locus-tag	class	description
ATM98_RS00005	COG0116	Belongs to the methyltransferase superfamily
ATM98_RS00015	COG1854	S-ribosylhomocysteine lyase activity
ATM98_RS00020	COG1418	mRNA catabolic process
ATM98_RS00025	COG0194	GDP metabolic process
ATM98_RS00030	COG1758	RNA polymerase activity
ATM98_RS00035	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ATM98_RS00045	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ATM98_RS00045	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATM98_RS00050	COG0631	protein serine/threonine phosphatase activity
ATM98_RS00055	COG2815	serine threonine protein kinase
ATM98_RS00055	COG0515	serine threonine protein kinase
ATM98_RS00065	COG4585	Histidine kinase
ATM98_RS00070	COG2197	response regulator
ATM98_RS00080	COG1185	polyribonucleotide nucleotidyltransferase activity
ATM98_RS00090	COG1739	Uncharacterized protein family UPF0029
ATM98_RS00095	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
ATM98_RS00100	COG1040	competence protein
ATM98_RS00195	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ATM98_RS00220	COG0519	Catalyzes the synthesis of GMP from XMP
ATM98_RS00235	COG0525	valine-tRNA ligase activity
ATM98_RS00275	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ATM98_RS00285	COG0742	ribosomal rna small subunit methyltransferase
ATM98_RS00290	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
ATM98_RS00295	COG3480	Lon protease (S16) C-terminal proteolytic domain
ATM98_RS00300	COG0785	Cytochrome C biogenesis protein
ATM98_RS00310	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATM98_RS00315	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ATM98_RS00315	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ATM98_RS00320	COG2207	Transcriptional regulator
ATM98_RS00320	COG4753	response regulator
ATM98_RS00325	COG2972	Histidine kinase
ATM98_RS00330	COG4470	Protein conserved in bacteria
ATM98_RS00335	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ATM98_RS00345	COG0133	tryptophan synthase activity
ATM98_RS00370	COG1187	pseudouridine synthase activity
ATM98_RS00375	COG1217	gtp-binding protein TYPA
ATM98_RS00395	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ATM98_RS00400	COG0849	cell division
ATM98_RS00405	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ATM98_RS00410	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ATM98_RS00415	COG1799	cell septum assembly
ATM98_RS00430	COG3599	regulation of cell shape
ATM98_RS00435	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ATM98_RS00445	COG0494	nUDIX hydrolase
ATM98_RS00450	COG0542	response to heat
ATM98_RS00455	COG4703	Protein of unknown function (DUF1797)
ATM98_RS00460	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
ATM98_RS00465	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ATM98_RS00470	COG1570	exodeoxyribonuclease VII activity
ATM98_RS00475	COG1722	exodeoxyribonuclease VII activity
ATM98_RS00485	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
ATM98_RS00490	COG1438	arginine binding
ATM98_RS00495	COG0497	DNA recombination
ATM98_RS00500	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ATM98_RS00505	COG1307	EDD domain protein, DegV family
ATM98_RS00520	COG0588	phosphoglycerate mutase activity
ATM98_RS00525	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ATM98_RS00525	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ATM98_RS00530	COG3655	Transcriptional regulator
ATM98_RS00550	COG0745	RESPONSE REGULATOR receiver
ATM98_RS00555	COG2205	protein histidine kinase activity
ATM98_RS00555	COG0784	Response regulator, receiver
ATM98_RS00560	COG1136	(ABC) transporter
ATM98_RS00565	COG0577	efflux transmembrane transporter activity
ATM98_RS00580	COG1136	(ABC) transporter
ATM98_RS00585	COG0577	efflux transmembrane transporter activity
ATM98_RS00590	COG4166	transmembrane transport
ATM98_RS00630	COG1028	Short-chain dehydrogenase reductase Sdr
ATM98_RS00770	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
ATM98_RS00775	COG0494	nUDIX hydrolase
ATM98_RS00785	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ATM98_RS00790	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ATM98_RS00805	COG0708	Exodeoxyribonuclease III
ATM98_RS00810	COG0768	penicillin binding
ATM98_RS00815	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ATM98_RS00825	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATM98_RS00830	COG1051	belongs to the nudix hydrolase family
ATM98_RS00850	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
ATM98_RS00870	COG0513	Belongs to the DEAD box helicase family
ATM98_RS00875	COG1349	DNA-binding transcription factor activity
ATM98_RS00890	COG3775	system Galactitol-specific IIC component
ATM98_RS00905	COG0698	ribose 5-phosphate isomerase
ATM98_RS00910	COG1105	Belongs to the carbohydrate kinase PfkB family
ATM98_RS00915	COG3684	Belongs to the aldolase LacD family
ATM98_RS00925	COG2827	Endonuclease containing a URI domain
ATM98_RS00930	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
ATM98_RS00935	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ATM98_RS00940	COG0204	Acyl-transferase
ATM98_RS00945	COG1555	photosystem II stabilization
ATM98_RS00945	COG1596	polysaccharide export
ATM98_RS00950	COG2333	competence protein COMEC
ATM98_RS00950	COG0658	competence protein
ATM98_RS00960	COG1466	dna polymerase III delta subunit
ATM98_RS00965	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ATM98_RS00970	COG0433	COG0433 Predicted ATPase
ATM98_RS00985	COG2235	arginine
ATM98_RS00990	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ATM98_RS00995	COG0549	Belongs to the carbamate kinase family
ATM98_RS01000	COG1288	antiporter activity
ATM98_RS01005	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ATM98_RS01010	COG1438	arginine binding
ATM98_RS01015	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
ATM98_RS01035	COG1686	Belongs to the peptidase S11 family
ATM98_RS01060	COG4122	O-methyltransferase activity
ATM98_RS01065	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ATM98_RS01075	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ATM98_RS01085	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATM98_RS01090	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ATM98_RS01095	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ATM98_RS01110	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
ATM98_RS01120	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
ATM98_RS01125	COG0297	glycogen (starch) synthase activity
ATM98_RS01130	COG3064	Membrane
ATM98_RS01140	COG0356	it plays a direct role in the translocation of protons across the membrane
ATM98_RS01145	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
ATM98_RS01150	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ATM98_RS01155	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
ATM98_RS01160	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
ATM98_RS01180	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ATM98_RS01205	COG0488	(ABC) transporter
ATM98_RS01235	COG3442	glutamine amidotransferase
ATM98_RS01240	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ATM98_RS01245	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
ATM98_RS01255	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATM98_RS01260	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
ATM98_RS01265	COG0251	oxidation-reduction process
ATM98_RS01270	COG1660	Displays ATPase and GTPase activities
ATM98_RS01275	COG0391	Required for morphogenesis under gluconeogenic growth conditions
ATM98_RS01280	COG1481	regulation of sporulation
ATM98_RS01285	COG0492	ferredoxin-NADP+ reductase activity
ATM98_RS01295	COG4106	trans-aconitate 2-methyltransferase activity
ATM98_RS01305	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ATM98_RS01310	COG1970	mechanosensitive ion channel activity
ATM98_RS01315	COG0358	DNA primase activity
ATM98_RS01320	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ATM98_RS01325	COG2151	metal-sulfur cluster biosynthetic enzyme
ATM98_RS01330	COG1131	(ABC) transporter
ATM98_RS01360	COG0469	pyruvate kinase activity
ATM98_RS01365	COG0681	Belongs to the peptidase S26 family
ATM98_RS01370	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ATM98_RS01375	COG0210	DNA helicase
ATM98_RS01395	COG0464	growth
ATM98_RS01400	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATM98_RS01415	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ATM98_RS01420	COG0196	riboflavin kinase activity
ATM98_RS01425	COG1393	Belongs to the ArsC family
ATM98_RS01435	COG0483	inositol monophosphate 1-phosphatase activity
ATM98_RS01440	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ATM98_RS01440	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
ATM98_RS01445	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ATM98_RS01450	COG0573	inorganic phosphate transmembrane transporter activity
ATM98_RS01455	COG0581	inorganic phosphate transmembrane transporter activity
ATM98_RS01460	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ATM98_RS01465	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ATM98_RS01480	COG1268	BioY protein
ATM98_RS01490	COG0745	RESPONSE REGULATOR receiver
ATM98_RS01495	COG5002	protein histidine kinase activity
ATM98_RS01505	COG0726	polysaccharide deacetylase
ATM98_RS01515	COG0673	inositol 2-dehydrogenase activity
ATM98_RS01535	COG1956	GAF domain-containing protein
ATM98_RS01540	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ATM98_RS01550	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
ATM98_RS01550	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
ATM98_RS01555	COG1609	Transcriptional regulator
ATM98_RS01570	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ATM98_RS01575	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ATM98_RS01595	COG1174	glycine betaine transport
ATM98_RS01600	COG3201	nicotinamide mononucleotide transporter
ATM98_RS01615	COG0604	alcohol dehydrogenase
ATM98_RS01615	COG3321	synthase
ATM98_RS01615	COG1028	Short-chain dehydrogenase reductase Sdr
ATM98_RS01620	COG0596	Alpha beta hydrolase
ATM98_RS01640	COG1230	cation diffusion facilitator family transporter
ATM98_RS01645	COG1136	(ABC) transporter
ATM98_RS01645	COG0577	efflux transmembrane transporter activity
ATM98_RS01655	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
ATM98_RS01665	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ATM98_RS01670	COG0569	domain protein
ATM98_RS01680	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
ATM98_RS01685	COG1074	ATP-dependent DNA helicase activity
ATM98_RS01700	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ATM98_RS01715	COG0300	oxidoreductase activity
ATM98_RS01720	COG2226	methyltransferase
ATM98_RS01730	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ATM98_RS01730	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
ATM98_RS01740	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ATM98_RS01745	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
ATM98_RS01755	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ATM98_RS01760	COG0625	glutathione transferase activity
ATM98_RS01765	COG2384	SAM-dependent methyltransferase
ATM98_RS01770	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ATM98_RS01775	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ATM98_RS01780	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
ATM98_RS01790	COG1088	dTDP-glucose 4,6-dehydratase activity
ATM98_RS01805	COG1104	cysteine desulfurase activity
ATM98_RS01825	COG0211	Belongs to the bacterial ribosomal protein bL27 family
ATM98_RS01830	COG0583	DNA-binding transcription factor activity
ATM98_RS01840	COG0564	pseudouridine synthase activity
ATM98_RS01850	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
ATM98_RS01855	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
ATM98_RS01860	COG0488	(ABC) transporter
ATM98_RS01865	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ATM98_RS01880	COG0647	UMP catabolic process
ATM98_RS01920	COG1573	uracil-dna glycosylase
ATM98_RS01925	COG3760	aminoacyl-tRNA metabolism involved in translational fidelity
ATM98_RS01930	COG0425	Belongs to the sulfur carrier protein TusA family
ATM98_RS01930	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATM98_RS01960	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
ATM98_RS01965	COG0716	FMN binding
ATM98_RS01975	COG0038	chloride channel
ATM98_RS01990	COG3513	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
ATM98_RS01995	COG1518	maintenance of DNA repeat elements
ATM98_RS02015	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
ATM98_RS02020	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ATM98_RS02025	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
ATM98_RS02035	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
ATM98_RS02045	COG0813	purine-nucleoside phosphorylase activity
ATM98_RS02060	COG0583	DNA-binding transcription factor activity
ATM98_RS02070	COG0543	2 iron, 2 sulfur cluster binding
ATM98_RS02075	COG0167	dihydroorotate dehydrogenase activity
ATM98_RS02080	COG0284	orotidine-5'-phosphate decarboxylase activity
ATM98_RS02105	COG1051	belongs to the nudix hydrolase family
ATM98_RS02110	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
ATM98_RS02130	COG0473	3-isopropylmalate dehydrogenase activity
ATM98_RS02145	COG0066	3-isopropylmalate dehydratase activity
ATM98_RS02155	COG2323	membrane
ATM98_RS02170	COG0187	DNA topoisomerase II activity
ATM98_RS02190	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
ATM98_RS02195	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ATM98_RS02215	COG0539	negative regulation of cytoplasmic translation
ATM98_RS02230	COG0039	L-malate dehydrogenase activity
ATM98_RS02235	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
ATM98_RS02240	COG3764	Sortase (surface protein transpeptidase)
ATM98_RS02250	COG2003	Belongs to the UPF0758 family
ATM98_RS02270	COG1104	cysteine desulfurase activity
ATM98_RS02275	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATM98_RS02285	COG2357	RelA SpoT domain protein
ATM98_RS02295	COG0564	pseudouridine synthase activity
ATM98_RS02300	COG0280	phosphate acetyltransferase
ATM98_RS02305	COG1194	a g-specific adenine glycosylase
ATM98_RS02315	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ATM98_RS02320	COG4684	Psort location CytoplasmicMembrane, score
ATM98_RS02325	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ATM98_RS02335	COG2759	Belongs to the formate--tetrahydrofolate ligase family
ATM98_RS02340	COG1247	-acetyltransferase
ATM98_RS02355	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
ATM98_RS02360	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATM98_RS02370	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
ATM98_RS02385	COG0758	DNA mediated transformation
ATM98_RS02390	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ATM98_RS02425	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ATM98_RS02430	COG0022	dehydrogenase e1 component
ATM98_RS02435	COG0508	dehydrogenase complex catalyzes the overall conversion of
ATM98_RS02440	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATM98_RS02445	COG0095	Lipoate-protein ligase
ATM98_RS02455	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ATM98_RS02470	COG3458	cephalosporin-C deacetylase activity
ATM98_RS02480	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ATM98_RS02495	COG2188	Transcriptional regulator
ATM98_RS02520	COG0741	lytic transglycosylase activity
ATM98_RS02540	COG2890	protein-(glutamine-N5) methyltransferase activity
ATM98_RS02545	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
ATM98_RS02555	COG1435	thymidine kinase activity
ATM98_RS02560	COG1942	4-Oxalocrotonate Tautomerase
ATM98_RS02565	COG0534	Mate efflux family protein
ATM98_RS02570	COG2233	PERMEase
ATM98_RS02590	COG0110	maltose O-acetyltransferase activity
ATM98_RS02595	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ATM98_RS02600	COG0805	protein transport
ATM98_RS02605	COG0672	)-iron permease
ATM98_RS02610	COG2837	iron assimilation
ATM98_RS02615	COG2822	iron ion transport
ATM98_RS02620	COG0038	chloride channel
ATM98_RS02640	COG3976	FMN-binding domain protein
ATM98_RS02640	COG1053	succinate dehydrogenase
ATM98_RS02640	COG0431	NADPH-dependent FMN reductase
ATM98_RS02645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATM98_RS02650	COG0785	Cytochrome C biogenesis protein
ATM98_RS02665	COG1132	(ABC) transporter
ATM98_RS02680	COG0222	ribosome binding
ATM98_RS02685	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ATM98_RS02695	COG1705	Flagellar rod assembly protein muramidase FlgJ
ATM98_RS02695	COG1388	LysM domain
ATM98_RS02700	COG0218	Necessary for normal cell division and for the maintenance of normal septation
ATM98_RS02710	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
ATM98_RS02725	COG1940	carbohydrate kinase activity
ATM98_RS02735	COG0488	(ABC) transporter
ATM98_RS02740	COG0617	tRNA 3'-terminal CCA addition
ATM98_RS02745	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ATM98_RS02750	COG1307	EDD domain protein, DegV family
ATM98_RS02760	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATM98_RS02760	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ATM98_RS02760	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
ATM98_RS02765	COG1105	Belongs to the carbohydrate kinase PfkB family
ATM98_RS02770	COG1349	DNA-binding transcription factor activity
ATM98_RS02800	COG1837	Belongs to the UPF0109 family
ATM98_RS02815	COG1011	Hydrolase
ATM98_RS02845	COG0561	phosphatase activity
ATM98_RS02850	COG2195	Cleaves the N-terminal amino acid of tripeptides
ATM98_RS02855	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ATM98_RS02860	COG0505	Belongs to the CarA family
ATM98_RS02865	COG0540	Belongs to the ATCase OTCase family
ATM98_RS02870	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
ATM98_RS02880	COG2824	Alkylphosphonate utilization operon protein PhnA
ATM98_RS02895	COG1051	belongs to the nudix hydrolase family
ATM98_RS02935	COG1131	(ABC) transporter
ATM98_RS02955	COG0765	amino acid transport
ATM98_RS02960	COG1126	abc transporter atp-binding protein
ATM98_RS02970	COG1132	(ABC) transporter
ATM98_RS02985	COG0017	Asparaginyl-tRNA synthetase
ATM98_RS02990	COG0436	Aminotransferase
ATM98_RS02995	COG1846	Transcriptional regulator
ATM98_RS03010	COG1272	protein, Hemolysin III
ATM98_RS03015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ATM98_RS03030	COG3142	Participates in the control of copper homeostasis
ATM98_RS03040	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
ATM98_RS03045	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
ATM98_RS03050	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ATM98_RS03085	COG1056	cytidyltransferase-related domain
ATM98_RS03085	COG1051	belongs to the nudix hydrolase family
ATM98_RS03160	COG0135	phosphoribosylanthranilate isomerase activity
ATM98_RS03170	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ATM98_RS03180	COG0077	Prephenate dehydratase
ATM98_RS03185	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ATM98_RS03190	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ATM98_RS03195	COG3679	Belongs to the UPF0342 family
ATM98_RS03200	COG0287	Prephenate dehydrogenase
ATM98_RS03205	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
ATM98_RS03215	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
ATM98_RS03220	COG0710	3-dehydroquinate dehydratase activity
ATM98_RS03225	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
ATM98_RS03230	COG1368	sulfuric ester hydrolase activity
ATM98_RS03235	COG1523	belongs to the glycosyl hydrolase 13 family
ATM98_RS03240	COG1597	lipid kinase activity
ATM98_RS03245	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ATM98_RS03250	COG4708	membrane
ATM98_RS03255	COG2246	polysaccharide biosynthetic process
ATM98_RS03265	COG1846	Transcriptional regulator
ATM98_RS03275	COG0024	Methionine aminopeptidase
ATM98_RS03280	COG4109	DRTGG domain
ATM98_RS03285	COG0519	Catalyzes the synthesis of GMP from XMP
ATM98_RS03290	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ATM98_RS03300	COG2217	Heavy metal translocating P-type atpase
ATM98_RS03305	COG3682	Transcriptional regulator
ATM98_RS03325	COG0765	amino acid transport
ATM98_RS03330	COG1126	abc transporter atp-binding protein
ATM98_RS03335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ATM98_RS03345	COG2131	deaminase
ATM98_RS03355	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ATM98_RS03365	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
ATM98_RS03385	COG1368	sulfuric ester hydrolase activity
ATM98_RS03405	COG1215	transferase activity, transferring glycosyl groups
ATM98_RS03425	COG1442	glycosyl transferase family 8
ATM98_RS03425	COG1216	Glycosyl transferase, family 2
ATM98_RS03445	COG0463	Glycosyl transferase, family 2
ATM98_RS03450	COG1216	Glycosyl transferase, family 2
ATM98_RS03455	COG1216	Glycosyl transferase, family 2
ATM98_RS03470	COG1091	dTDP-4-dehydrorhamnose reductase activity
ATM98_RS03485	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ATM98_RS03495	COG1177	transmembrane transport
ATM98_RS03500	COG1175	transmembrane transport
ATM98_RS03505	COG3842	ATPase activity
ATM98_RS03510	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ATM98_RS03525	COG0460	homoserine dehydrogenase
ATM98_RS03530	COG0726	polysaccharide deacetylase
ATM98_RS03535	COG1079	Belongs to the binding-protein-dependent transport system permease family
ATM98_RS03540	COG4603	Belongs to the binding-protein-dependent transport system permease family
ATM98_RS03545	COG3845	ABC transporter
ATM98_RS03550	COG1744	ABC transporter substrate-binding protein PnrA-like
ATM98_RS03560	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
ATM98_RS03570	COG2813	Specifically methylates the guanine in position
ATM98_RS03575	COG1072	(Pantothenic acid kinase))
ATM98_RS03580	COG0268	Binds directly to 16S ribosomal RNA
ATM98_RS03585	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ATM98_RS03605	COG1131	(ABC) transporter
ATM98_RS03620	COG3118	belongs to the thioredoxin family
ATM98_RS03630	COG4166	transmembrane transport
ATM98_RS03635	COG0159	tryptophan synthase activity
ATM98_RS03645	COG0135	phosphoribosylanthranilate isomerase activity
ATM98_RS03660	COG0512	Glutamine amidotransferase of anthranilate synthase
ATM98_RS03665	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATM98_RS03670	COG1363	Peptidase, m42
ATM98_RS03690	COG2514	catechol 2,3-dioxygenase activity
ATM98_RS03715	COG1132	(ABC) transporter
ATM98_RS03720	COG1132	(ABC) transporter
ATM98_RS03745	COG4989	oxidoreductase activity
ATM98_RS03750	COG1668	transmembrane transport
ATM98_RS03755	COG4152	abc transporter atp-binding protein
ATM98_RS03765	COG1476	TRANSCRIPTIONal
ATM98_RS03775	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ATM98_RS03775	COG0072	phenylalanine-tRNA ligase activity
ATM98_RS03800	COG1293	RNA-binding protein homologous to eukaryotic snRNP
ATM98_RS03805	COG3527	Alpha-acetolactate decarboxylase
ATM98_RS03815	COG0628	permease
ATM98_RS03820	COG2706	6-phosphogluconolactonase activity
ATM98_RS03845	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
ATM98_RS03850	COG0187	DNA topoisomerase II activity
ATM98_RS03865	COG0772	Belongs to the SEDS family
ATM98_RS03875	COG1199	ATP-dependent helicase activity
ATM98_RS03875	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ATM98_RS03885	COG2177	Part of the ABC transporter FtsEX involved in
ATM98_RS03890	COG2884	Cell division ATP-binding protein ftsE
ATM98_RS03895	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ATM98_RS03905	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
ATM98_RS03920	COG1078	dGTPase activity
ATM98_RS03945	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ATM98_RS03950	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
ATM98_RS03955	COG0772	Belongs to the SEDS family
ATM98_RS03965	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ATM98_RS03975	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
ATM98_RS03980	COG0577	efflux transmembrane transporter activity
ATM98_RS03985	COG1136	(ABC) transporter
ATM98_RS03990	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATM98_RS03995	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ATM98_RS04000	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
ATM98_RS04005	COG4443	Transcriptional Coactivator p15 (PC4)
ATM98_RS04015	COG0826	peptidase U32
ATM98_RS04040	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ATM98_RS04045	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
ATM98_RS04055	COG3091	SprT-like family
ATM98_RS04060	COG2183	response to ionizing radiation
ATM98_RS04065	COG0701	Predicted permease
ATM98_RS04070	COG3689	TIGRFAM TIGR03943 family protein
ATM98_RS04075	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
ATM98_RS04080	COG0552	protein localization to endoplasmic reticulum
ATM98_RS04085	COG0561	phosphatase activity
ATM98_RS04090	COG0561	phosphatase activity
ATM98_RS04095	COG1196	nuclear chromosome segregation
ATM98_RS04100	COG0571	ribonuclease III activity
ATM98_RS04110	COG2832	Protein of unknown function (DUF454)
ATM98_RS04115	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
ATM98_RS04125	COG0745	RESPONSE REGULATOR receiver
ATM98_RS04130	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
ATM98_RS04135	COG0438	transferase activity, transferring glycosyl groups
ATM98_RS04145	COG1609	Transcriptional regulator
ATM98_RS04150	COG0006	proline dipeptidase activity
ATM98_RS04160	COG1959	2 iron, 2 sulfur cluster binding
ATM98_RS04195	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ATM98_RS04195	COG0425	Belongs to the sulfur carrier protein TusA family
ATM98_RS04200	COG1937	Protein conserved in bacteria
ATM98_RS04225	COG1346	cytolysis
ATM98_RS04230	COG1380	Effector of murein hydrolase LrgA
ATM98_RS04245	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ATM98_RS04250	COG0557	exoribonuclease II activity
ATM98_RS04260	COG2814	Major facilitator Superfamily
ATM98_RS04265	COG0237	dephospho-CoA kinase activity
ATM98_RS04270	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
ATM98_RS04275	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ATM98_RS04280	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
ATM98_RS04290	COG1132	(ABC) transporter
ATM98_RS04295	COG1132	(ABC) transporter
ATM98_RS04310	COG0686	Belongs to the AlaDH PNT family
ATM98_RS04315	COG1702	phosphate starvation-inducible protein PhoH
ATM98_RS04335	COG0528	UMP kinase activity
ATM98_RS04340	COG0081	regulation of translation
ATM98_RS04345	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
ATM98_RS04355	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ATM98_RS04360	COG0346	lactoylglutathione lyase activity
ATM98_RS04365	COG1674	ftsk spoiiie
ATM98_RS04365	COG0697	spore germination
ATM98_RS04385	COG0488	(ABC) transporter
ATM98_RS04390	COG1393	Belongs to the ArsC family
ATM98_RS04395	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ATM98_RS04410	COG4467	Involved in initiation control of chromosome replication
ATM98_RS04415	COG0470	DNA polymerase III
ATM98_RS04420	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
ATM98_RS04425	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ATM98_RS04430	COG0517	IMP dehydrogenase activity
ATM98_RS04470	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
ATM98_RS04475	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ATM98_RS04480	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
ATM98_RS04485	COG0626	cystathionine gamma-synthase activity
ATM98_RS04490	COG2244	polysaccharide biosynthetic process
ATM98_RS04495	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ATM98_RS04515	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
ATM98_RS04525	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ATM98_RS04530	COG4120	Belongs to the binding-protein-dependent transport system permease family
ATM98_RS04545	COG1253	flavin adenine dinucleotide binding
ATM98_RS04550	COG3711	transcriptional antiterminator
ATM98_RS04555	COG0628	permease
ATM98_RS04560	COG1119	ATPase activity
ATM98_RS04565	COG0025	NhaP-type Na H and K H
ATM98_RS04575	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
ATM98_RS04580	COG1242	4 iron, 4 sulfur cluster binding
ATM98_RS04590	COG0671	phosphoesterase, PA-phosphatase related
ATM98_RS04595	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
ATM98_RS04605	COG0569	domain protein
ATM98_RS04610	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ATM98_RS04620	COG1187	pseudouridine synthase activity
ATM98_RS04625	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ATM98_RS04630	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ATM98_RS04635	COG4974	Belongs to the 'phage' integrase family
ATM98_RS04640	COG0517	IMP dehydrogenase activity
ATM98_RS04650	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ATM98_RS04655	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ATM98_RS04680	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ATM98_RS04685	COG1254	Belongs to the acylphosphatase family
ATM98_RS04700	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ATM98_RS04725	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
ATM98_RS04745	COG1484	DNA-dependent DNA replication
ATM98_RS04755	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ATM98_RS04765	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ATM98_RS04765	COG2190	(PTS) system
ATM98_RS04765	COG1263	PTS System
ATM98_RS04770	COG0745	RESPONSE REGULATOR receiver
ATM98_RS04775	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
ATM98_RS04800	COG0501	Belongs to the peptidase M48B family
ATM98_RS04805	COG1704	LemA family
ATM98_RS04820	COG4221	oxidoreductase activity
ATM98_RS04830	COG1122	ATPase activity
ATM98_RS04890	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ATM98_RS04905	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ATM98_RS04910	COG1473	amidohydrolase
ATM98_RS04915	COG0217	transcriptional regulatory protein
ATM98_RS04935	COG2226	methyltransferase
ATM98_RS04940	COG0799	negative regulation of ribosome biogenesis
ATM98_RS04945	COG1335	isochorismatase
ATM98_RS04950	COG1713	HD superfamily hydrolase involved in NAD metabolism
ATM98_RS04955	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
ATM98_RS04960	COG1534	Rna-binding protein
ATM98_RS04965	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
ATM98_RS04970	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
ATM98_RS04985	COG1063	alcohol dehydrogenase
ATM98_RS05010	COG1335	isochorismatase
ATM98_RS05015	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
ATM98_RS05020	COG0436	Aminotransferase
ATM98_RS05025	COG0589	response to stress
ATM98_RS05030	COG0561	phosphatase activity
ATM98_RS05035	COG0252	asparaginase activity
ATM98_RS05040	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ATM98_RS05050	COG0736	holo-[acyl-carrier-protein] synthase activity
ATM98_RS05055	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ATM98_RS05060	COG0653	protein targeting
ATM98_RS05065	COG0531	amino acid
ATM98_RS05070	COG0789	Transcriptional regulator
ATM98_RS05075	COG1482	cell wall glycoprotein biosynthetic process
ATM98_RS05080	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ATM98_RS05090	COG0242	peptide deformylase activity
ATM98_RS05095	COG1940	carbohydrate kinase activity
ATM98_RS05100	COG2190	(PTS) system
ATM98_RS05100	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ATM98_RS05100	COG1263	PTS System
ATM98_RS05105	COG1621	beta-fructofuranosidase activity
ATM98_RS05110	COG1609	Transcriptional regulator
ATM98_RS05130	COG0006	proline dipeptidase activity
ATM98_RS05135	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ATM98_RS05155	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
ATM98_RS05160	COG0629	single-stranded DNA binding
ATM98_RS05165	COG0360	Binds together with S18 to 16S ribosomal RNA
ATM98_RS05185	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
ATM98_RS05200	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
ATM98_RS05205	COG0366	Alpha amylase catalytic
ATM98_RS05215	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
ATM98_RS05235	COG2205	protein histidine kinase activity
ATM98_RS05240	COG0745	RESPONSE REGULATOR receiver
ATM98_RS05250	COG2723	6-phospho-beta-galactosidase activity
ATM98_RS05260	COG0028	Belongs to the TPP enzyme family
ATM98_RS05270	COG0561	phosphatase activity
ATM98_RS05275	COG1917	Cupin 2, conserved barrel domain protein
ATM98_RS05275	COG4977	sequence-specific DNA binding
ATM98_RS05280	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ATM98_RS05285	COG2843	Capsule synthesis protein
ATM98_RS05295	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ATM98_RS05295	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ATM98_RS05305	COG0167	dihydroorotate dehydrogenase activity
ATM98_RS05310	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ATM98_RS05315	COG0484	heat shock protein binding
ATM98_RS05330	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
ATM98_RS05340	COG1876	peptidase activity
ATM98_RS05345	COG0588	phosphoglycerate mutase activity
ATM98_RS05350	COG0588	phosphoglycerate mutase activity
ATM98_RS05360	COG3830	Belongs to the UPF0237 family
ATM98_RS05380	COG3237	CsbD-like
ATM98_RS05390	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ATM98_RS05415	COG2217	Heavy metal translocating P-type atpase
ATM98_RS05425	COG3328	transposase activity
ATM98_RS05440	COG0270	DNA (cytosine-5-)-methyltransferase activity
ATM98_RS05455	COG0270	DNA (cytosine-5-)-methyltransferase activity
ATM98_RS05460	COG3620	sequence-specific DNA binding
ATM98_RS05510	COG1674	ftsk spoiiie
ATM98_RS05535	COG1131	(ABC) transporter
ATM98_RS05605	COG0433	COG0433 Predicted ATPase
ATM98_RS05620	COG3942	CHAP domain
ATM98_RS05620	COG1705	Flagellar rod assembly protein muramidase FlgJ
ATM98_RS05645	COG1309	transcriptional regulator
ATM98_RS05650	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ATM98_RS05655	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
ATM98_RS05665	COG3688	RNA-binding protein containing a PIN domain
ATM98_RS05685	COG0366	Alpha amylase catalytic
ATM98_RS05690	COG3842	ATPase activity
ATM98_RS05700	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
ATM98_RS05705	COG0215	cysteine-tRNA ligase activity
ATM98_RS05715	COG1045	serine acetyltransferase
ATM98_RS05730	COG1164	Oligoendopeptidase f
ATM98_RS05750	COG1131	(ABC) transporter
ATM98_RS05760	COG3118	belongs to the thioredoxin family
ATM98_RS05770	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ATM98_RS05775	COG1187	pseudouridine synthase activity
ATM98_RS05785	COG0668	transmembrane transport
ATM98_RS05790	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
ATM98_RS05795	COG1115	amino acid carrier protein
ATM98_RS05805	COG1193	negative regulation of DNA recombination
ATM98_RS05820	COG0386	Belongs to the glutathione peroxidase family
ATM98_RS05830	COG0681	Belongs to the peptidase S26 family
ATM98_RS05835	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ATM98_RS05840	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ATM98_RS05845	COG1882	Formate acetyltransferase
ATM98_RS05865	COG3425	synthase
ATM98_RS05890	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
ATM98_RS05895	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ATM98_RS05920	COG2176	DNA-directed DNA polymerase activity
ATM98_RS05940	COG2081	HI0933 family
ATM98_RS05945	COG0733	neurotransmitter:sodium symporter activity
ATM98_RS05965	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
ATM98_RS05975	COG1214	PFAM Peptidase M22, glycoprotease
ATM98_RS05980	COG5503	Protein of unknown function (DUF1447)
ATM98_RS05990	COG0174	glutamine synthetase
ATM98_RS05995	COG0789	Transcriptional regulator
ATM98_RS06005	COG0126	phosphoglycerate kinase activity
ATM98_RS06010	COG0366	Alpha amylase catalytic
ATM98_RS06040	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ATM98_RS06045	COG3481	metal-dependent phosphohydrolase, HD sub domain
ATM98_RS06055	COG1564	THIamine pyrophosphokinase
ATM98_RS06065	COG1162	GTPase activity
ATM98_RS06095	COG0084	hydrolase, TatD family'
ATM98_RS06100	COG0230	Belongs to the bacterial ribosomal protein bL34 family
ATM98_RS06110	COG1847	R3H domain protein
ATM98_RS06115	COG0706	membrane insertase activity
ATM98_RS06120	COG0594	ribonuclease P activity
ATM98_RS06155	COG1129	ABC transporter
ATM98_RS06175	COG0463	Glycosyl transferase, family 2
ATM98_RS06205	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
ATM98_RS06225	COG0756	dUTP diphosphatase activity
ATM98_RS06230	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
ATM98_RS06235	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
ATM98_RS06240	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ATM98_RS06255	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ATM98_RS06295	COG0166	Belongs to the GPI family
ATM98_RS06310	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ATM98_RS06315	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ATM98_RS06320	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ATM98_RS06330	COG3201	nicotinamide mononucleotide transporter
ATM98_RS06335	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
ATM98_RS06360	COG4463	regulation of RNA biosynthetic process
ATM98_RS06370	COG3250	beta-galactosidase activity
ATM98_RS06380	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
ATM98_RS06410	COG2321	neutral zinc metallopeptidase
ATM98_RS06415	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATM98_RS06420	COG0564	pseudouridine synthase activity
ATM98_RS06430	COG0803	Belongs to the bacterial solute-binding protein 9 family
ATM98_RS06440	COG0438	transferase activity, transferring glycosyl groups
ATM98_RS06445	COG0562	UDP-galactopyranose mutase
ATM98_RS06465	COG1442	glycosyl transferase family 8
ATM98_RS06465	COG1216	Glycosyl transferase, family 2
ATM98_RS06490	COG0489	protein tyrosine kinase activity
ATM98_RS06495	COG3944	biosynthesis protein
ATM98_RS06500	COG4464	protein tyrosine phosphatase activity
ATM98_RS06505	COG1316	TRANSCRIPTIONal
ATM98_RS06515	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ATM98_RS06525	COG0285	dihydrofolate synthase activity
ATM98_RS06530	COG3906	Belongs to the UPF0473 family
ATM98_RS06535	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ATM98_RS06540	COG4472	Bacterial protein of unknown function (DUF965)
ATM98_RS06560	COG1393	Belongs to the ArsC family
ATM98_RS06570	COG1058	Belongs to the CinA family
ATM98_RS06570	COG1546	Belongs to the CinA family
ATM98_RS06580	COG0519	Catalyzes the synthesis of GMP from XMP
ATM98_RS06590	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ATM98_RS06605	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ATM98_RS06610	COG1438	arginine binding
ATM98_RS06615	COG0018	arginyl-trna synthetase
ATM98_RS06625	COG1780	Probably involved in ribonucleotide reductase function
ATM98_RS06635	COG0058	SHG alpha-glucan phosphorylase activity
ATM98_RS06640	COG1640	4-alpha-glucanotransferase
ATM98_RS06645	COG2182	Extracellular solute-binding protein
ATM98_RS06650	COG1175	transmembrane transport
ATM98_RS06655	COG3833	ABC-type maltose transport systems, permease component
ATM98_RS06660	COG5521	maltodextrose utilization protein MalA
ATM98_RS06665	COG1609	Transcriptional regulator
ATM98_RS06670	COG1523	belongs to the glycosyl hydrolase 13 family
ATM98_RS06675	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
ATM98_RS06690	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
ATM98_RS06695	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ATM98_RS06700	COG1696	Membrane protein involved in D-alanine export
ATM98_RS06740	COG1511	domain protein
ATM98_RS06750	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ATM98_RS06755	COG2274	protein secretion by the type I secretion system
ATM98_RS06760	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
ATM98_RS06770	COG0305	Participates in initiation and elongation during chromosome replication
ATM98_RS06775	COG0359	binds to the 23S rRNA
ATM98_RS06785	COG0445	tRNA wobble uridine modification
ATM98_RS06810	COG1760	l-serine dehydratase
ATM98_RS06815	COG1760	l-serine dehydratase
ATM98_RS06820	COG0546	phosphoglycolate phosphatase activity
ATM98_RS06825	COG0741	lytic transglycosylase activity
ATM98_RS06830	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
ATM98_RS06835	COG1122	ATPase activity
ATM98_RS06840	COG1122	ATPase activity
ATM98_RS06845	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ATM98_RS06850	COG0612	Peptidase, M16
ATM98_RS06860	COG2501	S4 domain
ATM98_RS06865	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
ATM98_RS06870	COG0517	IMP dehydrogenase activity
ATM98_RS06870	COG0516	GMP reductase activity
ATM98_RS06880	COG0488	(ABC) transporter
ATM98_RS06905	COG3290	protein histidine kinase activity
ATM98_RS06915	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
ATM98_RS06920	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ATM98_RS06925	COG1475	DNA binding
ATM98_RS06935	COG0592	DNA-directed DNA polymerase activity
ATM98_RS06950	COG0012	GTP binding
ATM98_RS06955	COG0193	aminoacyl-tRNA hydrolase activity
ATM98_RS06960	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ATM98_RS06965	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ATM98_RS06980	COG0037	tRNA processing
ATM98_RS06985	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
ATM98_RS06990	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ATM98_RS07115	COG3942	CHAP domain
ATM98_RS07120	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ATM98_RS07140	COG0436	Aminotransferase
ATM98_RS07145	COG1381	Involved in DNA repair and RecF pathway recombination
ATM98_RS07155	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ATM98_RS07165	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ATM98_RS07180	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ATM98_RS07185	COG0138	bifunctional purine biosynthesis protein purh
ATM98_RS07190	COG3942	CHAP domain
ATM98_RS07195	COG0151	Belongs to the GarS family
ATM98_RS07200	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
ATM98_RS07220	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ATM98_RS07225	COG2188	Transcriptional regulator
ATM98_RS07235	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
ATM98_RS07240	COG3715	PTS system
ATM98_RS07245	COG3716	PTS system mannose fructose sorbose family IID component
ATM98_RS07255	COG2222	sugar isomerase
ATM98_RS07270	COG2255	four-way junction helicase activity
ATM98_RS07280	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ATM98_RS07290	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
ATM98_RS07290	COG2755	lipolytic protein G-D-S-L family
ATM98_RS07295	COG1012	belongs to the aldehyde dehydrogenase family
ATM98_RS07295	COG1454	alcohol dehydrogenase
ATM98_RS07300	COG1063	alcohol dehydrogenase
ATM98_RS07320	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
ATM98_RS07330	COG1175	transmembrane transport
ATM98_RS07335	COG0395	ABC-type sugar transport system, permease component
ATM98_RS07340	COG2731	YhcH YjgK YiaL family protein
ATM98_RS07350	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ATM98_RS07370	COG1269	ATP hydrolysis coupled proton transport
ATM98_RS07375	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ATM98_RS07385	COG1527	subunit (C
ATM98_RS07400	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
ATM98_RS07405	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
ATM98_RS07410	COG1394	ATPase activity, coupled to movement of substances
ATM98_RS07420	COG2807	transmembrane transport
ATM98_RS07425	COG2151	metal-sulfur cluster biosynthetic enzyme
ATM98_RS07450	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ATM98_RS07470	COG0640	Transcriptional regulator
ATM98_RS07475	COG1388	LysM domain
ATM98_RS07475	COG4932	domain protein
ATM98_RS07500	COG1328	CTP reductase activity
ATM98_RS07510	COG0602	queuosine metabolic process
ATM98_RS07520	COG0534	Mate efflux family protein
ATM98_RS07525	COG0546	phosphoglycolate phosphatase activity
ATM98_RS07530	COG1846	Transcriptional regulator
ATM98_RS07535	COG3759	membrane
ATM98_RS07540	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATM98_RS07540	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
ATM98_RS07545	COG1832	CoA-binding protein
ATM98_RS07570	COG0088	Forms part of the polypeptide exit tunnel
ATM98_RS07580	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
ATM98_RS07585	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ATM98_RS07595	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
ATM98_RS07605	COG0255	Belongs to the universal ribosomal protein uL29 family
ATM98_RS07610	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ATM98_RS07615	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
ATM98_RS07620	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ATM98_RS07625	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
ATM98_RS07630	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ATM98_RS07650	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ATM98_RS07655	COG1841	ribosomal large subunit assembly
ATM98_RS07665	COG0201	protein transport
ATM98_RS07675	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ATM98_RS07680	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ATM98_RS07685	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
ATM98_RS07690	COG0202	RNA polymerase activity
ATM98_RS07785	COG0582	viral genome integration into host DNA
ATM98_RS07830	COG1846	Transcriptional regulator
ATM98_RS07835	COG1121	(ABC) transporter
ATM98_RS07840	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ATM98_RS07845	COG3443	Belongs to the bacterial solute-binding protein 9 family
ATM98_RS07845	COG0803	Belongs to the bacterial solute-binding protein 9 family
ATM98_RS07865	COG0383	alpha-mannosidase activity
ATM98_RS07880	COG4209	transmembrane transport
ATM98_RS07885	COG0395	ABC-type sugar transport system, permease component
ATM98_RS07890	COG1653	transport
ATM98_RS07900	COG2972	Histidine kinase
ATM98_RS07905	COG4753	response regulator
ATM98_RS07905	COG2207	Transcriptional regulator
ATM98_RS07910	COG2226	methyltransferase
ATM98_RS07920	COG4499	WXG100 protein secretion system (Wss), protein YukC
ATM98_RS07920	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATM98_RS07925	COG0085	RNA polymerase activity
ATM98_RS07930	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ATM98_RS07940	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ATM98_RS07945	COG1459	type II secretion system
ATM98_RS07950	COG4537	Required for transformation and DNA binding
ATM98_RS07980	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ATM98_RS07985	COG1266	CAAX protease self-immunity
ATM98_RS07990	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ATM98_RS07995	COG0285	dihydrofolate synthase activity
ATM98_RS08000	COG0302	gtp cyclohydrolase
ATM98_RS08005	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ATM98_RS08005	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ATM98_RS08010	COG4868	Belongs to the UPF0371 family
ATM98_RS08015	COG1363	Peptidase, m42
ATM98_RS08025	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ATM98_RS08030	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ATM98_RS08040	COG1609	Transcriptional regulator
ATM98_RS08045	COG4585	Histidine kinase
ATM98_RS08050	COG2197	response regulator
ATM98_RS08075	COG3716	PTS system mannose fructose sorbose family IID component
ATM98_RS08100	COG1136	(ABC) transporter
ATM98_RS08110	COG0745	RESPONSE REGULATOR receiver
ATM98_RS08115	COG5002	protein histidine kinase activity
ATM98_RS08120	COG2746	aminoglycoside 3-N-acetyltransferase activity
ATM98_RS08125	COG1136	(ABC) transporter
ATM98_RS08130	COG0577	efflux transmembrane transporter activity
ATM98_RS08140	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ATM98_RS08160	COG1051	belongs to the nudix hydrolase family
ATM98_RS08170	COG2264	protein methyltransferase activity
ATM98_RS08175	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ATM98_RS08185	COG1490	D-aminoacyl-tRNA deacylase activity
ATM98_RS08220	COG3590	peptidase
ATM98_RS08230	COG1349	DNA-binding transcription factor activity
ATM98_RS08235	COG2390	Transcriptional regulator
ATM98_RS08240	COG1447	Phosphotransferase system cellobiose-specific component IIA
ATM98_RS08250	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
ATM98_RS08255	COG1882	Formate acetyltransferase
ATM98_RS08280	COG4166	transmembrane transport
ATM98_RS08290	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
ATM98_RS08295	COG2723	6-phospho-beta-galactosidase activity
ATM98_RS08315	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ATM98_RS08320	COG0561	phosphatase activity
ATM98_RS08340	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ATM98_RS08345	COG4589	Belongs to the CDS family
ATM98_RS08360	COG2176	DNA-directed DNA polymerase activity
ATM98_RS08370	COG2309	aminopeptidase activity
ATM98_RS08375	COG3583	domain protein
ATM98_RS08375	COG3525	Glycosyl hydrolase, family 20, catalytic domain
ATM98_RS08375	COG3064	Membrane
ATM98_RS08385	COG0351	phosphomethylpyrimidine kinase
ATM98_RS08390	COG4720	Psort location CytoplasmicMembrane, score
ATM98_RS08395	COG4475	Protein of unknown function (DUF436)
ATM98_RS08400	COG0544	peptidyl-prolyl cis-trans isomerase activity
ATM98_RS08405	COG3343	RNA polymerase activity
ATM98_RS08420	COG0191	fructose-bisphosphate aldolase activity
ATM98_RS08425	COG1349	DNA-binding transcription factor activity
ATM98_RS08435	COG0698	ribose 5-phosphate isomerase
ATM98_RS08445	COG3684	Belongs to the aldolase LacD family
ATM98_RS08450	COG3711	transcriptional antiterminator
ATM98_RS08470	COG4555	ABC transporter
ATM98_RS08510	COG0542	response to heat
ATM98_RS08520	COG0210	DNA helicase
ATM98_RS08525	COG0561	phosphatase activity
ATM98_RS08570	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ATM98_RS08600	COG1131	(ABC) transporter
ATM98_RS08605	COG0842	Transport permease protein
ATM98_RS08610	COG4585	Histidine kinase
ATM98_RS08615	COG2197	response regulator
ATM98_RS08620	COG0028	Belongs to the TPP enzyme family
ATM98_RS08625	COG0440	acetolactate synthase activity
ATM98_RS08630	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
ATM98_RS08635	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ATM98_RS08650	COG1126	abc transporter atp-binding protein
ATM98_RS08655	COG0765	amino acid transport
ATM98_RS08665	COG1968	undecaprenyl-diphosphatase activity
ATM98_RS08670	COG4862	establishment of competence for transformation
ATM98_RS08675	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATM98_RS08685	COG0719	Fe-S assembly protein
ATM98_RS08690	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ATM98_RS08700	COG0719	Fe-S assembly protein
ATM98_RS08710	COG1686	Belongs to the peptidase S11 family
ATM98_RS08715	COG4166	transmembrane transport
ATM98_RS08720	COG4166	transmembrane transport
ATM98_RS08725	COG0601	transmembrane transport
ATM98_RS08730	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ATM98_RS08735	COG0444	Belongs to the ABC transporter superfamily
ATM98_RS08740	COG4608	Belongs to the ABC transporter superfamily
ATM98_RS08770	COG0527	aspartate kinase activity
ATM98_RS08775	COG1024	Enoyl-CoA hydratase
ATM98_RS08800	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ATM98_RS08805	COG1028	Short-chain dehydrogenase reductase Sdr
ATM98_RS08810	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ATM98_RS08825	COG0439	Biotin carboxylase
ATM98_RS08830	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
ATM98_RS08835	COG0825	malonyl-CoA metabolic process
ATM98_RS08850	COG3716	PTS system mannose fructose sorbose family IID component
ATM98_RS08855	COG3715	PTS system
ATM98_RS08865	COG1064	alcohol dehydrogenase
ATM98_RS08870	COG0561	phosphatase activity
ATM98_RS08875	COG2252	PERMEase
ATM98_RS08880	COG0802	atpase or kinase
ATM98_RS08890	COG1316	TRANSCRIPTIONal
ATM98_RS08900	COG0537	adenosine 5'-monophosphoramidase activity
ATM98_RS08905	COG1131	(ABC) transporter
ATM98_RS08920	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ATM98_RS08925	COG0779	Required for maturation of 30S ribosomal subunits
ATM98_RS08930	COG0195	Participates in both transcription termination and antitermination
ATM98_RS08935	COG2740	Nucleic-acid-binding protein implicated in transcription termination
ATM98_RS08950	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
ATM98_RS08955	COG1283	sodium-dependent phosphate transmembrane transporter activity
ATM98_RS08970	COG0656	L-ascorbic acid biosynthetic process
ATM98_RS09015	COG0768	penicillin binding
ATM98_RS09020	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ATM98_RS09025	COG0513	Belongs to the DEAD box helicase family
ATM98_RS09030	COG0765	amino acid transport
ATM98_RS09035	COG1126	abc transporter atp-binding protein
ATM98_RS09045	COG0492	ferredoxin-NADP+ reductase activity
ATM98_RS09050	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
ATM98_RS09065	COG3579	cysteine-type endopeptidase activity
ATM98_RS09070	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ATM98_RS09075	COG3331	DNA recombination
ATM98_RS09080	COG4474	Belongs to the UPF0398 family