155 879604 - hypothetical protein GC: 43.78%25%3B Codon Adaptation Index (CAI): 0.794. Curator(s): L. Ozaki gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0885 SSA_0886 SSA_0886 eno eno 879813 881117 + phosphopyruvate hydratase enolase%3B catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0886 SSA_0887 SSA_0887 SSA_0887 881255 881356 - hypothetical protein GC: 37.25%25%3B Codon Adaptation Index (CAI): 0.764. Curator(s): L. Ozaki gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0887 SSA_0888 SSA_0888 SSA_0888 881469 882809 + magnesium/cobalt transporter GC: 39.15%25%3B Transporter classification TC:9.A.19.1.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.766. Curator(s): L. Ozaki gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0888 SSA_0889 SSA_0889 SSA_0889 882853 883044 - isoleucyl-tRNA synthetase GC: 32.81%25%3B Codon Adaptation Index (CAI): 0.815. Curator(s): L. Ozaki gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0889 SSA_0891 SSA_0891 SSA_0891 883113 884123 - 3-carboxymuconate cyclase GC: 46.59%25%3B Codon Adaptation Index (CAI): 0.763. Curator(s): L. Ozaki gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0891 SSA_0892 SSA_0892 SSA_0892 884366 884638 + ATP-binding cassette lipoprotein GC: 41.76%25%3B Codon Adaptation Index (CAI): 0.77. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.879)%3B Curator(s): L. Ozaki gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0892 SSA_0893 SSA_0893 SSA_0893 884667 885932 + ATP-binding cassette transporter-like protein GC: 44.55%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.943)%3B Curator(s): L. Ozaki gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0893 SSA_0894 SSA_0894 SSA_0894 885919 886593 + ATP-binding cassette protein GC: 47.11%25%3B Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.767. Curator(s): L. Ozaki gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0894 SSA_0895 SSA_0895 SSA_0895 886606 887823 + ATP-binding cassette transporter-like protein GC: 45.32%25%3B Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.46)%3B Curator(s): L. Ozaki gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0895 SSA_0896 SSA_0896 SSA_0896 887845 888501 + two-component response transcriptional regulator GC: 45.36%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): L. Ozaki %2C J. Alves gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0896 SSA_0897 SSA_0897 SSA_0897 888498 889871 + two component system histidine kinase GC: 45.27%25%3B Transporter classification TC:2.A.21.9.2. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.78. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.982)%3B Curator(s): L. Ozaki gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0897 SSA_0898 SSA_0898 SSA_0898 889858 889953 - hypothetical protein GC: 43.75%25%3B Codon Adaptation Index (CAI): 0.778. Curator(s): L. Ozaki gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0898 SSA_0899 SSA_0899 SSA_0899 890043 891221 + permease GC: 41.9%25%3B Transporter classification TC:9.B.22.1.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.798. Curator(s): L. Ozaki %2C J. Alves gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0899 SSA_0900 SSA_0900 SSA_0900 891208 892437 + hypothetical protein GC: 46.02%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): L. Ozaki %2C J. Alves gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0900 SSA_0901 SSA_0901 aldB aldB 892587 893306 + alpha-acetolactate decarboxylase GC: 45.83%25%3B Codon Adaptation Index (CAI): 0.808. Curator(s): L. Ozaki gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0901 SSA_0903 SSA_0903 SSA_0903 893382 893873 + NAD(P)H dehydrogenase (quinone) GC: 44.31%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): L. Ozaki %2C J. Alves gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0903 SSA_0904 SSA_0904 crpA crpA 894046 903018 + CshA-like fibrillar surface protein A GC: 46.68%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): L. Ozaki %2C J. Alves gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0904 SSA_0905 SSA_0905 crpB crpB 903220 909120 + CshA-like fibrillar surface protein B GC: 46.38%25%3B Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten %2C J. Alves gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0905 SSA_0906 SSA_0906 crpC crpC 909462 917471 + CshA-like fibrillar surface protein C GC: 46.28%25%3B Codon Adaptation Index (CAI): 0.794. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten %2C J. Alves gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0906 SSA_0907 SSA_0907 SSA_0907 917658 919307 - fibronectin-binding protein A GC: 46.85%25%3B Codon Adaptation Index (CAI): 0.771. Curator(s): T. Kitten gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0907 SSA_0908 SSA_0908 SSA_0908 919840 920847 + ABC transporter periplasmic protein GC: 44.25%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.809. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): T. Kitten %2C J. Alves gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0908 SSA_0909 SSA_0909 SSA_0909 921027 921218 + AbrB family transcriptional regulator GC: 43.75%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): T. Kitten %2C J. Alves gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0909 SSA_0910 SSA_0910 SSA_0910 921496 922221 + multidrug ABC transporter ATPase GC: 46.56%25%3B Transporter classification TC:3.A.1.105.2. Codon Adaptation Index (CAI): 0.777. Curator(s): T. Kitten %2C J. Alves gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0910 SSA_0911 SSA_0911 SSA_0911 922218 922958 + hypothetical protein GC: 42.11%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.767. SignalP prediction: Yes (prob. 0.557)%3B Curator(s): T. Kitten gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0911 SSA_0912 SSA_0912 pheS pheS 923240 924289 + phenylalanyl-tRNA synthetase subunit alpha catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a heterotetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 1 subfamily gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0912 SSA_0913 SSA_0913 SSA_0913 924335 924844 + acetyltransferase GC: 42.55%25%3B Codon Adaptation Index (CAI): 0.799. Curator(s): T. Kitten gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0913 SSA_0914 SSA_0914 pheT pheT 925092 927497 + phenylalanyl-tRNA synthetase subunit beta catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0914 SSA_0915 SSA_0915 SSA_0915 927682 928074 + hypothetical protein GC: 44.27%25%3B Codon Adaptation Index (CAI): 0.756. Curator(s): T. Kitten gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0915 SSA_0916 SSA_0916 SSA_0916 928225 929052 + 2-hydroxy-6-oxo-6-phenylhexa-2%2C4-dienoate hydrolase GC: 41.43%25%3B Codon Adaptation Index (CAI): 0.751. Curator(s): T. Kitten gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0916 SSA_0917 SSA_0917 SSA_0917 929177 930340 - cobalamin-independent methionine synthase II GC: 48.28%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten %2C J. Alves gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0917 SSA_0918 SSA_0918 SSA_0918 930538 931005 + hypothetical protein GC: 44.44%25%3B Codon Adaptation Index (CAI): 0.78. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0918 SSA_0920 SSA_0920 SSA_0920 931036 931131 + hypothetical protein GC: 29.17%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): T. Kitten gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0920 SSA_0921 SSA_0921 adhB adhB 931187 932224 + Zn-dependeant threonine dehydrogenase GC: 48.27%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): T. Kitten gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0921 SSA_0922 SSA_0922 SSA_0922 932315 933040 - hypothetical protein GC: 44.35%25%3B Codon Adaptation Index (CAI): 0.749. Curator(s): T. Kitten gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0922 SSA_0923 SSA_0923 SSA_0923 933150 933758 + TetR/AcrR family transcriptional regulator GC: 43.51%25%3B Codon Adaptation Index (CAI): 0.788. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten %2C J. Alves gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0923 SSA_0924 SSA_0924 SSA_0924 933878 934888 + peptide ABC transporter permease GC: 44.41%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.487)%3B Curator(s): T. Kitten gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0924 SSA_0925 SSA_0925 SSA_0925 934889 935554 + peptide ABC transporter ATPase GC: 48.05%25%3B Transporter classification TC:3.A.1.114.1. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0925 SSA_0926 SSA_0926 SSA_0926 935605 936021 + histone acetyltransferase HPA2-like acetyltransferase GC: 45.08%25%3B Codon Adaptation Index (CAI): 0.758. Curator(s): T. Kitten gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0926 SSA_0927 SSA_0927 SSA_0927 936189 936800 + TetR/AcrR family transcriptional regulator GC: 47.39%25%3B Codon Adaptation Index (CAI): 0.768. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten %2C J. Alves gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0927 SSA_0928 SSA_0928 SSA_0928 936819 938585 + multidrug ABC transporter ATPase/permease GC: 45.16%25%3B Transporter classification TC:3.A.1.21.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.794. SignalP prediction: Yes (prob. 0.563)%3B Curator(s): T. Kitten %2C J. Alves gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0928 SSA_0929 SSA_0929 SSA_0929 938578 940323 + multidrug ABC transporter ATPase/permease GC: 46.28%25%3B Transporter classification TC:3.A.1.21.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.78. Curator(s): T. Kitten %2C J. Alves gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0929 SSA_0931 SSA_0931 SSA_0931 940421 941395 + hypothetical protein GC: 36.82%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.77. SignalP prediction: Yes (prob. 0.515)%3B Curator(s): T. Kitten gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0931 SSA_0932 SSA_0932 SSA_0932 941593 942864 + hypothetical protein GC: 45.83%25%3B Codon Adaptation Index (CAI): 0.769. Curator(s): T. Kitten %2C J. Alves gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0932 SSA_0933 SSA_0933 SSA_0933 942874 943317 + acetyltransferase GC: 39.64%25%3B Codon Adaptation Index (CAI): 0.763. Curator(s): T. Kitten gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0933 SSA_0934 SSA_0934 SSA_0934 943348 944151 + HydD GC: 39.93%25%3B Codon Adaptation Index (CAI): 0.764. Curator(s): T. Kitten gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0934 SSA_0935 SSA_0935 truB truB 944155 945033 + tRNA pseudouridine synthase B catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0935 SSA_0936 SSA_0936 mreA mreA 945279 946211 + bifunctional riboflavin kinase/FMN adenylyltransferase catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN%3B in Bacillus the ribC gene has both flavokinase and FAD synthetase activities gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0936 SSA_0937 SSA_0937 spxA spxA 946323 946724 + Spx family transcriptional regulator the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters%3B in Bacillus subtilis this protein is a substrate for ClpXP protease%3B blocks transcription of the competence regulatory gene encoded by the srf operon%3B regulates a number of genes involved in thiol homeostasis including trxA and trxB%3B monomeric member of ArsC family of proteins%3B does not bind DNA%3B contains a disulfide bond between C10 and C13 which may sense disulfide stress gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0937 SSA_0938 SSA_0938 SSA_0938 946727 947005 + hypothetical protein GC: 40.86%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): T. Kitten gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0938 SSA_0939 SSA_0939 suhB suhB 946950 947765 + inositol monophosphatase GC: 46.69%25%3B Codon Adaptation Index (CAI): 0.769. Curator(s): T. Kitten %2C J. Alves gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0939 SSA_0940 SSA_0940 SSA_0940 947766 949070 + NOL1/NOP2/sun family protein GC: 46.36%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): T. Kitten gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0940 SSA_0941 SSA_0941 pstS pstS 949201 950082 + phosphate ABC transporter substrate-binding protein GC: 45.42%25%3B Transporter classification TC:3.A.1.7.1. Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0941 SSA_0942 SSA_0942 pstC1 pstC1 950079 950996 + phosphate ABC transporter transmembrane protein GC: 44.44%25%3B Transporter classification TC:3.A.1.7.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.798. SignalP prediction: Yes (prob. 0.697)%3B Curator(s): T. Kitten gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0942 SSA_0943 SSA_0943 pstC pstC 950986 951870 + phosphate ABC transporter permease GC: 46.33%25%3B Transporter classification TC:3.A.1.7.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.777. Curator(s): T. Kitten gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0943 SSA_0944 SSA_0944 pstB2 pstB2 951881 952684 + phosphate ABC transporter ATP-binding protein ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0944 SSA_0945 SSA_0945 pstB1 pstB1 952745 953518 + phosphate transporter ATP-binding protein ATP-binding protein%3B PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0945 SSA_0946 SSA_0946 phoU phoU 953533 954186 + phosphate transporter PhoU GC: 43.73%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0946 SSA_0947 SSA_0947 SSA_0947 954343 954936 + hypothetical protein GC: 33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.645)%3B Curator(s): T. Kitten gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0947 SSA_0948 SSA_0948 SSA_0948 955095 955688 + hypothetical protein GC: 33.5%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.763. Curator(s): T. Kitten gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0948 SSA_0949 SSA_0949 SSA_0949 955847 956455 + hypothetical protein GC: 31.36%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.798. Curator(s): T. Kitten gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0949 SSA_0950 SSA_0950 SSA_0950 956442 957848 + hypothetical protein GC: 37.81%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0950 SSA_0952 SSA_0952 SSA_0952 957859 958155 + hypothetical protein GC: 42.76%25%3B Codon Adaptation Index (CAI): 0.769. Curator(s): T. Kitten gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0952 SSA_0954 SSA_0954 SSA_0954 958164 958490 + hypothetical protein GC: 32.72%25%3B Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0954 SSA_0955 SSA_0955 pepN pepN 958659 961199 + aminopeptidase GC: 45.38%25%3B Codon Adaptation Index (CAI): 0.804. Curator(s): T. Kitten gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0955 SSA_0956 SSA_0956 sspD sspD 961363 965478 + surface protein D GC: 45.02%25%3B Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten %2C J. Alves gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0956 SSA_0957 SSA_0957 SSA_0957 966416 967231 + dehydrogenase GC: 37.62%25%3B Codon Adaptation Index (CAI): 0.74. Dehydrogenases with different specificities%2C related to short-chain alcohol dehydrogenases. Curator(s): T. Kitten gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0957 SSA_0958 SSA_0958 SSA_0958 967413 967877 + hypothetical protein GC: 47.53%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. Curator(s): T. Kitten gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0958 SSA_0959 SSA_0959 ciaR ciaR 967982 968656 + two-component response transcriptional regulator GC: 40.59%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): T. Kitten %2C J. Alves gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0959 SSA_0960 SSA_0960 ciaH ciaH 968646 970037 + sensor protein ciaH GC: 41.74%25%3B Transporter classification TC:2.A.21.9.2. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.823. Curator(s): T. Kitten gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0960 SSA_0961 SSA_0961 SSA_0961 970053 970991 + ketopantoate reductase PanE/ApbA GC: 39.3%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): T. Kitten gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0961 SSA_0962 SSA_0962 lguL lguL 971105 971491 + lactoylglutathione lyase GC: 43.67%25%3B Codon Adaptation Index (CAI): 0.829. Curator(s): T. Kitten gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0962 SSA_0963 SSA_0963 SSA_0963 971553 972950 + peptidoglycan N-acetylglucosamine deacetylase A GC: 45.35%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0963 SSA_0964 SSA_0964 deaD deaD 973044 974204 - DEAD/DEAH box helicase GC: 44.96%25%3B Codon Adaptation Index (CAI): 0.787. Curator(s): T. Kitten gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0964 SSA_0965 SSA_0965 mocA mocA 974125 975135 - oxidoreductase GC: 46.88%25%3B Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.815)%3B Curator(s): T. Kitten gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0965 SSA_0966 SSA_0966 udK udK 975203 975850 + uridine kinase functions in pyrimidine salvage%3B pyrimidine ribonucleoside kinase%3B phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0966 SSA_0967 SSA_0967 SSA_0967 976012 976680 + hypothetical protein GC: 43.8%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.746. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.7)%3B Curator(s): T. Kitten gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0967 SSA_0968 SSA_0968 SSA_0968 976839 977201 + hypothetical protein GC: 36.36%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): T. Kitten gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0968 SSA_0969 SSA_0969 SSA_0969 977352 977789 + hypothetical protein GC: 35.16%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.736. SignalP prediction: Yes (prob. 0.892)%3B Curator(s): T. Kitten gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0969 SSA_0970 SSA_0970 SSA_0970 977930 978388 + hypothetical protein GC: 35.29%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.802. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.892)%3B Curator(s): T. Kitten gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0970 SSA_0971 SSA_0971 SSA_0971 978381 980129 + hypothetical protein GC: 38.99%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): T. Kitten gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0971 SSA_0972 SSA_0972 SSA_0972 980113 980424 + hypothetical protein GC: 43.91%25%3B Codon Adaptation Index (CAI): 0.747. Curator(s): T. Kitten %2C J. Alves gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0972 SSA_0973 SSA_0973 SSA_0973 980436 980747 + hypothetical protein GC: 39.1%25%3B Codon Adaptation Index (CAI): 0.757. Curator(s): T. Kitten gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0973 SSA_0975 SSA_0975 leuA leuA 981111 982829 + 2-isopropylmalate synthase catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0975 SSA_0977 SSA_0977 leuB leuB 982842 983879 + 3-isopropylmalate dehydrogenase catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0977 SSA_0978 SSA_0978 SSA_0978 983876 984142 + hypothetical protein GC: 43.45%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.724. Curator(s): T. Kitten gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0978 SSA_0980 SSA_0980 leuC leuC 984144 985526 + isopropylmalate isomerase large subunit dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0980 SSA_0981 SSA_0981 leuD leuD 985536 986126 + isopropylmalate isomerase small subunit catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0981 SSA_0983 SSA_0983 SSA_0983 986226 987005 + hypothetical protein GC: 46.92%25%3B Codon Adaptation Index (CAI): 0.835. Curator(s): T. Kitten gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0983 SSA_0984 SSA_0984 SSA_0984 987194 987631 + SlyA-like protein GC: 41.32%25%3B Codon Adaptation Index (CAI): 0.825. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0984 SSA_0985 SSA_0985 SSA_0985 987635 988399 + hypothetical protein GC: 43.79%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): T. Kitten gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0985 SSA_0986 SSA_0986 SSA_0986 988413 989141 + choline transporter GC: 46.5%25%3B Transporter classification TC:3.A.1.12.3. Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0986 SSA_0987 SSA_0987 proW proW 989134 990654 + choline ABC transporter permease GC: 43.98%25%3B Transporter classification TC:3.A.1.12.4. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0987 SSA_0988 SSA_0988 SSA_0988 990802 991119 + TfoX domain-containing protein GC: 40.25%25%3B Codon Adaptation Index (CAI): 0.821. Curator(s): T. Kitten gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0988 SSA_0989 SSA_0989 SSA_0989 991211 991876 + transcriptional regulator GC: 47.75%25%3B Codon Adaptation Index (CAI): 0.748. Helix-turn-helix prediction: LysR\AraC. Curator(s): T. Kitten %2C J. Alves gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0989 SSA_0990 SSA_0990 SSA_0990 991873 992610 + hypothetical protein GC: 41.33%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.763. Curator(s): T. Kitten %2C J. Alves gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0990 SSA_0991 SSA_0991 SSA_0991 992671 993432 - deoxyribonuclease GC: 46.85%25%3B Codon Adaptation Index (CAI): 0.777. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0991 SSA_0992 SSA_0992 SSA_0992 993626 994207 + hypothetical protein GC: 43.47%25%3B Codon Adaptation Index (CAI): 0.772. Curator(s): T. Kitten gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0992 SSA_0993 SSA_0993 SSA_0993 994204 994818 + hypothetical protein GC: 36.26%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.79. Curator(s): T. Kitten gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0993 SSA_0994 SSA_0994 SSA_0994 994830 995450 + peptidase E GC: 41.55%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): T. Kitten gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0994 SSA_0995 SSA_0995 SSA_0995 995856 996392 + alpha/beta hydrolase GC: 36.31%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): T. Kitten gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0995 SSA_0996 SSA_0996 SSA_0996 996422 996919 + cGMP-specific phosphodiesterase GC: 43.37%25%3B Codon Adaptation Index (CAI): 0.808. Contains GAF domain%2C involved in signal transduction. Curator(s): T. Kitten %2C J. Alves gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0996 SSA_0997 SSA_0997 dnaX dnaX 996919 998589 + DNA polymerase III subunits gamma and tau catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0997 SSA_0998 SSA_0998 SSA_0998 998627 998818 + hypothetical protein GC: 41.15%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0998 SSA_0999 SSA_0999 birA birA 998871 999806 - biotin--protein ligase catalyzes the formation of biotinyl-5'-AMP%2C also acts as a transcriptional repressor of the biotin operon gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_0999 SSA_1000 SSA_1000 galR galR 999823 1000824 - LacI family transcriptional repressor GC: 47.31%25%3B Codon Adaptation Index (CAI): 0.757. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten %2C J. Alves gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1000 SSA_1001 SSA_1001 msmR msmR 1000907 1001779 - arabinose (multiple sugar metabolism) operon transcriptional regulator GC: 41.01%25%3B Codon Adaptation Index (CAI): 0.746. Helix-turn-helix prediction: AraC. gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1001 SSA_1002 SSA_1002 SSA_1002 1001840 1004002 + alpha-galactosidase GC: 42.39%25%3B Codon Adaptation Index (CAI): 0.767. gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1002 SSA_1003 SSA_1003 SSA_1003 1004015 1005274 + sugar ABC transporter substrate-binding protein GC: 42.54%25%3B Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.784. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1003 SSA_1004 SSA_1004 msmF msmF 1005288 1006154 + sugar ABC transporter permease GC: 41.98%25%3B Transporter classification TC:3.A.1.1.2. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.743. SignalP prediction: Yes (prob. 0.537). gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1004 SSA_1005 SSA_1005 msmG msmG 1006168 1007001 + sugar ABC transporter permease GC: 37.65%25%3B Transporter classification TC:3.A.1.1.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.788. SignalP prediction: Yes (prob. 0.929). gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1005 SSA_1006 SSA_1006 gtfA gtfA 1007216 1008661 + dextransucrase GC: 41.84%25%3B Codon Adaptation Index (CAI): 0.798. gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1006 SSA_1007 SSA_1007 SSA_1007 1008683 1009819 + sugar ABC transporter ATP-binding protein GC: 46%25%3B Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.775. Helix-turn-helix prediction: AraC. gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1007 SSA_1008 SSA_1008 galK galK 1009996 1011174 + galactokinase catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1008 SSA_1009 SSA_1009 galT galT 1011394 1012875 + galactose-1-phosphate uridylyltransferase catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1009 SSA_1010 SSA_1010 galE galE 1012879 1013922 + UDP-glucose 4-epimerase GC: 47.8%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1010 SSA_1011 SSA_1011 SSA_1011 1014274 1014864 + hypothetical protein GC: 46.7%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.747. SignalP prediction: Yes (prob. 0.457). gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1011 SSA_1012 SSA_1012 SSA_1012 1014879 1017374 + phosphoenolpyruvate synthase GC: 47.2%25%3B Codon Adaptation Index (CAI): 0.768. gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1012 SSA_1013 SSA_1013 SSA_1013 1017361 1017993 + phosphatidylserine synthase GC: 49.13%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.783. gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1013 SSA_1014 SSA_1014 SSA_1014 1017986 1018858 + phosphatidylserine decarboxylase GC: 46.85%25%3B Codon Adaptation Index (CAI): 0.748. gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1014 SSA_1015 SSA_1015 ubiA ubiA 1018843 1019742 + prenyltransferase UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones%2C hemes%2C chlorophylls%2C vitamin E%2C and shikonin gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1015 SSA_1016 SSA_1016 SSA_1016 1019742 1022225 + phosphoenolpyruvate synthase GC: 48.35%25%3B Codon Adaptation Index (CAI): 0.78. gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1016 SSA_1017 SSA_1017 SSA_1017 1022212 1023279 + hypothetical protein GC: 44.29%25%3B Codon Adaptation Index (CAI): 0.787. gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1017 SSA_1018 SSA_1018 SSA_1018 1023486 1032629 + Zinc metalloprotease zmpC GC: 45.25%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.781. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1018 SSA_1019 SSA_1019 SSA_1019 1033017 1035437 + collagen-binding surface protein GC: 42.42%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1019 SSA_1020 SSA_1020 SSA_1020 1035697 1036164 + hypothetical protein GC: 37.39%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.789. gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1020 SSA_1021 SSA_1021 SSA_1021 1036284 1037330 + hypothetical protein GC: 47.18%25%3B Codon Adaptation Index (CAI): 0.778. gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1021 SSA_1022 SSA_1022 SSA_1022 1037423 1038538 + group 1 glycosyl transferase GC: 41.94%25%3B Codon Adaptation Index (CAI): 0.771. gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1022 SSA_1023 SSA_1023 SSA_1023 1038551 1041226 + von Willebrand factor A GC: 40.21%25%3B Codon Adaptation Index (CAI): 0.768. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1023 SSA_1024 SSA_1024 amy amy 1041272 1042738 - alpha-amylase converts 1%2C4-alpha-D-glucans to maltodextrin gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1024 SSA_1026 SSA_1026 SSA_1026 1042934 1043677 + multidrig ABC transporter ATPase GC: 43.95%25%3B Transporter classification TC:3.A.1.105.1. Codon Adaptation Index (CAI): 0.791. Curator(s): J. Alves gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1026 SSA_1027 SSA_1027 SSA_1027 1043667 1045304 + hypothetical protein GC: 42.43%25%3B Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.77. Possibly membrane-related. Curator(s): J. Alves gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1027 SSA_1028 SSA_1028 SSA_1028 1045380 1046153 - XRE family transcriptional regulator GC: 42.12%25%3B Codon Adaptation Index (CAI): 0.735. Curator(s): J. Alves gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1028 SSA_1029 SSA_1029 SSA_1029 1046257 1047099 - hypothetical protein GC: 43.53%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves%3B (DegV family) gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1029 SSA_1030 SSA_1030 SSA_1030 1047234 1047809 + TetR family transcriptional regulator GC: 38.54%25%3B Codon Adaptation Index (CAI): 0.778. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1030 SSA_1031 SSA_1031 flaR flaR 1047824 1048345 - topology modulation protein GC: 42.72%25%3B Codon Adaptation Index (CAI): 0.748. gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1031 SSA_1032 SSA_1032 rpsT rpsT 1048403 1048639 - 30S ribosomal protein S20 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1032 SSA_1033 SSA_1033 coaA coaA 1048710 1049630 - pantothenate kinase catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1033 SSA_1034 SSA_1034 SSA_1034 1049725 1050312 + hypothetical protein GC: 43.2%25%3B Codon Adaptation Index (CAI): 0.782. gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1034 SSA_1035 SSA_1035 pdp pdp 1050314 1051591 + pyrimidine-nucleoside phosphorylase Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1035 SSA_1036 SSA_1036 deoC deoC 1051609 1052271 + deoxyribose-phosphate aldolase catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1036 SSA_1037 SSA_1037 cdd cdd 1052258 1052647 + cytidine deaminase Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1037 SSA_1038 SSA_1038 SSA_1038 1052719 1053774 + lipoprotein GC: 41.38%25%3B Codon Adaptation Index (CAI): 0.814. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999). gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1038 SSA_1039 SSA_1039 SSA_1039 1053914 1055449 + sugar ABC transporter ATP-binding protein GC: 43.62%25%3B Transporter classification TC:3.A.1.2.4. Codon Adaptation Index (CAI): 0.813. gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1039 SSA_1040 SSA_1040 SSA_1040 1055442 1056536 + sugar ABC transporter permease GC: 42.19%25%3B Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.996). gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1040 SSA_1041 SSA_1041 SSA_1041 1056538 1057494 + sugar ABC transporter permease GC: 45.25%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.767. SignalP prediction: Yes (prob. 0.992). gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1041 SSA_1042 SSA_1042 SSA_1042 1057599 1058564 - xylanase/chitin deacetylase GC: 42.24%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.774. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1042 SSA_1043 SSA_1043 hom hom 1058705 1059991 + homoserine dehydrogenase catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1043 SSA_1044 SSA_1044 thrB thrB 1059993 1060859 + homoserine kinase catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1044 SSA_1045 SSA_1045 SSA_1045 1060981 1061892 + hypothetical protein GC: 40.79%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.773. gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1045 SSA_1047 SSA_1047 murB murB 1062000 1062905 + UDP-N-acetylenolpyruvoylglucosamine reductase catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1047 SSA_1048 SSA_1048 potA potA 1063087 1064244 + spermidine/putrescine ABC transporter ATP-binding protein GC: 45.85%25%3B Transporter classification TC:3.A.1.11.1. Codon Adaptation Index (CAI): 0.82. gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1048 SSA_1049 SSA_1049 potB potB 1064225 1065031 + spermidine/putrescine ABC transporter transmembrane protein GC: 45.11%25%3B Transporter classification TC:3.A.1.11.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.77. SignalP prediction: Yes (prob. 0.625). gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1049 SSA_1050 SSA_1050 potC potC 1065028 1065801 + spermidine/putrescine ABC transporter permease GC: 42.64%25%3B Transporter classification TC:3.A.1.11.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.787. SignalP prediction: Yes (prob. 0.529)%3B Helix-turn-helix prediction: AraC. gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1050 SSA_1051 SSA_1051 potD potD 1065798 1066868 + spermidine/putrescine ABC transporter substrate-binding protein GC: 42.86%25%3B Transporter classification TC:3.A.1.11.1. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.811. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.929). gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1051 SSA_1052 SSA_1052 SSA_1052 1066936 1067352 - hypothetical protein GC: 42.21%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.787. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.738). gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1052 SSA_1053 SSA_1053 SSA_1053 1067537 1070158 - pyruvate phosphate dikinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1053 SSA_1054 SSA_1054 SSA_1054 1070404 1071033 + hypothetical protein GC: 41.9%25%3B Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1054 SSA_1055 SSA_1055 SSA_1055 1071039 1071857 + hypothetical protein GC: 43.1%25%3B Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1055 SSA_1056 SSA_1056 SSA_1056 1071900 1073810 + Firmicute fructose-1%2C6-bisphosphatase GC: 44.85%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): J. Alves gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1056 SSA_1057 SSA_1057 SSA_1057 1073911 1075053 + class V aminotransferase GC: 45.06%25%3B Codon Adaptation Index (CAI): 0.745. gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1057 SSA_1058 SSA_1058 thiI thiI 1075057 1076271 + thiamine biosynthesis protein ThiI Required for the synthesis of the thiazole moiety gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1058 SSA_1059 SSA_1059 SSA_1059 1076293 1076814 + hypothetical protein GC: 35.82%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.773. SignalP prediction: Yes (prob. 0.593). gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1059 SSA_1060 SSA_1060 SSA_1060 1076905 1077507 + hypothetical protein GC: 33.83%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.75. gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1060 SSA_1061 SSA_1061 rplU rplU 1077732 1078046 + 50S ribosomal protein L21 GC: 40.95%25%3B Codon Adaptation Index (CAI): 0.85. gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1061 SSA_1062 SSA_1062 rpmA rpmA 1078424 1078717 + 50S ribosomal protein L27 involved in the peptidyltransferase reaction during translation gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1062 SSA_1063 SSA_1063 SSA_1063 1078968 1080320 + peptidoglycan binding domain-containing protein GC: 41.39%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999). gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1063 SSA_1064 SSA_1064 SSA_1064 1080415 1081155 - hypothetical protein GC: 40.49%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.761. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves%3B (contains glucan-binding domain) gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1064 SSA_1065 SSA_1065 SSA_1065 1081398 1084190 + Beta-hexosamidase A GC: 45.47%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.766. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1065 SSA_1066 SSA_1066 aliB aliB 1084475 1086436 + peptide ABC transporter GC: 43.07%25%3B Transporter classification TC:3.A.1.5.1. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1066 SSA_1067 SSA_1067 SSA_1067 1086539 1087405 + hypothetical protein GC: 43.25%25%3B Codon Adaptation Index (CAI): 0.766. gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1067 SSA_1068 SSA_1068 SSA_1068 1087495 1088427 + LysR family transcriptional regulator GC: 44.27%25%3B Codon Adaptation Index (CAI): 0.802. Helix-turn-helix prediction: LysR. Curator(s): J. Alves gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1068 SSA_1069 SSA_1069 lspA lspA 1088431 1088898 + lipoprotein signal peptidase lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1069 SSA_1070 SSA_1070 SSA_1070 1088882 1089778 + ribosomal large subunit pseudouridine synthase D GC: 48.72%25%3B Codon Adaptation Index (CAI): 0.782. gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1070 SSA_1072 SSA_1072 proB proB 1089895 1091004 + gamma-glutamyl kinase catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1072 SSA_1073 SSA_1073 proA proA 1091026 1092288 + gamma-glutamyl phosphate reductase Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1073 SSA_1074 SSA_1074 proC proC 1092291 1093094 + pyrroline-5-carboxylate reductase GC: 48.13%25%3B Codon Adaptation Index (CAI): 0.748. gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1074 SSA_1075 SSA_1075 hemN hemN 1093233 1094363 + coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1075 SSA_1076 SSA_1076 SSA_1076 1094367 1095107 + hypothetical protein GC: 44.94%25%3B Codon Adaptation Index (CAI): 0.778. gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1076 SSA_1077 SSA_1077 nagD nagD 1095119 1095889 + N-acetyl-glucosamine matabolism GC: 47.34%25%3B Codon Adaptation Index (CAI): 0.74. gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1077 SSA_1078 SSA_1078 SSA_1078 1095882 1096511 + hypothetical protein GC: 37.3%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.791. SignalP prediction: Yes (prob. 0.549). gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1078 SSA_1079 SSA_1079 SSA_1079 1096525 1097508 + hypothetical protein GC: 37.7%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.79. gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1079 SSA_1080 SSA_1080 fruR fruR 1097678 1098421 + fructose operon transcriptional repressor GC: 41.67%25%3B Codon Adaptation Index (CAI): 0.763. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1080 SSA_1081 SSA_1081 fruB fruB 1098418 1099329 + 1-phosphofructokinase GC: 43.97%25%3B Codon Adaptation Index (CAI): 0.773. gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1081 SSA_1082 SSA_1082 fruA fruA 1099326 1101311 + PTS system fructose specific transporter subunit II ABC GC: 43.96%25%3B Transporter classification TC:4.A.2.1.3. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.786. gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1082 SSA_1083 SSA_1083 SSA_1083 1101438 1101812 + hypothetical protein GC: 38.67%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.818. gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1083 SSA_1084 SSA_1084 SSA_1084 1101815 1102663 + hypothetical protein GC: 43.82%25%3B Codon Adaptation Index (CAI): 0.793. gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1084 SSA_1085 SSA_1085 dapB dapB 1102704 1103471 + dihydrodipicolinate reductase catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1085 SSA_1086 SSA_1086 papS papS 1103468 1104667 + tRNA CCA-pyrophosphorylase catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA%3B these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1086 SSA_1087 SSA_1087 SSA_1087 1104664 1106532 + antibiotic ABC transporter ATPase GC: 45.37%25%3B Transporter classification TC:3.A.1.120.4. Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1087 SSA_1088 SSA_1088 SSA_1088 1107188 1107598 + hypothetical protein GC: 39.9%25%3B Codon Adaptation Index (CAI): 0.733. gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1088 SSA_1089 SSA_1089 SSA_1089 1107567 1107674 + hypothetical protein GC: 25.93%25%3B Codon Adaptation Index (CAI): 0.714. gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1089 SSA_1090 SSA_1090 glcK glcK 1107711 1108670 + glucokinase GC: 46.15%25%3B Codon Adaptation Index (CAI): 0.799. gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1090 SSA_1091 SSA_1091 thyA thyA 1108775 1109614 + thymidylate synthase ThyA%3B catalyzes formation of dTMP and 7%2C8-dihydrofolate from 5%2C10-methylenetetrahydrofolate and dUMP%3B involved in deoxyribonucleotide biosynthesis%3B there are 2 copies in some Bacilli%2C one of which appears to be phage-derived gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1091 SSA_1092 SSA_1092 dfrA dfrA 1109739 1110251 + dihydrofolate reductase GC: 41.33%25%3B Codon Adaptation Index (CAI): 0.831. gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1092 SSA_1093 SSA_1093 clpX clpX 1110476 1111705 + ATP-dependent protease ATP-binding subunit ClpX binds and unfolds substrates as part of the ClpXP protease gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1093 SSA_1094 SSA_1094 engB engB 1111716 1112303 + ribosome biogenesis GTP-binding protein YsxC binds guanine nucleotides%3B in Escherichia coli depletion results in defective cell division and filamentation%3B in Bacillus subtilis this gene is essential gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1094 SSA_1095 SSA_1095 mur2 mur2 1112450 1113148 + peptidoglycan hydrolase GC: 41.63%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.815. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1095 SSA_1096 SSA_1096 mmuM mmuM 1113212 1114159 + homocysteine methyltransferase converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1096 SSA_1098 SSA_1098 SSA_1098 1114274 1115071 + formate/nitrate transporter GC: 42.48%25%3B Transporter classification TC:2.A.44.3.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.772. gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1098 SSA_1099 SSA_1099 SSA_1099 1115501 1119934 + calcium binding hemolysin-like protein GC: 40.78%25%3B Codon Adaptation Index (CAI): 0.779. Curator(s): J. Alves gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1099 SSA_1100 SSA_1100 SSA_1100 1120013 1122148 + hemolysin exporter%2C ATPase component GC: 41.01%25%3B Transporter classification TC:3.A.1.109.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.765. Curator(s): J. Alves gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1100 SSA_1101 SSA_1101 SSA_1101 1122051 1123259 + multidrug resistance efflux pump/hemolysin secretion transmembrane protein GC: 36.81%25%3B Transporter classification TC:8.A.1.3.1. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.735. Curator(s): J. Alves gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1101 SSA_1102 SSA_1102 SSA_1102 1123526 1123867 + hypothetical protein GC: 35.38%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.815. Curator(s): J. Alves gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1102 SSA_1103 SSA_1103 SSA_1103 1123973 1124599 + hypothetical protein GC: 33.33%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.781. SignalP prediction: Yes (prob. 0.502). gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1103 SSA_1104 SSA_1104 rplJ rplJ 1124883 1125383 + 50S ribosomal protein L10 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1104 SSA_1105 SSA_1105 rplL rplL 1125457 1125825 + 50S ribosomal protein L7/L12 present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1105 SSA_1106 SSA_1106 iga iga 1126114 1131738 + IgA-specific metalloendopeptidase GC: 40.46%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1106 SSA_1107 SSA_1107 SSA_1107 1132108 1133844 + Lipid/multidrug/protein-type ABC exporter%2C ATP binding/membrane-spanning protein GC: 46.86%25%3B Transporter classification TC:3.A.1.106.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.777. gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1107 SSA_1109 SSA_1109 SSA_1109 1133858 1135636 + ABC transporter ATP-binding protein/permease GC: 44.29%25%3B Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.802. SignalP prediction: Yes (prob. 0.483)%3B Helix-turn-helix prediction: AraC. gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1109 SSA_1110 SSA_1110 SSA_1110 1135691 1136245 + hypothetical protein GC: 37.84%25%3B Codon Adaptation Index (CAI): 0.794. gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1110 SSA_1111 SSA_1111 brnQ brnQ 1136672 1138000 + branched chain amino acid ABC transporter carrier protein GC: 42.81%25%3B Transporter classification TC:2.A.26.1.1. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.97). gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1111 SSA_1112 SSA_1112 SSA_1112 1138221 1139798 + cell wall surface anchor family protein GC: 41.25%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.793. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1112 SSA_1113 SSA_1113 SSA_1113 1139882 1140580 + two-component response transcriptional regulator GC: 41.2%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): J. Alves gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1113 SSA_1114 SSA_1114 SSA_1114 1140577 1141611 + histidine kinase GC: 40.77%25%3B Transporter classification TC:2.A.21.9.2. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.747. SignalP prediction: Yes (prob. 0.727). gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1114 SSA_1115 SSA_1115 SSA_1115 1141754 1142464 + cytochrome C-type biogenesis protein GC: 43.88%25%3B Transporter classification TC:5.A.1.2.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.744. SignalP prediction: Yes (prob. 0.5). gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1115 SSA_1116 SSA_1116 SSA_1116 1142492 1142812 + hypothetical protein GC: 37.69%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.829. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.996). gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1116 SSA_1117 SSA_1117 SSA_1117 1142883 1143446 + hypothetical protein GC: 40.6%25%3B Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.995). gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1117 SSA_1118 SSA_1118 SSA_1118 1143462 1144571 + peptide methionine sulfoxide reductase GC: 43.24%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.811. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.894). gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1118 SSA_1119 SSA_1119 SSA_1119 1144631 1145365 + two-component response transcriptional regulator GC: 42.04%25%3B Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1119 SSA_1120 SSA_1120 SSA_1120 1145362 1147065 + two-component sensor kinase GC: 44.25%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.793. SignalP prediction: Yes (prob. 0.513)%3B Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1120 SSA_1121 SSA_1121 SSA_1121 1147289 1147996 + cytochrome C-type biogenesis protein GC: 41.53%25%3B Transporter classification TC:5.A.1.2.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.78. gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1121 SSA_1122 SSA_1122 SSA_1122 1148011 1148586 + thioredoxin family protein GC: 43.06%25%3B Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.998). gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1122 SSA_1124 SSA_1124 SSA_1124 1148637 1149881 - oxidoreductase GC: 43.61%25%3B Codon Adaptation Index (CAI): 0.801. gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1124 SSA_1125 SSA_1125 SSA_1125 1149899 1150504 - NADPH-dependent FMN reductase GC: 40.92%25%3B Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1125 SSA_1126 SSA_1126 apbE apbE 1150677 1151612 - thiamine biosynthesis lipoprotein GC: 45.51%25%3B Codon Adaptation Index (CAI): 0.761. gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1126 SSA_1127 SSA_1127 nox nox 1151871 1153247 + H2O-forming NADH dehydrogenase GC: 40.38%25%3B Codon Adaptation Index (CAI): 0.812. Curator(s): J. Alves gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1127 SSA_1128 SSA_1128 SSA_1128 1153390 1154946 + voltage gated chloride channel EriC GC: 46.11%25%3B Transporter classification TC:1.A.11.5.1. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.775. Curator(s): J. Alves gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1128 SSA_1129 SSA_1129 SSA_1129 1155065 1155937 + periplasmic iron transport lipoprotein GC: 43.76%25%3B Codon Adaptation Index (CAI): 0.777. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1129 SSA_1130 SSA_1130 SSA_1130 1155942 1157150 + Iron-dependent peroxidase GC: 47.39%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.752)%3B Curator(s): J. Alves gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1130 SSA_1131 SSA_1131 SSA_1131 1157323 1158828 + high-affinity Fe 2+/Pb2+ permease GC: 45.02%25%3B Transporter classification TC:9.A.17.1.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.773. gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1131 SSA_1132 SSA_1132 tatC tatC 1158785 1159537 + TatC%2C sec-independent protein translocase GC: 43.82%25%3B Transporter classification TC:2.A.64.1.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.773. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.89)%3B Curator(s): J. Alves gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1132 SSA_1133 SSA_1133 tatA tatA 1159537 1159725 + TatA%2C sec-independent protein secretion pathway component GC: 42.86%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.769. Curator(s): J. Alves gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1133 SSA_1134 SSA_1134 xpt xpt 1159768 1160376 + xanthine phosphoribosyltransferase Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1134 SSA_1135 SSA_1135 norM norM 1160492 1161835 + Na+-driven multidrug efflux pump GC: 42.26%25%3B Transporter classification TC:2.A.66.1.3. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.765. SignalP prediction: Yes (prob. 0.525)%3B Helix-turn-helix prediction: AraC. gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1135 SSA_1136 SSA_1136 SSA_1136 1162064 1164307 + ATPases with chaperone activity%2C ATP-binding subunit GC: 44.83%25%3B Codon Adaptation Index (CAI): 0.774. gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1136 SSA_1137 SSA_1137 pdhD pdhD 1164515 1165855 + dihydrolipoamide dehydrogenase GC: 44.07%25%3B Codon Adaptation Index (CAI): 0.774. gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1137 SSA_1138 SSA_1138 pdhA pdhA 1165871 1166944 + pyruvate dehydrogenase%2C TPP-dependent E1 component alpha-subunit GC: 45.34%25%3B Codon Adaptation Index (CAI): 0.787. gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1138 SSA_1139 SSA_1139 pdhB pdhB 1166963 1167994 + pyruvate dehydrogenase E1 component beta subunit GC: 45.83%25%3B Codon Adaptation Index (CAI): 0.796. gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1139 SSA_1140 SSA_1140 pdhC pdhC 1168008 1169267 + branched-chain alpha-keto acid dehydrogenase subunit E2 GC: 46.9%25%3B Codon Adaptation Index (CAI): 0.759. gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1140 SSA_1141 SSA_1141 SSA_1141 1169511 1172125 + Transcriptional antiterminator (pseudogene)%3B GC: 37.06%25. Codon Adaptation Index (CAI): 0.7. Helix-turn-helix prediction: AraC. GO:0006355 (Process: regulation of transcription%2C DNA-dependent)%2C GO:0017111 (Function: nucleoside-triphosphatase activity). Curator(s): J. Alves gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1141 SSA_1143 SSA_1143 norM2 norM2 1172238 1173587 - Na+-driven multidrug efflux pump GC: 44.67%25%3B Transporter classification TC:2.A.66.1.9. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.603)%3B Curator(s): J. Alves gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1143 SSA_1144 SSA_1144 SSA_1144 1173739 1175700 - beta-N-acetylhexosaminidase GC: 42.05%25%3B Codon Adaptation Index (CAI): 0.789. gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1144 SSA_1145 SSA_1145 SSA_1145 1175784 1176221 - hypothetical protein GC: 36.07%25%3B Codon Adaptation Index (CAI): 0.779. gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1145 SSA_1146 SSA_1146 ptcA ptcA 1176593 1176925 + phosphotransferase system cellobiose-specific component IIA GC: 39.94%25%3B Transporter classification TC:4.A.3.2.1. Codon Adaptation Index (CAI): 0.744. gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1146 SSA_1147 SSA_1147 SSA_1147 1176922 1177212 + Beta-glucosides PTS%2C EIIB GC: 36.77%25%3B Transporter classification TC:4.A.3.2.2. Codon Adaptation Index (CAI): 0.766. gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1147 SSA_1148 SSA_1148 SSA_1148 1177226 1178533 + Beta-glucosides PTS%2C EIIC GC: 40.29%25%3B Transporter classification TC:4.A.3.2.2. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.769. LipoP prediction: SpI. gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1148 SSA_1149 SSA_1149 SSA_1149 1178539 1179936 + glycosyl hydrolase family protein GC: 39.77%25%3B Codon Adaptation Index (CAI): 0.78. gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1149 SSA_1150 SSA_1150 xylH xylH 1179984 1180166 - 4-oxalocrotonate tautomerase 4-OT%3B member of subfamily 5%3B forms a dimer%3B the function in the Escherichia coli cell is unknown gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1150 SSA_1151 SSA_1151 tdk tdk 1180290 1180862 + thymidine kinase catalyzes the formation of thymidine 5'-phosphate from thymidine gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1151 SSA_1152 SSA_1152 prfA prfA 1180899 1181978 + peptide chain release factor 1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1152 SSA_1153 SSA_1153 hemK hemK 1181978 1182808 + HemK protein GC: 46.09%25%3B Codon Adaptation Index (CAI): 0.75. gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1153 SSA_1154 SSA_1154 SSA_1154 1182801 1183391 + hypothetical protein GC: 44.67%25%3B Codon Adaptation Index (CAI): 0.763. gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1154 SSA_1155 SSA_1155 glyA glyA 1183438 1184700 + serine hydroxymethyltransferase catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1155 SSA_1156 SSA_1156 SSA_1156 1184702 1185676 + hypothetical protein GC: 41.54%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): J. Alves gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1156 SSA_1157 SSA_1157 SSA_1157 1185676 1186278 + PvaA-like protein GC: 43.12%25%3B Codon Adaptation Index (CAI): 0.772. gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1157 SSA_1158 SSA_1158 SSA_1158 1186393 1187247 + hypothetical protein GC: 41.05%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.794. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.915)%3B Helix-turn-helix prediction: LysR. gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1158 SSA_1161 SSA_1161 SSA_1161 1187523 1188503 + hypothetical protein GC: 43.43%25%3B Codon Adaptation Index (CAI): 0.774. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves%3B possibly secreted gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1161 SSA_1162 SSA_1162 SSA_1162 1188579 1189340 - fimbrial assembly protein fimC GC: 40.42%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.754. gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1162 SSA_1163 SSA_1163 guaA guaA 1189426 1190988 - GMP synthase contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1163 SSA_1164 SSA_1164 SSA_1164 1191097 1191228 - hypothetical protein GC: 31.82%25%3B Codon Adaptation Index (CAI): 0.837. SignalP prediction: Yes (prob. 0.602). gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1164 SSA_1165 SSA_1165 SSA_1165 1191227 1191925 + GntR family transcriptional regulator GC: 46.78%25%3B Codon Adaptation Index (CAI): 0.775. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1165 SSA_1166 SSA_1166 ylxM ylxM 1192069 1192410 + DNA-binding protein GC: 41.52%25%3B Codon Adaptation Index (CAI): 0.758. Helix-turn-helix prediction: AraC. gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1166 SSA_1167 SSA_1167 ffh ffh 1192657 1194231 + SRP54%2C signal recognition particle GTPase protein GC: 46.54%25%3B Transporter classification TC:3.A.5.1.1. Codon Adaptation Index (CAI): 0.814. Curator(s): J. Alves gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1167 SSA_1168 SSA_1168 SSA_1168 1194291 1195982 + hypothetical protein GC: 30.14%25%3B Codon Adaptation Index (CAI): 0.756. gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1168 SSA_1169 SSA_1169 SSA_1169 1196091 1196906 + hypothetical protein GC: 40.56%25%3B Codon Adaptation Index (CAI): 0.776. gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1169 SSA_1170 SSA_1170 SSA_1170 1197023 1198051 - hypothetical protein GC: 26.92%25%3B Codon Adaptation Index (CAI): 0.77. gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1170 SSA_1171 SSA_1171 xerS xerS 1198228 1199298 + site-specific tyrosine recombinase XerS site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerS gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1171 SSA_1172 SSA_1172 SSA_1172 1199378 1200016 - hypothetical protein GC: 41.16%25%3B Codon Adaptation Index (CAI): 0.778. gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1172 SSA_1173 SSA_1173 lplA lplA 1200182 1201171 - lipoate protein ligase A GC: 42.32%25%3B Codon Adaptation Index (CAI): 0.794. gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1173 SSA_1174 SSA_1174 acoL acoL 1201238 1202944 - dihydrolipoamide dehydrogenase GC: 45.81%25%3B Codon Adaptation Index (CAI): 0.808. gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1174 SSA_1175 SSA_1175 acoC acoC 1203023 1204066 - dihydrolipoamide acetyltransferase unlike PdhC proteins from other organisms%2C some Mycoplasma lack an N-terminal lipoyl domain%3B in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1175 SSA_1176 SSA_1176 acoB acoB 1204527 1205495 - acetoin dehydrogenase%2C E1 component subunit beta GC: 46.96%25%3B Codon Adaptation Index (CAI): 0.795. gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1176 SSA_1178 SSA_1178 acoA acoA 1205539 1206507 - acetoin dehydrogenase%2C E1 component subunit alpha GC: 44.58%25%3B Codon Adaptation Index (CAI): 0.787. gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1178 SSA_1179 SSA_1179 SSA_1179 1206730 1207896 - carbamoylphosphate synthase large subunit / biotin carboxylase GC: 43.27%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): J. Alves gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1179 SSA_1180 SSA_1180 SSA_1180 1207909 1208649 - hypothetical protein GC: 45.75%25%3B Codon Adaptation Index (CAI): 0.802. gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1180 SSA_1181 SSA_1181 SSA_1181 1208682 1209506 - alpha/beta hydrolase GC: 43.39%25%3B Codon Adaptation Index (CAI): 0.797. gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1181 SSA_1182 SSA_1182 gid gid 1209622 1210956 - tRNA (uracil-5-)-methyltransferase Gid TrmFO%3B Gid%3B glucose-inhibited division protein%3B similar to GidA%3B the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant%3B modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1182 SSA_1183 SSA_1183 SSA_1183 1211058 1211543 - hypothetical protein GC: 42.8%25%3B Codon Adaptation Index (CAI): 0.794. gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1183 SSA_1184 SSA_1184 topA topA 1211602 1213695 - DNA topoisomerase I catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1184 SSA_1185 SSA_1185 smf smf 1213780 1214622 - DNA processing Smf protein GC: 42.11%25%3B Codon Adaptation Index (CAI): 0.781. gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1185 SSA_1186 SSA_1186 SSA_1186 1214746 1215309 - acetyltransferase GC: 43.44%25%3B Codon Adaptation Index (CAI): 0.807. gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1186 SSA_1187 SSA_1187 licT licT 1215285 1216127 - BglG family transcriptional antiterminator GC: 41.04%25%3B Codon Adaptation Index (CAI): 0.788. Curator(s): J. Alves gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1187 SSA_1188 SSA_1188 rnhB rnhB 1216145 1216909 - ribonuclease HII RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1188 SSA_1189 SSA_1189 rbgA rbgA 1216896 1217747 - ribosomal biogenesis GTPase essential GTPase%3B functions in ribosome assembly%3B binds a unique part of the 23S rRNA%3B interacts with ribosomal protein L25(Ctc) gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1189 SSA_1190 SSA_1190 SSA_1190 1217889 1218227 - hypothetical protein GC: 42.48%25%3B Codon Adaptation Index (CAI): 0.815. gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1190 SSA_1191 SSA_1191 SSA_1191 1218312 1218413 - hypothetical protein GC: 25.49%25%3B Codon Adaptation Index (CAI): 0.828. gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1191 SSA_1192 SSA_1192 SSA_1192 1218525 1219124 - hypothetical protein GC: 34%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.771. gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1192 SSA_1193 SSA_1193 dapA dapA 1219185 1220120 - dihydrodipicolinate synthase catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1193 SSA_1194 SSA_1194 asd asd 1220203 1221279 - aspartate-semialdehyde dehydrogenase catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1194 SSA_1196 SSA_1196 SSA_1196 1221618 1222142 - acetyltransferase GC: 38.1%25%3B Codon Adaptation Index (CAI): 0.763. gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1196 SSA_1197 SSA_1197 alkD alkD 1222139 1222789 - DNA alkylation repair protein GC: 42.09%25%3B Codon Adaptation Index (CAI): 0.754. gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1197 SSA_1198 SSA_1198 SSA_1198 1222793 1223404 - twitching mobility protein PilT GC: 41.83%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.809. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.774). gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1198 SSA_1199 SSA_1199 SSA_1199 1223401 1224048 - phosphinothricin acetyltransferase GC: 42.75%25%3B Codon Adaptation Index (CAI): 0.742. gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1199 SSA_1200 SSA_1200 fhs fhs 1224011 1225681 - formate--tetrahydrofolate ligase catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1200 SSA_1201 SSA_1201 SSA_1201 1225895 1226578 + phosphopantothenate--cysteine ligase GC: 43.42%25%3B Codon Adaptation Index (CAI): 0.768. gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1201 SSA_1202 SSA_1202 dfp dfp 1226590 1227141 + phosphopantothenoylcysteine decarboxylase decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine. gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1202 SSA_1203 SSA_1203 SSA_1203 1227125 1227688 + hypothetical protein GC: 42.38%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.768. SignalP prediction: Yes (prob. 0.45). gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1203 SSA_1204 SSA_1204 pgm pgm 1227927 1229645 + phosphoglucomutase GC: 44.5%25%3B Codon Adaptation Index (CAI): 0.821. Helix-turn-helix prediction: AraC. gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1204 SSA_1205 SSA_1205 bta bta 1229770 1230117 + hypothetical protein GC: 42.24%25%3B Codon Adaptation Index (CAI): 0.826. gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1205 SSA_1206 SSA_1206 mutY mutY 1230161 1231321 - A/G-specific adenine glycosylase GC: 43.84%25%3B Codon Adaptation Index (CAI): 0.806. gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1206 SSA_1207 SSA_1207 eutD eutD 1231387 1232364 - phosphotransacetylase in Salmonella this enzyme is required for ethanolamine catabolism%3B has higher affinity for CoA than Pta gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1207 SSA_1208 SSA_1208 SSA_1208 1232388 1233275 - 23S rRNA pseudouridine synthase GC: 43.13%25%3B Codon Adaptation Index (CAI): 0.782. gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1208 SSA_1209 SSA_1209 ppnK ppnK 1233272 1234120 - inorganic polyphosphate/ATP-NAD kinase catalyzes the phosphorylation of NAD to NADP gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1209 SSA_1210 SSA_1210 SSA_1210 1234074 1234745 - GTP pyrophosphokinase GC: 43.45%25%3B Codon Adaptation Index (CAI): 0.805. gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1210 SSA_1211 SSA_1211 SSA_1211 1234835 1235404 + hypothetical protein GC: 40.7%25%3B Codon Adaptation Index (CAI): 0.764. gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1211 SSA_1212 SSA_1212 prs prs 1235541 1236497 + ribose-phosphate pyrophosphokinase catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1212 SSA_1213 SSA_1213 SSA_1213 1236430 1237620 + pyridoxal-phosphate dependent aminotransferase GC: 42.74%25%3B Codon Adaptation Index (CAI): 0.761. gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1213 SSA_1214 SSA_1214 SSA_1214 1237622 1237969 + hypothetical protein GC: 36.78%25%3B Codon Adaptation Index (CAI): 0.829. Curator(s): J. Alves gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1214 SSA_1215 SSA_1215 SSA_1215 1238086 1238307 + hypothetical protein GC: 43.69%25%3B Codon Adaptation Index (CAI): 0.757. gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1215 SSA_1216 SSA_1216 SSA_1216 1238432 1239079 + redox-sensing transcriptional repressor Rex modulates transcription in response to the NADH/NAD(+) redox state gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1216 SSA_1217 SSA_1217 SSA_1217 1239104 1239796 + hypothetical protein GC: 41.56%25%3B Codon Adaptation Index (CAI): 0.795. gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1217 SSA_1218 SSA_1218 radC radC 1239866 1240549 - DNA repair protein RadC Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1218 SSA_1219 SSA_1219 srtA srtA 1240672 1241427 - sortase GC: 40.08%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.658). gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1219 SSA_1220 SSA_1220 gyrA gyrA 1241442 1243922 - DNA gyrase subunit A negatively supercoils closed circular double-stranded DNA gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1220 SSA_1221 SSA_1221 ldh ldh 1244096 1245082 + L-lactate dehydrogenase Converts (S)-lactate and NAD(+) to pyruvate and NADH gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1221 SSA_1222 SSA_1222 SSA_1222 1245128 1245544 - NTP pyrophosphohydrolases including oxidative damage repair enzymes GC: 38.85%25%3B Codon Adaptation Index (CAI): 0.778. gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1222 SSA_1223 SSA_1223 rpsA rpsA 1245757 1246962 - 30S ribosomal protein S1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1223 SSA_1224 SSA_1224 SSA_1224 1247341 1247571 - hypothetical protein GC: 33.77%25%3B Codon Adaptation Index (CAI): 0.821. gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1224 SSA_1225 SSA_1225 ilvE ilvE 1247679 1248698 - branched-chain amino acid aminotransferase catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1225 SSA_1226 SSA_1226 parC parC 1248873 1251323 - DNA topoisomerase IV subunit A decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1226 SSA_1227 SSA_1227 SSA_1227 1251569 1252387 - aminoglycoside adenylyltransferase GC: 47.62%25%3B Codon Adaptation Index (CAI): 0.747. gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1227 SSA_1229 SSA_1229 SSA_1229 1252404 1252511 - hypothetical protein GC: 39.81%25%3B Codon Adaptation Index (CAI): 0.755. gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1229 SSA_1230 SSA_1230 SSA_1230 1252702 1253448 - hypothetical protein GC: 48.73%25%3B Codon Adaptation Index (CAI): 0.77. gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1230 SSA_1231 SSA_1231 SSA_1231 1253739 1254848 - hypothetical protein GC: 30%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.715. Curator(s): J. Alves gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1231 SSA_1232 SSA_1232 parE parE 1254896 1256845 - DNA topoisomerase IV subunit B decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1232 SSA_1233 SSA_1233 SSA_1233 1257036 1257686 + glycerol-3-phosphate acyltransferase PlsY involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsX gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1233 SSA_1234 SSA_1234 SSA_1234 1257726 1259885 - 5'-nucleotidase GC: 47.41%25%3B Codon Adaptation Index (CAI): 0.789. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1234 SSA_1235 SSA_1235 pyrC pyrC 1260049 1261317 - dihydroorotase catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1235 SSA_1236 SSA_1236 mutX mutX 1261330 1261794 - Mutator protein GC: 46.24%25%3B Codon Adaptation Index (CAI): 0.785. gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1236 SSA_1237 SSA_1237 ung ung 1261803 1262456 - uracil-DNA glycosylase Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1237 SSA_1238 SSA_1238 SSA_1238 1262492 1263244 - hypothetical protein GC: 43.69%25%3B Codon Adaptation Index (CAI): 0.806. gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1238 SSA_1239 SSA_1239 SSA_1239 1263241 1264779 - hypothetical protein GC: 41.91%25%3B Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.766. gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1239 SSA_1240 SSA_1240 pyrE pyrE 1264891 1265520 - orotate phosphoribosyltransferase involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1240 SSA_1241 SSA_1241 pyrF pyrF 1265599 1266291 - orotidine 5'-phosphate decarboxylase type 1 subfamily%3B involved in last step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate to UMP and carbon dioxide%3B OMP decarboxylase%3B OMPDCase%3B OMPdecase gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1241 SSA_1242 SSA_1242 pyrD pyrD 1266538 1267476 - dihydroorotate dehydrogenase 1B catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%2C using a flavin nucleotide as an essential cofactor%3B subclass 1B is a heterotetramer consisting of two PyrDB subunits%2C similar to the PyrDA subunits and two PyrK subunits gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1242 SSA_1243 SSA_1243 pyrK pyrK 1267488 1268294 - dihydroorotate dehydrogenase electron transfer subunit responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1243 SSA_1244 SSA_1244 SSA_1244 1268555 1268794 - hypothetical protein GC: 38.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.742. SignalP prediction: Yes (prob. 0.456). gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1244 SSA_1245 SSA_1245 cpsY cpsY 1268862 1269770 + LysR family transcriptional regulator GC: 44.55%25%3B Codon Adaptation Index (CAI): 0.758. Helix-turn-helix prediction: LysR. Possible capsular polysaccharide biosynthesis regulator. Curator(s): J. Alves gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1245 SSA_1246 SSA_1246 SSA_1246 1269888 1271315 - hypothetical protein GC: 33.05%25%3B Codon Adaptation Index (CAI): 0.786. gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1246 SSA_1247 SSA_1247 SSA_1247 1271312 1272448 - hypothetical protein GC: 37.64%25%3B Codon Adaptation Index (CAI): 0.798. gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1247 SSA_1248 SSA_1248 SSA_1248 1272445 1273353 - hypothetical protein GC: 38.5%25%3B Codon Adaptation Index (CAI): 0.783. gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1248 SSA_1249 SSA_1249 SSA_1249 1273365 1274075 - hypothetical protein GC: 37.13%25%3B Codon Adaptation Index (CAI): 0.817. SignalP prediction: Yes (prob. 0.597). gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1249 SSA_1250 SSA_1250 SSA_1250 1274072 1274602 - hypothetical protein GC: 32.2%25%3B Codon Adaptation Index (CAI): 0.764. Possibly involved in DNA repair. Curator(s): J. Alves gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1250 SSA_1251 SSA_1251 SSA_1251 1274583 1276880 - HD superfamily hydrolase GC: 40.86%25%3B Codon Adaptation Index (CAI): 0.785. Curator(s): J. Alves gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1251 SSA_1252 SSA_1252 SSA_1252 1276861 1277595 - hypothetical protein GC: 45.31%25%3B Codon Adaptation Index (CAI): 0.706. Helix-turn-helix prediction: AraC. gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1252 SSA_1253 SSA_1253 SSA_1253 1281066 1281335 - hypothetical protein GC: 34.07%25%3B Codon Adaptation Index (CAI): 0.753. gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1253 SSA_1254 SSA_1254 SSA_1254 1281332 1281574 - hypothetical protein GC: 40.33%25%3B Codon Adaptation Index (CAI): 0.743. gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1254 SSA_1255 SSA_1255 SSA_1255 1281546 1282334 - hypothetical protein GC: 38.02%25%3B Codon Adaptation Index (CAI): 0.749. Helix-turn-helix prediction: AraC. Possibly involved in DNA repair. gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1255 SSA_1256 SSA_1256 SSA_1256 1282447 1283184 - NAD-dependent deacetylase Modulates the activities of several enzymes which are inactive in their acetylated form gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1256 SSA_1257 SSA_1257 SSA_1257 1283196 1283957 - hypothetical protein GC: 43.04%25%3B Codon Adaptation Index (CAI): 0.748. Curator(s): J. Alves gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1257 SSA_1258 SSA_1258 deoD deoD 1283948 1284742 - purine nucleoside phosphorylase catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1258 SSA_1259 SSA_1259 punA punA 1285000 1285812 - purine nucleoside phosphorylase catalyzes the formation of a purine and ribose phosphate from a purine nucleoside%3B in E. coli this enzyme functions in xanthosine degradation gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1259 SSA_1260 SSA_1260 deoB deoB 1285842 1287053 - phosphopentomutase catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1260 SSA_1261 SSA_1261 rpiA rpiA 1287067 1287744 - ribose-5-phosphate isomerase A Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1261 SSA_1262 SSA_1262 trmE trmE 1287922 1289295 + tRNA modification GTPase TrmE in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1262 SSA_1264 SSA_1264 SSA_1264 1289395 1290132 - hypothetical protein GC: 40.65%25%3B Codon Adaptation Index (CAI): 0.791. gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1264 SSA_1265 SSA_1265 rplS rplS 1290274 1290657 - 50S ribosomal protein L19 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1265 SSA_1266 SSA_1266 crcB1 crcB1 1290740 1291090 - camphor resistance protein CrcB may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1266 SSA_1267 SSA_1267 crcB2 crcB2 1291063 1291437 - camphor resistance protein CrcB may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1267 SSA_1268 SSA_1268 aroH aroH 1291437 1291700 - hypothetical protein GC: 39.02%25%3B Codon Adaptation Index (CAI): 0.767. gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1268 SSA_1269 SSA_1269 SSA_1269 1292060 1293442 - hypothetical protein GC: 45.41%25%3B Codon Adaptation Index (CAI): 0.792. gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1269 SSA_1270 SSA_1270 flaV flaV 1293566 1294006 - flavodoxin An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1270 SSA_1271 SSA_1271 SSA_1271 1294112 1295047 + hypothetical protein GC: 46.15%25%3B Codon Adaptation Index (CAI): 0.775. gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1271 SSA_1272 SSA_1272 rpmE2 rpmE2 1295155 1295397 + 50S ribosomal protein L31 RpmE2%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster do not have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1272 SSA_1274 SSA_1274 SSA_1274 1295607 1297544 - hypothetical protein GC: 39.32%25%3B Codon Adaptation Index (CAI): 0.804. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1274 SSA_1275 SSA_1275 SSA_1275 1297598 1297696 - hypothetical protein GC: 34.34%25%3B Codon Adaptation Index (CAI): 0.823. gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1275 SSA_1276 SSA_1276 SSA_1276 1298246 1298536 - hypothetical protein GC: 43.64%25%3B Codon Adaptation Index (CAI): 0.762. gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1276 SSA_1277 SSA_1277 SSA_1277 1298566 1299306 - D-alanyl-D-alanine carboxypeptidase GC: 42.91%25%3B Codon Adaptation Index (CAI): 0.784. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1277 SSA_1278 SSA_1278 SSA_1278 1299653 1299967 - rhodanese-like domain-containing protein GC: 41.27%25%3B Codon Adaptation Index (CAI): 0.778. gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1278 SSA_1279 SSA_1279 SSA_1279 1299960 1300922 - oxidoreductase GC: 47.14%25%3B Codon Adaptation Index (CAI): 0.756. gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1279 SSA_1280 SSA_1280 SSA_1280 1301198 1301686 - hypothetical protein GC: 41.51%25%3B Codon Adaptation Index (CAI): 0.8. gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1280 SSA_1281 SSA_1281 SSA_1281 1301698 1302282 - uracil-DNA glycosylase GC: 43.08%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1281 SSA_1282 SSA_1282 pepV pepV 1302336 1303742 - dipeptidase PepV divalent metal ion-dependent extracellular dipeptidase%3B able to hydrolyze a broad range of dipeptides but no tri-%2C tetra-%2C or larger oligopeptides%3B differences in the amino acid specificity of the cleavage site varies between species%3B similar to succinyl-diaminopimelate desuccinylases gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1282 SSA_1283 SSA_1283 nrd nrd 1303812 1304426 - nitroreductase GC: 42.76%25%3B Codon Adaptation Index (CAI): 0.81. gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1283 SSA_1284 SSA_1284 SSA_1284 1304536 1305069 - hypothetical protein GC: 32.02%25%3B Codon Adaptation Index (CAI): 0.757. Curator(s): J. Alves gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1284 SSA_1285 SSA_1285 SSA_1285 1305083 1305559 - hypothetical protein GC: 28.51%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1285 SSA_1286 SSA_1286 SSA_1286 1305849 1306334 - hypothetical protein GC: 29.22%25%3B Codon Adaptation Index (CAI): 0.751. Curator(s): J. Alves gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1286 SSA_1287 SSA_1287 SSA_1287 1306345 1306827 - hypothetical protein GC: 29.61%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): J. Alves gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1287 SSA_1288 SSA_1288 SSA_1288 1307186 1307668 - hypothetical protein GC: 30.23%25%3B Codon Adaptation Index (CAI): 0.74. Curator(s): J. Alves gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1288 SSA_1289 SSA_1289 SSA_1289 1307999 1308475 - hypothetical protein GC: 29.14%25%3B Codon Adaptation Index (CAI): 0.776. Curator(s): J. Alves gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1289 SSA_1291 SSA_1291 SSA_1291 1309081 1311192 - hypothetical protein GC: 43.75%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): J. Alves gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1291 SSA_1292 SSA_1292 SSA_1292 1311189 1311668 - hypothetical protein GC: 42.71%25%3B Codon Adaptation Index (CAI): 0.76. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1292 SSA_1293 SSA_1293 SSA_1293 1311644 1312339 - hypothetical protein GC: 39.22%25%3B Codon Adaptation Index (CAI): 0.739. Curator(s): J. Alves gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1293 SSA_1294 SSA_1294 SSA_1294 1312336 1312671 - hypothetical protein GC: 36.9%25%3B Codon Adaptation Index (CAI): 0.792. Curator(s): J. Alves gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1294 SSA_1296 SSA_1296 SSA_1296 1312672 1313103 - hypothetical protein GC: 36.81%25%3B Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1296 SSA_1297 SSA_1297 uvrC uvrC 1313231 1315066 - excinuclease ABC subunit C The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1297 SSA_1298 SSA_1298 malX malX 1315431 1316687 + maltose/maltodextrin ABC transporter sugar-binding protein MalX GC: 42.32%25%3B Transporter classification TC:3.A.1.1.6. Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1298 SSA_1299 SSA_1299 malF malF 1316769 1318127 + maltose/maltodextrin ABC transport system GC: 44.52%25%3B Transporter classification TC:3.A.1.1.6. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.76. gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1299 SSA_1300 SSA_1300 SSA_1300 1318127 1318963 + maltose ABC transporter permease GC: 40.74%25%3B Transporter classification TC:3.A.1.1.6. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.753. SignalP prediction: Yes (prob. 0.98). gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1300 SSA_1301 SSA_1301 SSA_1301 1319100 1321661 - hypothetical protein GC: 44.26%25%3B Codon Adaptation Index (CAI): 0.785. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.997)%3B Curator(s): J. Alves gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1301 SSA_1302 SSA_1302 trmD trmD 1321852 1322574 - tRNA (guanine-N(1)-)-methyltransferase methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1302 SSA_1303 SSA_1303 rimM rimM 1322564 1323082 - 16S rRNA-processing protein RimM Essential for efficient processing of 16S rRNA gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1303 SSA_1304 SSA_1304 SSA_1304 1323177 1323539 - hypothetical protein GC: 49.04%25%3B Codon Adaptation Index (CAI): 0.786. gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1304 SSA_1305 SSA_1305 SSA_1305 1323615 1324169 - hypothetical protein GC: 41.8%25%3B Codon Adaptation Index (CAI): 0.777. gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1305 SSA_1306 SSA_1306 trkA2 trkA2 1324335 1325000 - Trk transporter NAD+ binding protein-K+ transport GC: 46.7%25%3B Transporter classification TC:2.A.38.4.4. Codon Adaptation Index (CAI): 0.784. gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1306 SSA_1307 SSA_1307 trkH2 trkH2 1325011 1326360 - Trk transporter membrane-spanning protein-K+ transport GC: 45.33%25%3B Transporter classification TC:2.A.38.4.3. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.771. SignalP prediction: Yes (prob. 1). gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1307 SSA_1308 SSA_1308 SSA_1308 1326357 1326908 - hypothetical protein GC: 45.83%25%3B Codon Adaptation Index (CAI): 0.747. gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1308 SSA_1309 SSA_1309 SSA_1309 1327169 1327408 - RNA-binding protein GC: 39.17%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): J. Alves gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1309 SSA_1310 SSA_1310 rpsP rpsP 1327428 1327700 - 30S ribosomal protein S16 binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1310 SSA_1311 SSA_1311 SSA_1311 1327932 1328483 - HAD superfamily hydrolase GC: 45.83%25%3B Codon Adaptation Index (CAI): 0.773. gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1311 SSA_1312 SSA_1312 SSA_1312 1328827 1329753 - RADC-like protein GC: 35.81%25%3B Codon Adaptation Index (CAI): 0.764. gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1312 SSA_1313 SSA_1313 SSA_1313 1329805 1330638 - hypothetical protein GC: 44.6%25%3B Codon Adaptation Index (CAI): 0.752. Helix-turn-helix prediction: AraC. gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1313 SSA_1314 SSA_1314 SSA_1314 1330836 1331330 - Fe-S-cluster oxidoreductase GC: 44.04%25%3B Codon Adaptation Index (CAI): 0.804. gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1314 SSA_1315 SSA_1315 SSA_1315 1331498 1332142 - hypothetical protein GC: 42.48%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.814. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.997). gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1315 SSA_1316 SSA_1316 SSA_1316 1332247 1333038 - nicotinamide mononucleotide transporter GC: 42.05%25%3B Transporter classification TC:4.B.1.1.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.798. Curator(s): J. Alves gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1316 SSA_1317 SSA_1317 SSA_1317 1333488 1333634 - hypothetical protein GC: 31.97%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.702. gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1317 SSA_1318 SSA_1318 lepA lepA 1334079 1335911 - GTP-binding protein LepA binds to the ribosome on the universally-conserved alpha-sarcin loop gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1318 SSA_1319 SSA_1319 SSA_1319 1336025 1336840 + hypothetical protein GC: 47.43%25%3B Codon Adaptation Index (CAI): 0.801. gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1319 SSA_1320 SSA_1320 SSA_1320 1336919 1337284 - hypothetical protein GC: 49.73%25%3B Codon Adaptation Index (CAI): 0.75. gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1320 SSA_1321 SSA_1321 hemH hemH 1337336 1338433 - ferrochelatase GC: 43.62%25%3B Codon Adaptation Index (CAI): 0.789. gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1321 SSA_1322 SSA_1322 SSA_1322 1338626 1339909 - glycosyl transferase family protein GC: 46.26%25%3B Codon Adaptation Index (CAI): 0.769. gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1322 SSA_1323 SSA_1323 SSA_1323 1339878 1340540 - hypothetical protein GC: 44.04%25%3B Codon Adaptation Index (CAI): 0.766. gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1323 SSA_1324 SSA_1324 SSA_1324 1340518 1341708 - ceramide glucosyltransferase GC: 44.08%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.759. gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1324 SSA_1325 SSA_1325 SSA_1325 1341663 1342433 - ketoacyl reductase hetN GC: 48.77%25%3B Codon Adaptation Index (CAI): 0.722. gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1325 SSA_1326 SSA_1326 pepT pepT 1342572 1343795 + peptidase T catalyzes the release of the N-terminal amino acid from a tripeptide gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1326 SSA_1327 SSA_1327 SSA_1327 1343840 1344391 - hypothetical protein GC: 33.33%25%3B Codon Adaptation Index (CAI): 0.738. Curator(s): J. Alves gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1327 SSA_1328 SSA_1328 SSA_1328 1344432 1344986 - hypothetical protein GC: 31.71%25%3B Codon Adaptation Index (CAI): 0.75. Curator(s): J. Alves gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1328 SSA_1329 SSA_1329 SSA_1329 1345116 1345994 - hypothetical protein GC: 39.02%25%3B Codon Adaptation Index (CAI): 0.753. Curator(s): J. Alves gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1329 SSA_1330 SSA_1330 SSA_1330 1345991 1346458 - hypothetical protein GC: 37.61%25%3B Codon Adaptation Index (CAI): 0.719. Curator(s): J. Alves gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1330 SSA_1331 SSA_1331 SSA_1331 1346563 1347222 - hypothetical protein GC: 36.97%25%3B Codon Adaptation Index (CAI): 0.796. Curator(s): J. Alves gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1331 SSA_1332 SSA_1332 SSA_1332 1347307 1347735 - hypothetical protein GC: 33.8%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1332 SSA_1333 SSA_1333 SSA_1333 1347783 1348529 - hypothetical protein GC: 34.54%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): J. Alves gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1333 SSA_1334 SSA_1334 SSA_1334 1348572 1349048 - hypothetical protein GC: 31.24%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1334 SSA_1335 SSA_1335 SSA_1335 1349145 1349753 - ankyrin repeat-containing protein GC: 35.3%25%3B Codon Adaptation Index (CAI): 0.733. Curator(s): J. Alves gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1335 SSA_1336 SSA_1336 SSA_1336 1349671 1350216 - ankyrin repeat-containing protein GC: 31.5%25%3B Codon Adaptation Index (CAI): 0.734. Curator(s): J. Alves gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1336 SSA_1337 SSA_1337 SSA_1337 1350582 1351181 - hypothetical protein GC: 33.67%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.759. Curator(s): J. Alves gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1337 SSA_1338 SSA_1338 SSA_1338 1351290 1351817 - hypothetical protein GC: 35.8%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.739. Curator(s): J. Alves gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1338 SSA_1339 SSA_1339 phpA phpA 1351969 1355514 - histidine triad protein D GC: 47.66%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.769. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.72)%3B Helix-turn-helix prediction: AraC. gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1339 SSA_1340 SSA_1340 SSA_1340 1355524 1356462 - Zn/Mn ABC transporter GC: 47.71%25%3B Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.774. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1340 SSA_1341 SSA_1341 carB carB 1356738 1359917 - carbamoyl phosphate synthase large subunit four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1341 SSA_1342 SSA_1342 carA carA 1359941 1361107 - carbamoyl phosphate synthase small subunit catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1342 SSA_1343 SSA_1343 pyrB pyrB 1361132 1362049 - aspartate carbamoyltransferase catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1343 SSA_1344 SSA_1344 pyrP pyrP 1362159 1363442 - xanthine/uracil permease GC: 47.74%25%3B Transporter classification TC:2.A.40.1.2. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.767. gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1344 SSA_1345 SSA_1345 pyrR pyrR 1363451 1363969 - bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes%2C also has been shown to have uracil phosphoribosyltransferase activity gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1345 SSA_1346 SSA_1346 SSA_1346 1364241 1364873 - hypothetical protein GC: 40.28%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.781. gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1346 SSA_1347 SSA_1347 phnA phnA 1364881 1365231 - PhnA protein GC: 45.87%25%3B Codon Adaptation Index (CAI): 0.789. gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1347 SSA_1348 SSA_1348 SSA_1348 1365495 1366019 + hypothetical protein GC: 44.57%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.77. SignalP prediction: Yes (prob. 1). gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1348 SSA_1349 SSA_1349 SSA_1349 1366058 1366573 + biotin repressor family transcriptional regulator GC: 47.67%25%3B Codon Adaptation Index (CAI): 0.77. Curator(s): J. Alves gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1349 SSA_1350 SSA_1350 SSA_1350 1367035 1367502 - hypothetical protein GC: 45.09%25%3B Codon Adaptation Index (CAI): 0.793. Helix-turn-helix prediction: AraC. gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1350 SSA_1352 SSA_1352 SSA_1352 1367585 1368031 - hypothetical protein GC: 34.23%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.771. gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1352 SSA_1353 SSA_1353 SSA_1353 1368064 1368609 - hypothetical protein GC: 45.05%25%3B Codon Adaptation Index (CAI): 0.759. gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1353 SSA_1354 SSA_1354 SSA_1354 1368645 1369142 - hypothetical protein GC: 40.76%25%3B Codon Adaptation Index (CAI): 0.772. gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1354 SSA_1355 SSA_1355 SSA_1355 1369173 1369949 - hypothetical protein GC: 32.43%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.771. SignalP prediction: Yes (prob. 0.941). gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1355 SSA_1356 SSA_1356 uvrB uvrB 1370017 1372005 - excinuclease ABC subunit B The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1356 SSA_1357 SSA_1357 SSA_1357 1372167 1373114 - hypothetical protein GC: 42.83%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.781. gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1357 SSA_1358 SSA_1358 SSA_1358 1373194 1374126 - hypothetical protein GC: 46.41%25%3B Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.752. gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1358 SSA_1359 SSA_1359 SSA_1359 1374322 1376490 + arginine/histidine ABC transporter permease GC: 45.55%25%3B Transporter classification TC:3.A.1.3.12. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1359 SSA_1360 SSA_1360 SSA_1360 1376490 1377230 + arginine/histidine ABC transporter ATPase GC: 48.04%25%3B Transporter classification TC:3.A.1.3.8. Codon Adaptation Index (CAI): 0.778. Curator(s): J. Alves gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1360 SSA_1361 SSA_1361 SSA_1361 1377308 1377844 + ORFA%2C transposon ISSsa2 GC: 38.18%25%3B Codon Adaptation Index (CAI): 0.728. Helix-turn-helix prediction: AraC. gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1361 SSA_1362 SSA_1362 SSA_1362 1378051 1378659 + ORFB%2C transposon ISSsa2 GC: 40.07%25%3B Codon Adaptation Index (CAI): 0.762. gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1362 SSA_1363 SSA_1363 SSA_1363 1378729 1380507 - FmtA-like protein GC: 45.76%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.76. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1363 SSA_1364 SSA_1364 SSA_1364 1380572 1381387 - hypothetical protein GC: 44.61%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.739. gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1364 SSA_1365 SSA_1365 SSA_1365 1381442 1382389 - FmtA-like protein GC: 45.25%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.795. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1365 SSA_1366 SSA_1366 SSA_1366 1382386 1383753 - alkaline D-stereospecific endopeptidase GC: 47%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.763. gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1366 SSA_1367 SSA_1367 SSA_1367 1383733 1383888 + hypothetical protein GC: 47.44%25%3B Codon Adaptation Index (CAI): 0.701. gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1367 SSA_1368 SSA_1368 SSA_1368 1383838 1384167 - hypothetical protein GC: 43.94%25%3B Codon Adaptation Index (CAI): 0.751. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1368 SSA_1369 SSA_1369 SSA_1369 1384232 1386019 - FmtA-like protein GC: 46.7%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.784. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1369 SSA_1370 SSA_1370 SSA_1370 1386123 1387058 - CAAX amino protease GC: 43.8%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.731. gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1370 SSA_1371 SSA_1371 SSA_1371 1387141 1388922 - FmtA-like protein GC: 46.02%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.756. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1371 SSA_1372 SSA_1372 SSA_1372 1389036 1389227 - hypothetical protein GC: 44.27%25%3B Codon Adaptation Index (CAI): 0.701. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.991). gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1372 SSA_1373 SSA_1373 SSA_1373 1389847 1391373 + ABC transporter ATPase GC: 49.38%25%3B Transporter classification TC:3.A.1.121.2. Codon Adaptation Index (CAI): 0.752. Curator(s): J. Alves gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1373 SSA_1374 SSA_1374 SSA_1374 1391449 1393185 - multidrug ABC transporter permease/ATPase GC: 47.27%25%3B Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.984)%3B Curator(s): J. Alves gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1374 SSA_1375 SSA_1375 SSA_1375 1393175 1394917 - multidrug ABC transporter permease/ATPase GC: 48.48%25%3B Transporter classification TC:3.A.1.117.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.783. Curator(s): J. Alves gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1375 SSA_1376 SSA_1376 pmrB pmrB 1395014 1396201 - transporter GC: 41.92%25%3B Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.769. gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1376 SSA_1377 SSA_1377 asnC asnC 1396358 1397704 - asparaginyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1377 SSA_1378 SSA_1378 SSA_1378 1397726 1398088 - hypothetical protein GC: 44.63%25%3B Codon Adaptation Index (CAI): 0.804. gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1378 SSA_1379 SSA_1379 SSA_1379 1398268 1398618 - hypothetical protein GC: 42.45%25%3B Codon Adaptation Index (CAI): 0.777. gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1379 SSA_1380 SSA_1380 SSA_1380 1398628 1399221 - hypothetical protein GC: 43.77%25%3B Codon Adaptation Index (CAI): 0.774. gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1380 SSA_1381 SSA_1381 SSA_1381 1399236 1399655 - hypothetical protein GC: 40.71%25%3B Codon Adaptation Index (CAI): 0.718. gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1381 SSA_1382 SSA_1382 SSA_1382 1399887 1400360 - hypothetical protein GC: 40.72%25%3B Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1382 SSA_1383 SSA_1383 aspB aspB 1400627 1401808 - aspartate aminotransferase catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1383 SSA_1384 SSA_1384 SSA_1384 1401805 1402293 - hypothetical protein GC: 43.97%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.78. SignalP prediction: Yes (prob. 0.986). gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1384 SSA_1385 SSA_1385 SSA_1385 1402408 1402854 + multiple antibiotic resistance operon transcription repressor MarR GC: 40.04%25%3B Codon Adaptation Index (CAI): 0.838. Curator(s): J. Alves gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1385 SSA_1386 SSA_1386 SSA_1386 1402940 1403488 + NADPH-dependent FMN reductase GC: 47.18%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1386 SSA_1387 SSA_1387 SSA_1387 1403587 1403886 - hypothetical protein GC: 30.33%25%3B Codon Adaptation Index (CAI): 0.778. Curator(s): J. Alves gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1387 SSA_1388 SSA_1388 SSA_1388 1403918 1404463 - hypothetical protein GC: 32.05%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.749. Curator(s): J. Alves gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1388 SSA_1389 SSA_1389 SSA_1389 1404460 1405002 - hypothetical protein GC: 29.1%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.746. gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1389 SSA_1390 SSA_1390 SSA_1390 1405723 1406208 - hypothetical protein GC: 36.01%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.759. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.732). gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1390 SSA_1391 SSA_1391 SSA_1391 1406248 1406880 - hypothetical protein GC: 34.91%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.714. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.866). gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1391 SSA_1392 SSA_1392 SSA_1392 1406882 1408513 - hypothetical protein GC: 37.62%25%3B Codon Adaptation Index (CAI): 0.767. gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1392 SSA_1393 SSA_1393 SSA_1393 1408504 1408863 - hypothetical protein GC: 34.44%25%3B Codon Adaptation Index (CAI): 0.74. gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1393 SSA_1394 SSA_1394 SSA_1394 1408863 1409138 - hypothetical protein GC: 41.67%25%3B Codon Adaptation Index (CAI): 0.793. gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1394 SSA_1395 SSA_1395 SSA_1395 1409135 1409863 - hypothetical protein GC: 45.27%25%3B Codon Adaptation Index (CAI): 0.735. Helix-turn-helix prediction: AraC. gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1395 SSA_1396 SSA_1396 SSA_1396 1409880 1410464 - hypothetical protein GC: 42.74%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.759. Helix-turn-helix prediction: AraC. gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1396 SSA_1397 SSA_1397 SSA_1397 1410729 1411055 + hypothetical protein GC: 40.67%25%3B Codon Adaptation Index (CAI): 0.762. gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1397 SSA_1398 SSA_1398 hlyIII hlyIII 1411021 1411686 + hemolysin III-like protein GC: 47.15%25%3B Transporter classification TC:9.B.30.1.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.743. SignalP prediction: Yes (prob. 0.7)%3B Curator(s): J. Alves gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1398 SSA_1399 SSA_1399 SSA_1399 1411749 1412315 - hypothetical protein GC: 41.09%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.754. SignalP prediction: Yes (prob. 0.992)%3B Curator(s): J. Alves%3B possibly membrane-associated gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1399 SSA_1400 SSA_1400 pdxK pdxK 1412296 1413162 - pyridoxamine kinase catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1400 SSA_1401 SSA_1401 SSA_1401 1413202 1414521 + GntR family transcriptional regulator GC: 44.39%25%3B Codon Adaptation Index (CAI): 0.749. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1401 SSA_1402 SSA_1402 SSA_1402 1414571 1416310 - multidrig ABC transporter ATPase/permease GC: 45.8%25%3B Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.98)%3B Curator(s): J. Alves gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1402 SSA_1403 SSA_1403 SSA_1403 1416312 1418054 - multidrug ABC transporter permease/ATPase GC: 47.1%25%3B Transporter classification TC:3.A.1.106.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.775. SignalP prediction: Yes (prob. 0.997)%3B Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1403 SSA_1404 SSA_1404 SSA_1404 1418142 1418813 - hypothetical protein GC: 45.09%25%3B Codon Adaptation Index (CAI): 0.793. Curator(s): J. Alves gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1404 SSA_1405 SSA_1405 cutC cutC 1418848 1419483 - copper homeostasis protein CutC GC: 47.48%25%3B Codon Adaptation Index (CAI): 0.772. gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1405 SSA_1406 SSA_1406 SSA_1406 1419545 1420405 - histone acetyltransferase HPA2-like acetyltransferase GC: 42.97%25%3B Codon Adaptation Index (CAI): 0.748. gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1406 SSA_1408 SSA_1408 SSA_1408 1420496 1421095 - hypothetical protein GC: 44.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1408 SSA_1409 SSA_1409 rmlB rmlB 1421299 1422345 - dTDP-glucose-4%2C6-dehydratase GC: 45.46%25%3B Codon Adaptation Index (CAI): 0.79. gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1409 SSA_1410 SSA_1410 rmlC rmlC 1422583 1423176 - dTDP-4-keto-6-deoxyglucose-3%2C5-epimerase GC: 45.12%25%3B Codon Adaptation Index (CAI): 0.782. gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1410 SSA_1411 SSA_1411 rmlA rmlA 1423181 1424050 - glucose-1-phosphate thymidylyltransferase GC: 44.25%25%3B Codon Adaptation Index (CAI): 0.832. gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1411 SSA_1412 SSA_1412 SSA_1412 1424084 1424185 - hypothetical protein GC: 39.22%25%3B Codon Adaptation Index (CAI): 0.79. gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1412 SSA_1413 SSA_1413 SSA_1413 1424185 1425009 - GufA-like protein GC: 50.42%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.743. gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1413 SSA_1414 SSA_1414 SSA_1414 1425032 1425502 - hypothetical protein GC: 42.68%25%3B Codon Adaptation Index (CAI): 0.737. gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1414 SSA_1415 SSA_1415 SSA_1415 1425504 1426598 - oxidoreductase GC: 49.41%25%3B Codon Adaptation Index (CAI): 0.769. LipoP prediction: SpI. gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1415 SSA_1416 SSA_1416 SSA_1416 1426610 1427407 - hypothetical protein GC: 45.36%25%3B Codon Adaptation Index (CAI): 0.778. gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1416 SSA_1417 SSA_1417 SSA_1417 1427394 1428083 - SAM-dependent methyltransferase GC: 48.55%25%3B Codon Adaptation Index (CAI): 0.781. gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1417 SSA_1418 SSA_1418 SSA_1418 1428229 1429017 - glutathione S-transferase YghU%3B B2989%3B one of eight glutathione transferase proteins from E. coli gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1418 SSA_1419 SSA_1419 dnaD dnaD 1429085 1429765 - hypothetical protein GC: 45.67%25%3B Codon Adaptation Index (CAI): 0.809. gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1419 SSA_1420 SSA_1420 metA metA 1429774 1430715 - homoserine O-succinyltransferase catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1420 SSA_1421 SSA_1421 apt apt 1430863 1431375 - adenine phosphoribosyltransferase catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1421 SSA_1422 SSA_1422 SSA_1422 1431472 1431645 - hypothetical protein GC: 37.36%25%3B Codon Adaptation Index (CAI): 0.747. gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1422 SSA_1423 SSA_1423 recJ recJ 1431651 1433873 - single-stranded DNA-specific exonuclease%2C 5'-3' GC: 46.24%25%3B Codon Adaptation Index (CAI): 0.791. Helix-turn-helix prediction: AraC. gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1423 SSA_1424 SSA_1424 SSA_1424 1433979 1434569 - hydrolase GC: 46.02%25%3B Codon Adaptation Index (CAI): 0.769. gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1424 SSA_1425 SSA_1425 SSA_1425 1434634 1435669 - Conserved hypothetical protein (pseudogene). GC: 43.44%25. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.722. gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1425 SSA_1428 SSA_1428 SSA_1428 1435728 1436438 - hypothetical protein GC: 44.16%25%3B Codon Adaptation Index (CAI): 0.787. gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1428 SSA_1429 SSA_1429 SSA_1429 1436445 1437200 - hypothetical protein GC: 44.71%25%3B Codon Adaptation Index (CAI): 0.763. gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1429 SSA_1430 SSA_1430 elaC elaC 1437197 1438126 - ribonuclease Z member of metallo-beta-lactamase family%3B the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase%3B in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not%3B associates with two zinc ions gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1430 SSA_1431 SSA_1431 SSA_1431 1438137 1438820 - hypothetical protein GC: 45.91%25%3B Codon Adaptation Index (CAI): 0.752. Curator(s): J. Alves gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1431 SSA_1432 SSA_1432 hflX hflX 1438753 1439991 - HflX GTPase GC: 48.35%25%3B Codon Adaptation Index (CAI): 0.778. Curator(s): J. Alves gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1432 SSA_1433 SSA_1433 miaA miaA 1440023 1440907 - tRNA delta(2)-isopentenylpyrophosphate transferase IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1433 SSA_1434 SSA_1434 SSA_1434 1440990 1441160 + hypothetical protein GC: 43.86%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.807. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.996)%3B Curator(s): J. Alves gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1434 SSA_1435 SSA_1435 SSA_1435 1441841 1442302 - hypothetical protein GC: 37.66%25%3B Codon Adaptation Index (CAI): 0.768. gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1435 SSA_1436 SSA_1436 SSA_1436 1442289 1443215 - hypothetical protein GC: 35.92%25%3B Codon Adaptation Index (CAI): 0.764. Helix-turn-helix prediction: AraC. gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1436 SSA_1438 SSA_1438 SSA_1438 1443232 1443702 - acetyltransferase GC: 45.86%25%3B Codon Adaptation Index (CAI): 0.739. gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1438 SSA_1439 SSA_1439 hisK hisK 1443714 1444463 - hypothetical protein GC: 47.87%25%3B Codon Adaptation Index (CAI): 0.728. gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1439 SSA_1440 SSA_1440 hisE hisE 1444497 1444811 - phosphoribosyl-ATP pyrophosphatase catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1440 SSA_1441 SSA_1441 hisI hisI 1444929 1445273 - phosphoribosyl-AMP cyclohydrolase GC: 48.12%25%3B Codon Adaptation Index (CAI): 0.774. gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1441 SSA_1442 SSA_1442 hisF hisF 1445273 1446031 - imidazole glycerol phosphate synthase subunit HisF catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamideribonucleotide and glutamate%3B the HisF subunit acts as a cyclase gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1442 SSA_1443 SSA_1443 hisA hisA 1446034 1446762 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l-(5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1443 SSA_1444 SSA_1444 hisH hisH 1446734 1447357 - imidazole glycerol phosphate synthase subunit HisH with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1444 SSA_1445 SSA_1445 hisB hisB 1447392 1447976 - imidazoleglycerol-phosphate dehydratase catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1445 SSA_1446 SSA_1446 hisD hisD 1447988 1449280 - histidinol dehydrogenase catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1446 SSA_1447 SSA_1447 hisG hisG 1449277 1449921 - ATP phosphoribosyltransferase short form of enzyme%3B requires HisZ for function%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms heteromultimer of HisG and HisZ gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1447 SSA_1448 SSA_1448 hisZ hisZ 1449918 1450907 - ATP phosphoribosyltransferase GC: 49.8%25%3B Codon Adaptation Index (CAI): 0.73. gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1448 SSA_1449 SSA_1449 hisC hisC 1450963 1452021 - histidinol-phosphate aminotransferase catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1449 SSA_1450 SSA_1450 SSA_1450 1452495 1452800 - hypothetical protein GC: 41.18%25%3B Codon Adaptation Index (CAI): 0.796. gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1450 SSA_1451 SSA_1451 rexA rexA 1452834 1456508 - exonuclease RexA GC: 47.89%25%3B Codon Adaptation Index (CAI): 0.779. gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1451 SSA_1452 SSA_1452 rexB rexB 1456505 1459786 - second subunit of major exonuclease GC: 49.12%25%3B Codon Adaptation Index (CAI): 0.769. gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1452 SSA_1453 SSA_1453 SSA_1453 1459987 1460298 - hypothetical protein GC: 43.27%25%3B Codon Adaptation Index (CAI): 0.771. gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1453 SSA_1454 SSA_1454 SSA_1454 1460345 1461190 - hypothetical protein GC: 41.25%25%3B Codon Adaptation Index (CAI): 0.771. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1454 SSA_1455 SSA_1455 SSA_1455 1461224 1461766 - hypothetical protein GC: 39.23%25%3B Codon Adaptation Index (CAI): 0.79. gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1455 SSA_1456 SSA_1456 SSA_1456 1462203 1462439 - hypothetical protein GC: 31.22%25%3B Codon Adaptation Index (CAI): 0.809. gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1456 SSA_1457 SSA_1457 dexB dexB 1462575 1464329 - neopullulanase GC: 41.71%25%3B Codon Adaptation Index (CAI): 0.767. Curator(s): J. Alves gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1457 SSA_1458 SSA_1458 SSA_1458 1464559 1465437 - hypothetical protein GC: 34.36%25%3B Codon Adaptation Index (CAI): 0.771. gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1458 SSA_1459 SSA_1459 SSA_1459 1466201 1467571 - RNA methyltransferase GC: 47.78%25%3B Codon Adaptation Index (CAI): 0.76. gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1459 SSA_1460 SSA_1460 SSA_1460 1467656 1469005 - LytR family transcriptional regulator GC: 47.7%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.789. Capsular polysaccharide biosynthesis-related transcriptional attenuator. Curator(s): J. Alves gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1460 SSA_1462 SSA_1462 pheA pheA 1469024 1469857 - prephenate dehydratase catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1462 SSA_1463 SSA_1463 aroK aroK 1469854 1470330 - shikimate kinase GC: 49.69%25%3B Codon Adaptation Index (CAI): 0.763. gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1463 SSA_1464 SSA_1464 aroA aroA 1470323 1471606 - 3-phosphoshikimate 1-carboxyvinyltransferase catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1464 SSA_1465 SSA_1465 SSA_1465 1471738 1472076 - hypothetical protein GC: 45.72%25%3B Codon Adaptation Index (CAI): 0.816. Curator(s): J. Alves gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1465 SSA_1466 SSA_1466 tyrA tyrA 1472095 1473201 - prephenate dehydrogenase catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1466 SSA_1467 SSA_1467 aroC aroC 1473217 1474383 - chorismate synthase catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1467 SSA_1468 SSA_1468 aroB aroB 1474475 1475542 - 3-dehydroquinate synthase catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1468 SSA_1469 SSA_1469 aroE aroE 1475553 1476407 - shikimate 5-dehydrogenase AroE%3B catalyzes the conversion of shikimate to 3-dehydroshikimate gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1469 SSA_1470 SSA_1470 aroD aroD 1476397 1477074 - 3-dehydroquinate dehydratase catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1470 SSA_1471 SSA_1471 SSA_1471 1477071 1478234 - hypothetical protein GC: 43.56%25%3B Codon Adaptation Index (CAI): 0.781. gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1471 SSA_1472 SSA_1472 SSA_1472 1478575 1478745 - hypothetical protein GC: 33.92%25%3B Codon Adaptation Index (CAI): 0.719. gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1472 SSA_1473 SSA_1473 SSA_1473 1478819 1479010 - hypothetical protein GC: 40.1%25%3B Codon Adaptation Index (CAI): 0.776. gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1473 SSA_1474 SSA_1474 SSA_1474 1479157 1479831 - lipoprotein GC: 34.52%25%3B Codon Adaptation Index (CAI): 0.727. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.754). gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1474 SSA_1475 SSA_1475 SSA_1475 1480065 1480211 - hypothetical protein GC: 31.97%25%3B Codon Adaptation Index (CAI): 0.772. gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1475 SSA_1476 SSA_1476 SSA_1476 1480313 1482508 + phosphoglycerol transferase alkaline phosphatase superfamily protein GC: 44.72%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.556). gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1476 SSA_1477 SSA_1477 SSA_1477 1482636 1482974 + transposase GC: 38.94%25%3B Codon Adaptation Index (CAI): 0.768. gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1477 SSA_1478 SSA_1478 SSA_1478 1483029 1483184 + transposase GC: 44.23%25%3B Codon Adaptation Index (CAI): 0.753. Helix-turn-helix prediction: AraC. gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1478 SSA_1479 SSA_1479 SSA_1479 1483320 1483949 + transposase GC: 38.73%25%3B Codon Adaptation Index (CAI): 0.749. gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1479 SSA_1480 SSA_1480 SSA_1480 1484050 1484901 - hypothetical protein GC: 46.24%25%3B Codon Adaptation Index (CAI): 0.751. Helix-turn-helix prediction: AraC. gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1480 SSA_1481 SSA_1481 SSA_1481 1484916 1486712 - FmtA-like protein GC: 46.74%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.755. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1481 SSA_1482 SSA_1482 pulI pulI 1487039 1489336 - pullulanase GC: 45.69%25%3B Codon Adaptation Index (CAI): 0.782. gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1482 SSA_1483 SSA_1483 SSA_1483 1489360 1490310 - lipid kinase similar to YegS from E. coli gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1483 SSA_1484 SSA_1484 ligA ligA 1490320 1492278 - NAD-dependent DNA ligase LigA this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1484 SSA_1485 SSA_1485 ccl ccl 1492384 1492899 - citrulline cluster-linked gene GC: 37.98%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.808. gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1485 SSA_1486 SSA_1486 mesH mesH 1493062 1493502 + hypothetical protein GC: 35.83%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.762. gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1486 SSA_1487 SSA_1487 SSA_1487 1493573 1494280 - hypothetical protein GC: 46.47%25%3B Codon Adaptation Index (CAI): 0.773. gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1487 SSA_1488 SSA_1488 SSA_1488 1494298 1494747 - multiple antibiotic resistance operon transcription repressor MarR GC: 46.44%25%3B Codon Adaptation Index (CAI): 0.748. Curator(s): J. Alves gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1488 SSA_1489 SSA_1489 SSA_1489 1494868 1495878 - hypothetical protein GC: 32.05%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.966). gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1489 SSA_1490 SSA_1490 SSA_1490 1495911 1496822 - ribonuclease BN GC: 42.21%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.781. gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1490 SSA_1491 SSA_1491 map map 1496870 1497727 - methionine aminopeptidase catalyzes the removal of N-terminal amino acids from peptides and arylamides gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1491 SSA_1492 SSA_1492 SSA_1492 1497749 1499044 - hypothetical protein GC: 46.53%25%3B Codon Adaptation Index (CAI): 0.785. Helix-turn-helix prediction: AraC. gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1492 SSA_1493 SSA_1493 SSA_1493 1499019 1499570 - hypothetical protein GC: 44.02%25%3B Codon Adaptation Index (CAI): 0.759. gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1493 SSA_1494 SSA_1494 murZ murZ 1499604 1500863 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation%3B gram-positive bacteria have 2 copies of MurA which are active gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1494 SSA_1495 SSA_1495 metK metK 1501109 1502299 - S-adenosylmethionine synthetase catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1495 SSA_1496 SSA_1496 SSA_1496 1502563 1502994 - hypothetical protein GC: 35.42%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.763. gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1496 SSA_1497 SSA_1497 comEB comEB 1503158 1503625 - dCMP deaminase GC: 48.08%25%3B Codon Adaptation Index (CAI): 0.761. gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1497 SSA_1498 SSA_1498 rplT rplT 1503843 1504202 - 50S ribosomal protein L20 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1498 SSA_1499 SSA_1499 rpmI rpmI 1504247 1504447 - 50S ribosomal protein L35 GC: 44.78%25%3B Codon Adaptation Index (CAI): 0.823. SignalP prediction: Yes (prob. 0.488). gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1499 SSA_1500 SSA_1500 infC infC 1504481 1505011 - translation initiation factor IF-3 IF-3 has several functions that are required and promote translation initiation including%3B preventing association of 70S by binding to 30S%3B monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites%3B stimulates codon-anticodon interactions at P-site%3B involved in moving mRNA to the P-site%3B and in recycling subunits gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1500 SSA_1501 SSA_1501 cmk cmk 1505185 1505862 - cytidylate kinase Catalyzes the formation of (d)CDP from ATP and (d)CMP gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1501 SSA_1502 SSA_1502 SSA_1502 1505872 1506309 - hypothetical protein GC: 46.35%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.766. Curator(s): J. Alves gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1502 SSA_1503 SSA_1503 fer fer 1506349 1506552 + ferredoxin GC: 46.57%25%3B Codon Adaptation Index (CAI): 0.733. gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1503 SSA_1504 SSA_1504 SSA_1504 1506549 1507037 - hypothetical protein GC: 38.65%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.773. gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1504 SSA_1505 SSA_1505 SSA_1505 1507117 1509645 - hypothetical protein GC: 39.42%25%3B Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.778. Partially similar to phosphoglycerol transferase-like proteins%2C alkaline phosphatase superfamily. Curator(s): J. Alves gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1505 SSA_1506 SSA_1506 rgpFc rgpFc 1509642 1511312 - lipopolysaccharide biosynthesis protein GC: 41.77%25%3B Codon Adaptation Index (CAI): 0.777. gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1506 SSA_1507 SSA_1507 rgpD rgpD 1511329 1512534 - sugar ABC transporter ATPase GC: 42.87%25%3B Transporter classification TC:3.A.1.103.1. Codon Adaptation Index (CAI): 0.809. Curator(s): J. Alves gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1507 SSA_1508 SSA_1508 rgpC rgpC 1512534 1513340 - sugar ABC transporter permease GC: 40.4%25%3B Transporter classification TC:3.A.1.103.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1508 SSA_1509 SSA_1509 rgpB rgpB 1513346 1514281 - polysaccharide biosynthesis protein/ rhamnosyltransferase GC: 45.19%25%3B Codon Adaptation Index (CAI): 0.792. gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1509 SSA_1510 SSA_1510 rgpA rgpA 1514278 1515426 - rhamnosyltransferase GC: 43.69%25%3B Codon Adaptation Index (CAI): 0.79. gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1510 SSA_1511 SSA_1511 SSA_1511 1515540 1516787 - glycosyltransferase GC: 42.63%25%3B Codon Adaptation Index (CAI): 0.748. Helix-turn-helix prediction: AraC. gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1511 SSA_1512 SSA_1512 SSA_1512 1516791 1518026 - hypothetical protein GC: 42.48%25%3B Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.76. gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1512 SSA_1513 SSA_1513 rgpF rgpF 1518085 1521066 - glycosyltransferase GC: 41.62%25%3B Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1513 SSA_1514 SSA_1514 SSA_1514 1521091 1521870 - cell-wall biogenesis glycosyltransferase GC: 40.9%25%3B Codon Adaptation Index (CAI): 0.798. gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1514 SSA_1515 SSA_1515 SSA_1515 1521860 1522219 - hypothetical protein GC: 33.89%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.799. gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1515 SSA_1516 SSA_1516 SSA_1516 1522219 1522923 - cell-wall biogenesis glycosyltransferase GC: 40%25%3B Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.818. gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1516 SSA_1517 SSA_1517 cpsIaJ cpsIaJ 1522932 1523903 - cell-wall biogenesis glycosyltransferase GC: 31.28%25%3B Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.79. gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1517 SSA_1518 SSA_1518 rgpE rgpE 1523930 1524877 - glycosyl transferase family protein GC: 29.96%25%3B Transporter classification TC:9.B.32.1.3. Codon Adaptation Index (CAI): 0.757. gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1518 SSA_1519 SSA_1519 SSA_1519 1524885 1526159 - polysaccharide/teichoic acid transporter GC: 28.55%25%3B Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.753. SignalP prediction: Yes (prob. 0.989). gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1519 SSA_1520 SSA_1520 tuf tuf 1526475 1527671 - elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1520 SSA_1521 SSA_1521 ppc ppc 1527927 1530773 - phosphoenolpyruvate carboxylase catalyzes the formation of oxaloacetate from phosphoenolpyruvate gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1521 SSA_1522 SSA_1522 ftsW ftsW 1530820 1532052 - cell division protein FtsW GC: 44.2%25%3B Transporter classification TC:9.B.3.1.3. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.729. SignalP prediction: Yes (prob. 0.95). gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1522 SSA_1523 SSA_1523 basA basA 1532207 1532680 + glutathione peroxidase GC: 43.46%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): J. Alves gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1523 SSA_1525 SSA_1525 SSA_1525 1532886 1533743 + 1%2C4-beta-N-acetylmuramidase GC: 39.98%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998). gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1525 SSA_1526 SSA_1526 SSA_1526 1533862 1534734 + hypothetical protein GC: 42.38%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.817). gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1526 SSA_1527 SSA_1527 ebsC ebsC 1534727 1535212 + hypothetical protein GC: 43.42%25%3B Codon Adaptation Index (CAI): 0.797. gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1527 SSA_1528 SSA_1528 gpm gpm 1535275 1535910 + phosphoglycerate mutase GC: 45.91%25%3B Codon Adaptation Index (CAI): 0.776. gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1528 SSA_1529 SSA_1529 lysS lysS 1536011 1537501 + lysyl-tRNA synthetase class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1529 SSA_1530 SSA_1530 SSA_1530 1537600 1538868 - peptide ABC transporter permease GC: 44.6%25%3B Transporter classification TC:3.A.1.122.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.773. SignalP prediction: Yes (prob. 0.994)%3B Curator(s): J. Alves gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1530 SSA_1531 SSA_1531 salX salX 1538868 1539566 - peptide ABC transporter ATPase GC: 47.21%25%3B Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.794. Curator(s): J. Alves gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1531 SSA_1532 SSA_1532 acrA acrA 1539550 1540713 - membrane-fusion protein / periplasmic component of efflux system GC: 44.76%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): J. Alves gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1532 SSA_1533 SSA_1533 gor gor 1540731 1542272 + glutathione reductase catalyzes the reduction of 2 glutathione to glutathione disulfide%3B maintains high levels of reduced glutathione in the cytosol%3B involved in redox regulation and oxidative defense gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1533 SSA_1535 SSA_1535 SSA_1535 1542547 1543278 - hypothetical protein GC: 45.49%25%3B Codon Adaptation Index (CAI): 0.786. gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1535 SSA_1536 SSA_1536 bioY bioY 1543749 1544294 + biotin synthase GC: 45.24%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.76. SignalP prediction: Yes (prob. 1). gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1536 SSA_1537 SSA_1537 SSA_1537 1544319 1544531 - hypothetical protein GC: 43.19%25%3B Codon Adaptation Index (CAI): 0.815. gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1537 SSA_1538 SSA_1538 SSA_1538 1544622 1544978 + hypothetical protein GC: 41.74%25%3B Codon Adaptation Index (CAI): 0.781. gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1538 SSA_1540 SSA_1540 SSA_1540 1545005 1545358 - hypothetical protein GC: 41.81%25%3B Codon Adaptation Index (CAI): 0.814. gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1540 SSA_1541 SSA_1541 SSA_1541 1545401 1546690 - U32 family peptidase GC: 47.44%25%3B Codon Adaptation Index (CAI): 0.777. Curator(s): J. Alves gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1541 SSA_1542 SSA_1542 SSA_1542 1546915 1547886 - U32 family peptidase GC: 40.84%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): J. Alves gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1542 SSA_1543 SSA_1543 SSA_1543 1547975 1548277 + hypothetical protein GC: 34.65%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.792. gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1543 SSA_1544 SSA_1544 SSA_1544 1548404 1548886 - hypothetical protein GC: 39.54%25%3B Codon Adaptation Index (CAI): 0.825. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.794). Similar to Gas vesicle protein. Curator(s): J. Alves gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1544 SSA_1545 SSA_1545 SSA_1545 1548902 1549300 - hypothetical protein GC: 39.6%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.799. gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1545 SSA_1546 SSA_1546 lgt lgt 1549357 1550142 - prolipoprotein diacylglyceryl transferase transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1546 SSA_1547 SSA_1547 ptsK ptsK 1550135 1551070 - HPr kinase/phosphorylase catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1547 SSA_1548 SSA_1548 SSA_1548 1551209 1551700 - NTP pyrophosphohydrolases including oxidative damage repair enzymes GC: 44.92%25%3B Codon Adaptation Index (CAI): 0.816. gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1548 SSA_1549 SSA_1549 SSA_1549 1551906 1552202 - hypothetical protein GC: 40.4%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.809. gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1549 SSA_1550 SSA_1550 SSA_1550 1552318 1552755 - hypothetical protein GC: 45.21%25%3B Codon Adaptation Index (CAI): 0.793. gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1550 SSA_1551 SSA_1551 tex tex 1552742 1554874 - transcriptional accessory ribonuclease (YqgFc%2C S1) GC: 46.93%25%3B Codon Adaptation Index (CAI): 0.801. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1551 SSA_1552 SSA_1552 SSA_1552 1555053 1555190 + hypothetical protein GC: 37.68%25%3B Codon Adaptation Index (CAI): 0.798. gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1552 SSA_1553 SSA_1553 SSA_1553 1555187 1556092 + permease GC: 45.92%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.743. Curator(s): J. Alves gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1553 SSA_1554 SSA_1554 SSA_1554 1556089 1556907 + hypothetical protein GC: 43.47%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.779. gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1554 SSA_1555 SSA_1555 gdh gdh 1557082 1558542 + glucose-6-phosphate 1-dehydrogenase catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1555 SSA_1557 SSA_1557 ftsY ftsY 1558592 1560130 - SRPR%2C signal recognition particle-docking protein GC: 45.22%25%3B Transporter classification TC:3.A.5.1.1. Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1557 SSA_1558 SSA_1558 SSA_1558 1560134 1560952 - HAD superfamily hydrolase GC: 44.44%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): J. Alves gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1558 SSA_1559 SSA_1559 SSA_1559 1560952 1561746 - hypothetical protein GC: 44.78%25%3B Codon Adaptation Index (CAI): 0.793. gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1559 SSA_1560 SSA_1560 smc smc 1561748 1565284 - structural maintenance of chromosome protein (chromosome segregation ATPase) GC: 47.75%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1560 SSA_1561 SSA_1561 rnc rnc 1565275 1565973 - ribonuclease III cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1561 SSA_1562 SSA_1562 SSA_1562 1566095 1566454 - hypothetical protein GC: 41.39%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.758. SignalP prediction: Yes (prob. 0.906). gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1562 SSA_1563 SSA_1563 vicX vicX 1566546 1567346 - beta-lactamase superfamily hydrolase GC: 46.44%25%3B Codon Adaptation Index (CAI): 0.818. gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1563 SSA_1564 SSA_1564 SSA_1564 1567356 1568705 - histidine kinase GC: 44.96%25%3B Transporter classification TC:2.A.21.9.1. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.774. gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1564 SSA_1565 SSA_1565 SSA_1565 1568698 1569399 - two-component response transcriptional regulator GC: 45.58%25%3B Codon Adaptation Index (CAI): 0.814. Curator(s): J. Alves gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1565 SSA_1566 SSA_1566 SSA_1566 1569739 1570500 + polar amino acid ABC transporter ATP-binding protein GC: 43.31%25%3B Transporter classification TC:3.A.1.3.9. Codon Adaptation Index (CAI): 0.785. Curator(s): J. Alves gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1566 SSA_1567 SSA_1567 SSA_1567 1570515 1571327 + polar amino acid ABC transporter amino acid-binding protein GC: 40.71%25%3B Transporter classification TC:3.A.1.3.10. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1567 SSA_1568 SSA_1568 SSA_1568 1571340 1572020 + arginine/histidine ABC transporter permease GC: 45.81%25%3B Transporter classification TC:3.A.1.3.12. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.742. Curator(s): J. Alves gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1568 SSA_1569 SSA_1569 SSA_1569 1572031 1572690 + arginine/histidine ABC transporter permease GC: 42.58%25%3B Transporter classification TC:3.A.1.3.12. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.761. Curator(s): J. Alves gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1569 SSA_1570 SSA_1570 SSA_1570 1572799 1573197 + hypothetical protein GC: 38.85%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.968). gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1570 SSA_1571 SSA_1571 thrS thrS 1573301 1575244 - threonyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1571 SSA_1572 SSA_1572 SSA_1572 1575237 1575998 - hypothetical protein GC: 41.08%25%3B Codon Adaptation Index (CAI): 0.754. gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1572 SSA_1573 SSA_1573 SSA_1573 1576144 1576626 - hypothetical protein GC: 36.85%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.77. gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1573 SSA_1574 SSA_1574 SSA_1574 1576698 1578020 - glycosyl transferase family protein GC: 44.37%25%3B Codon Adaptation Index (CAI): 0.767. gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1574 SSA_1575 SSA_1575 cpoA cpoA 1578022 1579200 - glycosyl transferase family protein GC: 44.95%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.776. gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1575 SSA_1576 SSA_1576 ccpA ccpA 1579267 1580271 - catabolite control protein A GC: 43.08%25%3B Codon Adaptation Index (CAI): 0.795. Helix-turn-helix prediction: AraC. gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1576 SSA_1577 SSA_1577 pepQ pepQ 1580434 1581516 + proline dipeptidase GC: 46.17%25%3B Codon Adaptation Index (CAI): 0.806. gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1577 SSA_1578 SSA_1578 SSA_1578 1581943 1582989 + Fe3+-siderophore ABC transporter permease GC: 46.51%25%3B Transporter classification TC:3.A.1.14.5. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.737. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1578 SSA_1579 SSA_1579 SSA_1579 1582991 1583746 + Fe3+-siderophore ABC transporter ATPase GC: 46.96%25%3B Transporter classification TC:3.A.1.14.2. Codon Adaptation Index (CAI): 0.749. Curator(s): J. Alves gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1579 SSA_1581 SSA_1581 fatB fatB 1583802 1584830 + metal-binding ABC transporter GC: 43.63%25%3B Transporter classification TC:3.A.1.14.5. Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1581 SSA_1582 SSA_1582 SSA_1582 1584811 1585503 + alpha-beta hydrolase superfamily esterase GC: 44.73%25%3B Codon Adaptation Index (CAI): 0.727. Curator(s): J. Alves gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1582 SSA_1583 SSA_1583 ogt ogt 1585613 1586116 - 6-O-methylguanine DNA methyltransferase GC: 47.02%25%3B Codon Adaptation Index (CAI): 0.747. gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1583 SSA_1584 SSA_1584 SSA_1584 1586152 1587120 - ring-cleavage extradiol dioxygenase GC: 44.99%25%3B Codon Adaptation Index (CAI): 0.756. Curator(s): J. Alves gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1584 SSA_1585 SSA_1585 SSA_1585 1587065 1587694 - hypothetical protein GC: 43.97%25%3B Codon Adaptation Index (CAI): 0.788. gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1585 SSA_1586 SSA_1586 SSA_1586 1587820 1588272 - hypothetical protein GC: 48.79%25%3B Codon Adaptation Index (CAI): 0.802. Helix-turn-helix prediction: AraC. gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1586 SSA_1587 SSA_1587 SSA_1587 1588328 1589176 - hypothetical protein GC: 49.59%25%3B Codon Adaptation Index (CAI): 0.745. gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1587 SSA_1588 SSA_1588 SSA_1588 1589272 1591995 - peptide ABC transporter permease GC: 45.85%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.766. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.976)%3B Curator(s): J. Alves gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1588 SSA_1589 SSA_1589 SSA_1589 1591997 1592698 - peptide ABC transporter ATPase GC: 47.15%25%3B Transporter classification TC:3.A.1.125.1. Codon Adaptation Index (CAI): 0.766. Curator(s): J. Alves gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1589 SSA_1590 SSA_1590 SSA_1590 1592842 1593402 + TetR/AcrR family transcriptional regulator GC: 39.93%25%3B Codon Adaptation Index (CAI): 0.727. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1590 SSA_1591 SSA_1591 SSA_1591 1593493 1595541 - dipeptidase GC: 46.12%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.927). gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1591 SSA_1592 SSA_1592 SSA_1592 1595666 1596487 - hypothetical protein GC: 42.82%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.748. gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1592 SSA_1593 SSA_1593 SSA_1593 1596480 1598144 - dipeptidase GC: 44.38%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998). gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1593 SSA_1594 SSA_1594 SSA_1594 1598547 1600616 - metalloendopeptidase GC: 41.79%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.79. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.816). gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1594 SSA_1595 SSA_1595 tehB tehB 1601041 1601904 - tellurite resistance protein TehB with TehA confers resistance to tellurite gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1595 SSA_1596 SSA_1596 SSA_1596 1602165 1603124 - hypothetical protein GC: 32.6%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.789. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.618)%3B Curator(s): J. Alves gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1596 SSA_1597 SSA_1597 SSA_1597 1603357 1604325 - hypothetical protein GC: 35.4%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.752. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.786)%3B Curator(s): J. Alves gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1597 SSA_1598 SSA_1598 SSA_1598 1604384 1605328 - hypothetical protein GC: 31.11%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.656)%3B Curator(s): J. Alves gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1598 SSA_1599 SSA_1599 SSA_1599 1605532 1606506 - hypothetical protein GC: 32.62%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): J. Alves gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1599 SSA_1600 SSA_1600 SSA_1600 1606587 1606685 - hypothetical protein GC: 40.4%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.732. Curator(s): J. Alves gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1600 SSA_1601 SSA_1601 smpB smpB 1606682 1607149 - SsrA-binding protein binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1601 SSA_1602 SSA_1602 vacB vacB 1607112 1609460 - VacB/Rnb family exoribonuclease GC: 48.36%25%3B Codon Adaptation Index (CAI): 0.784. gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1602 SSA_1603 SSA_1603 SSA_1603 1609501 1610124 - hypothetical protein GC: 33.01%25%3B Codon Adaptation Index (CAI): 0.744. gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1603 SSA_1604 SSA_1604 secG secG 1610288 1610521 - preprotein translocase subunit SecG GC: 37.18%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.742. SignalP prediction: Yes (prob. 0.972)%3B Curator(s): J. Alves gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1604 SSA_1605 SSA_1605 pmrA pmrA 1610713 1611822 - major facilitator superfamily multi-drug resistance efflux pump PmrA GC: 48.02%25%3B Transporter classification TC:2.A.1.2.20. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.739. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1605 SSA_1606 SSA_1606 coaE coaE 1611919 1612515 - dephospho-CoA kinase catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1606 SSA_1607 SSA_1607 mutM mutM 1612521 1613345 - formamidopyrimidine-DNA glycosylase Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1607 SSA_1608 SSA_1608 SSA_1608 1613373 1613843 - hypothetical protein GC: 42.68%25%3B Codon Adaptation Index (CAI): 0.812. gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1608 SSA_1610 SSA_1610 SSA_1610 1614094 1614999 - hypothetical protein GC: 43.38%25%3B Codon Adaptation Index (CAI): 0.775. Helix-turn-helix prediction: AraC. gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1610 SSA_1611 SSA_1611 era era 1615223 1616122 - GTP-binding protein Era Era%3B Escherichia coli Ras-like protein%3B Bex%3B Bacillus Era-complementing segment%3B essential protein in Escherichia coli that is involved in many cellular processes%3B GTPase%3B binds the cell membrane through apparent C-terminal domain%3B mutants are arrested during the cell cycle%3B Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1611 SSA_1612 SSA_1612 dgk dgk 1616189 1616587 - diacylglycerol kinase GC: 44.36%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.772. gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1612 SSA_1613 SSA_1613 SSA_1613 1616568 1617065 - metalloprotease GC: 46.39%25%3B Codon Adaptation Index (CAI): 0.783. gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1613 SSA_1614 SSA_1614 SSA_1614 1617566 1618135 - acetyltransferase GC: 44.39%25%3B Codon Adaptation Index (CAI): 0.766. gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1614 SSA_1615 SSA_1615 SSA_1615 1618266 1619378 + alanine dehydrogenase GC: 49.33%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): J. Alves gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1615 SSA_1616 SSA_1616 phoH phoH 1619446 1620348 - PhoH-like protein GC: 47.4%25%3B Codon Adaptation Index (CAI): 0.795. gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1616 SSA_1617 SSA_1617 SSA_1617 1620526 1620741 - hypothetical protein GC: 43.52%25%3B Codon Adaptation Index (CAI): 0.79. gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1617 SSA_1618 SSA_1618 SSA_1618 1620810 1621664 - hypothetical protein GC: 48.77%25%3B Codon Adaptation Index (CAI): 0.795. Helix-turn-helix prediction: AraC. gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1618 SSA_1619 SSA_1619 frr frr 1621769 1622326 - ribosome recycling factor Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1619 SSA_1620 SSA_1620 pyrH pyrH 1622346 1623071 - uridylate kinase Catalyzes the phosphorylation of UMP to UDP gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1620 SSA_1621 SSA_1621 SSA_1621 1623262 1624713 - amino acid transporter GC: 46.42%25%3B Transporter classification TC:2.A.3.7.1. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.77. Curator(s): J. Alves gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1621 SSA_1622 SSA_1622 rplA rplA 1624842 1625531 - 50S ribosomal protein L1 in Escherichia coli and Methanococcus%2C this protein autoregulates expression%3B the binding site in the mRNA mimics the binding site in the 23S rRNA gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1622 SSA_1623 SSA_1623 rplK rplK 1625633 1626058 - 50S ribosomal protein L11 binds directly to 23S ribosomal RNA gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1623 SSA_1624 SSA_1624 SSA_1624 1626210 1626557 + hypothetical protein GC: 38.79%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.727. SignalP prediction: Yes (prob. 0.49). gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1624 SSA_1625 SSA_1625 SSA_1625 1626667 1627053 - lactoylglutathione lyase GC: 49.1%25%3B Codon Adaptation Index (CAI): 0.789. gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1625 SSA_1626 SSA_1626 ftsK ftsK 1627167 1629467 - DNA translocase ftsK GC: 48.15%25%3B Transporter classification TC:3.A.12.1.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.772. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1626 SSA_1627 SSA_1627 SSA_1627 1629598 1629780 - hypothetical protein GC: 43.72%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.796. gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1627 SSA_1628 SSA_1628 SSA_1628 1630004 1630423 + MutT/nudix family protein GC: 47.38%25%3B Codon Adaptation Index (CAI): 0.751. gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1628 SSA_1629 SSA_1629 ppiA ppiA 1630478 1631296 + cyclophilin type peptidyl-prolyl cis-trans isomerase GC: 44.2%25%3B Codon Adaptation Index (CAI): 0.792. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.903). gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1629 SSA_1630 SSA_1630 SSA_1630 1631332 1631568 + hypothetical protein GC: 43.88%25%3B Codon Adaptation Index (CAI): 0.805. Curator(s): T. Kitten gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1630 SSA_1631 SSA_1631 srtC srtC 1631741 1632628 - sortase GC: 39.86%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.762. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.568). gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1631 SSA_1632 SSA_1632 SSA_1632 1632696 1634135 - surface protein GC: 39.31%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.775. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1632 SSA_1633 SSA_1633 SSA_1633 1634196 1635635 - FimA fimbrial subunit-like protein GC: 39.1%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.761. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Possible cell surface protein similar to FimA fimbrial subunit. gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1633 SSA_1634 SSA_1634 SSA_1634 1635692 1637152 - Heme utilization/adhesion exoprotein GC: 40.45%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.755. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1634 SSA_1635 SSA_1635 SSA_1635 1637242 1639311 - hypothetical protein GC: 39.37%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.997)%3B Curator(s): T. Kitten %2C J. Alves gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1635 SSA_1636 SSA_1636 SSA_1636 1639454 1640995 - antibiotic ABC transporter ATPase GC: 50.06%25%3B Transporter classification TC:3.A.1.120.3. Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1636 SSA_1638 SSA_1638 SSA_1638 1641107 1641415 - hypothetical protein GC: 40.13%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.816. Curator(s): J. Alves gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1638 SSA_1639 SSA_1639 pfs pfs 1641429 1642121 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1639 SSA_1640 SSA_1640 SSA_1640 1642198 1642620 - hypothetical protein GC: 46.1%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791. gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1640 SSA_1641 SSA_1641 SSA_1641 1642633 1643184 - MutT/nudix family protein GC: 45.47%25%3B Codon Adaptation Index (CAI): 0.776. gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1641 SSA_1642 SSA_1642 glmU glmU 1643193 1644572 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1642 SSA_1643 SSA_1643 SSA_1643 1644700 1645359 - hypothetical protein GC: 40.76%25%3B Codon Adaptation Index (CAI): 0.81. gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1643 SSA_1644 SSA_1644 SSA_1644 1645561 1645707 - hypothetical protein GC: 35.37%25%3B Codon Adaptation Index (CAI): 0.725. gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1644 SSA_1645 SSA_1645 SSA_1645 1645691 1646317 - hypothetical protein GC: 42.9%25%3B Codon Adaptation Index (CAI): 0.762. gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1645 SSA_1646 SSA_1646 SSA_1646 1646412 1646861 - hypothetical protein GC: 47.33%25%3B Codon Adaptation Index (CAI): 0.789. gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1646 SSA_1647 SSA_1647 SSA_1647 1646912 1647259 - hypothetical protein GC: 37.93%25%3B Codon Adaptation Index (CAI): 0.806. gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1647 SSA_1648 SSA_1648 SSA_1648 1647256 1647999 - hypothetical protein GC: 46.24%25%3B Codon Adaptation Index (CAI): 0.764. gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1648 SSA_1649 SSA_1649 SSA_1649 1647996 1648976 - hypothetical protein GC: 43.02%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.589). gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1649 SSA_1650 SSA_1650 fabG fabG 1648986 1649684 - 3-ketoacyl-ACP reductase Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1650 SSA_1651 SSA_1651 SSA_1651 1649677 1649943 - hypothetical protein GC: 45.69%25%3B Codon Adaptation Index (CAI): 0.775. gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1651 SSA_1652 SSA_1652 SSA_1652 1650045 1650419 - acetyltransferase GC: 46.4%25%3B Codon Adaptation Index (CAI): 0.771. gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1652 SSA_1653 SSA_1653 SSA_1653 1650499 1651461 - hypothetical protein GC: 33.64%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.811). gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1653 SSA_1655 SSA_1655 SSA_1655 1651481 1651906 - hypothetical protein GC: 48.36%25%3B Codon Adaptation Index (CAI): 0.726. gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1655 SSA_1656 SSA_1656 SSA_1656 1651970 1652980 - nisin resistance protein GC: 42.63%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.767. gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1656 SSA_1657 SSA_1657 SSA_1657 1653052 1653321 - hypothetical protein GC: 40.37%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.78. SignalP prediction: Yes (prob. 0.744)%3B Curator(s): J. Alves gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1657 SSA_1658 SSA_1658 SSA_1658 1653364 1654764 - cationic amino acid transporter GC: 47.39%25%3B Transporter classification TC:2.A.3.3.1. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.761. SignalP prediction: Yes (prob. 0.969)%3B Curator(s): J. Alves gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1658 SSA_1659 SSA_1659 SSA_1659 1654921 1656909 - peptide ABC transporter permease GC: 36.85%25%3B Transporter classification TC:3.A.1.123.4. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.98)%3B Curator(s): J. Alves gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1659 SSA_1660 SSA_1660 SSA_1660 1656909 1657670 - peptide ABC transporter ATPase GC: 48.95%25%3B Transporter classification TC:3.A.1.123.4. Codon Adaptation Index (CAI): 0.752. Curator(s): J. Alves gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1660 SSA_1661 SSA_1661 SSA_1661 1657849 1658094 - hypothetical protein GC: 38.21%25%3B Codon Adaptation Index (CAI): 0.74. Curator(s): J. Alves gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1661 SSA_1662 SSA_1662 SSA_1662 1658325 1659512 - NADH-dependent oxidoreductase GC: 45.37%25%3B Codon Adaptation Index (CAI): 0.783. gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1662 SSA_1663 SSA_1663 cpbA cpbA 1659676 1664211 - collagen-binding protein A GC: 43.92%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.776. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): T. Kitten gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1663 SSA_1664 SSA_1664 SSA_1664 1664539 1665279 - phosphatidylethanolamine N-methyltransferase GC: 45.48%25%3B Codon Adaptation Index (CAI): 0.758. gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1664 SSA_1665 SSA_1665 SSA_1665 1665312 1665443 - hypothetical protein GC: 38.64%25%3B Codon Adaptation Index (CAI): 0.781. gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1665 SSA_1666 SSA_1666 SSA_1666 1665465 1667402 - collagen-binding surface protein GC: 45.05%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. SignalP prediction: Yes (prob. 0.999). gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1666 SSA_1667 SSA_1667 SSA_1667 1667609 1667794 - hypothetical protein GC: 44.09%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.733. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.799). gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1667 SSA_1668 SSA_1668 SSA_1668 1667828 1668181 - NrdI protein GC: 44.63%25%3B Codon Adaptation Index (CAI): 0.813. gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1668 SSA_1669 SSA_1669 SSA_1669 1668185 1668532 - hypothetical protein GC: 45.11%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.784. SignalP prediction: Yes (prob. 0.904). gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1669 SSA_1670 SSA_1670 SSA_1670 1668727 1669338 - TetR/AcrR family transcriptional regulator GC: 41.83%25%3B Codon Adaptation Index (CAI): 0.772. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1670 SSA_1671 SSA_1671 SSA_1671 1669444 1670397 + hypothetical protein GC: 42.35%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.766. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.993). gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1671 SSA_1672 SSA_1672 SSA_1672 1670381 1670479 - hypothetical protein GC: 37.37%25%3B Codon Adaptation Index (CAI): 0.773. gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1672 SSA_1673 SSA_1673 SSA_1673 1670493 1670663 + hypothetical protein GC: 38.6%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.747. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.613). gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1673 SSA_1675 SSA_1675 SSA_1675 1670686 1670907 + hypothetical protein GC: 41.44%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.714. gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1675 SSA_1676 SSA_1676 SSA_1676 1670948 1671403 - LytTr family transcriptional regulator GC: 45.18%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): J. Alves gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1676 SSA_1678 SSA_1678 cylB cylB 1671426 1672271 - multidrig ABC transporter permease GC: 43.03%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.73. Curator(s): J. Alves gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1678 SSA_1679 SSA_1679 cylA cylA 1672273 1673139 - multidrig ABC transporter ATPase GC: 47.64%25%3B Transporter classification TC:3.A.1.105.1. Codon Adaptation Index (CAI): 0.758. Curator(s): J. Alves gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1679 SSA_1680 SSA_1680 SSA_1680 1673290 1675290 - antibiotic ABC transporter permease GC: 43.68%25%3B Transporter classification TC:3.A.1.123.4. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.774. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.981)%3B Curator(s): J. Alves gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1680 SSA_1681 SSA_1681 SSA_1681 1675271 1676050 - antibiotic ABC transporter ATPase GC: 48.46%25%3B Transporter classification TC:3.A.1.123.4. Codon Adaptation Index (CAI): 0.754. Curator(s): J. Alves gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1681 SSA_1682 SSA_1682 SSA_1682 1676220 1676975 - hypothetical protein GC: 45.77%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.733. gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1682 SSA_1683 SSA_1683 SSA_1683 1677124 1677495 - NrdI protein GC: 45.7%25%3B Codon Adaptation Index (CAI): 0.785. gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1683 SSA_1684 SSA_1684 SSA_1684 1677516 1678496 - histidine kinase GC: 44.04%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.792. SignalP prediction: Yes (prob. 0.717). gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1684 SSA_1685 SSA_1685 SSA_1685 1678480 1679166 - two-component response transcriptional regulator GC: 45.71%25%3B Codon Adaptation Index (CAI): 0.762. Curator(s): J. Alves gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1685 SSA_1686 SSA_1686 SSA_1686 1679316 1680530 + hypothetical protein GC: 46.67%25%3B Codon Adaptation Index (CAI): 0.774. gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1686 SSA_1687 SSA_1687 SSA_1687 1680687 1681883 + NADH-binding ferric-oxidoreductase GC: 45.03%25%3B Transporter classification TC:1.A.20.6.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.769. SignalP prediction: Yes (prob. 0.978)%3B Curator(s): J. Alves gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1687 SSA_1689 SSA_1689 SSA_1689 1682035 1682595 - hypothetical protein GC: 36.19%25%3B Codon Adaptation Index (CAI): 0.798. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Weakly similar to apolipoprotein domains. Curator(s): J. Alves gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1689 SSA_1690 SSA_1690 SSA_1690 1682881 1683408 + hypothetical protein GC: 36.93%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.761. gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1690 SSA_1691 SSA_1691 SSA_1691 1683421 1683630 + XRE family transcriptional regulator GC: 43.81%25%3B Codon Adaptation Index (CAI): 0.808. Curator(s): J. Alves gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1691 SSA_1692 SSA_1692 lacG lacG 1683690 1685096 - 6-phospho-beta-galactosidase catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1692 SSA_1693 SSA_1693 lacE lacE 1685195 1686901 - phosphotransferase system lactose-specific component IIBC GC: 45.28%25%3B Transporter classification TC:4.A.3.1.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.776. Curator(s): J. Alves gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1693 SSA_1694 SSA_1694 lacF lacF 1686901 1687218 - PTS system lactose-specific transporter subunit IIA GC: 44.34%25%3B Transporter classification TC:4.A.3.1.1. Codon Adaptation Index (CAI): 0.761. gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1694 SSA_1695 SSA_1695 SSA_1695 1687267 1688100 - BglG family transcriptional antiterminator GC: 43.29%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): J. Alves gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1695 SSA_1696 SSA_1696 lacD lacD 1688297 1689277 - tagatose 1%2C6-diphosphate aldolase catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase%2C encoded by lacD1 and lacD2%3B expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1696 SSA_1697 SSA_1697 lacC lacC 1689281 1690210 - tagatose-6-phosphate kinase catalyzes the formation of tagatose 1%2C6-bisphosphate from tagatose 6-phosphate and ATP gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1697 SSA_1698 SSA_1698 lacB lacB 1690223 1690738 - galactose-6-phosphate isomerase subunit LacB catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1698 SSA_1699 SSA_1699 lacA lacA 1690755 1691186 - galactose-6-phosphate isomerase subunit LacA catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate%3B tagatose pathway for galactose utilization gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1699 SSA_1700 SSA_1700 SSA_1700 1691265 1691378 - hypothetical protein GC: 17.54%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.757. Curator(s): J. Alves gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1700 SSA_1701 SSA_1701 lacR lacR 1691389 1692144 - sugar metabolism transcriptional repressor GC: 44.58%25%3B Codon Adaptation Index (CAI): 0.797. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1701 SSA_1702 SSA_1702 SSA_1702 1692287 1693552 - hypothetical protein GC: 32.7%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.779. SignalP prediction: Yes (prob. 0.577)%3B Curator(s): J. Alves gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1702 SSA_1703 SSA_1703 metS metS 1693730 1695730 - methionyl-tRNA synthetase methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1703 SSA_1704 SSA_1704 SSA_1704 1695859 1696491 - hypothetical protein GC: 43.13%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.751. Possibly membrane-spanning protein. Curator(s): J. Alves gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1704 SSA_1705 SSA_1705 SSA_1705 1696488 1696943 - hypothetical protein GC: 40.79%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.791. SignalP prediction: Yes (prob. 0.473). gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1705 SSA_1706 SSA_1706 exoA exoA 1696942 1697910 + exodeoxyribonuclease GC: 45.2%25%3B Codon Adaptation Index (CAI): 0.754. gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1706 SSA_1707 SSA_1707 SSA_1707 1697922 1698308 + hypothetical protein GC: 43.15%25%3B Codon Adaptation Index (CAI): 0.768. gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1707 SSA_1708 SSA_1708 SSA_1708 1698284 1698409 - hypothetical protein GC: 34.13%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.756. gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1708 SSA_1709 SSA_1709 SSA_1709 1698403 1698504 - hypothetical protein GC: 31.37%25%3B Codon Adaptation Index (CAI): 0.778. gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1709 SSA_1710 SSA_1710 SSA_1710 1698478 1699071 + XRE family transcriptional regulator GC: 39.56%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.788. Curator(s): J. Alves gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1710 SSA_1711 SSA_1711 nth nth 1699097 1699726 - endonuclease III GC: 47.94%25%3B Codon Adaptation Index (CAI): 0.773. gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1711 SSA_1712 SSA_1712 SSA_1712 1699821 1700174 - arsenate reductase GC: 44.63%25%3B Codon Adaptation Index (CAI): 0.754. Curator(s): J. Alves gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1712 SSA_1713 SSA_1713 serA serA 1700299 1701474 - D-3-phosphoglycerate dehydrogenase GC: 46.26%25%3B Codon Adaptation Index (CAI): 0.79. gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1713 SSA_1715 SSA_1715 serC serC 1701487 1702578 - phosphoserine aminotransferase catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1715 SSA_1716 SSA_1716 SSA_1716 1702780 1703706 - restriction endonuclease SsuRB GC: 35.49%25%3B Codon Adaptation Index (CAI): 0.805. gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1716 SSA_1717 SSA_1717 spnIM spnIM 1704245 1705048 - modification methylase DpnIIB GC: 37.19%25%3B Codon Adaptation Index (CAI): 0.796. gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1717 SSA_1718 SSA_1718 dam dam 1705041 1705901 - site-specific DNA-methyltransferase GC: 37.28%25%3B Codon Adaptation Index (CAI): 0.764. gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1718 SSA_1719 SSA_1719 SSA_1719 1706014 1706883 - hypothetical protein GC: 46.44%25%3B Codon Adaptation Index (CAI): 0.769. Helix-turn-helix prediction: AraC. gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1719 SSA_1720 SSA_1720 SSA_1720 1706886 1707203 - DNA replication intiation control protein YabA in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation%3B interacts with DnaN and DnaA gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1720 SSA_1721 SSA_1721 holB holB 1707228 1708118 - DNA polymerase III subunit delta' catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1721 SSA_1722 SSA_1722 tmk tmk 1708115 1708753 - thymidylate kinase catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1722 SSA_1723 SSA_1723 SSA_1723 1709066 1709953 + hypothetical protein GC: 43.47%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.759. gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1723 SSA_1724 SSA_1724 SSA_1724 1709987 1710643 - hypothetical protein GC: 43.53%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): J. Alves gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1724 SSA_1725 SSA_1725 livF livF 1711083 1711793 - branched chain amino acid ABC transporter ATP-binding protein GC: 45.85%25%3B Transporter classification TC:3.A.1.4.1. Codon Adaptation Index (CAI): 0.817. gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1725 SSA_1726 SSA_1726 livG livG 1711793 1712557 - branched chain amino acid ABC transporter ATP-binding protein GC: 45.75%25%3B Transporter classification TC:3.A.1.4.1. Codon Adaptation Index (CAI): 0.778. gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1726 SSA_1727 SSA_1727 livM livM 1712557 1713510 - branched-chain amino acid ABC transporter permease GC: 43.92%25%3B Transporter classification TC:3.A.1.4.1. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.784. SignalP prediction: Yes (prob. 0.998). gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1727 SSA_1728 SSA_1728 livH livH 1713514 1714383 - branched-chain amino acid ABC transporter permease GC: 43.91%25%3B Transporter classification TC:3.A.1.4.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.772. gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1728 SSA_1729 SSA_1729 livJ livJ 1714629 1715789 - branched-chain amino acid ABC transporter substrate-binding protein GC: 41.52%25%3B Transporter classification TC:3.A.1.4.1. Codon Adaptation Index (CAI): 0.807. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1729 SSA_1730 SSA_1730 SSA_1730 1715878 1716147 - hypothetical protein GC: 39.26%25%3B Codon Adaptation Index (CAI): 0.755. gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1730 SSA_1731 SSA_1731 clpP clpP 1716308 1716898 - ATP-dependent Clp protease proteolytic subunit hydrolyzes proteins to small peptides%3B with the ATPase subunits ClpA or ClpX%2C ClpP degrades specific substrates gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1731 SSA_1732 SSA_1732 upp upp 1717006 1717635 - uracil phosphoribosyltransferase Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1732 SSA_1733 SSA_1733 SSA_1733 1717634 1717738 + hypothetical protein GC: 29.52%25%3B Codon Adaptation Index (CAI): 0.739. gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1733 SSA_1734 SSA_1734 SSA_1734 1717733 1720393 - cation (Mg/Ni uptake) transport ATPase GC: 45.02%25%3B Transporter classification TC:3.A.3.4.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.787. gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1734 SSA_1735 SSA_1735 SSA_1735 1720551 1721162 - UreX GC: 35.78%25%3B Codon Adaptation Index (CAI): 0.798. gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1735 SSA_1736 SSA_1736 SSA_1736 1721543 1722709 - L-cysteine desulfhydrase GC: 45.5%25%3B Codon Adaptation Index (CAI): 0.794. gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1736 SSA_1737 SSA_1737 metB metB 1722711 1723868 - cystathionine gamma-synthase catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1737 SSA_1738 SSA_1738 SSA_1738 1723965 1725593 - polysaccharide biosynthesis protein GC: 45.86%25%3B Transmembrane domains: 14. Codon Adaptation Index (CAI): 0.784. gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1738 SSA_1739 SSA_1739 murE murE 1725680 1727125 + UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1739 SSA_1740 SSA_1740 SSA_1740 1727171 1727956 - hypothetical protein GC: 44.4%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.769. gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1740 SSA_1741 SSA_1741 SSA_1741 1728147 1728932 + Fe3+-siderophores ABC transporter ATPase GC: 48.73%25%3B Transporter classification TC:3.A.1.14.7. Codon Adaptation Index (CAI): 0.783. Curator(s): J. Alves gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1741 SSA_1742 SSA_1742 SSA_1742 1729012 1729947 + ferrichrome-binding protein GC: 40.81%25%3B Transporter classification TC:3.A.1.14.7. Codon Adaptation Index (CAI): 0.778. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1742 SSA_1743 SSA_1743 fhuB fhuB 1730310 1731065 + Fe3+-siderophore ABC transporter permease GC: 47.75%25%3B Transporter classification TC:3.A.1.14.7. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.719. gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1743 SSA_1744 SSA_1744 SSA_1744 1731055 1732059 + iron ABC transporter permease GC: 46.67%25%3B Transporter classification TC:3.A.1.14.5. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.736. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1744 SSA_1745 SSA_1745 csbD csbD 1732087 1732281 - general stress response protein CsbD GC: 39.49%25%3B Codon Adaptation Index (CAI): 0.856. Curator(s): J. Alves gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1745 SSA_1746 SSA_1746 SSA_1746 1732382 1733035 - hypothetical protein GC: 45.72%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1746 SSA_1747 SSA_1747 SSA_1747 1733028 1733540 - hypothetical protein GC: 41.33%25%3B Codon Adaptation Index (CAI): 0.782. gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1747 SSA_1748 SSA_1748 ppx ppx 1733633 1734568 - manganese-dependent inorganic pyrophosphatase catalyzes the hydrolysis of pyrophosphate to phosphate gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1748 SSA_1749 SSA_1749 pflA pflA 1734707 1735516 - pyruvate formate-lyase-activating enzyme GC: 45.93%25%3B Codon Adaptation Index (CAI): 0.818. gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1749 SSA_1750 SSA_1750 SSA_1750 1735763 1738012 - extracellular nuclease GC: 46.58%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.775. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Helix-turn-helix prediction: AraC. gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1750 SSA_1751 SSA_1751 dexS dexS 1738200 1739891 - dextran glucosidase GC: 45.8%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): J. Alves gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1751 SSA_1752 SSA_1752 SSA_1752 1739902 1741965 - phosphotransferase system%2C trehalose-specific IIBC component GC: 44.53%25%3B Transporter classification TC:4.A.1.2.4. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.774. gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1752 SSA_1753 SSA_1753 treR treR 1742084 1742800 + GntR family transcriptional regulator GC: 44.91%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): J. Alves gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1753 SSA_1754 SSA_1754 SSA_1754 1743215 1743568 - hypothetical protein GC: 33.62%25%3B Codon Adaptation Index (CAI): 0.711. gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1754 SSA_1755 SSA_1755 SSA_1755 1743565 1743858 - hypothetical protein GC: 39.12%25%3B Codon Adaptation Index (CAI): 0.768. gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1755 SSA_1756 SSA_1756 SSA_1756 1743867 1745381 - hypothetical protein GC: 41.58%25%3B Codon Adaptation Index (CAI): 0.773. Curator(s): J. Alves gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1756 SSA_1757 SSA_1757 SSA_1757 1745372 1745980 - hypothetical protein GC: 38.59%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.76. SignalP prediction: Yes (prob. 0.671)%3B Curator(s): J. Alves gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1757 SSA_1758 SSA_1758 SSA_1758 1746101 1746709 - hypothetical protein GC: 33.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.768. SignalP prediction: Yes (prob. 0.48). gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1758 SSA_1759 SSA_1759 SSA_1759 1746754 1747059 - hypothetical protein GC: 33.33%25%3B Codon Adaptation Index (CAI): 0.832. gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1759 SSA_1760 SSA_1760 SSA_1760 1747216 1747374 - hypothetical protein GC: 35.22%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.77. SignalP prediction: Yes (prob. 0.466)%3B Curator(s): J. Alves gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1760 SSA_1761 SSA_1761 hlyX hlyX 1747527 1748867 - hemolysin GC: 44.3%25%3B Transporter classification TC:9.B.37.2.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.52)%3B Curator(s): J. Alves gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1761 SSA_1762 SSA_1762 SSA_1762 1749018 1750142 - permease GC: 42.76%25%3B Transporter classification TC:9.B.22.1.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.775. Curator(s): J. Alves gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1762 SSA_1763 SSA_1763 SSA_1763 1750217 1751011 + molybdenum ABC transporter ATPase GC: 48.81%25%3B Transporter classification TC:3.A.1.14.3. Codon Adaptation Index (CAI): 0.773. Curator(s): J. Alves gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1763 SSA_1764 SSA_1764 SSA_1764 1751008 1752570 + hypothetical protein GC: 45.87%25%3B Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.748. SignalP prediction: Yes (prob. 0.712). gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1764 SSA_1765 SSA_1765 SSA_1765 1753176 1753940 + hypothetical protein GC: 30.98%25%3B Codon Adaptation Index (CAI): 0.776. gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1765 SSA_1766 SSA_1766 SSA_1766 1754478 1755221 - bacitracin ABC transporter permease GC: 36.42%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.748. gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1766 SSA_1767 SSA_1767 SSA_1767 1755240 1756193 - bacitracin ABC transporter ATP-binding protein GC: 32.18%25%3B Transporter classification TC:3.A.1.124.2. Codon Adaptation Index (CAI): 0.743. gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1767 SSA_1768 SSA_1768 SSA_1768 1756193 1756789 - TetR/AcrR family transcriptional regulator GC: 32.5%25%3B Codon Adaptation Index (CAI): 0.76. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1768 SSA_1769 SSA_1769 SSA_1769 1757029 1757580 - hypothetical protein GC: 50%25%3B Codon Adaptation Index (CAI): 0.766. gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1769 SSA_1770 SSA_1770 SSA_1770 1757574 1758521 - hypothetical protein GC: 49.16%25%3B Codon Adaptation Index (CAI): 0.768. gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1770 SSA_1771 SSA_1771 SSA_1771 1758581 1758889 - DNA methyltransferase protein GC: 51.13%25%3B Codon Adaptation Index (CAI): 0.766. gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1771 SSA_1772 SSA_1772 SSA_1772 1758985 1759635 - hypothetical protein GC: 45.16%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.748. gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1772 SSA_1773 SSA_1773 SSA_1773 1759625 1760182 - hypothetical protein GC: 37.99%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.721. SignalP prediction: Yes (prob. 0.564). gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1773 SSA_1774 SSA_1774 cspR cspR 1760579 1761133 - rRNA methylase GC: 42.7%25%3B Codon Adaptation Index (CAI): 0.802. gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1774 SSA_1775 SSA_1775 trkA trkA 1761424 1762773 + potassium transporter peripheral membrane protein involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1775 SSA_1776 SSA_1776 trkH trkH 1762779 1764218 + Trk family potassium uptake protein GC: 47.29%25%3B Transporter classification TC:2.A.38.1.1. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.732. gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1776 SSA_1777 SSA_1777 rluB rluB 1764517 1765245 - ribosomal large subunit pseudouridine synthase B GC: 49.93%25%3B Codon Adaptation Index (CAI): 0.767. gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1777 SSA_1778 SSA_1778 scpB scpB 1765232 1765801 - segregation and condensation protein B functions during chromosome segregation%3B may form a condensin-like structure with SMC and ScpA%3B forms a homodimer gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1778 SSA_1779 SSA_1779 scpA scpA 1765794 1766504 - segregation and condensation protein A functions during chromosome segregation%3B may form a condensin-like structure with SMC and ScpB gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1779 SSA_1780 SSA_1780 xerD xerD 1766506 1767237 - site-specific tyrosine recombinase XerD site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1780 SSA_1781 SSA_1781 SSA_1781 1767234 1767695 - hypothetical protein GC: 43.07%25%3B Codon Adaptation Index (CAI): 0.796. gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1781 SSA_1782 SSA_1782 SSA_1782 1767692 1768213 - hypothetical protein GC: 45.59%25%3B Codon Adaptation Index (CAI): 0.752. gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1782 SSA_1783 SSA_1783 SSA_1783 1768192 1769196 - deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1783 SSA_1784 SSA_1784 murI murI 1769193 1769987 - glutamate racemase converts L-glutamate to D-glutamate%2C a component of peptidoglycan gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1784 SSA_1786 SSA_1786 SSA_1786 1770086 1770334 - hypothetical protein GC: 41.37%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1786 SSA_1787 SSA_1787 lysA lysA 1770391 1771641 - diaminopimelate decarboxylase GC: 46.68%25%3B Codon Adaptation Index (CAI): 0.806. gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1787 SSA_1788 SSA_1788 SSA_1788 1771746 1772429 - integral membrane protein%2C receptor GC: 42.11%25%3B Transporter classification TC:9.B.24.2.2. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.785. Curator(s): J. Alves gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1788 SSA_1789 SSA_1789 SSA_1789 1772455 1772946 - HD superfamily metal-dependent phosphohydrolase GC: 45.93%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1789 SSA_1790 SSA_1790 SSA_1790 1772991 1773731 - SpoU rRNA methylase family protein GC: 43.72%25%3B Codon Adaptation Index (CAI): 0.767. gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1790 SSA_1791 SSA_1791 acyP acyP 1773816 1774094 + acylphosphatase catalyzes the hydrolysis of acylphosphate gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1791 SSA_1792 SSA_1792 yidC yidC 1774176 1775099 + OxaA-like protein precursor involved in biogenesis of membrane proteins%3B Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1792 SSA_1793 SSA_1793 SSA_1793 1775216 1776451 - histidine kinase (sensor protein) GC: 42.8%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.77. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1793 SSA_1794 SSA_1794 SSA_1794 1776435 1777139 - two-component response transcriptional regulator GC: 48.37%25%3B Codon Adaptation Index (CAI): 0.795. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1794 SSA_1795 SSA_1795 SSA_1795 1777141 1777761 - guanosine 3'%2C5'-bis-pyrophosphate (ppGpp) synthetase GC: 46.38%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): J. Alves gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1795 SSA_1796 SSA_1796 greA greA 1777915 1778397 - transcription elongation factor GreA necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1796 SSA_1797 SSA_1797 pabC pabC 1778538 1780037 - aminodeoxychorismate lyase GC: 44.27%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. Helix-turn-helix prediction: AraC. gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1797 SSA_1798 SSA_1798 SSA_1798 1780088 1780603 - hypothetical protein GC: 44.38%25%3B Codon Adaptation Index (CAI): 0.802. gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1798 SSA_1799 SSA_1799 SSA_1799 1780603 1781115 - acetyltransferase GC: 46.78%25%3B Codon Adaptation Index (CAI): 0.774. gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1799 SSA_1800 SSA_1800 murC murC 1781127 1782461 - UDP-N-acetylmuramate--L-alanine ligase Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1800 SSA_1801 SSA_1801 SSA_1801 1782742 1783404 - hypothetical protein GC: 44.95%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1801 SSA_1802 SSA_1802 snf snf 1783459 1786560 - Snf2 family protein GC: 45.39%25%3B Codon Adaptation Index (CAI): 0.785. gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1802 SSA_1803 SSA_1803 engA engA 1786689 1787999 - GTP-binding protein EngA EngA%3B essential Neisserial GTPase%3B synchronizes cellular events by interacting with multiple targets with tandem G-domains%3B overexpression in Escherichia coli suppresses rrmJ mutation%3B structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1803 SSA_1804 SSA_1804 SSA_1804 1788042 1788758 - NADPH-flavin oxidoreductase GC: 46.3%25%3B Codon Adaptation Index (CAI): 0.769. gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1804 SSA_1805 SSA_1805 dnaI dnaI 1788755 1789654 - primosomal protein DnaI Primosomal protein that may act to load helicase DnaC during DNA replication gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1805 SSA_1806 SSA_1806 dnaB dnaB 1789655 1790839 - replication initiation/membrane attachment protein DnaB GC: 30.63%25%3B Codon Adaptation Index (CAI): 0.786. Curator(s): J. Alves gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1806 SSA_1807 SSA_1807 nrdR nrdR 1790840 1791313 - NrdR family transcriptional regulator GC: 45.78%25%3B Codon Adaptation Index (CAI): 0.771. gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1807 SSA_1808 SSA_1808 rgfB rgfB 1791484 1792299 - hypothetical protein GC: 45.34%25%3B Codon Adaptation Index (CAI): 0.786. gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1808 SSA_1809 SSA_1809 ptsG ptsG 1792317 1794509 - PTS system glucose-specific EIIC BA component (EIICBA-Glc) (EII- Glc/EIII-Glc) GC: 43.23%25%3B Transporter classification TC:4.A.1.1.2. Transmembrane domains: 9. Codon Adaptation Index (CAI): 0.798. gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1809 SSA_1810 SSA_1810 csrR csrR 1794797 1795486 - two-component response transcriptional regulator GC: 45.51%25%3B Codon Adaptation Index (CAI): 0.8. Curator(s): J. Alves gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1810 SSA_1811 SSA_1811 gnd gnd 1795496 1796920 - 6-phosphogluconate dehydrogenase catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1811 SSA_1812 SSA_1812 SSA_1812 1797198 1798424 - modification methylase GC: 29.83%25%3B Codon Adaptation Index (CAI): 0.737. gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1812 SSA_1813 SSA_1813 SSA_1813 1798463 1799392 - hypothetical protein GC: 30.65%25%3B Codon Adaptation Index (CAI): 0.735. gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1813 SSA_1814 SSA_1814 SSA_1814 1799389 1800069 - hypothetical protein GC: 32.6%25%3B Codon Adaptation Index (CAI): 0.756. gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1814 SSA_1815 SSA_1815 SSA_1815 1800073 1801002 - hypothetical protein GC: 32.15%25%3B Codon Adaptation Index (CAI): 0.765. gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1815 SSA_1816 SSA_1816 SSA_1816 1801017 1802975 - hypothetical protein GC: 34.25%25%3B Codon Adaptation Index (CAI): 0.751. gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1816 SSA_1817 SSA_1817 SSA_1817 1802968 1805685 - hypothetical protein GC: 33.48%25%3B Codon Adaptation Index (CAI): 0.75. Curator(s): J. Alves gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1817 SSA_1818 SSA_1818 SSA_1818 1805745 1806200 - very short patch repair endonuclease GC: 36.84%25%3B Codon Adaptation Index (CAI): 0.772. gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1818 SSA_1819 SSA_1819 valS valS 1806285 1808957 - valyl-tRNA synthetase valine--tRNA ligase%3B ValRS%3B converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val)%3B class-I aminoacyl-tRNA synthetase type 1 subfamily%3B has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1819 SSA_1820 SSA_1820 SSA_1820 1808959 1809912 - hypothetical protein GC: 24.74%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.715. gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1820 SSA_1821 SSA_1821 rimL rimL 1810137 1810700 - ribosomal protein N-acetylase GC: 48.4%25%3B Codon Adaptation Index (CAI): 0.73. Curator(s): J. Alves gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1821 SSA_1822 SSA_1822 SSA_1822 1810961 1811215 - hypothetical protein GC: 47.84%25%3B Codon Adaptation Index (CAI): 0.764. gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1822 SSA_1823 SSA_1823 SSA_1823 1811242 1812603 - hypothetical protein GC: 49.12%25%3B Codon Adaptation Index (CAI): 0.763. Curator(s): J. Alves gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1823 SSA_1824 SSA_1824 SSA_1824 1812606 1812836 - hypothetical protein GC: 42.42%25%3B Codon Adaptation Index (CAI): 0.806. gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1824 SSA_1825 SSA_1825 SSA_1825 1813091 1814518 + hypothetical protein GC: 43.14%25%3B Codon Adaptation Index (CAI): 0.768. Helix-turn-helix prediction: AraC. gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1825 SSA_1826 SSA_1826 glpK glpK 1814676 1816184 + glycerol kinase Converts glycerol and ADP to glycerol-3-phosphate and ADP gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1826 SSA_1827 SSA_1827 glp glp 1816252 1818078 + alpha-glycerophosphate oxidase GC: 48.17%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.769. SignalP prediction: Yes (prob. 0.943). gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1827 SSA_1828 SSA_1828 glpF glpF 1818147 1818851 + glycerol uptake facilitator protein GC: 48.23%25%3B Transporter classification TC:1.A.8.2.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.766. gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1828 SSA_1829 SSA_1829 SSA_1829 1819049 1820419 - RNA methyltransferase GC: 48.65%25%3B Codon Adaptation Index (CAI): 0.766. gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1829 SSA_1830 SSA_1830 SSA_1830 1820475 1821251 + aminoglycoside phosphotransferase GC: 46.2%25%3B Codon Adaptation Index (CAI): 0.717. gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1830 SSA_1831 SSA_1831 recX recX 1821278 1822054 + recombination regulator RecX binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1831 SSA_1832 SSA_1832 SSA_1832 1822141 1822674 + hypothetical protein GC: 37.83%25%3B Codon Adaptation Index (CAI): 0.802. gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1832 SSA_1833 SSA_1833 SSA_1833 1822802 1823119 + hypothetical protein GC: 38.36%25%3B Codon Adaptation Index (CAI): 0.729. gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1833 SSA_1834 SSA_1834 raiA raiA 1829742 1830284 - 30S ribosomal interface protein S30EA GC: 41.07%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1834 SSA_1835 SSA_1835 comFC comFC 1830366 1831031 - late competence protein GC: 38.14%25%3B Codon Adaptation Index (CAI): 0.779. gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1835 SSA_1836 SSA_1836 comFA comFA 1831028 1832326 - superfamily II ATP-dependent DNA/RNA helicase GC: 42.57%25%3B Transporter classification TC:3.A.11.1.1. Codon Adaptation Index (CAI): 0.761. Curator(s): J. Alves gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1836 SSA_1837 SSA_1837 SSA_1837 1832383 1833015 + hypothetical protein GC: 42.5%25%3B Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1837 SSA_1839 SSA_1839 cysK cysK 1833116 1834045 + cysteine synthase GC: 47.42%25%3B Codon Adaptation Index (CAI): 0.797. gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1839 SSA_1840 SSA_1840 SSA_1840 1834150 1834512 - hypothetical protein GC: 40.22%25%3B Codon Adaptation Index (CAI): 0.814. Contains ribosomal protein S1 domain. gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1840 SSA_1841 SSA_1841 pplB pplB 1834512 1835912 - Cof family protein/peptidyl-prolyl cis-trans isomerase%2C cyclophilin type GC: 44.97%25%3B Codon Adaptation Index (CAI): 0.799. gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1841 SSA_1842 SSA_1842 SSA_1842 1835952 1836584 - two-component response transcriptional regulator GC: 43.92%25%3B Codon Adaptation Index (CAI): 0.789. Curator(s): J. Alves gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1842 SSA_1843 SSA_1843 SSA_1843 1836562 1837581 - histidine kinase GC: 43.04%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.767. gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1843 SSA_1844 SSA_1844 SSA_1844 1837578 1838273 - hypothetical protein GC: 40.52%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.787. gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1844 SSA_1845 SSA_1845 pkn pkn 1838418 1840271 - serine/threonine protein kinase GC: 45.95%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.786. gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1845 SSA_1846 SSA_1846 pppL pppL 1840268 1841008 - phosphoprotein phosphatase GC: 43.99%25%3B Codon Adaptation Index (CAI): 0.817. gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1846 SSA_1847 SSA_1847 sunL sunL 1841027 1842094 - rRNA methyltransferase RsmB GC: 44.29%25%3B Codon Adaptation Index (CAI): 0.748. gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1847 SSA_1848 SSA_1848 fmt fmt 1842333 1843268 - methionyl-tRNA formyltransferase modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1848 SSA_1849 SSA_1849 priA priA 1843352 1845739 - primosome assembly protein PriA binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1849 SSA_1850 SSA_1850 rpoZ rpoZ 1845800 1846114 - DNA-directed RNA polymerase subunit omega Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1850 SSA_1851 SSA_1851 gmk gmk 1846140 1846772 - guanylate kinase Essential for recycling GMP and indirectly%2C cGMP gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1851 SSA_1852 SSA_1852 SSA_1852 1846959 1848572 - hypothetical protein GC: 45.85%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. SignalP prediction: Yes (prob. 0.542)%3B Curator(s): J. Alves gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1852 SSA_1853 SSA_1853 luxS luxS 1848782 1849420 + S-ribosylhomocysteine lyase GC: 43.82%25%3B Codon Adaptation Index (CAI): 0.802. gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1853 SSA_1854 SSA_1854 SSA_1854 1849523 1850974 - hypothetical protein GC: 45.39%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1854 SSA_1855 SSA_1855 SSA_1855 1850987 1852141 - hypothetical protein GC: 45.37%25%3B Codon Adaptation Index (CAI): 0.803. gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1855 SSA_1856 SSA_1856 SSA_1856 1852167 1852298 - hypothetical protein GC: 41.67%25%3B Codon Adaptation Index (CAI): 0.706. gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1856 SSA_1857 SSA_1857 SSA_1857 1852815 1853177 - DivIVA domain-containing protein GC: 42.7%25%3B Codon Adaptation Index (CAI): 0.82. Curator(s): J. Alves gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1857 SSA_1858 SSA_1858 SSA_1858 1853249 1853776 - hypothetical protein GC: 35.61%25%3B Codon Adaptation Index (CAI): 0.779. gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1858 SSA_1859 SSA_1859 recU recU 1853844 1854446 + Holliday junction-specific endonuclease functions in homologous recombination%2C DNA repair%2C and chromosome segregation%3B binds preferentially to three- and four-stranded DNA intermediates%3B introduces specific nick sites in four-stranded DNA substrates%3B functions similarly to Escherichia coli RuvC gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1859 SSA_1860 SSA_1860 pbp1A pbp1A 1854439 1856580 + penicillin-binding protein 1A GC: 45.28%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.775. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.699). gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1860 SSA_1861 SSA_1861 pepC pepC 1856658 1857992 - aminopeptidase GC: 45.62%25%3B Codon Adaptation Index (CAI): 0.79. gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1861 SSA_1862 SSA_1862 SSA_1862 1858071 1858631 - hypothetical protein GC: 43.49%25%3B Codon Adaptation Index (CAI): 0.794. gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1862 SSA_1863 SSA_1863 nadE nadE 1858679 1859503 - NAD synthetase catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1863 SSA_1864 SSA_1864 pncB pncB 1859500 1860960 - nicotinate phosphoribosyltransferase catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1864 SSA_1865 SSA_1865 SSA_1865 1861068 1861982 - thioredoxin reductase GC: 48.63%25%3B Codon Adaptation Index (CAI): 0.781. gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1865 SSA_1866 SSA_1866 SSA_1866 1862048 1862272 - hypothetical protein GC: 44.44%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.767. gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1866 SSA_1867 SSA_1867 SSA_1867 1862443 1863186 - polar amino acid ABC transporter ATPase GC: 44.09%25%3B Transporter classification TC:3.A.1.3.13. Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1867 SSA_1868 SSA_1868 SSA_1868 1863186 1863992 - arginine/histidine ABC transporter permease GC: 45.85%25%3B Transporter classification TC:3.A.1.3.13. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.771. Curator(s): J. Alves gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1868 SSA_1869 SSA_1869 rheB rheB 1864242 1865585 - ATP-dependent RNA helicase GC: 48.44%25%3B Codon Adaptation Index (CAI): 0.781. gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1869 SSA_1870 SSA_1870 mraY mraY 1865690 1866673 - phospho-N-acetylmuramoyl-pentapeptide-transferase First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1870 SSA_1871 SSA_1871 pbpX pbpX 1866675 1868963 - penicillin-binding protein 2X GC: 45.35%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.924). gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1871 SSA_1872 SSA_1872 ftsL ftsL 1868953 1869276 - cell division protein GC: 44.44%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.775. gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1872 SSA_1873 SSA_1873 mraW mraW 1869284 1870234 - S-adenosyl-methyltransferase MraW GC: 47.32%25%3B Codon Adaptation Index (CAI): 0.792. gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1873 SSA_1874 SSA_1874 yorfE yorfE 1870435 1870650 + hypothetical protein GC: 43.52%25%3B Codon Adaptation Index (CAI): 0.739. gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1874 SSA_1875 SSA_1875 SSA_1875 1870698 1871228 + hypothetical protein GC: 38.61%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.742. gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1875 SSA_1876 SSA_1876 SSA_1876 1871260 1871802 + hypothetical protein GC: 41.62%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.746. gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1876 SSA_1877 SSA_1877 SSA_1877 1871799 1871975 + hypothetical protein GC: 37.85%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.774. Helix-turn-helix prediction: AraC. gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1877 SSA_1878 SSA_1878 SSA_1878 1872033 1872290 - hypothetical protein GC: 44.19%25%3B Codon Adaptation Index (CAI): 0.841. gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1878 SSA_1879 SSA_1879 glyS glyS 1872313 1874352 - glycyl-tRNA synthetase subunit beta glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1879 SSA_1880 SSA_1880 glyQ glyQ 1874355 1875272 - glycyl-tRNA synthetase subunit alpha glycine--tRNA ligase alpha chain%3B GlyRS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1880 SSA_1881 SSA_1881 SSA_1881 1875293 1876054 - hypothetical protein GC: 39.5%25%3B Codon Adaptation Index (CAI): 0.747. gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1881 SSA_1882 SSA_1882 prtS prtS 1876367 1880887 - subtilisin-like serine proteases GC: 47.93%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1882 SSA_1883 SSA_1883 SSA_1883 1881664 1882392 - hypothetical protein GC: 28.26%25%3B Codon Adaptation Index (CAI): 0.767. gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1883 SSA_1884 SSA_1884 SSA_1884 1882395 1883054 - hypothetical protein GC: 30.45%25%3B Codon Adaptation Index (CAI): 0.749. Curator(s): J. Alves gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1884 SSA_1885 SSA_1885 SSA_1885 1883106 1885190 - Conserved hypothetical protein. GC: 28.06%25. Codon Adaptation Index (CAI): 0.757. GO:0016787 (Function: hydrolase activity)%2C GO:0005524 (Function: ATP binding). gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1885 SSA_1888 SSA_1888 SSA_1888 1885180 1886115 - hypothetical protein GC: 26.39%25%3B Codon Adaptation Index (CAI): 0.786. gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1888 SSA_1889 SSA_1889 SSA_1889 1886373 1887212 - hypothetical protein GC: 47.26%25%3B Codon Adaptation Index (CAI): 0.753. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1889 SSA_1890 SSA_1890 SSA_1890 1887783 1888235 - acetyltransferase GC: 44.15%25%3B Codon Adaptation Index (CAI): 0.753. gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1890 SSA_1891 SSA_1891 SSA_1891 1888236 1889081 - aldo/keto reductase GC: 51.89%25%3B Codon Adaptation Index (CAI): 0.754. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1891 SSA_1892 SSA_1892 SSA_1892 1889158 1889352 - hypothetical protein GC: 37.44%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.721. SignalP prediction: Yes (prob. 0.999). gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1892 SSA_1893 SSA_1893 nagA nagA 1889511 1890662 - N-acetylglucosamine-6-phosphate deacetylase GC: 48.7%25%3B Codon Adaptation Index (CAI): 0.786. gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1893 SSA_1895 SSA_1895 rbfA rbfA 1890905 1891255 - ribosome-binding factor A associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1895 SSA_1896 SSA_1896 infB infB 1891432 1894224 - translation initiation factor IF-2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1896 SSA_1897 SSA_1897 SSA_1897 1894244 1894540 - hypothetical protein GC: 44.78%25%3B Codon Adaptation Index (CAI): 0.804. Curator(s): J. Alves gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1897 SSA_1899 SSA_1899 SSA_1899 1894533 1894829 - hypothetical protein GC: 44.44%25%3B Codon Adaptation Index (CAI): 0.768. gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1899 SSA_1900 SSA_1900 nusA nusA 1894840 1896102 - transcription elongation factor NusA modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1900 SSA_1901 SSA_1901 SSA_1901 1896156 1896689 - hypothetical protein in Streptococcus pneumoniae this gene was found to be essential%3B structure determination of the Streptococcus protein shows that it is similar to a number of other proteins gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1901 SSA_1902 SSA_1902 trmB trmB 1896843 1897481 - tRNA (guanine-N(7)-)-methyltransferase tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1902 SSA_1903 SSA_1903 SSA_1903 1897478 1898272 - hypothetical protein GC: 47.55%25%3B Codon Adaptation Index (CAI): 0.759. gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1903 SSA_1904 SSA_1904 SSA_1904 1898323 1899369 - multidrug ABC transporter permease GC: 44.32%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.767. Curator(s): J. Alves gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1904 SSA_1905 SSA_1905 SSA_1905 1899366 1900163 - multidrug ABC transporter ATPase GC: 44.99%25%3B Transporter classification TC:3.A.1.126.1. Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1905 SSA_1906 SSA_1906 hit hit 1900166 1900576 + diadenosine tetraphosphate (Ap4A) hydrolase GC: 44.77%25%3B Codon Adaptation Index (CAI): 0.802. Curator(s): J. Alves gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1906 SSA_1907 SSA_1907 SSA_1907 1900586 1900873 + hypothetical protein GC: 37.15%25%3B Codon Adaptation Index (CAI): 0.755. gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1907 SSA_1909 SSA_1909 SSA_1909 1900994 1902232 - LytR family transcriptional regulator GC: 44.71%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.813. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.997). Capsular polysaccharide biosynthesis transcriptional attenuator. Curator(s): J. Alves gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1909 SSA_1910 SSA_1910 SSA_1910 1902241 1902762 - hypothetical protein GC: 41.38%25%3B Codon Adaptation Index (CAI): 0.788. gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1910 SSA_1911 SSA_1911 SSA_1911 1902755 1903195 - hypothetical protein GC: 46.71%25%3B Codon Adaptation Index (CAI): 0.777. gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1911 SSA_1912 SSA_1912 SSA_1912 1903203 1903310 - hypothetical protein GC: 27.78%25%3B Codon Adaptation Index (CAI): 0.746. gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1912 SSA_1913 SSA_1913 SSA_1913 1903335 1904756 - xanthine/uracil permease family protein GC: 46.13%25%3B Transporter classification TC:2.A.1.40.1. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.773. Curator(s): J. Alves gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1913 SSA_1914 SSA_1914 SSA_1914 1904902 1905285 - hypothetical protein GC: 38.8%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.82. gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1914 SSA_1915 SSA_1915 SSA_1915 1905366 1905530 - hypothetical protein GC: 41.21%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.799. gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1915 SSA_1916 SSA_1916 SSA_1916 1905627 1906439 + hypothetical protein GC: 44.03%25%3B Codon Adaptation Index (CAI): 0.777. gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1916 SSA_1917 SSA_1917 adh adh 1906657 1907676 + alcohol dehydrogenase similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1917 SSA_1918 SSA_1918 SSA_1918 1908129 1909133 + phosphotransferase system%2C mannose-specific EIIAB GC: 45.97%25%3B Transporter classification TC:4.A.6.1.1. Codon Adaptation Index (CAI): 0.799. gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1918 SSA_1919 SSA_1919 SSA_1919 1909178 1909984 + phosphotransferase system%2C mannose-specific EIIC GC: 47.58%25%3B Transporter classification TC:4.A.6.1.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.799. SignalP prediction: Yes (prob. 0.707). gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1919 SSA_1920 SSA_1920 SSA_1920 1910003 1910944 + phosphotransferase system%2C mannose-specific EIID GC: 42.36%25%3B Transporter classification TC:4.A.6.1.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.798. gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1920 SSA_1921 SSA_1921 SSA_1921 1911015 1911377 + hypothetical protein GC: 40.5%25%3B Codon Adaptation Index (CAI): 0.814. Curator(s): J. Alves gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1921 SSA_1922 SSA_1922 SSA_1922 1911564 1912196 - hypothetical protein GC: 41.39%25%3B Codon Adaptation Index (CAI): 0.795. gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1922 SSA_1923 SSA_1923 SSA_1923 1912210 1912788 - NADPH-quinone reductase GC: 40.59%25%3B Codon Adaptation Index (CAI): 0.817. gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1923 SSA_1924 SSA_1924 SSA_1924 1912781 1913338 - TetR/AcrR family transcriptional regulator GC: 42.29%25%3B Codon Adaptation Index (CAI): 0.777. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1924 SSA_1925 SSA_1925 serS serS 1913648 1914925 + seryl-tRNA synthetase catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1925 SSA_1926 SSA_1926 SSA_1926 1914969 1915094 + hypothetical protein GC: 31.75%25%3B Codon Adaptation Index (CAI): 0.825. gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1926 SSA_1927 SSA_1927 shetA shetA 1915046 1915963 - exfoliative toxin GC: 45.21%25%3B Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.731. gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1927 SSA_1928 SSA_1928 SSA_1928 1916036 1917100 - acyl-CoA dehydrogenase GC: 47.89%25%3B Codon Adaptation Index (CAI): 0.765. Curator(s): J. Alves gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1928 SSA_1929 SSA_1929 mip mip 1917119 1917679 - macrophage infectivity potentiator protein GC: 45.81%25%3B Codon Adaptation Index (CAI): 0.792. gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1929 SSA_1930 SSA_1930 accA accA 1917867 1918637 - acetyl-CoA carboxylase subunit alpha catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein%3B these proteins present a shorter N-terminus gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1930 SSA_1931 SSA_1931 accD accD 1918634 1919497 - acetyl-CoA carboxylase subunit beta catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1931 SSA_1932 SSA_1932 accC accC 1919597 1920964 - acetyl-CoA carboxylase biotin carboxylase subunit an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1932 SSA_1933 SSA_1933 fabZ fabZ 1920983 1921405 - (3R)-hydroxymyristoyl-ACP dehydratase in Pseudomonas aeruginosa this enzyme is a trimer of dimers%3B essential for membrane formation%3B performs third step of type II fatty acid biosynthesis%3B catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1933 SSA_1934 SSA_1934 accB accB 1921402 1921890 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1934 SSA_1935 SSA_1935 fabF fabF 1921897 1923129 - 3-oxoacyl-ACP synthase FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1935 SSA_1936 SSA_1936 fabG fabG 1923194 1923928 - 3-ketoacyl-ACP reductase catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1936 SSA_1937 SSA_1937 fabD fabD 1923941 1924861 - malonyl-CoA:ACP transacylase GC: 44.95%25%3B Codon Adaptation Index (CAI): 0.784. gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1937 SSA_1938 SSA_1938 fabK fabK 1924854 1925828 - enoyl-acyl carrier protein(ACP) reductase GC: 46.77%25%3B Codon Adaptation Index (CAI): 0.801. gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1938 SSA_1939 SSA_1939 acpP acpP 1925965 1926189 - acyl carrier protein carries the fatty acid chain in fatty acid biosynthesis gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1939 SSA_1940 SSA_1940 fabH fabH 1926245 1927219 - 3-oxoacyl-ACP synthase FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1940 SSA_1941 SSA_1941 SSA_1941 1927219 1927542 - hypothetical protein GC: 44.75%25%3B Codon Adaptation Index (CAI): 0.736. gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1941 SSA_1942 SSA_1942 phaB phaB 1927795 1928586 - enoyl-CoA hydratase Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1942 SSA_1943 SSA_1943 lysC lysC 1928837 1930219 + aspartate kinase catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B lysine and threonine sensitive gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1943 SSA_1944 SSA_1944 SSA_1944 1935775 1936701 - oligopeptide transport ATP-binding protein GC: 40.78%25%3B Transporter classification TC:3.A.1.5.1. Codon Adaptation Index (CAI): 0.796. gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1944 SSA_1945 SSA_1945 SSA_1945 1936712 1937779 - oligopeptide transport ATP-binding protein GC: 43.45%25%3B Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.79. gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1945 SSA_1946 SSA_1946 SSA_1946 1937788 1938714 - oligopeptide transport system permease GC: 40.99%25%3B Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.796. gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1946 SSA_1947 SSA_1947 SSA_1947 1938714 1940210 - oligopeptide transport system permease GC: 41.42%25%3B Transporter classification TC:3.A.1.5.2. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.816. SignalP prediction: Yes (prob. 0.769). gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1947 SSA_1948 SSA_1948 SSA_1948 1940275 1942260 - oligopeptide-binding lipoprotein GC: 41.44%25%3B Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.799. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1948 SSA_1949 SSA_1949 SSA_1949 1942493 1944463 - AliA protein GC: 42.87%25%3B Transporter classification TC:3.A.1.5.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.805. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1949 SSA_1950 SSA_1950 SSA_1950 1944656 1946617 - peptide ABC transporter periplasmic protein GC: 41.23%25%3B Transporter classification TC:3.A.1.5.2. Codon Adaptation Index (CAI): 0.801. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1950 SSA_1951 SSA_1951 pbp3 pbp3 1946904 1948163 + penicillin-binding protein 3 GC: 45.63%25%3B Codon Adaptation Index (CAI): 0.763. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Helix-turn-helix prediction: AraC. gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1951 SSA_1952 SSA_1952 SSA_1952 1948302 1949714 - ABC transporter permease GC: 45.72%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): J. Alves gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1952 SSA_1953 SSA_1953 nifU nifU 1949732 1950169 - NifU family protein GC: 48.63%25%3B Codon Adaptation Index (CAI): 0.757. gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1953 SSA_1954 SSA_1954 SSA_1954 1950156 1951388 - class V aminotransferase GC: 49.8%25%3B Codon Adaptation Index (CAI): 0.765. gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1954 SSA_1955 SSA_1955 SSA_1955 1951430 1952692 - ABC transporter permease GC: 46.56%25%3B Codon Adaptation Index (CAI): 0.808. Curator(s): J. Alves gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1955 SSA_1956 SSA_1956 SSA_1956 1952734 1953504 - ABC transporter ATPase GC: 45.4%25%3B Codon Adaptation Index (CAI): 0.818. Curator(s): J. Alves gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1956 SSA_1957 SSA_1957 rgpG rgpG 1953594 1954760 - glycosyl transferase N-acetylglucosaminyltransferase GC: 45.42%25%3B Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.958). gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1957 SSA_1958 SSA_1958 mecA mecA 1954751 1955503 - adaptor protein enables recognition and targeting of proteins for proteolysis%2C involved in negative regulation of competence gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1958 SSA_1959 SSA_1959 bacA bacA 1955679 1956521 - undecaprenyl pyrophosphate phosphatase BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1959 SSA_1960 SSA_1960 SSA_1960 1956661 1958556 - hypothetical protein GC: 46.26%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999)%3B Helix-turn-helix prediction: AraC. gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1960 SSA_1961 SSA_1961 SSA_1961 1958688 1960253 + amino acid ABC transporter substrate-binding protein GC: 45.4%25%3B Transporter classification TC:3.A.1.3.12. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.777. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1961 SSA_1962 SSA_1962 SSA_1962 1960250 1960990 + amino acid ABC transporter ATP-binding protein GC: 47.64%25%3B Transporter classification TC:3.A.1.3.13. Codon Adaptation Index (CAI): 0.79. gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1962 SSA_1964 SSA_1964 SSA_1964 1961086 1961301 - hypothetical protein GC: 35.19%25%3B Codon Adaptation Index (CAI): 0.839. Curator(s): J. Alves gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1964 SSA_1965 SSA_1965 SSA_1965 1961410 1962342 - stomatin/prohibitin-like membrane protease subunits GC: 42.55%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.768. gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1965 SSA_1967 SSA_1967 ilvA ilvA 1962399 1963649 - threonine dehydratase catalyzes the formation of 2-oxobutanoate from L-threonine%3B biosynthetic gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1967 SSA_1968 SSA_1968 ilvC ilvC 1963749 1964771 - ketol-acid reductoisomerase catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1968 SSA_1969 SSA_1969 ilvH ilvH 1964836 1965312 - acetolactate synthase 3 regulatory subunit with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1969 SSA_1970 SSA_1970 ilvB ilvB 1965305 1967005 - acetolactate synthase catalytic subunit catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1970 SSA_1971 SSA_1971 SSA_1971 1967307 1967657 + hypothetical protein GC: 36.18%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.75. gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1971 SSA_1972 SSA_1972 SSA_1972 1967901 1968500 - two-component response transcriptional regulator GC: 47.67%25%3B Codon Adaptation Index (CAI): 0.738. Curator(s): J. Alves gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1972 SSA_1973 SSA_1973 SSA_1973 1968497 1969597 - histidine kinase GC: 42.78%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.764. gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1973 SSA_1974 SSA_1974 SSA_1974 1969602 1970336 - multidrug ABC transporter permease GC: 41.63%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.795. Curator(s): J. Alves gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1974 SSA_1975 SSA_1975 SSA_1975 1970347 1971222 - multidrug ABC transporter ATPase GC: 43.26%25%3B Transporter classification TC:3.A.1.102.1. Codon Adaptation Index (CAI): 0.788. Curator(s): J. Alves gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1975 SSA_1976 SSA_1976 SSA_1976 1971640 1972248 - hypothetical protein GC: 40.72%25%3B Codon Adaptation Index (CAI): 0.815. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): J. Alves gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1976 SSA_1978 SSA_1978 SSA_1978 1972359 1974023 - dihydroxyacetone kinase family protein GC: 46.31%25%3B Codon Adaptation Index (CAI): 0.802. Curator(s): J. Alves gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1978 SSA_1979 SSA_1979 asp asp 1974026 1974391 - alkaline-shock protein GC: 39.34%25%3B Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1979 SSA_1980 SSA_1980 rpmB rpmB 1974534 1974722 - 50S ribosomal protein L28 required for 70S ribosome assembly gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1980 SSA_1981 SSA_1981 SSA_1981 1974849 1975511 - hypothetical protein GC: 41.63%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.702). gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1981 SSA_1982 SSA_1982 SSA_1982 1975517 1975963 - LytR/AlgR family transcriptional regulator GC: 41.39%25%3B Codon Adaptation Index (CAI): 0.745. Curator(s): J. Alves gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1982 SSA_1984 SSA_1984 SSA_1984 1976138 1979125 - cell surface SD repeat-containing protein GC: 44.95%25%3B Codon Adaptation Index (CAI): 0.758. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1984 SSA_1985 SSA_1985 SSA_1985 1979713 1981863 - hypothetical protein GC: 43.24%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.751. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1985 SSA_1986 SSA_1986 SSA_1986 1982163 1982621 - acetyltransferase GC: 38.13%25%3B Codon Adaptation Index (CAI): 0.777. gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1986 SSA_1987 SSA_1987 SSA_1987 1982673 1983458 - hypothetical protein GC: 40.08%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.753. gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1987 SSA_1988 SSA_1988 SSA_1988 1983460 1984278 - ABC transporter permease GC: 40.66%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.76. Curator(s): J. Alves gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1988 SSA_1989 SSA_1989 SSA_1989 1984280 1985272 - ABC transporter ATPase GC: 44.51%25%3B Transporter classification TC:3.A.1.23.2. Codon Adaptation Index (CAI): 0.785. Curator(s): J. Alves gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1989 SSA_1990 SSA_1990 SSA_1990 1985492 1986409 - Zn-porter lipoprotein GC: 39.32%25%3B Transporter classification TC:3.A.1.15.3. Codon Adaptation Index (CAI): 0.778. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.999)%3B Curator(s): J. Alves gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1990 SSA_1991 SSA_1991 phtA phtA 1986430 1988862 - histidine triad protein A GC: 39.29%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.789. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.453). gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1991 SSA_1992 SSA_1992 fba fba 1989181 1990062 - fructose-bisphosphate aldolase catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1992 SSA_1993 SSA_1993 SSA_1993 1990470 1990880 - hypothetical protein GC: 43.55%25%3B Codon Adaptation Index (CAI): 0.758. Curator(s): J. Alves gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1993 SSA_1994 SSA_1994 pyrG pyrG 1990951 1992564 - CTP synthetase CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1994 SSA_1995 SSA_1995 SSA_1995 1992762 1993448 - hypothetical protein GC: 43.81%25%3B Codon Adaptation Index (CAI): 0.779. gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1995 SSA_1996 SSA_1996 rpoE rpoE 1993569 1994114 - DNA-directed RNA polymerase subunit delta participates in both the initiation and recycling phases of transcription%3B in the presence of the delta subunit%2C RNAP displays an increased specificity of transcription%2C a decreased affinity for nucleic acids%2C and an increased efficiency of RNA synthesis because of enhanced recycling gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1996 SSA_1997 SSA_1997 SSA_1997 1994252 1995001 - membrane spanning protein GC: 37.87%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.756. SignalP prediction: Yes (prob. 0.705). gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1997 SSA_1998 SSA_1998 tig tig 1995138 1996421 - trigger factor Tig%3B RopA%3B peptidyl-prolyl cis/trans isomerase%3B promotes folding of newly synthesized proteins%3B binds ribosomal 50S subunit%3B forms a homodimer gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1998 SSA_1999 SSA_1999 SSA_1999 1996501 1997064 - hypothetical protein GC: 48.4%25%3B Codon Adaptation Index (CAI): 0.774. gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_1999 SSA_2000 SSA_2000 SSA_2000 1997077 1997559 - hypothetical protein GC: 44.72%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.758. SignalP prediction: Yes (prob. 0.865). gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2000 SSA_2001 SSA_2001 thiD thiD 1997540 1998310 - phosphomethylpyrimidine kinase catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2001 SSA_2002 SSA_2002 truA truA 1998300 1999049 - tRNA pseudouridine synthase A mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2002 SSA_2004 SSA_2004 zmpB zmpB 1999306 2005020 - Zinc metalloprotease zmpB GC: 46.16%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.781. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2004 SSA_2005 SSA_2005 dnaJ dnaJ 2005341 2006474 - molecular chaperone DnaJ chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2005 SSA_2006 SSA_2006 SSA_2006 2006673 2007305 - 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein GC: 36.49%25%3B Codon Adaptation Index (CAI): 0.757. gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2006 SSA_2007 SSA_2007 dnaK dnaK 2007533 2009362 - molecular chaperone DnaK heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2007 SSA_2008 SSA_2008 grpE grpE 2009616 2010152 - heat shock protein GrpE with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2008 SSA_2009 SSA_2009 hrcA hrcA 2010188 2011222 - heat-inducible transcription repressor Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2009 SSA_2010 SSA_2010 SSA_2010 2011386 2012114 - multidrug ABC transporter permease GC: 37.86%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.8. Curator(s): J. Alves gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2010 SSA_2011 SSA_2011 SSA_2011 2012107 2012946 - multidrug ABC transporter ATPase GC: 42.86%25%3B Transporter classification TC:3.A.1.124.1. Codon Adaptation Index (CAI): 0.811. Curator(s): J. Alves gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2011 SSA_2012 SSA_2012 SSA_2012 2012988 2013560 - hypothetical protein GC: 39.79%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.781. Curator(s): T. Kitten %2C J. Alves gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2012 SSA_2013 SSA_2013 SSA_2013 2013560 2013883 - hypothetical protein GC: 41.98%25%3B Codon Adaptation Index (CAI): 0.779. gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2013 SSA_2014 SSA_2014 SSA_2014 2014109 2014897 - D-alanyl-D-alanine carboxypeptidase GC: 47.28%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2014 SSA_2015 SSA_2015 SSA_2015 2014884 2015582 - phosphoglycerate mutase GC: 49.36%25%3B Codon Adaptation Index (CAI): 0.799. Curator(s): J. Alves gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2015 SSA_2016 SSA_2016 SSA_2016 2015682 2016383 - phosphoglycerate mutase GC: 50.28%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2016 SSA_2017 SSA_2017 SSA_2017 2016525 2017421 - hypothetical protein GC: 43.14%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.756. Curator(s): J. Alves gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2017 SSA_2018 SSA_2018 SSA_2018 2017554 2018891 - hypothetical protein GC: 49.93%25%3B Codon Adaptation Index (CAI): 0.763. gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2018 SSA_2019 SSA_2019 SSA_2019 2018902 2019168 - hypothetical protein ACT domain-containing protein gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2019 SSA_2020 SSA_2020 SSA_2020 2019424 2022531 + hypothetical protein GC: 49.45%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.78. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2020 SSA_2021 SSA_2021 SSA_2021 2022590 2023624 - hypothetical protein GC: 44.93%25%3B Codon Adaptation Index (CAI): 0.806. gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2021 SSA_2022 SSA_2022 SSA_2022 2023712 2024548 + MerR family transcriptional regulator GC: 40.14%25%3B Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2022 SSA_2023 SSA_2023 SSA_2023 2024699 2028916 - fructan beta-fructosidase GC: 46.44%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.779. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999). gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2023 SSA_2024 SSA_2024 SSA_2024 2029195 2029362 - hypothetical protein GC: 45.24%25%3B Codon Adaptation Index (CAI): 0.735. gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2024 SSA_2025 SSA_2025 SSA_2025 2029936 2031072 + GTPase protein GC: 37.2%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.766. Curator(s): J. Alves gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2025 SSA_2026 SSA_2026 cadD1 cadD1 2032285 2032911 - cadmium resistance transporter GC: 33.97%25%3B Transporter classification TC:2.A.77.1.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.744. Curator(s): J. Alves gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2026 SSA_2027 SSA_2027 copA copA 2033199 2035262 - P-type ATPase-metal/cation transport GC: 37.4%25%3B Transporter classification TC:3.A.3.5.1. Codon Adaptation Index (CAI): 0.768. gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2027 SSA_2028 SSA_2028 SSA_2028 2035264 2035542 - hypothetical protein GC: 36.92%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.781. SignalP prediction: Yes (prob. 0.871)%3B Curator(s): J. Alves gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2028 SSA_2029 SSA_2029 SSA_2029 2035723 2036118 - transposase GC: 36.36%25%3B Codon Adaptation Index (CAI): 0.767. gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2029 SSA_2030 SSA_2030 SSA_2030 2036604 2036840 - hypothetical protein GC: 32.49%25%3B Codon Adaptation Index (CAI): 0.765. gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2030 SSA_2031 SSA_2031 SSA_2031 2037293 2037901 + hypothetical protein GC: 46.63%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.785. Curator(s): T. Kitten %2C J. Alves gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2031 SSA_2032 SSA_2032 SSA_2032 2038146 2038367 + phage integrase family integrase/recombinase GC: 36.49%25%3B Codon Adaptation Index (CAI): 0.781. Helix-turn-helix prediction: AraC. gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2032 SSA_2033 SSA_2033 rpsI rpsI 2038477 2038869 - 30S ribosomal protein S9 forms a direct contact with the tRNA during translation gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2033 SSA_2034 SSA_2034 rplM rplM 2038888 2039334 - 50S ribosomal protein L13 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2034 SSA_2035 SSA_2035 SSA_2035 2039515 2040378 - hypothetical protein GC: 49.88%25%3B Codon Adaptation Index (CAI): 0.786. gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2035 SSA_2036 SSA_2036 SSA_2036 2040368 2040889 - hypothetical protein GC: 46.55%25%3B Codon Adaptation Index (CAI): 0.74. gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2036 SSA_2037 SSA_2037 trmH trmH 2040886 2041614 - tRNA (guanosine-2'-O-)-methyltransferase GC: 48.97%25%3B Codon Adaptation Index (CAI): 0.766. gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2037 SSA_2038 SSA_2038 SSA_2038 2041767 2042729 + hypothetical protein GC: 49.43%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.738. SignalP prediction: Yes (prob. 0.843). gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2038 SSA_2039 SSA_2039 SSA_2039 2042797 2044545 - aminoacid specific permease GC: 40.59%25%3B Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.77. gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2039 SSA_2040 SSA_2040 SSA_2040 2044658 2045788 - sugar ABC transporter ATP-binding protein GC: 40.94%25%3B Transporter classification TC:3.A.1.1.2. Codon Adaptation Index (CAI): 0.794. gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2040 SSA_2041 SSA_2041 lrp lrp 2045897 2046772 - hypothetical protein GC: 44.52%25%3B Codon Adaptation Index (CAI): 0.762. Helix-turn-helix prediction: AraC. gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2041 SSA_2042 SSA_2042 SSA_2042 2046759 2047163 - hypothetical protein GC: 49.88%25%3B Codon Adaptation Index (CAI): 0.783. gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2042 SSA_2044 SSA_2044 cysS cysS 2047156 2048499 - cysteinyl-tRNA synthetase catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2044 SSA_2045 SSA_2045 SSA_2045 2048517 2049038 - reductase GC: 46.17%25%3B Codon Adaptation Index (CAI): 0.722. gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2045 SSA_2046 SSA_2046 SSA_2046 2049047 2049811 - uridine phosphorylase GC: 47.06%25%3B Codon Adaptation Index (CAI): 0.772. gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2046 SSA_2047 SSA_2047 SSA_2047 2049825 2050043 - hypothetical protein GC: 49.32%25%3B Codon Adaptation Index (CAI): 0.805. gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2047 SSA_2048 SSA_2048 cysE cysE 2050074 2050691 - serine acetyltransferase GC: 53.72%25%3B Codon Adaptation Index (CAI): 0.747. gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2048 SSA_2049 SSA_2049 pnpA pnpA 2050783 2052984 - polynucleotide phosphorylase GC: 47.32%25%3B Codon Adaptation Index (CAI): 0.806. gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2049 SSA_2050 SSA_2050 SSA_2050 2053395 2054756 + arabinose efflux permease GC: 42.73%25%3B Transporter classification TC:2.A.1.3.4. Transmembrane domains: 14. Codon Adaptation Index (CAI): 0.73. Curator(s): J. Alves gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2050 SSA_2051 SSA_2051 SSA_2051 2054871 2056667 + oligoendopeptidase GC: 48.08%25%3B Codon Adaptation Index (CAI): 0.772. gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2051 SSA_2052 SSA_2052 SSA_2052 2057283 2057597 - thioredoxin GC: 47.62%25%3B Codon Adaptation Index (CAI): 0.792. gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2052 SSA_2053 SSA_2053 SSA_2053 2057616 2057837 - hypothetical protein GC: 40.09%25%3B Codon Adaptation Index (CAI): 0.86. gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2053 SSA_2054 SSA_2054 SSA_2054 2057882 2057989 - hypothetical protein GC: 36.11%25%3B Codon Adaptation Index (CAI): 0.803. gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2054 SSA_2055 SSA_2055 SSA_2055 2058026 2058250 - hypothetical protein GC: 44.89%25%3B Codon Adaptation Index (CAI): 0.816. gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2055 SSA_2056 SSA_2056 SSA_2056 2058727 2059653 + cinnamoyl ester hydrolase GC: 47.46%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.763. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.937). gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2056 SSA_2058 SSA_2058 rpsO rpsO 2060148 2060444 - 30S ribosomal protein S15 primary rRNA binding protein%3B helps nucleate assembly of 30S%3B binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA%3B autoregulates translation through interactions with the mRNA leader sequence gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2058 SSA_2059 SSA_2059 SSA_2059 2060584 2061312 - 16S rRNA uridine-516 pseudouridylate synthase GC: 48.01%25%3B Codon Adaptation Index (CAI): 0.761. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2059 SSA_2060 SSA_2060 SSA_2060 2061324 2062493 - arabinose efflux permease GC: 46.24%25%3B Transporter classification TC:2.A.1.15.4. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.759. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2060 SSA_2061 SSA_2061 def def 2062687 2063319 + peptide deformylase cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins%3B binds iron(2+) gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2061 SSA_2062 SSA_2062 SSA_2062 2063381 2063611 - hypothetical protein GC: 46.32%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.793. gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2062 SSA_2063 SSA_2063 pepS pepS 2063706 2064947 - aminopeptidase GC: 49.28%25%3B Codon Adaptation Index (CAI): 0.766. gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2063 SSA_2064 SSA_2064 SSA_2064 2064969 2065121 - hypothetical protein GC: 39.87%25%3B Codon Adaptation Index (CAI): 0.761. gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2064 SSA_2065 SSA_2065 SSA_2065 2065141 2065833 - hypothetical protein GC: 36.94%25%3B Codon Adaptation Index (CAI): 0.802. gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2065 SSA_2066 SSA_2066 polC polC 2065839 2070227 - DNA polymerase III PolC catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B required for leading strand synthesis%3B PolC exhibits 3' to 5' exonuclease activity gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2066 SSA_2067 SSA_2067 SSA_2067 2070394 2070936 + hypothetical protein GC: 34.25%25%3B Codon Adaptation Index (CAI): 0.798. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.9). gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2067 SSA_2068 SSA_2068 SSA_2068 2071021 2071401 - superfamily I DNA/RNA helicase GC: 44.88%25%3B Codon Adaptation Index (CAI): 0.783. gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2068 SSA_2069 SSA_2069 proS proS 2071492 2073342 - prolyl-tRNA synthetase catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2069 SSA_2070 SSA_2070 eep eep 2073408 2074664 - Zinc metalloprotease GC: 47.33%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.763. gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2070 SSA_2071 SSA_2071 SSA_2071 2074686 2074856 - hypothetical protein GC: 42.69%25%3B Codon Adaptation Index (CAI): 0.713. gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2071 SSA_2072 SSA_2072 cdsA cdsA 2074890 2075693 - phosphatidate cytidylyltransferase GC: 46.77%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.785. SignalP prediction: Yes (prob. 0.672). gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2072 SSA_2073 SSA_2073 uppS uppS 2075712 2076461 - undecaprenyl pyrophosphate synthase catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2073 SSA_2074 SSA_2074 yajC yajC 2076690 2077025 - preprotein translocase subunit YajC member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2074 SSA_2075 SSA_2075 tkt tkt 2077203 2079179 - transketolase catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2075 SSA_2076 SSA_2076 SSA_2076 2079480 2080571 - L-ascorbate 6-phosphate lactonase GC: 45.7%25%3B Codon Adaptation Index (CAI): 0.808. gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2076 SSA_2077 SSA_2077 SSA_2077 2081442 2082182 - hypothetical protein GC: 35.09%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.776. gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2077 SSA_2078 SSA_2078 SSA_2078 2082266 2083927 - hypothetical protein GC: 47.53%25%3B Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2078 SSA_2079 SSA_2079 SSA_2079 2084111 2084659 + acetyltransferase GC: 49.18%25%3B Codon Adaptation Index (CAI): 0.79. gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2079 SSA_2080 SSA_2080 SSA_2080 2084688 2085431 - hypothetical protein GC: 44.62%25%3B Codon Adaptation Index (CAI): 0.73. gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2080 SSA_2081 SSA_2081 SSA_2081 2085449 2085550 + hypothetical protein GC: 48.04%25%3B Codon Adaptation Index (CAI): 0.789. gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2081 SSA_2082 SSA_2082 SSA_2082 2085441 2086964 - carbohydrate kinase GC: 48.29%25%3B Codon Adaptation Index (CAI): 0.75. gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2082 SSA_2083 SSA_2083 SSA_2083 2087040 2088059 - hypothetical protein GC: 46.18%25%3B Codon Adaptation Index (CAI): 0.789. gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2083 SSA_2084 SSA_2084 SSA_2084 2088063 2089514 - PTS system galactitol-specific transporter subunit IIC GC: 45.73%25%3B Transporter classification TC:4.A.5.1.1. Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.55)%3B Curator(s): J. Alves gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2084 SSA_2085 SSA_2085 SSA_2085 2089538 2090494 - glyoxylate reductase%2C NADH-dependent GC: 47.75%25%3B Codon Adaptation Index (CAI): 0.732. gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2085 SSA_2086 SSA_2086 SSA_2086 2090487 2091518 - hypothetical protein GC: 46.61%25%3B Codon Adaptation Index (CAI): 0.766. gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2086 SSA_2087 SSA_2087 SSA_2087 2091764 2092747 - hypothetical protein GC: 44.11%25%3B Codon Adaptation Index (CAI): 0.734. Helix-turn-helix prediction: AraC. gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2087 SSA_2088 SSA_2088 araD araD 2092856 2093566 - L-ribulose-5-phosphate 4-epimerase catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate in the L-arabinose and L-ascorbate degradation pathways gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2088 SSA_2089 SSA_2089 sga sga 2093566 2094429 - L-xylulose 5-phosphate 3-epimerase L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated%3B may be involved in the utilization of 2%2C3-diketo-L-gulonate gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2089 SSA_2090 SSA_2090 ulaD ulaD 2094433 2095098 - 3-keto-L-gulonate-6-phosphate decarboxylase catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2090 SSA_2091 SSA_2091 ptxA ptxA 2095152 2095652 - phosphotransferase system sugar-specific EII component GC: 47.5%25%3B Transporter classification TC:4.A.7.1.1. Codon Adaptation Index (CAI): 0.771. gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2091 SSA_2092 SSA_2092 ptxB ptxB 2095787 2096065 - phosphotransferase system sugar-specific EII component GC: 37.63%25%3B Transporter classification TC:4.A.7.1.1. Codon Adaptation Index (CAI): 0.815. gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2092 SSA_2093 SSA_2093 sgaT sgaT 2096095 2097552 - PTS system ascorbate-specific transporter subunit IIC membrane component%3B functions with enzymes IIB (sgaB%3B ulaB) and IIA (sgaA%3B ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate%3B sgaTBA are regulated by yifQ as well as Crp and Fnr gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2093 SSA_2094 SSA_2094 SSA_2094 2098080 2098337 - hypothetical protein GC: 37.6%25%3B Codon Adaptation Index (CAI): 0.771. gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2094 SSA_2095 SSA_2095 SSA_2095 2098535 2099284 - CAAX amino terminal protease family (pseudogene). GC: 37.47%25. Codon Adaptation Index (CAI): 0.748. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.522). Curator(s): T. Kitten %2C J. Alves. gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2095 SSA_2096 SSA_2096 clpL clpL 2099647 2101785 - ATP-dependent protease%2C ATP-binding subunit GC: 47.36%25%3B Codon Adaptation Index (CAI): 0.799. gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2096 SSA_2097 SSA_2097 SSA_2097 2102244 2103008 - amino acid ABC transporter ATP-binding protein GC: 46.54%25%3B Transporter classification TC:3.A.1.3.13. Codon Adaptation Index (CAI): 0.781. gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2097 SSA_2098 SSA_2098 SSA_2098 2103021 2103707 - arginine/histidine ABC transporter permease GC: 42.5%25%3B Transporter classification TC:3.A.1.3.13. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.765. Curator(s): J. Alves gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2098 SSA_2099 SSA_2099 SSA_2099 2103711 2104403 - arginine/histidine ABC transporter permease GC: 48.34%25%3B Transporter classification TC:3.A.1.3.13. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.776. Curator(s): J. Alves gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2099 SSA_2101 SSA_2101 SSA_2101 2104599 2105483 - amino acid ABC transporter substrate-binding protein GC: 44.29%25%3B Transporter classification TC:3.A.1.3.13. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.811. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998). gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2101 SSA_2102 SSA_2102 SSA_2102 2105499 2106500 - hypothetical protein GC: 49.1%25%3B Codon Adaptation Index (CAI): 0.767. gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2102 SSA_2103 SSA_2103 SSA_2103 2106590 2106790 - hypothetical protein GC: 41.79%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.727. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.815). gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2103 SSA_2105 SSA_2105 SSA_2105 2106846 2107892 - hypothetical protein GC: 47.37%25%3B Codon Adaptation Index (CAI): 0.765. gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2105 SSA_2106 SSA_2106 SSA_2106 2108105 2109154 - flavin monoxygenase GC: 53.43%25%3B Codon Adaptation Index (CAI): 0.755. Curator(s): J. Alves gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2106 SSA_2107 SSA_2107 glmS glmS 2109385 2111196 - glucosamine--fructose-6-phosphate aminotransferase Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2107 SSA_2108 SSA_2108 gapA gapA 2111547 2112554 - glyceraldehyde 3-phosphate dehydrogenase GC: 42.36%25%3B Codon Adaptation Index (CAI): 0.806. gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2108 SSA_2109 SSA_2109 fusA fusA 2112877 2114958 - elongation factor G EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2109 SSA_2110 SSA_2110 rpsG rpsG 2115199 2115669 - 30S ribosomal protein S7 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2110 SSA_2111 SSA_2111 rpsL rpsL 2115689 2116102 - 30S ribosomal protein S12 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone%3B located at the interface of the 30S and 50S subunits%2C it traverses the body of the 30S subunit contacting proteins on the other side%3B mutations in the S12 gene confer streptomycin resistance gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2111 SSA_2112 SSA_2112 SSA_2112 2116089 2116181 - hypothetical protein GC: 35.48%25%3B Codon Adaptation Index (CAI): 0.763. gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2112 SSA_2113 SSA_2113 SSA_2113 2116318 2116782 - hypothetical protein GC: 45.59%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.773. SignalP prediction: Yes (prob. 0.975). gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2113 SSA_2114 SSA_2114 purR purR 2116804 2117649 - pur operon repressor GC: 41.49%25%3B Codon Adaptation Index (CAI): 0.761. Curator(s): J. Alves gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2114 SSA_2116 SSA_2116 cbf cbf 2117712 2118656 - CMP-binding-factor 1 GC: 45.82%25%3B Codon Adaptation Index (CAI): 0.787. gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2116 SSA_2117 SSA_2117 rmuC rmuC 2118646 2119902 - DNA recombination protein RmuC GC: 46.7%25%3B Codon Adaptation Index (CAI): 0.775. Curator(s): J. Alves gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2117 SSA_2118 SSA_2118 SSA_2118 2119904 2120590 - thiamine pyrophosphokinase GC: 43.09%25%3B Codon Adaptation Index (CAI): 0.788. SignalP prediction: Yes (prob. 0.452)%3B Curator(s): J. Alves gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2118 SSA_2119 SSA_2119 rpe rpe 2120529 2121188 - pentose-5-phosphate-3-epimerase GC: 46.06%25%3B Codon Adaptation Index (CAI): 0.811. gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2119 SSA_2120 SSA_2120 SSA_2120 2121200 2121841 - GTPase GC: 45.95%25%3B Codon Adaptation Index (CAI): 0.791. gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2120 SSA_2121 SSA_2121 SSA_2121 2122312 2126997 - cell wall surface anchor family protein GC: 44.17%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.82. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2121 SSA_2122 SSA_2122 SSA_2122 2127290 2127697 - hypothetical protein GC: 40.2%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.746. gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2122 SSA_2123 SSA_2123 ksgA ksgA 2127754 2128626 - dimethyladenosine transferase catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2123 SSA_2124 SSA_2124 SSA_2124 2128647 2129501 - dehydrogenase-like protein GC: 38.48%25%3B Codon Adaptation Index (CAI): 0.784. Curator(s): J. Alves gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2124 SSA_2125 SSA_2125 SSA_2125 2129513 2130109 - small primase-like protein GC: 47.74%25%3B Codon Adaptation Index (CAI): 0.759. gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2125 SSA_2126 SSA_2126 tatD tatD 2130075 2130845 - hypothetical protein GC: 48.77%25%3B Codon Adaptation Index (CAI): 0.756. gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2126 SSA_2127 SSA_2127 SSA_2127 2130842 2130940 - hypothetical protein GC: 31.31%25%3B Codon Adaptation Index (CAI): 0.777. gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2127 SSA_2128 SSA_2128 labT labT 2130941 2132182 - hypothetical protein GC: 39.69%25%3B Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.766. gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2128 SSA_2129 SSA_2129 SSA_2129 2132313 2133398 - arsenical resistance operon repressor ArsR GC: 40.15%25%3B Codon Adaptation Index (CAI): 0.744. Curator(s): J. Alves gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2129 SSA_2130 SSA_2130 SSA_2130 2133604 2134080 + hypothetical protein GC: 44.86%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.782. gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2130 SSA_2131 SSA_2131 SSA_2131 2134089 2134307 + DNA-binding protein GC: 44.75%25%3B Codon Adaptation Index (CAI): 0.737. gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2131 SSA_2132 SSA_2132 SSA_2132 2134310 2135725 + Ure cluster protein GC: 45.69%25%3B Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.726. Helix-turn-helix prediction: AraC. gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2132 SSA_2133 SSA_2133 SSA_2133 2135857 2136417 - 3-methyladenine DNA glycosylase GC: 36.9%25%3B Codon Adaptation Index (CAI): 0.762. gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2133 SSA_2134 SSA_2134 SSA_2134 2136429 2136893 - hypothetical protein GC: 32.04%25%3B Codon Adaptation Index (CAI): 0.749. gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2134 SSA_2135 SSA_2135 SSA_2135 2136917 2137534 + DeoR family transcriptional regulator GC: 33.33%25%3B Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2135 SSA_2136 SSA_2136 rpmH rpmH 2137597 2137731 - 50S ribosomal protein L34 in Escherichia coli transcription of this gene is enhanced by polyamines gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2136 SSA_2137 SSA_2137 SSA_2137 2137870 2138502 - hypothetical protein GC: 48.82%25%3B Codon Adaptation Index (CAI): 0.75. Curator(s): J. Alves%3B possible sakacin A production response transcriptional regulator sapR gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2137 SSA_2138 SSA_2138 jag jag 2138552 2139577 - RNA-binding protein GC: 45.81%25%3B Codon Adaptation Index (CAI): 0.791. Curator(s): J. Alves gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2138 SSA_2139 SSA_2139 SSA_2139 2139599 2140414 - membrane protein (preprotein translocase) oxaA 1 GC: 47.3%25%3B Transporter classification TC:2.A.9.3.2. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.764. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2139 SSA_2140 SSA_2140 rnpA rnpA 2140398 2140664 - ribonuclease P protein component GC: 38.2%25%3B Codon Adaptation Index (CAI): 0.803. Curator(s): J. Alves gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2140 SSA_2141 SSA_2141 argH argH 2140909 2142291 - argininosuccinate lyase catalyzes the formation of arginine from (N-L-arginino)succinate gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2141 SSA_2142 SSA_2142 argG argG 2142306 2143505 - argininosuccinate synthase catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis%2C AMP-forming gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2142 SSA_2143 SSA_2143 SSA_2143 2143680 2144315 - hypothetical protein GC: 44.65%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.769. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.993)%3B Curator(s): T. Kitten gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2143 SSA_2144 SSA_2144 gltX gltX 2144405 2145862 - glutamyl-tRNA synthetase Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2144 SSA_2145 SSA_2145 estA estA 2145969 2146748 - tributyrin esterase GC: 47.82%25%3B Codon Adaptation Index (CAI): 0.781. gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2145 SSA_2146 SSA_2146 SSA_2146 2146822 2148489 - metallo-beta-lactamase GC: 47.96%25%3B Codon Adaptation Index (CAI): 0.805. Curator(s): J. Alves gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2146 SSA_2147 SSA_2147 SSA_2147 2149259 2149462 - hypothetical protein GC: 33.82%25%3B Codon Adaptation Index (CAI): 0.884. Curator(s): J. Alves gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2147 SSA_2148 SSA_2148 SSA_2148 2149539 2150129 - alkaline shock stress response protein GC: 38.07%25%3B Codon Adaptation Index (CAI): 0.837. General stress protein%2C similar to alkaline shock protein. Curator(s): J. Alves gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2148 SSA_2149 SSA_2149 SSA_2149 2150330 2150911 - hypothetical protein GC: 36.94%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.757. SignalP prediction: Yes (prob. 0.721). gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2149 SSA_2150 SSA_2150 SSA_2150 2150967 2151206 - hypothetical protein GC: 40.83%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.827. gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2150 SSA_2151 SSA_2151 mga mga 2151500 2152981 + M protein trans-acting positive transcriptional regulator GC: 30.63%25%3B Codon Adaptation Index (CAI): 0.767. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2151 SSA_2152 SSA_2152 SSA_2152 2153133 2153891 - ABC transporter ATPase GC: 45.85%25%3B Transporter classification TC:3.A.1.12.4. Codon Adaptation Index (CAI): 0.736. Curator(s): J. Alves gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2152 SSA_2153 SSA_2153 SSA_2153 2153888 2154754 - ABC transporter permease GC: 49.25%25%3B Transporter classification TC:3.A.1.2.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.758. Curator(s): J. Alves gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2153 SSA_2154 SSA_2154 SSA_2154 2154852 2155349 - hypothetical protein GC: 48.59%25%3B Codon Adaptation Index (CAI): 0.749. gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2154 SSA_2155 SSA_2155 SSA_2155 2155497 2156192 - hypothetical protein GC: 46.84%25%3B Codon Adaptation Index (CAI): 0.801. gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2155 SSA_2156 SSA_2156 SSA_2156 2156306 2157022 - hypothetical protein GC: 44.35%25%3B Codon Adaptation Index (CAI): 0.76. Curator(s): J. Alves gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2156 SSA_2157 SSA_2157 radA radA 2157138 2158331 - DNA repair protein RadA Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2157 SSA_2158 SSA_2158 SSA_2158 2158511 2159143 - methyltransferase GC: 40.76%25%3B Codon Adaptation Index (CAI): 0.766. Helix-turn-helix prediction: AraC. gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2158 SSA_2159 SSA_2159 SSA_2159 2159196 2159711 - hypothetical protein GC: 47.09%25%3B Codon Adaptation Index (CAI): 0.774. gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2159 SSA_2160 SSA_2160 dut dut 2159713 2160156 - deoxyuridine 5'-triphosphate nucleotidohydrolase catalyzes the formation of dUMP from dUTP gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2160 SSA_2161 SSA_2161 SSA_2161 2160241 2160690 - NTP pyrophosphohydrolases including oxidative damage repair enzymes GC: 41.11%25%3B Codon Adaptation Index (CAI): 0.772. gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2161 SSA_2162 SSA_2162 SSA_2162 2160732 2160875 + hypothetical protein GC: 32.64%25%3B Codon Adaptation Index (CAI): 0.765. gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2162 SSA_2164 SSA_2164 SSA_2164 2160956 2161645 - glutamine amidotransferase GC: 44.64%25%3B Codon Adaptation Index (CAI): 0.794. gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2164 SSA_2165 SSA_2165 oppA oppA 2161874 2163847 + peptide ABC transporter periplasmic protein GC: 45.24%25%3B Transporter classification TC:3.A.1.5.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2165 SSA_2166 SSA_2166 SSA_2166 2163963 2165732 - multidrug ABC transporter ATPase/permease GC: 47.51%25%3B Transporter classification TC:3.A.1.106.1. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.772. SignalP prediction: Yes (prob. 0.969)%3B Curator(s): J. Alves gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2166 SSA_2167 SSA_2167 SSA_2167 2165734 2167461 - multidrug ABC transporter ATPase/permease GC: 47.28%25%3B Transporter classification TC:3.A.1.201.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.763. SignalP prediction: Yes (prob. 0.592)%3B Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2167 SSA_2168 SSA_2168 gpsA gpsA 2167601 2168623 + NAD(P)H-dependent glycerol-3-phosphate dehydrogenase catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2168 SSA_2169 SSA_2169 galU galU 2168586 2169545 + glucose-1-phosphate uridylyltransferase GC: 45.83%25%3B Codon Adaptation Index (CAI): 0.796. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.993)%3B Helix-turn-helix prediction: AraC. gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2169 SSA_2170 SSA_2170 SSA_2170 2169647 2170330 - hypothetical protein GC: 41.37%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.774. SignalP prediction: Yes (prob. 0.942). gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2170 SSA_2171 SSA_2171 SSA_2171 2170314 2170850 - hypothetical protein GC: 44.88%25%3B Codon Adaptation Index (CAI): 0.783. gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2171 SSA_2173 SSA_2173 hipO hipO 2170871 2172004 - aminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase GC: 49.74%25%3B Codon Adaptation Index (CAI): 0.778. gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2173 SSA_2174 SSA_2174 dapD dapD 2172081 2172779 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase GC: 50.07%25%3B Codon Adaptation Index (CAI): 0.775. gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2174 SSA_2175 SSA_2175 SSA_2175 2173236 2174132 - hypothetical protein GC: 39.46%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.721. gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2175 SSA_2176 SSA_2176 SSA_2176 2174359 2175249 - hypothetical protein GC: 39.62%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.771. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2176 SSA_2177 SSA_2177 SSA_2177 2175322 2176305 - hypothetical protein GC: 40.65%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.756. Curator(s): J. Alves gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2177 SSA_2178 SSA_2178 SSA_2178 2176378 2177685 - hypothetical protein GC: 36.31%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): J. Alves gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2178 SSA_2179 SSA_2179 SSA_2179 2178194 2179207 - hypothetical protein GC: 44.87%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.788. Curator(s): J. Alves gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2179 SSA_2181 SSA_2181 SSA_2181 2179238 2180173 - hypothetical protein GC: 41.77%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2181 SSA_2182 SSA_2182 SSA_2182 2180253 2181110 - hypothetical protein GC: 41.26%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.784. gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2182 SSA_2183 SSA_2183 pgi pgi 2181245 2182627 - glucose-6-phosphate isomerase functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2183 SSA_2184 SSA_2184 SSA_2184 2183374 2183844 - hypothetical protein GC: 46.71%25%3B Codon Adaptation Index (CAI): 0.767. gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2184 SSA_2185 SSA_2185 purA purA 2184088 2185380 - adenylosuccinate synthetase catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2185 SSA_2186 SSA_2186 SSA_2186 2185675 2187930 + bifunctional glutamate--cysteine ligase/glutathione synthetase Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2186 SSA_2187 SSA_2187 SSA_2187 2188166 2189011 + membrane associated protein GC: 42.67%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.761. gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2187 SSA_2188 SSA_2188 SSA_2188 2189036 2190292 + hypothetical protein GC: 43.12%25%3B Codon Adaptation Index (CAI): 0.803. gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2188 SSA_2189 SSA_2189 SSA_2189 2190369 2191187 - hypothetical protein GC: 47.86%25%3B Codon Adaptation Index (CAI): 0.778. gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2189 SSA_2190 SSA_2190 hslO hslO 2191306 2192178 + Hsp33-like chaperonin becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2190 SSA_2191 SSA_2191 nifR nifR 2192189 2193142 + hypothetical protein GC: 48.64%25%3B Codon Adaptation Index (CAI): 0.761. gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2191 SSA_2192 SSA_2192 SSA_2192 2193183 2193932 - hypothetical protein GC: 45.07%25%3B Codon Adaptation Index (CAI): 0.793. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.995)%3B Curator(s): T. Kitten %2C J. Alves gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2192 SSA_2193 SSA_2193 SSA_2193 2194101 2194883 - ADP-ribose pyrophosphatase GC: 47.38%25%3B Codon Adaptation Index (CAI): 0.748. Curator(s): J. Alves gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2193 SSA_2194 SSA_2194 SSA_2194 2194938 2195753 - nicotinamide mononucleotide transporter GC: 47.43%25%3B Transporter classification TC:9.A.4.1.1. Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.76. Curator(s): J. Alves gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2194 SSA_2195 SSA_2195 nadR nadR 2195775 2196833 - ATPase/kinase GC: 45.33%25%3B Codon Adaptation Index (CAI): 0.804. Possibly involved in NAD metabolism. Curator(s): J. Alves gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2195 SSA_2196 SSA_2196 SSA_2196 2197019 2197420 - hypothetical protein GC: 44.03%25%3B Codon Adaptation Index (CAI): 0.844. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2196 SSA_2197 SSA_2197 SSA_2197 2197404 2197874 - hypothetical protein GC: 42.89%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.706. SignalP prediction: Yes (prob. 0.53). gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2197 SSA_2198 SSA_2198 SSA_2198 2197932 2198675 - hypothetical protein GC: 47.31%25%3B Codon Adaptation Index (CAI): 0.79. gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2198 SSA_2199 SSA_2199 clpC clpC 2198769 2201198 - ATP-dependent Clp protease%2C ATP-binding subunit GC: 50.16%25%3B Codon Adaptation Index (CAI): 0.776. gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2199 SSA_2200 SSA_2200 ctsR ctsR 2201199 2201663 - CtsR family transcriptional regulator GC: 44.73%25%3B Codon Adaptation Index (CAI): 0.768. Curator(s): J. Alves gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2200 SSA_2201 SSA_2201 SSA_2201 2201947 2202297 + hypothetical protein GC: 41.31%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.791. gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2201 SSA_2202 SSA_2202 tsf tsf 2202397 2203440 - elongation factor Ts EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2202 SSA_2203 SSA_2203 rpsB rpsB 2203513 2204295 - 30S ribosomal protein S2 one of the last subunits in the assembly of the 30S subunit%3B absence of S2 does not inhibit assembly but results in an inactive subunit gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2203 SSA_2204 SSA_2204 SSA_2204 2204803 2205567 + hypothetical protein GC: 41.44%25%3B Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.954). gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2204 SSA_2205 SSA_2205 nusG nusG 2205654 2206190 - transcription antitermination protein NusG Modulates Rho-dependent transcription termination gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2205 SSA_2206 SSA_2206 SSA_2206 2206979 2207335 + hypothetical protein GC: 52.66%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.744. gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2206 SSA_2207 SSA_2207 SSA_2207 2206958 2207311 - hypothetical protein GC: 52.54%25%3B Codon Adaptation Index (CAI): 0.684. gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2207 SSA_2208 SSA_2208 secE secE 2207824 2208003 - preprotein translocase subunit SecE forms a complex with SecY and SecG%3B SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane%2C a process driven by ATP and a proton-motive force gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2208 SSA_2209 SSA_2209 pbp2a pbp2a 2208234 2210462 - penicillin-binding protein 2A GC: 47.78%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.78. gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2209 SSA_2210 SSA_2210 SSA_2210 2210615 2211514 + ribosomal large subunit pseudouridine synthase D GC: 48.56%25%3B Codon Adaptation Index (CAI): 0.762. gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2210 SSA_2211 SSA_2211 SSA_2211 2211589 2212563 - transmembrane protein GC: 41.64%25%3B Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.719. gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2211 SSA_2212 SSA_2212 SSA_2212 2212717 2214018 - polysaccharide transport protein GC: 40.63%25%3B Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.761. gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2212 SSA_2213 SSA_2213 SSA_2213 2214137 2215201 - nucleotide sugar dehydratase GC: 43.19%25%3B Codon Adaptation Index (CAI): 0.77. gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2213 SSA_2214 SSA_2214 SSA_2214 2215203 2215925 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GC: 43.15%25%3B Codon Adaptation Index (CAI): 0.773. gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2214 SSA_2215 SSA_2215 SSA_2215 2215922 2217247 - oligosaccharide repeat-containing polymerase GC: 37.18%25%3B Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.752. SignalP prediction: Yes (prob. 0.517)%3B Curator(s): T. Kitten gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2215 SSA_2216 SSA_2216 licD1 licD1 2217247 2218170 - LPS biosynthesis protein GC: 40.15%25%3B Codon Adaptation Index (CAI): 0.782. gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2216 SSA_2217 SSA_2217 SSA_2217 2218176 2219135 - Cps9H GC: 41.04%25%3B Codon Adaptation Index (CAI): 0.772. gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2217 SSA_2218 SSA_2218 SSA_2218 2219213 2220031 - glycosyltransferase (cell wall biogenesis) Cps9G GC: 41.88%25%3B Transporter classification TC:9.B.32.1.2. Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.754. Curator(s): J. Alves gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2218 SSA_2219 SSA_2219 SSA_2219 2220057 2220917 - UDP-glucose 4-epimerase GC: 41.35%25%3B Codon Adaptation Index (CAI): 0.778. gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2219 SSA_2220 SSA_2220 SSA_2220 2220924 2221529 - galactosyltransferase GC: 41.42%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.8. SignalP prediction: Yes (prob. 0.989). gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2220 SSA_2221 SSA_2221 capD capD 2221545 2223347 - Cps9E GC: 42.48%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.757. gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2221 SSA_2222 SSA_2222 SSA_2222 2223389 2224087 - tyrosine-protein kinase Wze GC: 45.06%25%3B Transporter classification TC:8.A.3.2.2. Codon Adaptation Index (CAI): 0.757. Curator(s): J. Alves gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2222 SSA_2223 SSA_2223 SSA_2223 2224098 2224793 - capsular polysaccharide biosynthesis protein Wzd (chain length regulator) GC: 46.12%25%3B Transporter classification TC:8.A.3.2.1. Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.787. Curator(s): J. Alves gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2223 SSA_2224 SSA_2224 SSA_2224 2224801 2225532 - phosphotyrosine-protein phosphatase GC: 44.81%25%3B Codon Adaptation Index (CAI): 0.774. gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2224 SSA_2225 SSA_2225 cpsA cpsA 2225529 2227037 - LytR family transcriptional regulator GC: 43.61%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.774. SignalP prediction: Yes (prob. 0.997). Capsular polysaccharide biosynthesis transcriptional attenuator. Curator(s): J. Alves gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2225 SSA_2226 SSA_2226 nrdG nrdG 2227241 2227846 - organic radical activating chaperone GC: 49.83%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): J. Alves gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2226 SSA_2227 SSA_2227 SSA_2227 2227806 2228351 - acetyl transferase GC: 46.7%25%3B Codon Adaptation Index (CAI): 0.758. gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2227 SSA_2228 SSA_2228 SSA_2228 2228361 2228858 - acetyltransferase GC: 49.4%25%3B Codon Adaptation Index (CAI): 0.741. Curator(s): J. Alves gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2228 SSA_2229 SSA_2229 SSA_2229 2228911 2229084 - hypothetical protein GC: 40.8%25%3B Codon Adaptation Index (CAI): 0.789. gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2229 SSA_2230 SSA_2230 nrdD nrdD 2229053 2231248 - anaerobic ribonucleoside triphosphate reductase Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2230 SSA_2231 SSA_2231 SSA_2231 2231471 2233018 - Heme/copper-type cytochrome/quinol oxidases subunit 1 GC: 45.16%25%3B Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.783. gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2231 SSA_2233 SSA_2233 SSA_2233 2233057 2233200 - hypothetical protein GC: 43.06%25%3B Codon Adaptation Index (CAI): 0.726. Helix-turn-helix prediction: AraC. gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2233 SSA_2234 SSA_2234 cls cls 2233331 2234866 - phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein GC: 45.7%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.789. SignalP prediction: Yes (prob. 0.477). gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2234 SSA_2235 SSA_2235 SSA_2235 2235061 2235540 - hypothetical protein GC: 48.75%25%3B Codon Adaptation Index (CAI): 0.798. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2235 SSA_2237 SSA_2237 SSA_2237 2235598 2236830 - dihydrofolate:folylpolyglutamate synthetase GC: 48.66%25%3B Codon Adaptation Index (CAI): 0.763. gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2237 SSA_2239 SSA_2239 SSA_2239 2237012 2237323 - hypothetical protein GC: 41.67%25%3B Codon Adaptation Index (CAI): 0.813. gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2239 SSA_2240 SSA_2240 SSA_2240 2237348 2237767 - Holliday junction resolvase-like protein similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2240 SSA_2241 SSA_2241 SSA_2241 2237767 2238033 - hypothetical protein GC: 41.95%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2241 SSA_2242 SSA_2242 SSA_2242 2238211 2238753 - hypothetical protein GC: 43.83%25%3B Codon Adaptation Index (CAI): 0.788. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2242 SSA_2243 SSA_2243 SSA_2243 2238859 2239431 - hypothetical protein GC: 43.46%25%3B Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpII. SignalP prediction: Yes (prob. 0.995). gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2243 SSA_2244 SSA_2244 spxA spxA 2239567 2239965 - Spx family transcriptional regulator the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters%3B in Bacillus subtilis this protein is a substrate for ClpXP protease%3B blocks transcription of the competence regulatory gene encoded by the srf operon%3B regulates a number of genes involved in thiol homeostasis including trxA and trxB%3B monomeric member of ArsC family of proteins%3B does not bind DNA%3B contains a disulfide bond between C10 and C13 which may sense disulfide stress gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2244 SSA_2245 SSA_2245 recA recA 2240051 2241199 - recombinase A catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2245 SSA_2246 SSA_2246 cinA cinA 2241258 2242586 - competence damage-inducible protein A GC: 47.33%25%3B Codon Adaptation Index (CAI): 0.77. Helix-turn-helix prediction: AraC. gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2246 SSA_2247 SSA_2247 SSA_2247 2242785 2243195 + hypothetical protein GC: 42.82%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.77. Helix-turn-helix prediction: AraC. gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2247 SSA_2248 SSA_2248 SSA_2248 2243408 2243899 - hypothetical protein GC: 30.28%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.765. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.547). gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2248 SSA_2249 SSA_2249 SSA_2249 2243896 2244519 - peptide ABC transporter ATPase GC: 32.21%25%3B Transporter classification TC:3.A.1.122.1. Codon Adaptation Index (CAI): 0.731. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2249 SSA_2250 SSA_2250 SSA_2250 2244519 2246501 - peptide ABC transporter permease GC: 31.27%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.732. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998)%3B Curator(s): J. Alves gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2250 SSA_2251 SSA_2251 SSA_2251 2247209 2248057 + hypothetical protein GC: 32.27%25%3B Codon Adaptation Index (CAI): 0.763. Helix-turn-helix prediction: AraC. gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2251 SSA_2252 SSA_2252 SSA_2252 2248302 2248739 - hypothetical protein GC: 41.78%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.745. gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2252 SSA_2253 SSA_2253 tag tag 2248960 2249514 - 3-methyladenine DNA glycosylase GC: 40.54%25%3B Codon Adaptation Index (CAI): 0.813. gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2253 SSA_2254 SSA_2254 ruvA ruvA 2249524 2250114 - Holliday junction DNA helicase RuvA plays an essential role in ATP-dependent branch migration of the Holliday junction gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2254 SSA_2255 SSA_2255 SSA_2255 2250284 2250790 + XRE family transcriptional regulator GC: 40.24%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2255 SSA_2256 SSA_2256 SSA_2256 2250744 2251295 + hypothetical protein GC: 43.12%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.756. gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2256 SSA_2257 SSA_2257 mutL mutL 2251331 2253274 - DNA mismatch repair protein This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2257 SSA_2258 SSA_2258 SSA_2258 2253479 2254789 - hypothetical protein GC: 40.73%25%3B Codon Adaptation Index (CAI): 0.801. Curator(s): T. Kitten gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2258 SSA_2259 SSA_2259 SSA_2259 2254817 2255512 - hypothetical protein GC: 35.34%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.761. gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2259 SSA_2260 SSA_2260 mutS mutS 2255691 2258240 - DNA mismatch repair protein MutS This protein performs the mismatch recognition step during the DNA repair process gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2260 SSA_2261 SSA_2261 SSA_2261 2258319 2258756 - transcriptional repressor (arginine synthesis) GC: 46.58%25%3B Codon Adaptation Index (CAI): 0.752. Curator(s): J. Alves gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2261 SSA_2262 SSA_2262 argS argS 2259057 2260745 + arginyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class-I aminoacyl-tRNA synthetase gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2262 SSA_2263 SSA_2263 nrdI nrdI 2260778 2261266 - flavoprotein NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2263 SSA_2264 SSA_2264 SSA_2264 2261329 2261847 - hypothetical protein GC: 39.69%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.711. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.967)%3B Curator(s): T. Kitten gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2264 SSA_2265 SSA_2265 malP malP 2262026 2264287 - maltodextrin phosphorylase GC: 45%25%3B Codon Adaptation Index (CAI): 0.779. gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2265 SSA_2266 SSA_2266 malQ malQ 2264320 2265831 - 4-alpha-glucanotransferase amylomaltase%3B acts to release glucose from maltodextrins gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2266 SSA_2267 SSA_2267 malR malR 2266267 2267250 + lactose operon transcriptional repressor%2C LacI family GC: 46.95%25%3B Codon Adaptation Index (CAI): 0.754. Helix-turn-helix prediction: LysR\AraC. Curator(s): J. Alves gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2267 SSA_2268 SSA_2268 pulA pulA 2267368 2269446 + Type II secretory pathway%2C pullulanase PulA glycosidase GC: 47.76%25%3B Codon Adaptation Index (CAI): 0.759. gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2268 SSA_2269 SSA_2269 SSA_2269 2269482 2270417 - hypothetical protein GC: 44.44%25%3B Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.773. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.998). gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2269 SSA_2270 SSA_2270 aspS aspS 2270404 2272158 - aspartyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2270 SSA_2271 SSA_2271 SSA_2271 2272328 2272540 - hypothetical protein GC: 45.54%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.748. SignalP prediction: Yes (prob. 0.791)%3B Curator(s): T. Kitten gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2271 SSA_2272 SSA_2272 SSA_2272 2272667 2272966 - hypothetical protein GC: 34%25%3B Codon Adaptation Index (CAI): 0.792. gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2272 SSA_2273 SSA_2273 SSA_2273 2272987 2273658 - hypothetical protein GC: 32.14%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.757. gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2273 SSA_2274 SSA_2274 SSA_2274 2273652 2275322 - hypothetical protein GC: 40.81%25%3B Codon Adaptation Index (CAI): 0.759. Helix-turn-helix prediction: AraC. gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2274 SSA_2275 SSA_2275 SSA_2275 2275315 2275680 - hypothetical protein GC: 37.43%25%3B Codon Adaptation Index (CAI): 0.746. gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2275 SSA_2276 SSA_2276 SSA_2276 2275677 2276063 - hypothetical protein GC: 42.12%25%3B Codon Adaptation Index (CAI): 0.758. gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2276 SSA_2277 SSA_2277 SSA_2277 2276073 2280497 - DNA segregation ATPase FtsK/SpoIIIE family protein GC: 49.69%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.747. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2277 SSA_2278 SSA_2278 ukp ukp 2280500 2281759 - Ukp protein GC: 45.48%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.791. gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2278 SSA_2279 SSA_2279 SSA_2279 2281761 2282000 - hypothetical protein GC: 42.92%25%3B Codon Adaptation Index (CAI): 0.815. gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2279 SSA_2281 SSA_2281 SSA_2281 2282002 2282460 - hypothetical protein GC: 43.14%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.743. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2281 SSA_2282 SSA_2282 SSA_2282 2282467 2285427 - Phage infection protein GC: 40.76%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.795. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2282 SSA_2283 SSA_2283 SSA_2283 2285627 2285914 - hypothetical protein GC: 35.76%25%3B Codon Adaptation Index (CAI): 0.829. Curator(s): J. Alves gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2283 SSA_2284 SSA_2284 hisS hisS 2286082 2287362 - histidyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2284 SSA_2285 SSA_2285 SSA_2285 2287544 2287885 + hypothetical protein GC: 47.08%25%3B Codon Adaptation Index (CAI): 0.775. gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2285 SSA_2286 SSA_2286 ilvD ilvD 2287968 2289686 - dihydroxy-acid dehydratase catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2286 SSA_2287 SSA_2287 rpmF rpmF 2289961 2290143 + 50S ribosomal protein L32 some L32 proteins have zinc finger motifs consisting of CXXC while others do not gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2287 SSA_2288 SSA_2288 cadD2 cadD2 2290601 2291215 + cadmium resistance transporter GC: 33.98%25%3B Transporter classification TC:2.A.77.1.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.748. Curator(s): J. Alves gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2288 SSA_2289 SSA_2289 cadX cadX 2291227 2291565 + cadmium efflux system transcriptional regulator (ArsR-like) GC: 32.45%25%3B Codon Adaptation Index (CAI): 0.716. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2289 SSA_2290 SSA_2290 SSA_2290 2291588 2293024 + hypothetical protein GC: 31.52%25%3B Codon Adaptation Index (CAI): 0.749. gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2290 SSA_2291 SSA_2291 SSA_2291 2293344 2293793 + hypothetical protein GC: 36.67%25%3B Codon Adaptation Index (CAI): 0.782. gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2291 SSA_2292 SSA_2292 SSA_2292 2294313 2295413 + DNA segregation ATPase FtsK/SpoIIIE-like protein GC: 40.24%25%3B Codon Adaptation Index (CAI): 0.745. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2292 SSA_2293 SSA_2293 SSA_2293 2295410 2296015 + hypothetical protein GC: 37.95%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.711. SignalP prediction: Yes (prob. 0.497)%3B Helix-turn-helix prediction: AraC. gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2293 SSA_2294 SSA_2294 SSA_2294 2296222 2296827 + hypothetical protein GC: 38.45%25%3B Codon Adaptation Index (CAI): 0.745. gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2294 SSA_2295 SSA_2295 SSA_2295 2297158 2298423 + phage integrase family integrase/recombinase GC: 34.91%25%3B Codon Adaptation Index (CAI): 0.775. Curator(s): J. Alves gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2295 SSA_2296 SSA_2296 SSA_2296 2298639 2298863 - XRE family transcriptional regulator GC: 45.33%25%3B Codon Adaptation Index (CAI): 0.783. Curator(s): J. Alves gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2296 SSA_2297 SSA_2297 SSA_2297 2298866 2299462 - hypothetical protein GC: 39.53%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.778. SignalP prediction: Yes (prob. 0.918). gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2297 SSA_2298 SSA_2298 SSA_2298 2299659 2300693 - serine protease GC: 45.31%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. Curator(s): J. Alves gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2298 SSA_2299 SSA_2299 SSA_2299 2300745 2301635 - hypothetical protein GC: 42.87%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.761. gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2299 SSA_2300 SSA_2300 SSA_2300 2301684 2302598 - hypothetical protein GC: 38.25%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.758. gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2300 SSA_2301 SSA_2301 lytB lytB 2302759 2303358 - S-layer protein GC: 45%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.771. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2301 SSA_2302 SSA_2302 SSA_2302 2303394 2304134 - Type IV fimbrial biogenesis protein%2C prepilin cysteine protease (C20) PilD GC: 45.88%25%3B Transporter classification TC:3.A.15.2.1. Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.753. gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2302 SSA_2303 SSA_2303 SSA_2303 2304203 2305267 - hypothetical protein GC: 43.76%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 1). gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2303 SSA_2304 SSA_2304 SSA_2304 2305275 2306360 - hypothetical protein GC: 44.2%25%3B Codon Adaptation Index (CAI): 0.817. Curator(s): J. Alves gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2304 SSA_2305 SSA_2305 SSA_2305 2306416 2308149 - hypothetical protein GC: 46.37%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.765. gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2305 SSA_2307 SSA_2307 SSA_2307 2308413 2309999 - hypothetical protein GC: 45.49%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.782. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.552). gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2307 SSA_2308 SSA_2308 SSA_2308 2309983 2310564 - hypothetical protein GC: 41.75%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.753. SignalP prediction: Yes (prob. 0.573). gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2308 SSA_2309 SSA_2309 SSA_2309 2310564 2311976 - fimbrial assembly protein GC: 44.23%25%3B Codon Adaptation Index (CAI): 0.795. gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2309 SSA_2310 SSA_2310 SSA_2310 2312021 2313508 - hypothetical protein GC: 39.52%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.771. SignalP prediction: Yes (prob. 0.969)%3B Curator(s): J. Alves gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2310 SSA_2311 SSA_2311 norD norD 2313521 2314855 - fused nitric oxide reductase NorD/von Willebrand factor type A domain-containing protein GC: 38.88%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.774. Curator(s): J. Alves gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2311 SSA_2312 SSA_2312 SSA_2312 2314883 2315371 - hypothetical protein GC: 43.76%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.751. SignalP prediction: Yes (prob. 1). gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2312 SSA_2313 SSA_2313 SSA_2313 2315495 2315938 - hypothetical protein GC: 45.95%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.797. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.999). gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2313 SSA_2314 SSA_2314 SSA_2314 2315976 2316425 - hypothetical protein GC: 42.89%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.801. SignalP prediction: Yes (prob. 0.982). gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2314 SSA_2315 SSA_2315 SSA_2315 2316577 2317035 - hypothetical protein GC: 41.61%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.803. SignalP prediction: Yes (prob. 0.982)%3B Weakly similar to type IV pilin. Curator(s): J. Alves gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2315 SSA_2316 SSA_2316 SSA_2316 2317206 2318432 - general secretory pathway protein F GC: 48.17%25%3B Transporter classification TC:3.A.15.2.1. Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.744. gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2316 SSA_2317 SSA_2317 SSA_2317 2318436 2319500 - Tfp pilus assembly protein%2C pilus retraction ATPase PilT GC: 50.42%25%3B Transporter classification TC:3.A.15.2.1. Codon Adaptation Index (CAI): 0.737. gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2317 SSA_2318 SSA_2318 SSA_2318 2319502 2321184 - PilB-like pili biogenesis ATPase GC: 45.45%25%3B Transporter classification TC:3.A.15.2.1. Codon Adaptation Index (CAI): 0.755. gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2318 SSA_2320 SSA_2320 SSA_2320 2322392 2325886 - hypothetical protein GC: 39.71%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.766. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2320 SSA_2321 SSA_2321 czcD czcD 2326140 2327015 - cation (Co/Zn/Cd) efflux protein GC: 45.78%25%3B Transporter classification TC:2.A.4.1.3. Transmembrane domains: 5. Codon Adaptation Index (CAI): 0.773. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.997)%3B Curator(s): J. Alves gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2321 SSA_2322 SSA_2322 SSA_2322 2327184 2327705 + TetR/AcrR family transcriptional regulator GC: 44.06%25%3B Codon Adaptation Index (CAI): 0.789. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2322 SSA_2323 SSA_2323 SSA_2323 2327744 2328910 + transporter GC: 48.24%25%3B Transmembrane domains: 12. Codon Adaptation Index (CAI): 0.751. SignalP prediction: Yes (prob. 0.983). gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2323 SSA_2324 SSA_2324 SSA_2324 2328937 2330199 - hypothetical protein GC: 45.05%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.758. gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2324 SSA_2325 SSA_2325 SSA_2325 2330203 2330811 - 3-methyladenine DNA glycosylase GC: 49.92%25%3B Codon Adaptation Index (CAI): 0.778. gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2325 SSA_2327 SSA_2327 SSA_2327 2331065 2331460 + hypothetical protein GC: 41.92%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.823. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1). gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2327 SSA_2328 SSA_2328 fcsR fcsR 2331623 2332369 + sugar metabolism transcriptional repressor GC: 45.78%25%3B Codon Adaptation Index (CAI): 0.756. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2328 SSA_2329 SSA_2329 SSA_2329 2332402 2333229 + hypothetical protein GC: 48.91%25%3B Codon Adaptation Index (CAI): 0.747. gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2329 SSA_2330 SSA_2330 SSA_2330 2333260 2333745 - acetyltransferase GC: 50.62%25%3B Codon Adaptation Index (CAI): 0.77. gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2330 SSA_2331 SSA_2331 dltD dltD 2333786 2335054 - D-alanine transfer protein GC: 47.83%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.775. SignalP prediction: Yes (prob. 0.453)%3B Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid. gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2331 SSA_2332 SSA_2332 dltC dltC 2335047 2335286 - D-alanine--poly(phosphoribitol) ligase subunit 2 D-alanyl carrier protein subunit%3B involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid%3B D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2332 SSA_2333 SSA_2333 dltB dltB 2335306 2336550 - hypothetical protein GC: 45.46%25%3B Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.778. gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2333 SSA_2334 SSA_2334 dltA dltA 2336547 2338097 - D-alanine--poly(phosphoribitol) ligase subunit 1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2334 SSA_2335 SSA_2335 dltX dltX 2338117 2338248 - D-Ala-teichoic acid biosynthesis protein GC: 33.33%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.843. Curator(s): J. Alves gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2335 SSA_2336 SSA_2336 SSA_2336 2338507 2338845 + PadR family transcriptional regulator GC: 42.77%25%3B Codon Adaptation Index (CAI): 0.703. Curator(s): J. Alves gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2336 SSA_2337 SSA_2337 SSA_2337 2338820 2339419 + hypothetical protein GC: 46.17%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.725. gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2337 SSA_2338 SSA_2338 SSA_2338 2339412 2340452 + hypothetical protein GC: 44.67%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.741. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1)%3B Partially similar to immunoglobulin A1 protease. Curator(s): J. Alves gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2338 SSA_2339 SSA_2339 SSA_2339 2340596 2341549 + microcin C7 resistance protein GC: 48.64%25%3B Codon Adaptation Index (CAI): 0.747. Helix-turn-helix prediction: AraC. gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2339 SSA_2340 SSA_2340 SSA_2340 2341629 2342933 - hypothetical protein GC: 46.21%25%3B Codon Adaptation Index (CAI): 0.775. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2340 SSA_2342 SSA_2342 SSA_2342 2342890 2343603 - SPX domain-containing protein GC: 44.54%25%3B Codon Adaptation Index (CAI): 0.786. Possibly involved in polyphosphate accumulation. gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2342 SSA_2343 SSA_2343 SSA_2343 2343793 2346216 - hypothetical protein GC: 44.27%25%3B Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.755. gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2343 SSA_2344 SSA_2344 SSA_2344 2346677 2346826 + hypothetical protein GC: 37.33%25%3B Codon Adaptation Index (CAI): 0.751. gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2344 SSA_2345 SSA_2345 SSA_2345 2347059 2347562 + hypothetical protein GC: 41.67%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.787. Helix-turn-helix prediction: AraC. gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2345 SSA_2346 SSA_2346 SSA_2346 2347692 2348636 - 3-oxoacyl-ACP synthase GC: 45.61%25%3B Codon Adaptation Index (CAI): 0.767. gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2346 SSA_2347 SSA_2347 SSA_2347 2348737 2350029 - coenzyme F390 synthetase GC: 45.48%25%3B Codon Adaptation Index (CAI): 0.764. gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2347 SSA_2348 SSA_2348 SSA_2348 2349965 2350810 - metal dependent hydrolase GC: 45.63%25%3B Codon Adaptation Index (CAI): 0.79. gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2348 SSA_2349 SSA_2349 galE1 galE1 2350767 2351798 - dTDP-4-dehydrorhamnose 3%2C5-epimerase GC: 43.99%25%3B Codon Adaptation Index (CAI): 0.795. gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2349 SSA_2350 SSA_2350 rpsD rpsD 2352001 2352738 - 30S ribosomal protein S4 primary rRNA binding protein%3B nucleates 30S assembly%3B involved in translational accuracy with proteins S5 and S12%3B interacts with protein S5%3B involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA%3B interacts with transcription complex and functions similar to protein NusA in antitermination gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2350 SSA_2351 SSA_2351 SSA_2351 2352875 2353597 - nitrate/sulfonate/bicarbonate ABC transporter ATPase GC: 48.13%25%3B Transporter classification TC:3.A.1.16.1. Codon Adaptation Index (CAI): 0.744. Curator(s): J. Alves gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2351 SSA_2352 SSA_2352 SSA_2352 2353597 2354598 - nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein GC: 42.81%25%3B Codon Adaptation Index (CAI): 0.804. LipoP prediction: SpII. SignalP prediction: Yes (prob. 1)%3B Curator(s): J. Alves gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2352 SSA_2353 SSA_2353 SSA_2353 2354640 2355392 - nitrate/sulfonate/bicarbonate ABC transporter permease GC: 46.75%25%3B Transporter classification TC:3.A.1.17.1. Transmembrane domains: 6. Codon Adaptation Index (CAI): 0.764. Curator(s): J. Alves gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2353 SSA_2354 SSA_2354 SSA_2354 2355695 2356327 - hypothetical protein GC: 40.28%25%3B Codon Adaptation Index (CAI): 0.812. gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2354 SSA_2355 SSA_2355 SSA_2355 2356415 2356690 - hypothetical protein GC: 40.58%25%3B Codon Adaptation Index (CAI): 0.816. gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2355 SSA_2356 SSA_2356 dnaC dnaC 2356693 2358048 - replicative DNA helicase unwinds double stranded DNA gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2356 SSA_2357 SSA_2357 rplI rplI 2358075 2358527 - 50S ribosomal protein L9 in Escherichia coli this protein is wrapped around the base of the L1 stalk gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2357 SSA_2358 SSA_2358 SSA_2358 2358524 2360587 - hypothetical protein GC: 43.02%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.783. SignalP prediction: Yes (prob. 0.907). gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2358 SSA_2359 SSA_2359 gidA gidA 2360703 2362610 - tRNA uridine 5-carboxymethylaminomethyl modification protein GidA GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2359 SSA_2360 SSA_2360 mnmA mnmA 2362748 2363869 - tRNA-specific 2-thiouridylase MnmA catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2360 SSA_2361 SSA_2361 sdaB sdaB 2364168 2364839 + L-serine dehydratase beta subunit GC: 41.96%25%3B Codon Adaptation Index (CAI): 0.788. gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2361 SSA_2362 SSA_2362 sdaA sdaA 2364848 2365720 + L-serine dehydratase alpha subunit GC: 45.7%25%3B Codon Adaptation Index (CAI): 0.81. gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2362 SSA_2363 SSA_2363 SSA_2363 2365772 2366419 + phosphoglycolate phosphatase GC: 38.73%25%3B Codon Adaptation Index (CAI): 0.756. Helix-turn-helix prediction: AraC. gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2363 SSA_2364 SSA_2364 SSA_2364 2366532 2367122 - hypothetical protein GC: 42.81%25%3B Codon Adaptation Index (CAI): 0.777. LipoP prediction: SpI. SignalP prediction: Yes (prob. 1). gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2364 SSA_2365 SSA_2365 SSA_2365 2367333 2368127 - cobalt transport protein cbiQ GC: 41.13%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.774. gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2365 SSA_2366 SSA_2366 cbiO cbiO 2368120 2368959 - cobalt transporter ATP-binding subunit with CbiNQ forms the ABC transporter for cobalt import%3B Streptococcus has two adjacent copies of this gene gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2366 SSA_2367 SSA_2367 cbiO cbiO 2368935 2369822 - cobalt transporter ATP-binding subunit with CbiNQ forms the ABC transporter for cobalt import%3B Streptococcus has two adjacent copies of this gene gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2367 SSA_2368 SSA_2368 pgsA pgsA 2369773 2370312 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GC: 37.41%25%3B Transmembrane domains: 3. Codon Adaptation Index (CAI): 0.785. SignalP prediction: Yes (prob. 0.554). gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2368 SSA_2369 SSA_2369 SSA_2369 2370329 2371183 - hypothetical protein GC: 41.64%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.759. gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2369 SSA_2370 SSA_2370 SSA_2370 2371217 2372512 - zinc-dependent peptidase GC: 39.04%25%3B Codon Adaptation Index (CAI): 0.807. Curator(s): J. Alves gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2370 SSA_2371 SSA_2371 SSA_2371 2372512 2373771 - Zn-dependent peptidase GC: 38.25%25%3B Codon Adaptation Index (CAI): 0.816. Curator(s): J. Alves gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2371 SSA_2372 SSA_2372 SSA_2372 2373947 2374345 + hypothetical protein GC: 37.59%25%3B Codon Adaptation Index (CAI): 0.798. Curator(s): J. Alves%3B (possible S4-like RNA-binding protein) gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2372 SSA_2373 SSA_2373 recF recF 2374348 2375442 + recombination protein F Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2373 SSA_2374 SSA_2374 guaB guaB 2375624 2377105 - inosine 5'-monophosphate dehydrogenase catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2374 SSA_2375 SSA_2375 trpS trpS 2377311 2378336 - tryptophanyl-tRNA synthetase II catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2375 SSA_2376 SSA_2376 SSA_2376 2378884 2380248 + ABC transporter ATPase GC: 39.41%25%3B Transporter classification TC:3.A.1.121.2. Codon Adaptation Index (CAI): 0.805. Curator(s): J. Alves gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2376 SSA_2377 SSA_2377 SSA_2377 2380324 2382909 + copper ABC transporter permease GC: 33.33%25%3B Transmembrane domains: 14. Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2377 SSA_2378 SSA_2378 comE comE 2383219 2383983 - two-component system LytR/AlgR family transcriptional regulator GC: 31.9%25%3B Codon Adaptation Index (CAI): 0.807. Curator(s): J. Alves gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2378 SSA_2379 SSA_2379 comD comD 2383989 2385323 - signal transduction protein GC: 31.99%25%3B Transmembrane domains: 7. Codon Adaptation Index (CAI): 0.797. Curator(s): J. Alves gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2379 SSA_2380 SSA_2380 SSA_2380 2385755 2386234 - rRNA large subunit methyltransferase SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2380 SSA_2381 SSA_2381 htrA htrA 2386438 2387610 + DegP protein GC: 36.32%25%3B Transmembrane domains: 1. Codon Adaptation Index (CAI): 0.806. LipoP prediction: SpI. SignalP prediction: Yes (prob. 0.974). gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2381 SSA_2382 SSA_2382 SSA_2382 2387656 2388435 + chromosome partitioning protein ParB GC: 34.49%25%3B Codon Adaptation Index (CAI): 0.781. Curator(s): J. Alves gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2382 SSA_2383 SSA_2383 doc doc 1461796 1462206 - prophage maintenance system killer protein (DOC: death-on-curing) GC: 30.39%25%3B Codon Adaptation Index (CAI): 0.762. Curator(s): T. Kitten %2C J. Alves gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2383 SSA_2384 SSA_2384 SSA_2384 1465558 1465986 - acetyltransferase GC: 31.85%25%3B Codon Adaptation Index (CAI): 0.789. Curator(s): T. Kitten gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2384 SSA_2385 SSA_2385 SSA_2385 1752682 1753056 + hypothetical protein GC: 35.2%25%3B Transmembrane domains: 4. Codon Adaptation Index (CAI): 0.725. SignalP prediction: Yes (prob. 0.874)%3B Weak similarity to partial Mg/Co/Ni transporter domain. Curator(s): T. Kitten %2C J. Alves gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2385 SSA_2386 SSA_2386 SSA_2386 2150148 2150318 - hypothetical protein GC: 30.99%25%3B Transmembrane domains: 2. Codon Adaptation Index (CAI): 0.766. Curator(s): T. Kitten gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2386 SSA_2387 SSA_2387 SSA_2387 2031935 2032303 - arsenical resistance operon transcription repressor GC: 32.52%25%3B Codon Adaptation Index (CAI): 0.701. Helix-turn-helix prediction: AraC. Curator(s): T. Kitten %2C J. Alves gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2387 SSA_2388 SSA_2388 SSA_2388 2031757 2031912 - hypothetical protein GC: 27.56%25%3B Codon Adaptation Index (CAI): 0.729. Curator(s): J. Alves gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2388 SSA_2389 SSA_2389 SSA_2389 2031935 2032273 - arsenical resistance operon transcription repressor GC: 31.86%25%3B Codon Adaptation Index (CAI): 0.704. Helix-turn-helix prediction: AraC. Curator(s): J. Alves gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2389 SSA_2390 SSA_2390 SSA_2390 2989 3183 + hypothetical protein GC: 38.46%25%3B Codon Adaptation Index (CAI): 0.78. Curator(s): J. Alves gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2390 SSA_2391 SSA_2391 rpsN rpsN 114392 114577 + 30S ribosomal protein S14 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group appear to contain the zinc-binding motif gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2391 SSA_2392 SSA_2392 rpmJ rpmJ 120338 120454 + 50S ribosomal protein L36 smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group have the motif gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2392 SSA_2393 SSA_2393 SSA_2393 204196 204399 + XRE family transcriptional regulator GC: 39.22%25%3B Codon Adaptation Index (CAI): 0.741. Curator(s): J. Alves gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2393 SSA_2394 SSA_2394 comC comC 2385351 2385458 - competence stimulating peptide GC: 31.48%25%3B Codon Adaptation Index (CAI): ND. Curator(s): T. Kitten gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2394 SSA_2400 SSA_2400 SSA_2400 16379 17929 + 16S small subunit ribosomal RNA rRNA_16S_1 rRNA gene17 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2400 SSA_2401 SSA_2401 SSA_2401 124363 125913 + 16S small subunit ribosomal RNA rRNA_16S_2 rRNA gene149 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2401 SSA_2402 SSA_2402 SSA_2402 1827860 1829410 - 16S small subunit ribosomal RNA rRNA_16S_3 rRNA gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2402 SSA_2403 SSA_2403 SSA_2403 1933921 1935471 - 16S small subunit ribosomal RNA rRNA_16S_4 rRNA gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2403 SSA_2404 SSA_2404 SSA_2404 18190 21087 + 23S large subunit ribosomal RNA rRNA_23S_1 rRNA gene19 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2404 SSA_2405 SSA_2405 SSA_2405 126174 129073 + 23S large subunit ribosomal RNA rRNA_23S_2 rRNA gene151 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2405 SSA_2406 SSA_2406 SSA_2406 1824702 1827599 - 23S large subunit ribosomal RNA rRNA_23S_3 rRNA gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2406 SSA_2407 SSA_2407 SSA_2407 1930762 1933660 - 23S large subunit ribosomal RNA rRNA_23S_4 rRNA gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2407 SSA_2408 SSA_2408 SSA_2408 21206 21321 + 5S ribosomal RNA rRNA_5S_1 rRNA gene20 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2408 SSA_2409 SSA_2409 SSA_2409 129192 129307 + 5S ribosomal RNA rRNA_5S_2 rRNA gene152 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2409 SSA_2410 SSA_2410 SSA_2410 1824468 1824583 - 5S ribosomal RNA rRNA_5S_3 rRNA gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2410 SSA_2411 SSA_2411 SSA_2411 1930528 1930643 - 5S ribosomal RNA rRNA_5S_4 rRNA gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2411 SSA_2412 SSA_2412 SSA_2412 15263 15334 + tRNA-Glu tRNA gene14 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2412 SSA_2413 SSA_2413 SSA_2413 15340 15416 + tRNA-Asn tRNA gene15 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2413 SSA_2414 SSA_2414 SSA_2414 17991 18063 + tRNA-Ala tRNA gene18 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2414 SSA_2415 SSA_2415 SSA_2415 21325 21397 + tRNA-Val tRNA gene21 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2415 SSA_2416 SSA_2416 SSA_2416 21414 21486 + tRNA-Asp tRNA gene22 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2416 SSA_2417 SSA_2417 SSA_2417 21519 21591 + tRNA-Lys tRNA gene23 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2417 SSA_2418 SSA_2418 SSA_2418 21597 21678 + tRNA-Leu tRNA gene24 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2418 SSA_2419 SSA_2419 SSA_2419 21695 21767 + tRNA-Thr tRNA gene25 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2419 SSA_2420 SSA_2420 SSA_2420 21782 21853 + tRNA-Gly tRNA gene26 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2420 SSA_2421 SSA_2421 SSA_2421 21861 21946 + tRNA-Leu tRNA-Leu_2 tRNA gene27 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2421 SSA_2422 SSA_2422 SSA_2422 21978 22051 + tRNA-Arg tRNA gene28 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2422 SSA_2423 SSA_2423 SSA_2423 22071 22144 + tRNA-Pro tRNA gene29 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2423 SSA_2424 SSA_2424 SSA_2424 22150 22223 + tRNA-Met tRNA gene30 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2424 SSA_2425 SSA_2425 SSA_2425 22237 22310 + tRNA-Met tRNA-Met_2 tRNA gene31 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2425 SSA_2426 SSA_2426 SSA_2426 22323 22412 + tRNA-Ser tRNA gene32 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2426 SSA_2427 SSA_2427 SSA_2427 22432 22505 + tRNA-Met tRNA-Met_3 tRNA gene33 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2427 SSA_2428 SSA_2428 SSA_2428 22511 22583 + tRNA-Phe tRNA gene34 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2428 SSA_2429 SSA_2429 SSA_2429 22604 22674 + tRNA-Gly tRNA-Gly_2 tRNA gene35 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2429 SSA_2430 SSA_2430 SSA_2430 22708 22781 + tRNA-Ile tRNA gene36 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2430 SSA_2431 SSA_2431 SSA_2431 22791 22878 + tRNA-Ser tRNA-Ser_2 tRNA gene37 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2431 SSA_2432 SSA_2432 SSA_2432 125975 126047 + tRNA-Ala tRNA-Ala_2 tRNA gene150 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2432 SSA_2433 SSA_2433 SSA_2433 129311 129383 + tRNA-Val tRNA-Val_2 tRNA gene153 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2433 SSA_2434 SSA_2434 SSA_2434 129391 129461 + tRNA-Gly tRNA-Gly_3 tRNA gene154 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2434 SSA_2435 SSA_2435 SSA_2435 129495 129568 + tRNA-Ile tRNA-Ile_2 tRNA gene155 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2435 SSA_2436 SSA_2436 SSA_2436 129584 129655 + tRNA-Glu tRNA-Glu_2 tRNA gene156 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2436 SSA_2437 SSA_2437 SSA_2437 129663 129752 + tRNA-Ser tRNA-Ser_3 tRNA gene157 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2437 SSA_2438 SSA_2438 SSA_2438 129772 129845 + tRNA-Met tRNA-Met_4 tRNA gene158 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2438 SSA_2439 SSA_2439 SSA_2439 129851 129923 + tRNA-Phe tRNA-Phe_2 tRNA gene159 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2439 SSA_2440 SSA_2440 SSA_2440 129937 130017 + tRNA-Tyr tRNA gene160 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2440 SSA_2441 SSA_2441 SSA_2441 130026 130096 + tRNA-Trp tRNA gene161 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2441 SSA_2442 SSA_2442 SSA_2442 130107 130179 + tRNA-His tRNA gene162 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2442 SSA_2443 SSA_2443 SSA_2443 130193 130264 + tRNA-Gln tRNA gene163 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2443 SSA_2444 SSA_2444 SSA_2444 130277 130360 + tRNA-Leu tRNA-Leu_3 tRNA gene164 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2444 SSA_2445 SSA_2445 SSA_2445 807051 807141 + tRNA-Ser tRNA-Ser_4 tRNA gene827 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2445 SSA_2446 SSA_2446 SSA_2446 2127192 2127274 + tRNA-Leu tRNA-Leu_4 tRNA gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2446 SSA_2447 SSA_2447 SSA_2447 2204603 2204673 + tRNA-Cys tRNA gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2447 SSA_2448 SSA_2448 SSA_2448 2385639 2385712 - tRNA-Arg tRNA-Arg_2 tRNA gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2448 SSA_2449 SSA_2449 SSA_2449 2383102 2383173 - tRNA-Glu tRNA-Glu_3 tRNA gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2449 SSA_2450 SSA_2450 SSA_2450 2383020 2383096 - tRNA-Asn tRNA-Asn_2 tRNA gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2450 SSA_2451 SSA_2451 SSA_2451 1990237 1990325 - tRNA-Leu tRNA-Leu_5 tRNA gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2451 SSA_2452 SSA_2452 SSA_2452 1982039 1982111 - tRNA-Thr tRNA-Thr_2 tRNA gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2452 SSA_2453 SSA_2453 SSA_2453 1933787 1933859 - tRNA-Ala tRNA-Ala_3 tRNA gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2453 SSA_2454 SSA_2454 SSA_2454 1930449 1930522 - tRNA-Asn tRNA-Asn_3 tRNA gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2454 SSA_2455 SSA_2455 SSA_2455 1827726 1827798 - tRNA-Ala tRNA-Ala_4 tRNA gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2455 SSA_2456 SSA_2456 SSA_2456 1824392 1824464 - tRNA-Val tRNA-Val_3 tRNA gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2456 SSA_2457 SSA_2457 SSA_2457 1824303 1824375 - tRNA-Asp tRNA-Asp_2 tRNA gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2457 SSA_2458 SSA_2458 SSA_2458 1824198 1824270 - tRNA-Lys tRNA-Lys_2 tRNA gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2458 SSA_2459 SSA_2459 SSA_2459 1824111 1824192 - tRNA-Leu tRNA-Leu_6 tRNA gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2459 SSA_2460 SSA_2460 SSA_2460 1824022 1824094 - tRNA-Thr tRNA-Thr_3 tRNA gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2460 SSA_2461 SSA_2461 SSA_2461 1823936 1824007 - tRNA-Gly tRNA-Gly_4 tRNA gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2461 SSA_2462 SSA_2462 SSA_2462 1823843 1823928 - tRNA-Leu tRNA-Leu_7 tRNA gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2462 SSA_2463 SSA_2463 SSA_2463 1823738 1823811 - tRNA-Arg tRNA-Arg_3 tRNA gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2463 SSA_2464 SSA_2464 SSA_2464 1823607 1823680 - tRNA-Arg tRNA-Arg_4 tRNA gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2464 SSA_2465 SSA_2465 SSA_2465 1823484 1823560 - tRNA-Pro tRNA-Pro_2 tRNA gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2465 SSA_2466 SSA_2466 SSA_2466 1617445 1617517 - tRNA-Thr tRNA-Thr_4 tRNA gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2466 SSA_2467 SSA_2467 SSA_2467 1290162 1290233 - tRNA-Arg tRNA-Arg_5 tRNA gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2467 SSA_2468 SSA_2468 SSA_2468 1247211 1247291 - tRNA-Tyr tRNA-Tyr_2 tRNA gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2468 SSA_2469 SSA_2469 SSA_2469 1247126 1247197 - tRNA-Gln tRNA-Gln_2 tRNA gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2469 SSA_2470 SSA_2470 SSA_2470 1245602 1245673 - tRNA-Arg tRNA-Arg_6 tRNA gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2470 SSA_2471 SSA_2471 SSA_2471 230927 230999 - tRNA-Lys tRNA-Lys_3 tRNA gene265 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2471 SSA_2472 SSA_2472 SSA_2472 228378 228450 - tRNA-Lys tRNA-Lys_4 tRNA gene262 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2472 SSA_2500 SSA_2500 ffs ffs 2183262 2183334 - gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=SSA_2500