locus-tag	class	description
J5M87_RS00010	COG0592	DNA-directed DNA polymerase activity
J5M87_RS00030	COG0012	GTP binding
J5M87_RS00035	COG0193	aminoacyl-tRNA hydrolase activity
J5M87_RS00040	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J5M87_RS00045	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J5M87_RS00060	COG0037	tRNA processing
J5M87_RS00070	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J5M87_RS00190	COG3942	CHAP domain
J5M87_RS00205	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J5M87_RS00210	COG0436	Aminotransferase
J5M87_RS00215	COG1381	Involved in DNA repair and RecF pathway recombination
J5M87_RS00220	COG0416	fatty acid biosynthetic process
J5M87_RS00225	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J5M87_RS00230	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J5M87_RS00235	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J5M87_RS00245	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J5M87_RS00250	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J5M87_RS00275	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J5M87_RS00295	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J5M87_RS00300	COG2255	four-way junction helicase activity
J5M87_RS00305	COG0546	phosphoglycolate phosphatase activity
J5M87_RS00315	COG0051	transcription antitermination factor activity, RNA binding
J5M87_RS00320	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J5M87_RS00325	COG0088	Forms part of the polypeptide exit tunnel
J5M87_RS00330	COG0089	rRNA binding
J5M87_RS00335	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J5M87_RS00340	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J5M87_RS00345	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J5M87_RS00350	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J5M87_RS00360	COG0255	Belongs to the universal ribosomal protein uL29 family
J5M87_RS00365	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J5M87_RS00370	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
J5M87_RS00375	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J5M87_RS00380	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J5M87_RS00385	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J5M87_RS00390	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J5M87_RS00395	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
J5M87_RS00400	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J5M87_RS00405	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J5M87_RS00415	COG0200	Binds to the 23S rRNA
J5M87_RS00420	COG0201	protein transport
J5M87_RS00425	COG0563	adenylate kinase activity
J5M87_RS00430	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J5M87_RS00435	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J5M87_RS00440	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J5M87_RS00450	COG0202	RNA polymerase activity
J5M87_RS00555	COG1121	(ABC) transporter
J5M87_RS00560	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J5M87_RS00565	COG0803	Belongs to the bacterial solute-binding protein 9 family
J5M87_RS00565	COG3443	Belongs to the bacterial solute-binding protein 9 family
J5M87_RS00595	COG0085	RNA polymerase activity
J5M87_RS00600	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J5M87_RS00610	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J5M87_RS00615	COG1459	type II secretion system
J5M87_RS00620	COG4537	Required for transformation and DNA binding
J5M87_RS00720	COG3645	SOS response
J5M87_RS00725	COG0582	viral genome integration into host DNA
J5M87_RS00755	COG0285	dihydrofolate synthase activity
J5M87_RS00760	COG1363	Peptidase, m42
J5M87_RS00770	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5M87_RS00775	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5M87_RS00790	COG0459	protein refolding
J5M87_RS00805	COG0049	tRNA binding
J5M87_RS00810	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J5M87_RS00825	COG0126	phosphoglycerate kinase activity
J5M87_RS00835	COG0789	Transcriptional regulator
J5M87_RS00840	COG0174	glutamine synthetase
J5M87_RS00865	COG5503	Protein of unknown function (DUF1447)
J5M87_RS00870	COG1214	PFAM Peptidase M22, glycoprotease
J5M87_RS00880	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J5M87_RS00900	COG1131	(ABC) transporter
J5M87_RS00905	COG2081	HI0933 family
J5M87_RS00915	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS00930	COG3959	Transketolase, thiamine diphosphate binding domain
J5M87_RS00935	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J5M87_RS00940	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J5M87_RS00960	COG1115	amino acid carrier protein
J5M87_RS00965	COG0668	transmembrane transport
J5M87_RS00980	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
J5M87_RS00985	COG1132	(ABC) transporter
J5M87_RS01005	COG0167	dihydroorotate dehydrogenase activity
J5M87_RS01015	COG0561	phosphatase activity
J5M87_RS01040	COG4555	ABC transporter
J5M87_RS01050	COG1511	domain protein
J5M87_RS01050	COG1511	domain protein
J5M87_RS01055	COG1619	proteins homologs of microcin C7 resistance protein MccF
J5M87_RS01070	COG1696	Membrane protein involved in D-alanine export
J5M87_RS01080	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
J5M87_RS01115	COG1694	Mazg nucleotide pyrophosphohydrolase
J5M87_RS01125	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J5M87_RS01130	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J5M87_RS01135	COG0124	histidyl-tRNA synthetase
J5M87_RS01140	COG1454	alcohol dehydrogenase
J5M87_RS01140	COG1012	belongs to the aldehyde dehydrogenase family
J5M87_RS01145	COG3458	cephalosporin-C deacetylase activity
J5M87_RS01150	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
J5M87_RS01160	COG1175	transmembrane transport
J5M87_RS01165	COG0395	ABC-type sugar transport system, permease component
J5M87_RS01180	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J5M87_RS01190	COG1737	Transcriptional regulator
J5M87_RS01195	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5M87_RS01210	COG0534	Mate efflux family protein
J5M87_RS01215	COG0789	Transcriptional regulator
J5M87_RS01220	COG3804	dihydrodipicolinate reductase
J5M87_RS01230	COG3830	Belongs to the UPF0237 family
J5M87_RS01235	COG2848	UPF0210 protein
J5M87_RS01240	COG0588	phosphoglycerate mutase activity
J5M87_RS01270	COG1420	regulation of RNA biosynthetic process
J5M87_RS01275	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J5M87_RS01285	COG0484	heat shock protein binding
J5M87_RS01310	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5M87_RS01315	COG0765	amino acid transport
J5M87_RS01330	COG0351	phosphomethylpyrimidine kinase
J5M87_RS01340	COG4475	Protein of unknown function (DUF436)
J5M87_RS01345	COG1132	(ABC) transporter
J5M87_RS01350	COG0544	peptidyl-prolyl cis-trans isomerase activity
J5M87_RS01355	COG3343	RNA polymerase activity
J5M87_RS01360	COG0504	CTP synthase activity
J5M87_RS01365	COG1132	(ABC) transporter
J5M87_RS01375	COG0191	fructose-bisphosphate aldolase activity
J5M87_RS01380	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J5M87_RS01390	COG1461	Dihydroxyacetone kinase
J5M87_RS01395	COG1609	Transcriptional regulator
J5M87_RS01400	COG4209	transmembrane transport
J5M87_RS01405	COG0395	ABC-type sugar transport system, permease component
J5M87_RS01415	COG1621	beta-fructofuranosidase activity
J5M87_RS01425	COG0629	single-stranded DNA binding
J5M87_RS01430	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J5M87_RS01445	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J5M87_RS01465	COG0006	proline dipeptidase activity
J5M87_RS01480	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J5M87_RS01485	COG1609	Transcriptional regulator
J5M87_RS01490	COG1621	beta-fructofuranosidase activity
J5M87_RS01495	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5M87_RS01495	COG1263	PTS System
J5M87_RS01495	COG2190	(PTS) system
J5M87_RS01500	COG1940	carbohydrate kinase activity
J5M87_RS01505	COG1482	cell wall glycoprotein biosynthetic process
J5M87_RS01510	COG0653	protein targeting
J5M87_RS01515	COG0736	holo-[acyl-carrier-protein] synthase activity
J5M87_RS01520	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J5M87_RS01530	COG3684	Belongs to the aldolase LacD family
J5M87_RS01535	COG0527	aspartate kinase activity
J5M87_RS01540	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5M87_RS01545	COG1024	Enoyl-CoA hydratase
J5M87_RS01555	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J5M87_RS01570	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
J5M87_RS01575	COG1028	Short-chain dehydrogenase reductase Sdr
J5M87_RS01580	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J5M87_RS01590	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J5M87_RS01595	COG0439	Biotin carboxylase
J5M87_RS01605	COG0825	malonyl-CoA metabolic process
J5M87_RS01620	COG3716	PTS system mannose fructose sorbose family IID component
J5M87_RS01625	COG3715	PTS system
J5M87_RS01635	COG0561	phosphatase activity
J5M87_RS01640	COG2252	PERMEase
J5M87_RS01645	COG0802	atpase or kinase
J5M87_RS01655	COG1316	TRANSCRIPTIONal
J5M87_RS01665	COG0537	adenosine 5'-monophosphoramidase activity
J5M87_RS01670	COG1131	(ABC) transporter
J5M87_RS01675	COG4473	ABC transporter
J5M87_RS01685	COG0220	tRNA (guanine-N7-)-methyltransferase activity
J5M87_RS01690	COG0779	Required for maturation of 30S ribosomal subunits
J5M87_RS01695	COG0195	Participates in both transcription termination and antitermination
J5M87_RS01700	COG2740	Nucleic-acid-binding protein implicated in transcription termination
J5M87_RS01710	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J5M87_RS01715	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J5M87_RS01720	COG4372	Transposase
J5M87_RS01740	COG2151	metal-sulfur cluster biosynthetic enzyme
J5M87_RS01755	COG0028	Belongs to the TPP enzyme family
J5M87_RS01760	COG0440	acetolactate synthase activity
J5M87_RS01765	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J5M87_RS01770	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
J5M87_RS01785	COG1126	abc transporter atp-binding protein
J5M87_RS01790	COG0765	amino acid transport
J5M87_RS01795	COG1968	undecaprenyl-diphosphatase activity
J5M87_RS01800	COG4862	establishment of competence for transformation
J5M87_RS01805	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J5M87_RS01815	COG0719	Fe-S assembly protein
J5M87_RS01820	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J5M87_RS01835	COG1686	Belongs to the peptidase S11 family
J5M87_RS01840	COG0747	negative chemotaxis
J5M87_RS01850	COG4608	Belongs to the ABC transporter superfamily
J5M87_RS01855	COG0601	transmembrane transport
J5M87_RS01860	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J5M87_RS01960	COG3557	Belongs to the UPF0374 family
J5M87_RS01965	COG2137	regulation of response to DNA damage stimulus
J5M87_RS01970	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5M87_RS01980	COG2188	Transcriptional regulator
J5M87_RS01985	COG2188	Transcriptional regulator
J5M87_RS01995	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5M87_RS02000	COG3715	PTS system
J5M87_RS02005	COG3716	PTS system mannose fructose sorbose family IID component
J5M87_RS02015	COG2017	converts alpha-aldose to the beta-anomer
J5M87_RS02020	COG1113	amino acid transport
J5M87_RS02045	COG4988	ABC transporter
J5M87_RS02050	COG0641	radical SAM
J5M87_RS02055	COG1396	sequence-specific DNA binding
J5M87_RS02070	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5M87_RS02095	COG0519	Catalyzes the synthesis of GMP from XMP
J5M87_RS02100	COG0346	lactoylglutathione lyase activity
J5M87_RS02185	COG1846	Transcriptional regulator
J5M87_RS02195	COG1132	(ABC) transporter
J5M87_RS02200	COG1832	CoA-binding protein
J5M87_RS02215	COG2822	iron ion transport
J5M87_RS02220	COG2837	iron assimilation
J5M87_RS02225	COG0672	)-iron permease
J5M87_RS02230	COG0805	protein transport
J5M87_RS02235	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J5M87_RS02240	COG2315	Protein conserved in bacteria
J5M87_RS02255	COG0494	nUDIX hydrolase
J5M87_RS02260	COG0542	response to heat
J5M87_RS02265	COG4703	Protein of unknown function (DUF1797)
J5M87_RS02270	COG0765	amino acid transport
J5M87_RS02275	COG1126	abc transporter atp-binding protein
J5M87_RS02280	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J5M87_RS02285	COG3513	CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). In type II CRISPR systems correct processing of pre-crRNA requires a trans-encoded small RNA (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The tracrRNA serves as a guide for ribonuclease 3-aided processing of pre-crRNA. Subsequently Cas9 crRNA tracrRNA endonucleolytically cleaves linear or circular dsDNA target complementary to the spacer
J5M87_RS02290	COG1518	maintenance of DNA repeat elements
J5M87_RS02295	COG3512	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
J5M87_RS02305	COG1570	exodeoxyribonuclease VII activity
J5M87_RS02310	COG1722	exodeoxyribonuclease VII activity
J5M87_RS02320	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
J5M87_RS02325	COG1438	arginine binding
J5M87_RS02330	COG0497	DNA recombination
J5M87_RS02335	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J5M87_RS02340	COG1307	EDD domain protein, DegV family
J5M87_RS02345	COG2755	lipolytic protein G-D-S-L family
J5M87_RS02355	COG0776	regulation of translation
J5M87_RS02370	COG3425	synthase
J5M87_RS02390	COG0726	polysaccharide deacetylase
J5M87_RS02430	COG0066	3-isopropylmalate dehydratase activity
J5M87_RS02440	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
J5M87_RS02445	COG1285	pathogenesis
J5M87_RS02460	COG1363	Peptidase, m42
J5M87_RS02470	COG0343	queuine tRNA-ribosyltransferase activity
J5M87_RS02475	COG0789	Transcriptional regulator
J5M87_RS02480	COG0538	isocitrate dehydrogenase activity
J5M87_RS02485	COG0372	Belongs to the citrate synthase family
J5M87_RS02490	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
J5M87_RS02495	COG1959	2 iron, 2 sulfur cluster binding
J5M87_RS02500	COG2910	NAD(P)H-binding
J5M87_RS02505	COG2514	catechol 2,3-dioxygenase activity
J5M87_RS02510	COG3759	membrane
J5M87_RS02525	COG1609	Transcriptional regulator
J5M87_RS02535	COG0438	transferase activity, transferring glycosyl groups
J5M87_RS02555	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
J5M87_RS02570	COG1064	alcohol dehydrogenase
J5M87_RS02590	COG0745	RESPONSE REGULATOR receiver
J5M87_RS02600	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
J5M87_RS02605	COG0488	(ABC) transporter
J5M87_RS02610	COG0768	penicillin binding
J5M87_RS02615	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J5M87_RS02620	COG1181	Belongs to the D-alanine--D-alanine ligase family
J5M87_RS02630	COG1136	(ABC) transporter
J5M87_RS02635	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J5M87_RS02665	COG1131	(ABC) transporter
J5M87_RS02675	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
J5M87_RS02690	COG0513	Belongs to the DEAD box helicase family
J5M87_RS02695	COG0640	Transcriptional regulator
J5M87_RS02705	COG1755	Isoprenylcysteine carboxyl methyltransferase
J5M87_RS02720	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
J5M87_RS02725	COG0204	Acyl-transferase
J5M87_RS02730	COG1596	polysaccharide export
J5M87_RS02730	COG1555	photosystem II stabilization
J5M87_RS02735	COG2333	competence protein COMEC
J5M87_RS02735	COG0658	competence protein
J5M87_RS02750	COG4974	Belongs to the 'phage' integrase family
J5M87_RS02945	COG1466	dna polymerase III delta subunit
J5M87_RS02950	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
J5M87_RS02955	COG0436	Aminotransferase
J5M87_RS02960	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
J5M87_RS02970	COG0363	glucosamine-6-phosphate deaminase activity
J5M87_RS02975	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J5M87_RS02980	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J5M87_RS02990	COG1242	4 iron, 4 sulfur cluster binding
J5M87_RS02995	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
J5M87_RS03005	COG0025	NhaP-type Na H and K H
J5M87_RS03010	COG1119	ATPase activity
J5M87_RS03015	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5M87_RS03020	COG1253	flavin adenine dinucleotide binding
J5M87_RS03025	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J5M87_RS03040	COG1227	inorganic diphosphatase activity
J5M87_RS03060	COG5002	protein histidine kinase activity
J5M87_RS03065	COG1136	(ABC) transporter
J5M87_RS03070	COG0577	efflux transmembrane transporter activity
J5M87_RS03080	COG1028	Short-chain dehydrogenase reductase Sdr
J5M87_RS03095	COG0494	nUDIX hydrolase
J5M87_RS03110	COG1442	glycosyl transferase family 8
J5M87_RS03120	COG0438	transferase activity, transferring glycosyl groups
J5M87_RS03125	COG0201	protein transport
J5M87_RS03145	COG0653	protein targeting
J5M87_RS03150	COG0438	transferase activity, transferring glycosyl groups
J5M87_RS03160	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J5M87_RS03185	COG0697	spore germination
J5M87_RS03185	COG1674	ftsk spoiiie
J5M87_RS03190	COG0346	lactoylglutathione lyase activity
J5M87_RS03200	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J5M87_RS03215	COG0625	glutathione transferase activity
J5M87_RS03230	COG2244	polysaccharide biosynthetic process
J5M87_RS03235	COG0528	UMP kinase activity
J5M87_RS03240	COG0233	cytoplasmic translational termination
J5M87_RS03245	COG2996	Protein conserved in bacteria
J5M87_RS03255	COG4479	Belongs to the UPF0346 family
J5M87_RS03260	COG1702	phosphate starvation-inducible protein PhoH
J5M87_RS03275	COG1132	(ABC) transporter
J5M87_RS03280	COG1132	(ABC) transporter
J5M87_RS03285	COG2723	6-phospho-beta-galactosidase activity
J5M87_RS03295	COG3711	transcriptional antiterminator
J5M87_RS03305	COG1447	Phosphotransferase system cellobiose-specific component IIA
J5M87_RS03315	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5M87_RS03320	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J5M87_RS03335	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J5M87_RS03340	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J5M87_RS03350	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J5M87_RS03355	COG0237	dephospho-CoA kinase activity
J5M87_RS03360	COG2814	Major facilitator Superfamily
J5M87_RS03365	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J5M87_RS03375	COG0557	exoribonuclease II activity
J5M87_RS03380	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J5M87_RS03395	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
J5M87_RS03410	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J5M87_RS03410	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J5M87_RS03415	COG2131	deaminase
J5M87_RS03420	COG4152	abc transporter atp-binding protein
J5M87_RS03430	COG1091	dTDP-4-dehydrorhamnose reductase activity
J5M87_RS03440	COG1215	transferase activity, transferring glycosyl groups
J5M87_RS03455	COG1216	Glycosyl transferase, family 2
J5M87_RS03455	COG1442	glycosyl transferase family 8
J5M87_RS03460	COG3754	Rhamnan synthesis protein F
J5M87_RS03465	COG1368	sulfuric ester hydrolase activity
J5M87_RS03490	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J5M87_RS03500	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J5M87_RS03510	COG4372	Transposase
J5M87_RS03535	COG1368	sulfuric ester hydrolase activity
J5M87_RS03540	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J5M87_RS03545	COG0710	3-dehydroquinate dehydratase activity
J5M87_RS03550	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
J5M87_RS03555	COG0287	Prephenate dehydrogenase
J5M87_RS03560	COG3679	Belongs to the UPF0342 family
J5M87_RS03575	COG4120	Belongs to the binding-protein-dependent transport system permease family
J5M87_RS03580	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5M87_RS03585	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J5M87_RS03590	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J5M87_RS03595	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J5M87_RS03600	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J5M87_RS03620	COG0077	Prephenate dehydratase
J5M87_RS03630	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J5M87_RS03655	COG2873	o-acetylhomoserine
J5M87_RS03660	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J5M87_RS03665	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J5M87_RS03675	COG0024	Methionine aminopeptidase
J5M87_RS03690	COG4708	membrane
J5M87_RS03695	COG2183	response to ionizing radiation
J5M87_RS03700	COG3091	SprT-like family
J5M87_RS03715	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
J5M87_RS03720	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J5M87_RS03745	COG0826	peptidase U32
J5M87_RS03755	COG4443	Transcriptional Coactivator p15 (PC4)
J5M87_RS03760	COG1268	BioY protein
J5M87_RS03765	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J5M87_RS03770	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J5M87_RS03775	COG1136	(ABC) transporter
J5M87_RS03780	COG0577	efflux transmembrane transporter activity
J5M87_RS03815	COG2217	Heavy metal translocating P-type atpase
J5M87_RS03820	COG1114	Component of the transport system for branched-chain amino acids
J5M87_RS03825	COG0785	Cytochrome C biogenesis protein
J5M87_RS03830	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5M87_RS03835	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J5M87_RS03835	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J5M87_RS03840	COG4753	response regulator
J5M87_RS03840	COG2207	Transcriptional regulator
J5M87_RS03845	COG2972	Histidine kinase
J5M87_RS03860	COG0210	DNA helicase
J5M87_RS03865	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
J5M87_RS03870	COG1074	ATP-dependent DNA helicase activity
J5M87_RS03880	COG0328	RNA-DNA hybrid ribonuclease activity
J5M87_RS03885	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS03890	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS03890	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS03890	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS03895	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS03900	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS03900	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS03900	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS03905	COG0383	alpha-mannosidase activity
J5M87_RS03910	COG3711	transcriptional antiterminator
J5M87_RS03915	COG0800	Aldolase
J5M87_RS03925	COG3414	Phosphotransferase system galactitol-specific IIB component
J5M87_RS03930	COG3775	system Galactitol-specific IIC component
J5M87_RS03935	COG4948	Mandelate Racemase Muconate Lactonizing
J5M87_RS03945	COG1011	Hydrolase
J5M87_RS03980	COG0488	(ABC) transporter
J5M87_RS03990	COG0481	GTPase activity
J5M87_RS03995	COG1126	abc transporter atp-binding protein
J5M87_RS04010	COG0556	nucleotide-excision repair
J5M87_RS04030	COG1396	sequence-specific DNA binding
J5M87_RS04045	COG4464	protein tyrosine phosphatase activity
J5M87_RS04050	COG3944	biosynthesis protein
J5M87_RS04065	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J5M87_RS04075	COG1216	Glycosyl transferase, family 2
J5M87_RS04080	COG0438	transferase activity, transferring glycosyl groups
J5M87_RS04110	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
J5M87_RS04115	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J5M87_RS04125	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J5M87_RS04150	COG4372	Transposase
J5M87_RS04180	COG1216	Glycosyl transferase, family 2
J5M87_RS04195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5M87_RS04205	COG0297	glycogen (starch) synthase activity
J5M87_RS04210	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J5M87_RS04215	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J5M87_RS04220	COG0583	DNA-binding transcription factor activity
J5M87_RS04225	COG0543	2 iron, 2 sulfur cluster binding
J5M87_RS04230	COG0167	dihydroorotate dehydrogenase activity
J5M87_RS04250	COG0463	Glycosyl transferase, family 2
J5M87_RS04260	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J5M87_RS04265	COG1051	belongs to the nudix hydrolase family
J5M87_RS04270	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
J5M87_RS04275	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
J5M87_RS04280	COG0187	DNA topoisomerase II activity
J5M87_RS04285	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5M87_RS04290	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J5M87_RS04310	COG0539	negative regulation of cytoplasmic translation
J5M87_RS04325	COG1104	cysteine desulfurase activity
J5M87_RS04330	COG0301	tRNA thio-modification
J5M87_RS04340	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J5M87_RS04345	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J5M87_RS04390	COG0583	DNA-binding transcription factor activity
J5M87_RS04400	COG0564	pseudouridine synthase activity
J5M87_RS04405	COG2824	Alkylphosphonate utilization operon protein PhnA
J5M87_RS04420	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
J5M87_RS04425	COG0540	Belongs to the ATCase OTCase family
J5M87_RS04430	COG0505	Belongs to the CarA family
J5M87_RS04445	COG2521	methyltransferase
J5M87_RS04445	COG2136	Putative SAM-dependent methyltransferase
J5M87_RS04495	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J5M87_RS04500	COG0336	Belongs to the RNA methyltransferase TrmD family
J5M87_RS04505	COG3443	Belongs to the bacterial solute-binding protein 9 family
J5M87_RS04505	COG0803	Belongs to the bacterial solute-binding protein 9 family
J5M87_RS04515	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J5M87_RS04525	COG1105	Belongs to the carbohydrate kinase PfkB family
J5M87_RS04530	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS04530	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS04530	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS04540	COG1307	EDD domain protein, DegV family
J5M87_RS04545	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J5M87_RS04550	COG0617	tRNA 3'-terminal CCA addition
J5M87_RS04555	COG0488	(ABC) transporter
J5M87_RS04565	COG1940	carbohydrate kinase activity
J5M87_RS04575	COG0737	Belongs to the 5'-nucleotidase family
J5M87_RS04580	COG0656	L-ascorbic acid biosynthetic process
J5M87_RS04585	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
J5M87_RS04590	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
J5M87_RS04600	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J5M87_RS04625	COG0698	ribose 5-phosphate isomerase
J5M87_RS04630	COG0698	ribose 5-phosphate isomerase
J5M87_RS04635	COG3684	Belongs to the aldolase LacD family
J5M87_RS04640	COG3711	transcriptional antiterminator
J5M87_RS04650	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5M87_RS04650	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5M87_RS04655	COG2723	6-phospho-beta-galactosidase activity
J5M87_RS04660	COG0726	polysaccharide deacetylase
J5M87_RS04665	COG0460	homoserine dehydrogenase
J5M87_RS04670	COG0083	homoserine kinase activity
J5M87_RS04675	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J5M87_RS04685	COG1176	ABC-type spermidine putrescine transport system, permease component I
J5M87_RS04690	COG1177	transmembrane transport
J5M87_RS04695	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J5M87_RS04700	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J5M87_RS04725	COG5002	protein histidine kinase activity
J5M87_RS04730	COG0534	Mate efflux family protein
J5M87_RS04740	COG1942	4-Oxalocrotonate Tautomerase
J5M87_RS04745	COG1435	thymidine kinase activity
J5M87_RS04750	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J5M87_RS04755	COG2890	protein-(glutamine-N5) methyltransferase activity
J5M87_RS04765	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J5M87_RS04825	COG1518	maintenance of DNA repeat elements
J5M87_RS04835	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
J5M87_RS04840	COG4221	oxidoreductase activity
J5M87_RS04850	COG4372	Transposase
J5M87_RS04900	COG2188	Transcriptional regulator
J5M87_RS04910	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J5M87_RS04920	COG4974	Belongs to the 'phage' integrase family
J5M87_RS04935	COG5002	protein histidine kinase activity
J5M87_RS04940	COG0745	RESPONSE REGULATOR receiver
J5M87_RS04950	COG1136	(ABC) transporter
J5M87_RS04975	COG2190	(PTS) system
J5M87_RS04975	COG1263	PTS System
J5M87_RS04975	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5M87_RS04980	COG3711	transcriptional antiterminator
J5M87_RS04985	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
J5M87_RS04990	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J5M87_RS04995	COG0758	DNA mediated transformation
J5M87_RS05000	COG0110	maltose O-acetyltransferase activity
J5M87_RS05005	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J5M87_RS05010	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
J5M87_RS05020	COG0596	Alpha beta hydrolase
J5M87_RS05025	COG1063	alcohol dehydrogenase
J5M87_RS05045	COG1164	Oligoendopeptidase f
J5M87_RS05050	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J5M87_RS05055	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J5M87_RS05060	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J5M87_RS05070	COG0446	pyridine nucleotide-disulphide oxidoreductase
J5M87_RS05075	COG1132	(ABC) transporter
J5M87_RS05080	COG1132	(ABC) transporter
J5M87_RS05085	COG1132	(ABC) transporter
J5M87_RS05090	COG0789	Transcriptional regulator
J5M87_RS05100	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J5M87_RS05170	COG5444	nuclease activity
J5M87_RS05285	COG2759	Belongs to the formate--tetrahydrofolate ligase family
J5M87_RS05295	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J5M87_RS05300	COG4684	Psort location CytoplasmicMembrane, score
J5M87_RS05305	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5M87_RS05315	COG1132	(ABC) transporter
J5M87_RS05320	COG1132	(ABC) transporter
J5M87_RS05325	COG0280	phosphate acetyltransferase
J5M87_RS05330	COG0564	pseudouridine synthase activity
J5M87_RS05335	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J5M87_RS05340	COG2357	RelA SpoT domain protein
J5M87_RS05355	COG1104	cysteine desulfurase activity
J5M87_RS05375	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
J5M87_RS05385	COG3764	Sortase (surface protein transpeptidase)
J5M87_RS05390	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J5M87_RS05395	COG0039	L-malate dehydrogenase activity
J5M87_RS05400	COG1079	Belongs to the binding-protein-dependent transport system permease family
J5M87_RS05405	COG4603	Belongs to the binding-protein-dependent transport system permease family
J5M87_RS05410	COG3845	ABC transporter
J5M87_RS05415	COG1744	ABC transporter substrate-binding protein PnrA-like
J5M87_RS05420	COG0295	cytidine deaminase activity
J5M87_RS05435	COG2813	Specifically methylates the guanine in position
J5M87_RS05440	COG1072	(Pantothenic acid kinase))
J5M87_RS05445	COG0268	Binds directly to 16S ribosomal RNA
J5M87_RS05455	COG1053	succinate dehydrogenase
J5M87_RS05455	COG3976	FMN-binding domain protein
J5M87_RS05460	COG5002	protein histidine kinase activity
J5M87_RS05465	COG0745	RESPONSE REGULATOR receiver
J5M87_RS05470	COG0704	Plays a role in the regulation of phosphate uptake
J5M87_RS05475	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5M87_RS05480	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J5M87_RS05485	COG0581	inorganic phosphate transmembrane transporter activity
J5M87_RS05490	COG0573	inorganic phosphate transmembrane transporter activity
J5M87_RS05500	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
J5M87_RS05500	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J5M87_RS05505	COG0483	inositol monophosphate 1-phosphatase activity
J5M87_RS05515	COG1393	Belongs to the ArsC family
J5M87_RS05520	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J5M87_RS05525	COG0196	riboflavin kinase activity
J5M87_RS05530	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
J5M87_RS05560	COG1252	NADH dehydrogenase
J5M87_RS05565	COG1271	oxidase subunit
J5M87_RS05570	COG1294	oxidase, subunit
J5M87_RS05575	COG4988	ABC transporter
J5M87_RS05580	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J5M87_RS05590	COG1621	beta-fructofuranosidase activity
J5M87_RS05595	COG2207	Transcriptional regulator
J5M87_RS05605	COG0142	geranyltranstransferase activity
J5M87_RS05610	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
J5M87_RS05615	COG0006	proline dipeptidase activity
J5M87_RS05620	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5M87_RS05625	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J5M87_RS05630	COG1447	Phosphotransferase system cellobiose-specific component IIA
J5M87_RS05635	COG1363	Peptidase, m42
J5M87_RS05645	COG0561	phosphatase activity
J5M87_RS05650	COG2195	Cleaves the N-terminal amino acid of tripeptides
J5M87_RS05675	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J5M87_RS05680	COG0246	Mannitol dehydrogenase
J5M87_RS05685	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS05690	COG3711	transcriptional antiterminator
J5M87_RS05695	COG2213	PTS system mannitol-specific
J5M87_RS05700	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5M87_RS05705	COG1126	abc transporter atp-binding protein
J5M87_RS05710	COG0765	amino acid transport
J5M87_RS05715	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J5M87_RS05725	COG0657	acetylesterase activity
J5M87_RS05725	COG2755	lipolytic protein G-D-S-L family
J5M87_RS05730	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
J5M87_RS05745	COG0469	pyruvate kinase activity
J5M87_RS05750	COG0205	6-phosphofructokinase activity
J5M87_RS05765	COG1131	(ABC) transporter
J5M87_RS05775	COG1523	belongs to the glycosyl hydrolase 13 family
J5M87_RS05780	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J5M87_RS05800	COG2151	metal-sulfur cluster biosynthetic enzyme
J5M87_RS05805	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J5M87_RS05810	COG0358	DNA primase activity
J5M87_RS05815	COG1970	mechanosensitive ion channel activity
J5M87_RS05820	COG1122	ATPase activity
J5M87_RS05825	COG1122	ATPase activity
J5M87_RS05840	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
J5M87_RS05850	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J5M87_RS05855	COG0828	Belongs to the bacterial ribosomal protein bS21 family
J5M87_RS05865	COG0647	UMP catabolic process
J5M87_RS05870	COG1051	belongs to the nudix hydrolase family
J5M87_RS05880	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J5M87_RS05885	COG0058	SHG alpha-glucan phosphorylase activity
J5M87_RS05890	COG0813	purine-nucleoside phosphorylase activity
J5M87_RS05910	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
J5M87_RS05915	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J5M87_RS05920	COG1704	LemA family
J5M87_RS05930	COG1573	uracil-dna glycosylase
J5M87_RS05955	COG4372	Transposase
J5M87_RS05960	COG0488	(ABC) transporter
J5M87_RS05965	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J5M87_RS05975	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
J5M87_RS05980	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J5M87_RS05985	COG3442	glutamine amidotransferase
J5M87_RS05990	COG5416	Lipopolysaccharide assembly protein A domain
J5M87_RS05995	COG4211	Belongs to the binding-protein-dependent transport system permease family
J5M87_RS06010	COG0488	(ABC) transporter
J5M87_RS06040	COG1293	RNA-binding protein homologous to eukaryotic snRNP
J5M87_RS06045	COG1051	belongs to the nudix hydrolase family
J5M87_RS06055	COG3527	Alpha-acetolactate decarboxylase
J5M87_RS06065	COG0628	permease
J5M87_RS06070	COG2706	6-phosphogluconolactonase activity
J5M87_RS06080	COG1442	glycosyl transferase family 8
J5M87_RS06085	COG1442	glycosyl transferase family 8
J5M87_RS06110	COG3475	LICD family
J5M87_RS06115	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
J5M87_RS06125	COG4372	Transposase
J5M87_RS06155	COG2855	membrane
J5M87_RS06165	COG0560	Phosphoserine phosphatase
J5M87_RS06170	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
J5M87_RS06175	COG0187	DNA topoisomerase II activity
J5M87_RS06180	COG0693	protein deglycase activity
J5M87_RS06185	COG0772	Belongs to the SEDS family
J5M87_RS06195	COG0254	rRNA binding
J5M87_RS06200	COG0431	NADPH-dependent FMN reductase
J5M87_RS06200	COG1053	succinate dehydrogenase
J5M87_RS06200	COG3976	FMN-binding domain protein
J5M87_RS06215	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J5M87_RS06220	COG0716	FMN binding
J5M87_RS06225	COG0038	chloride channel
J5M87_RS06230	COG0038	chloride channel
J5M87_RS06240	COG0335	large ribosomal subunit rRNA binding
J5M87_RS06245	COG1481	regulation of sporulation
J5M87_RS06255	COG1660	Displays ATPase and GTPase activities
J5M87_RS06260	COG0251	oxidation-reduction process
J5M87_RS06270	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J5M87_RS06275	COG0017	Asparaginyl-tRNA synthetase
J5M87_RS06280	COG0436	Aminotransferase
J5M87_RS06285	COG5353	protein conserved in bacteria
J5M87_RS06295	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
J5M87_RS06315	COG1272	protein, Hemolysin III
J5M87_RS06320	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J5M87_RS06345	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J5M87_RS06350	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J5M87_RS06355	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J5M87_RS06360	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J5M87_RS06360	COG1199	ATP-dependent helicase activity
J5M87_RS06370	COG2177	Part of the ABC transporter FtsEX involved in
J5M87_RS06375	COG2884	Cell division ATP-binding protein ftsE
J5M87_RS06385	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J5M87_RS06420	COG1078	dGTPase activity
J5M87_RS06430	COG2348	transferase activity, transferring amino-acyl groups
J5M87_RS06445	COG0149	triose-phosphate isomerase activity
J5M87_RS06455	COG0010	Belongs to the arginase family
J5M87_RS06460	COG2986	histidine ammonia-lyase
J5M87_RS06465	COG0531	amino acid
J5M87_RS06480	COG3404	Formiminotransferase-cyclodeaminase
J5M87_RS06490	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
J5M87_RS06495	COG1228	amidohydrolase
J5M87_RS06500	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J5M87_RS06525	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
J5M87_RS06530	COG0772	Belongs to the SEDS family
J5M87_RS06550	COG3859	Proton-coupled thiamine transporter YuaJ
J5M87_RS06560	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J5M87_RS06565	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J5M87_RS06570	COG0463	Glycosyl transferase, family 2
J5M87_RS06580	COG1088	dTDP-glucose 4,6-dehydratase activity
J5M87_RS06595	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
J5M87_RS06605	COG2384	SAM-dependent methyltransferase
J5M87_RS06620	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J5M87_RS06625	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
J5M87_RS06625	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J5M87_RS06670	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J5M87_RS06675	COG0300	oxidoreductase activity
J5M87_RS06680	COG1234	tRNA 3'-trailer cleavage
J5M87_RS06690	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J5M87_RS06695	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J5M87_RS06710	COG1396	sequence-specific DNA binding
J5M87_RS06715	COG1131	(ABC) transporter
J5M87_RS06725	COG2807	transmembrane transport
J5M87_RS06735	COG5002	protein histidine kinase activity
J5M87_RS06740	COG0745	RESPONSE REGULATOR receiver
J5M87_RS06745	COG1136	(ABC) transporter
J5M87_RS06765	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5M87_RS06790	COG3118	belongs to the thioredoxin family
J5M87_RS06815	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5M87_RS06815	COG0072	phenylalanine-tRNA ligase activity
J5M87_RS06850	COG1028	Short-chain dehydrogenase reductase Sdr
J5M87_RS06855	COG1312	Catalyzes the dehydration of D-mannonate
J5M87_RS06865	COG0800	Aldolase
J5M87_RS06875	COG3250	beta-galactosidase activity
J5M87_RS06885	COG2211	Major facilitator Superfamily
J5M87_RS06905	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J5M87_RS06915	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J5M87_RS06920	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J5M87_RS06925	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J5M87_RS06930	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J5M87_RS06935	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J5M87_RS06940	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J5M87_RS06945	COG0356	it plays a direct role in the translocation of protons across the membrane
J5M87_RS06955	COG1597	lipid kinase activity
J5M87_RS06970	COG0701	Predicted permease
J5M87_RS06975	COG3689	TIGRFAM TIGR03943 family protein
J5M87_RS06980	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J5M87_RS06985	COG0552	protein localization to endoplasmic reticulum
J5M87_RS06990	COG0561	phosphatase activity
J5M87_RS06995	COG0561	phosphatase activity
J5M87_RS07005	COG2190	(PTS) system
J5M87_RS07005	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5M87_RS07005	COG1263	PTS System
J5M87_RS07010	COG1737	Transcriptional regulator
J5M87_RS07015	COG2723	6-phospho-beta-galactosidase activity
J5M87_RS07020	COG1196	nuclear chromosome segregation
J5M87_RS07050	COG0559	Belongs to the binding-protein-dependent transport system permease family
J5M87_RS07055	COG0683	leucine binding
J5M87_RS07070	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J5M87_RS07075	COG3583	domain protein
J5M87_RS07090	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
J5M87_RS07095	COG0626	cystathionine gamma-synthase activity
J5M87_RS07100	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J5M87_RS07105	COG1187	pseudouridine synthase activity
J5M87_RS07110	COG3579	cysteine-type endopeptidase activity
J5M87_RS07120	COG0133	tryptophan synthase activity
J5M87_RS07135	COG4470	Protein conserved in bacteria
J5M87_RS07145	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J5M87_RS07150	COG0742	ribosomal rna small subunit methyltransferase
J5M87_RS07160	COG4483	Protein conserved in bacteria
J5M87_RS07170	COG2197	response regulator
J5M87_RS07175	COG4585	Histidine kinase
J5M87_RS07175	COG2203	Gaf domain
J5M87_RS07180	COG0842	Transport permease protein
J5M87_RS07185	COG1131	(ABC) transporter
J5M87_RS07205	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J5M87_RS07215	COG2755	lipolytic protein G-D-S-L family
J5M87_RS07215	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
J5M87_RS07225	COG0671	phosphoesterase, PA-phosphatase related
J5M87_RS07230	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
J5M87_RS07245	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
J5M87_RS07250	COG1187	pseudouridine synthase activity
J5M87_RS07255	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
J5M87_RS07260	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
J5M87_RS07265	COG0582	viral genome integration into host DNA
J5M87_RS07290	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J5M87_RS07295	COG3763	UPF0154 protein
J5M87_RS07320	COG1132	(ABC) transporter
J5M87_RS07325	COG4868	Belongs to the UPF0371 family
J5M87_RS07330	COG1178	ABC-type Fe3 transport system permease component
J5M87_RS07335	COG3842	ATPase activity
J5M87_RS07340	COG1840	ABC-type Fe3 transport system, periplasmic component
J5M87_RS07345	COG2207	Transcriptional regulator
J5M87_RS07345	COG4753	response regulator
J5M87_RS07350	COG2972	Histidine kinase
J5M87_RS07370	COG1132	(ABC) transporter
J5M87_RS07380	COG1162	GTPase activity
J5M87_RS07430	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS07435	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J5M87_RS07440	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J5M87_RS07445	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J5M87_RS07470	COG1476	TRANSCRIPTIONal
J5M87_RS07485	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J5M87_RS07490	COG4122	O-methyltransferase activity
J5M87_RS07505	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5M87_RS07505	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J5M87_RS07510	COG0708	Exodeoxyribonuclease III
J5M87_RS07515	COG0346	lactoylglutathione lyase activity
J5M87_RS07525	COG1393	Belongs to the ArsC family
J5M87_RS07540	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J5M87_RS07550	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J5M87_RS07560	COG4467	Involved in initiation control of chromosome replication
J5M87_RS07565	COG0470	DNA polymerase III
J5M87_RS07575	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5M87_RS07580	COG1125	glycine betaine transport
J5M87_RS07580	COG0517	IMP dehydrogenase activity
J5M87_RS07595	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J5M87_RS07600	COG1254	Belongs to the acylphosphatase family
J5M87_RS07620	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J5M87_RS07625	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J5M87_RS07635	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J5M87_RS07645	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J5M87_RS07655	COG1160	GTP binding
J5M87_RS07665	COG1484	DNA-dependent DNA replication
J5M87_RS07675	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J5M87_RS07680	COG0628	permease
J5M87_RS07685	COG0745	RESPONSE REGULATOR receiver
J5M87_RS07690	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
J5M87_RS07700	COG0492	ferredoxin-NADP+ reductase activity
J5M87_RS07710	COG0513	Belongs to the DEAD box helicase family
J5M87_RS07715	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
J5M87_RS07720	COG0768	penicillin binding
J5M87_RS07745	COG1477	protein flavinylation
J5M87_RS07750	COG4939	FMN-binding domain protein
J5M87_RS07755	COG0142	geranyltranstransferase activity
J5M87_RS07760	COG1252	NADH dehydrogenase
J5M87_RS07770	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J5M87_RS07775	COG0569	domain protein
J5M87_RS07780	COG0534	Mate efflux family protein
J5M87_RS07785	COG4224	UPF0291 protein
J5M87_RS07790	COG0751	glycine-tRNA ligase activity
J5M87_RS07810	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5M87_RS07815	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J5M87_RS07820	COG1464	Belongs to the NlpA lipoprotein family
J5M87_RS07835	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
J5M87_RS07840	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J5M87_RS07850	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J5M87_RS07890	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
J5M87_RS07900	COG3599	regulation of cell shape
J5M87_RS07905	COG2302	S4 RNA-binding domain
J5M87_RS07910	COG0762	integral membrane protein
J5M87_RS07915	COG1799	cell septum assembly
J5M87_RS07920	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J5M87_RS07940	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
J5M87_RS07955	COG1217	gtp-binding protein TYPA
J5M87_RS07970	COG0217	transcriptional regulatory protein
J5M87_RS07990	COG1263	PTS System
J5M87_RS07990	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5M87_RS07990	COG2190	(PTS) system
J5M87_RS08000	COG0058	SHG alpha-glucan phosphorylase activity
J5M87_RS08005	COG1640	4-alpha-glucanotransferase
J5M87_RS08010	COG2188	Transcriptional regulator
J5M87_RS08015	COG0242	peptide deformylase activity
J5M87_RS08030	COG2226	methyltransferase
J5M87_RS08035	COG0799	negative regulation of ribosome biogenesis
J5M87_RS08040	COG1713	HD superfamily hydrolase involved in NAD metabolism
J5M87_RS08045	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J5M87_RS08050	COG1534	Rna-binding protein
J5M87_RS08055	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
J5M87_RS08060	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
J5M87_RS08065	COG3142	Participates in the control of copper homeostasis
J5M87_RS08070	COG0697	spore germination
J5M87_RS08075	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
J5M87_RS08080	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J5M87_RS08085	COG1609	Transcriptional regulator
J5M87_RS08090	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5M87_RS08095	COG0154	amidase activity
J5M87_RS08100	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
J5M87_RS08105	COG1335	isochorismatase
J5M87_RS08110	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
J5M87_RS08115	COG0436	Aminotransferase
J5M87_RS08120	COG0589	response to stress
J5M87_RS08130	COG0252	asparaginase activity
J5M87_RS08135	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J5M87_RS08185	COG1040	competence protein
J5M87_RS08190	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
J5M87_RS08195	COG1739	Uncharacterized protein family UPF0029
J5M87_RS08205	COG1098	S1 RNA binding domain
J5M87_RS08220	COG4585	Histidine kinase
J5M87_RS08230	COG0515	serine threonine protein kinase
J5M87_RS08230	COG2815	serine threonine protein kinase
J5M87_RS08235	COG0631	protein serine/threonine phosphatase activity
J5M87_RS08240	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J5M87_RS08240	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J5M87_RS08245	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J5M87_RS08250	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J5M87_RS08260	COG1758	RNA polymerase activity
J5M87_RS08265	COG0194	GDP metabolic process
J5M87_RS08280	COG1418	mRNA catabolic process
J5M87_RS08285	COG1854	S-ribosylhomocysteine lyase activity
J5M87_RS08295	COG0116	Belongs to the methyltransferase superfamily
J5M87_RS08305	COG3599	regulation of cell shape
J5M87_RS08310	COG4474	Belongs to the UPF0398 family
J5M87_RS08315	COG3331	DNA recombination
J5M87_RS08320	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5M87_RS08325	COG0357	Ribosomal RNA small subunit methyltransferase G
J5M87_RS08335	COG1122	ATPase activity
J5M87_RS08340	COG1054	Belongs to the UPF0176 family
J5M87_RS08345	COG4720	Psort location CytoplasmicMembrane, score
J5M87_RS08355	COG0095	Lipoate-protein ligase
J5M87_RS08370	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5M87_RS08375	COG0508	dehydrogenase complex catalyzes the overall conversion of
J5M87_RS08375	COG0022	dehydrogenase e1 component
J5M87_RS08380	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
J5M87_RS08385	COG2860	membrane
J5M87_RS08390	COG1129	ABC transporter
J5M87_RS08410	COG1929	Belongs to the glycerate kinase type-1 family
J5M87_RS08430	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
J5M87_RS08445	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J5M87_RS08460	COG3842	ATPase activity
J5M87_RS08470	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
J5M87_RS08475	COG0215	cysteine-tRNA ligase activity
J5M87_RS08485	COG1045	serine acetyltransferase
J5M87_RS08495	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J5M87_RS08530	COG1187	pseudouridine synthase activity
J5M87_RS08540	COG0242	peptide deformylase activity
J5M87_RS08560	COG2309	aminopeptidase activity
J5M87_RS08570	COG1174	glycine betaine transport
J5M87_RS08575	COG2176	DNA-directed DNA polymerase activity
J5M87_RS08620	COG2376	Dihydroxyacetone kinase
J5M87_RS08630	COG2376	Dihydroxyacetone kinase
J5M87_RS08635	COG1461	Dihydroxyacetone kinase
J5M87_RS08640	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
J5M87_RS08645	COG0442	prolyl-tRNA aminoacylation
J5M87_RS08655	COG4589	Belongs to the CDS family
J5M87_RS08660	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J5M87_RS08665	COG1862	Preprotein translocase
J5M87_RS08680	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
J5M87_RS08685	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
J5M87_RS08695	COG3759	membrane
J5M87_RS08700	COG1846	Transcriptional regulator
J5M87_RS08705	COG1304	FMN binding
J5M87_RS08720	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J5M87_RS08725	COG2918	glutathione biosynthetic process
J5M87_RS08725	COG1181	Belongs to the D-alanine--D-alanine ligase family
J5M87_RS08730	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J5M87_RS08735	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J5M87_RS08740	COG0542	response to heat
J5M87_RS08760	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J5M87_RS08795	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J5M87_RS08800	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J5M87_RS08805	COG0492	ferredoxin-NADP+ reductase activity
J5M87_RS08810	COG0564	pseudouridine synthase activity
J5M87_RS08820	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J5M87_RS08825	COG0681	Belongs to the peptidase S26 family
J5M87_RS08830	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J5M87_RS08860	COG1882	Formate acetyltransferase
J5M87_RS08865	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
J5M87_RS08880	COG2936	dipeptidyl-peptidase activity
J5M87_RS08885	COG2222	sugar isomerase
J5M87_RS08890	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS08890	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS08890	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS08895	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS08895	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J5M87_RS08895	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J5M87_RS08905	COG1737	Transcriptional regulator
J5M87_RS08910	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J5M87_RS08915	COG3118	belongs to the thioredoxin family
J5M87_RS08925	COG1193	negative regulation of DNA recombination
J5M87_RS08940	COG2188	Transcriptional regulator
J5M87_RS08945	COG1263	PTS System
J5M87_RS08945	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5M87_RS08950	COG0366	Alpha amylase catalytic
J5M87_RS08955	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J5M87_RS08960	COG3481	metal-dependent phosphohydrolase, HD sub domain
J5M87_RS08970	COG1564	THIamine pyrophosphokinase
J5M87_RS08980	COG1162	GTPase activity
J5M87_RS08985	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J5M87_RS08995	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J5M87_RS09010	COG0084	hydrolase, TatD family'
J5M87_RS09015	COG0230	Belongs to the bacterial ribosomal protein bL34 family
J5M87_RS09030	COG0594	ribonuclease P activity
J5M87_RS09050	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J5M87_RS09085	COG0756	dUTP diphosphatase activity
J5M87_RS09090	COG5492	domain, Protein
J5M87_RS09100	COG0800	Aldolase
J5M87_RS09115	COG1028	Short-chain dehydrogenase reductase Sdr
J5M87_RS09125	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
J5M87_RS09130	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J5M87_RS09140	COG3716	PTS system mannose fructose sorbose family IID component
J5M87_RS09155	COG1609	Transcriptional regulator
J5M87_RS09160	COG1132	(ABC) transporter
J5M87_RS09165	COG1132	(ABC) transporter
J5M87_RS09170	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J5M87_RS09175	COG1210	Utp--glucose-1-phosphate uridylyltransferase
J5M87_RS09180	COG0457	Tetratricopeptide repeat
J5M87_RS09180	COG0705	Rhomboid family
J5M87_RS09185	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J5M87_RS09190	COG1473	amidohydrolase
J5M87_RS09210	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J5M87_RS09230	COG3623	hexulose-6-phosphate isomerase
J5M87_RS09250	COG3037	sugar-specific permease SgaT UlaA
J5M87_RS09270	COG1126	abc transporter atp-binding protein
J5M87_RS09275	COG0765	amino acid transport
J5M87_RS09280	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J5M87_RS09285	COG0626	cystathionine gamma-synthase activity
J5M87_RS09300	COG3590	peptidase
J5M87_RS09325	COG1490	D-aminoacyl-tRNA deacylase activity
J5M87_RS09335	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J5M87_RS09340	COG2264	protein methyltransferase activity
J5M87_RS09350	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J5M87_RS09365	COG0562	UDP-galactopyranose mutase
J5M87_RS09390	COG1328	CTP reductase activity
J5M87_RS09400	COG0285	dihydrofolate synthase activity
J5M87_RS09410	COG3906	Belongs to the UPF0473 family
J5M87_RS09415	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J5M87_RS09420	COG4472	Bacterial protein of unknown function (DUF965)
J5M87_RS09425	COG1393	Belongs to the ArsC family
J5M87_RS09430	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J5M87_RS09455	COG2818	Glycosylase
J5M87_RS09460	COG0632	four-way junction helicase activity
J5M87_RS09465	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J5M87_RS09495	COG1438	arginine binding
J5M87_RS09500	COG0018	arginyl-trna synthetase
J5M87_RS09510	COG1640	4-alpha-glucanotransferase
J5M87_RS09515	COG2182	Extracellular solute-binding protein
J5M87_RS09520	COG1175	transmembrane transport
J5M87_RS09525	COG3833	ABC-type maltose transport systems, permease component
J5M87_RS09530	COG5521	maltodextrose utilization protein MalA
J5M87_RS09535	COG1609	Transcriptional regulator
J5M87_RS09540	COG1523	belongs to the glycosyl hydrolase 13 family
J5M87_RS09545	COG1780	Probably involved in ribonucleotide reductase function
J5M87_RS09550	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5M87_RS09555	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J5M87_RS09560	COG4989	oxidoreductase activity
J5M87_RS09565	COG1216	Glycosyl transferase, family 2
J5M87_RS09570	COG1472	Belongs to the glycosyl hydrolase 3 family
J5M87_RS09600	COG1053	succinate dehydrogenase
J5M87_RS09615	COG0305	Participates in initiation and elongation during chromosome replication
J5M87_RS09620	COG0359	binds to the 23S rRNA
J5M87_RS09630	COG0445	tRNA wobble uridine modification
J5M87_RS09645	COG1760	l-serine dehydratase
J5M87_RS09650	COG1760	l-serine dehydratase
J5M87_RS09660	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
J5M87_RS09665	COG1122	ATPase activity
J5M87_RS09670	COG1122	ATPase activity
J5M87_RS09675	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J5M87_RS09680	COG1426	Protein conserved in bacteria
J5M87_RS09685	COG0612	Peptidase, M16
J5M87_RS09690	COG0612	Peptidase, M16
J5M87_RS09695	COG2501	S4 domain
J5M87_RS09700	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J5M87_RS09710	COG0516	GMP reductase activity
J5M87_RS09710	COG0517	IMP dehydrogenase activity
J5M87_RS09715	COG0180	Tryptophanyl-tRNA synthetase
J5M87_RS09720	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
J5M87_RS09725	COG0488	(ABC) transporter
J5M87_RS09755	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
J5M87_RS09760	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J5M87_RS09765	COG1475	DNA binding