SSUBM407_0001 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain SSUBM407_0002 SM00480 DNA polymerase III beta subunit SSUBM407_0005 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0008 SM00487 DEAD-like helicases superfamily SSUBM407_0008 SM00490 helicase superfamily c-terminal domain SSUBM407_0008 SM00982 SSUBM407_0008 SSUBM407_0008 SM01058 CarD-like/TRCF domain SSUBM407_0009 SM00363 S4 RNA-binding domain SSUBM407_0013 SM00977 TilS substrate C-terminal domain SSUBM407_0015 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0020 SM01400 SSUBM407_0020 SSUBM407_0026 SM01211 SSUBM407_0026 SSUBM407_0030 SM00798 AICARFT/IMPCHase bienzyme SSUBM407_0030 SM00851 MGS-like domain SSUBM407_0031 SM01209 SSUBM407_0031 SSUBM407_0031 SM01210 SSUBM407_0031 SSUBM407_0032 SM01001 AIR carboxylase SSUBM407_0036 SM00998 Adenylosuccinate lyase C-terminus SSUBM407_0040 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0042 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0043 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0053 SM00853 MutL C terminal dimerisation domain SSUBM407_0053 SM01340 SSUBM407_0053 SSUBM407_0054 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSUBM407_0057 SM00852 Probable molybdopterin binding domain SSUBM407_0058 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0061 SM00732 Likely ribonuclease with RNase H fold. SSUBM407_0065 SM01403 SSUBM407_0065 SSUBM407_0069 SM01382 SSUBM407_0069 SSUBM407_0069 SM01383 SSUBM407_0069 SSUBM407_0072 SM00322 K homology RNA-binding domain SSUBM407_0076 SM01374 SSUBM407_0076 SSUBM407_0077 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSUBM407_0091 SM00316 Ribosomal protein S1-like RNA-binding domain SSUBM407_0095 SM00662 RNA polymerases D SSUBM407_0107 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUBM407_0108 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0115 SM00363 S4 RNA-binding domain SSUBM407_0120 SM00663 RNA polymerase I subunit A N-terminus SSUBM407_0123 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0142 SM00883 Chaperonin 10 Kd subunit SSUBM407_0146 SM00838 Elongation factor G C-terminus SSUBM407_0146 SM00889 Elongation factor G, domain IV SSUBM407_0148 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SSUBM407_0151 SM00422 helix_turn_helix, mercury resistance SSUBM407_0152 SM01230 SSUBM407_0152 SSUBM407_0153 SM00849 Metallo-beta-lactamase superfamily SSUBM407_0158 SM00342 helix_turn_helix, arabinose operon control protein SSUBM407_0168 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0176 SM00861 Transketolase, pyrimidine binding domain SSUBM407_0180 SM01208 SSUBM407_0180 SSUBM407_0181 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SSUBM407_0181 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SSUBM407_0189 SM00478 endonuclease III SSUBM407_0194 SM00710 Parallel beta-helix repeats SSUBM407_0197 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0198 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_0206 SM00257 Lysin motif SSUBM407_0207 SM00642 Alpha-amylase domain SSUBM407_0209 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_0209 SM00866 SSUBM407_0209 SSUBM407_0212 SM00463 Small MutS-related domain SSUBM407_0212 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSUBM407_0212 SM00534 ATPase domain of DNA mismatch repair MUTS family SSUBM407_0217 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0220 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0225 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SSUBM407_0227 SM00854 Bacterial capsule synthesis protein PGA_cap SSUBM407_0231 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0251 SM00829 Enoylreductase SSUBM407_0255 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0258 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0264 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0265 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0268 SM00855 Phosphoglycerate mutase family SSUBM407_0272 SM00271 DnaJ molecular chaperone homology domain SSUBM407_0275 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_0277 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0288 SM00829 Enoylreductase SSUBM407_0304 SM00487 DEAD-like helicases superfamily SSUBM407_0304 SM00490 helicase superfamily c-terminal domain SSUBM407_0305 SM00870 SSUBM407_0305 SSUBM407_0315 SM00845 GatB domain SSUBM407_0317 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUBM407_0318 SM00354 helix_turn _helix lactose operon repressor SSUBM407_0326 SM01103 SSUBM407_0326 SSUBM407_0328 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUBM407_0335 SM00422 helix_turn_helix, mercury resistance SSUBM407_0339 SM00860 SMI1 / KNR4 family SSUBM407_0341 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0341 SM01086 C-terminal, D2-small domain, of ClpB protein SSUBM407_0344 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_0344 SM00866 SSUBM407_0344 SSUBM407_0353 SM00450 Rhodanese Homology Domain SSUBM407_0355 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0357 SM00357 Cold shock protein domain SSUBM407_0363 SM00981 SSUBM407_0363 SSUBM407_0366 SM00322 K homology RNA-binding domain SSUBM407_0366 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUBM407_0367 SM00072 Guanylate kinase homologues. SSUBM407_0368 SM01409 SSUBM407_0368 SSUBM407_0369 SM00487 DEAD-like helicases superfamily SSUBM407_0369 SM00490 helicase superfamily c-terminal domain SSUBM407_0372 SM00331 Sigma factor PP2C-like phosphatases SSUBM407_0372 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SSUBM407_0373 SM00220 Serine/Threonine protein kinases, catalytic domain SSUBM407_0373 SM00740 SSUBM407_0373 SSUBM407_0375 SM00387 Histidine kinase-like ATPases SSUBM407_0376 SM00421 helix_turn_helix, Lux Regulon SSUBM407_0376 SM00448 cheY-homologous receiver domain SSUBM407_0378 SM00316 Ribosomal protein S1-like RNA-binding domain SSUBM407_0381 SM00487 DEAD-like helicases superfamily SSUBM407_0381 SM00490 helicase superfamily c-terminal domain SSUBM407_0388 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_0388 SM00866 SSUBM407_0388 SSUBM407_0389 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_0389 SM00866 SSUBM407_0389 SSUBM407_0404 SM00487 DEAD-like helicases superfamily SSUBM407_0406 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0409 SM00838 Elongation factor G C-terminus SSUBM407_0420 SM00842 Cell division protein FtsA SSUBM407_0421 SM00864 Tubulin/FtsZ family, GTPase domain SSUBM407_0421 SM00865 Tubulin/FtsZ family, C-terminal domain SSUBM407_0425 SM00363 S4 RNA-binding domain SSUBM407_0431 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0431 SM01086 C-terminal, D2-small domain, of ClpB protein SSUBM407_0434 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0442 SM00422 helix_turn_helix, mercury resistance SSUBM407_0453 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0473 SM00487 DEAD-like helicases superfamily SSUBM407_0473 SM00490 helicase superfamily c-terminal domain SSUBM407_0482 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0483 SM00889 Elongation factor G, domain IV SSUBM407_0491 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0497 SM00400 zinc finger SSUBM407_0504 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0510 SM00420 helix_turn_helix, Deoxyribose operon repressor SSUBM407_0510 SM01134 SSUBM407_0510 SSUBM407_0515 SM01133 SSUBM407_0515 SSUBM407_0520 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0522 SM00857 Resolvase, N terminal domain SSUBM407_0523 SM00857 Resolvase, N terminal domain SSUBM407_0524 SM00857 Resolvase, N terminal domain SSUBM407_0527 SM00855 Phosphoglycerate mutase family SSUBM407_0541 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUBM407_0545 SM00831 Cation transporter/ATPase, N-terminus SSUBM407_0551 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0554 SM00899 SSUBM407_0554 SSUBM407_0555 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0556 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0565 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SSUBM407_0565 SM01232 SSUBM407_0565 SSUBM407_0570 SM00316 Ribosomal protein S1-like RNA-binding domain SSUBM407_0570 SM00955 SSUBM407_0570 SSUBM407_0572 SM00829 Enoylreductase SSUBM407_0578 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0581 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SSUBM407_0581 SM00474 3'-5' exonuclease SSUBM407_0581 SM00475 5'-3' exonuclease SSUBM407_0581 SM00482 DNA polymerase A domain SSUBM407_0583 SM00881 CoA binding domain SSUBM407_0587 SM00354 helix_turn _helix lactose operon repressor SSUBM407_0593 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSUBM407_0596 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_0597 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0598 SM00448 cheY-homologous receiver domain SSUBM407_0598 SM00862 Transcriptional regulatory protein, C terminal SSUBM407_0599 SM00091 PAS domain SSUBM407_0599 SM00387 Histidine kinase-like ATPases SSUBM407_0599 SM00388 His Kinase A (phosphoacceptor) domain SSUBM407_0600 SM00849 Metallo-beta-lactamase superfamily SSUBM407_0602 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0604 SM00493 SSUBM407_0604 SSUBM407_0616 SM00354 helix_turn _helix lactose operon repressor SSUBM407_0620 SM00640 Glycosyl hydrolases family 32 SSUBM407_0621 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0621 SM00843 SSUBM407_0621 SSUBM407_0624 SM00649 Ribosomal protein L11/L12 SSUBM407_0646 SM00631 SSUBM407_0646 SSUBM407_0647 SM00155 Phospholipase D. Active site motifs. SSUBM407_0662 SM00646 SSUBM407_0662 SSUBM407_0663 SM00047 Lysozyme subfamily 2 SSUBM407_0668 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0694 SM01133 SSUBM407_0694 SSUBM407_0699 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0713 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSUBM407_0718 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0735 SM01323 SSUBM407_0735 SSUBM407_0739 SM00354 helix_turn _helix lactose operon repressor SSUBM407_0746 SM01329 SSUBM407_0746 SSUBM407_0752 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSUBM407_0754 SM00358 Double-stranded RNA binding motif SSUBM407_0754 SM00535 Ribonuclease III family SSUBM407_0755 SM00968 SMC proteins Flexible Hinge Domain SSUBM407_0758 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0758 SM00962 SRP54-type protein, GTPase domain SSUBM407_0758 SM00963 SRP54-type protein, helical bundle domain SSUBM407_0764 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSUBM407_0764 SM00292 breast cancer carboxy-terminal domain SSUBM407_0764 SM00532 Ligase N family SSUBM407_0765 SM00046 Diacylglycerol kinase catalytic domain (presumed) SSUBM407_0772 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0777 SM00892 DNA/RNA non-specific endonuclease SSUBM407_0781 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_0781 SM00895 SSUBM407_0781 SSUBM407_0791 SM00873 B3/4 domain SSUBM407_0791 SM00874 tRNA synthetase B5 domain SSUBM407_0791 SM00896 Ferredoxin-fold anticodon binding domain SSUBM407_0799 SM00905 Dihydroneopterin aldolase SSUBM407_0805 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUBM407_0825 SM00904 Riboflavin kinase SSUBM407_0834 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0835 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0839 SM00448 cheY-homologous receiver domain SSUBM407_0839 SM00862 Transcriptional regulatory protein, C terminal SSUBM407_0840 SM00387 Histidine kinase-like ATPases SSUBM407_0840 SM00388 His Kinase A (phosphoacceptor) domain SSUBM407_0842 SM01321 SSUBM407_0842 SSUBM407_0846 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SSUBM407_0847 SM01133 SSUBM407_0847 SSUBM407_0850 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0855 SM00434 DNA Topoisomerase IV SSUBM407_0859 SM00881 CoA binding domain SSUBM407_0863 SM01400 SSUBM407_0863 SSUBM407_0864 SM01118 SSUBM407_0864 SSUBM407_0865 SM00954 Region found in RelA / SpoT proteins SSUBM407_0869 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0870 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0872 SM00478 endonuclease III SSUBM407_0873 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0879 SM00420 helix_turn_helix, Deoxyribose operon repressor SSUBM407_0879 SM01134 SSUBM407_0879 SSUBM407_0884 SM01133 SSUBM407_0884 SSUBM407_0885 SM01061 CAT RNA binding domain SSUBM407_0893 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0895 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0896 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_0896 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSUBM407_0897 SM00487 DEAD-like helicases superfamily SSUBM407_0897 SM00490 helicase superfamily c-terminal domain SSUBM407_0900 SM01208 SSUBM407_0900 SSUBM407_0903 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_0903 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSUBM407_0904 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_0904 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSUBM407_0905 SM00642 Alpha-amylase domain SSUBM407_0912 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSUBM407_0916 SM00986 Uracil DNA glycosylase superfamily SSUBM407_0916 SM00987 UreE urease accessory protein, C-terminal domain SSUBM407_0926 SM00450 Rhodanese Homology Domain SSUBM407_0927 SM00450 Rhodanese Homology Domain SSUBM407_0929 SM01266 SSUBM407_0929 SSUBM407_0931 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SSUBM407_0931 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SSUBM407_0931 SM00493 SSUBM407_0931 SSUBM407_0952 SM00650 Ribosomal RNA adenine dimethylases SSUBM407_0954 SM00889 Elongation factor G, domain IV SSUBM407_0958 SM01126 SSUBM407_0958 SSUBM407_0960 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0962 SM00400 zinc finger SSUBM407_0966 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0973 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0979 SM01126 SSUBM407_0979 SSUBM407_0980 SM01059 Chloramphenicol acetyltransferase SSUBM407_0983 SM00889 Elongation factor G, domain IV SSUBM407_0986 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_0995 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0996 SM00382 ATPases associated with a variety of cellular activities SSUBM407_0999 SM00448 cheY-homologous receiver domain SSUBM407_0999 SM00862 Transcriptional regulatory protein, C terminal SSUBM407_1000 SM00387 Histidine kinase-like ATPases SSUBM407_1000 SM00388 His Kinase A (phosphoacceptor) domain SSUBM407_1001 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_1006 SM00342 helix_turn_helix, arabinose operon control protein SSUBM407_1006 SM00871 Bacterial transcription activator, effector binding domain SSUBM407_1013 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1016 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1020 SM00448 cheY-homologous receiver domain SSUBM407_1020 SM00862 Transcriptional regulatory protein, C terminal SSUBM407_1021 SM00387 Histidine kinase-like ATPases SSUBM407_1028 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1028 SM00962 SRP54-type protein, GTPase domain SSUBM407_1028 SM00963 SRP54-type protein, helical bundle domain SSUBM407_1030 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_1030 SM00866 SSUBM407_1030 SSUBM407_1033 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1036 SM00910 SSUBM407_1036 SSUBM407_1045 SM00937 SSUBM407_1045 SSUBM407_1048 SM00894 Excalibur calcium-binding domain SSUBM407_1050 SM00838 Elongation factor G C-terminus SSUBM407_1051 SM00910 SSUBM407_1051 SSUBM407_1052 SM00562 SSUBM407_1052 SSUBM407_1054 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1054 SM00994 ClpX C4-type zinc finger SSUBM407_1054 SM01086 C-terminal, D2-small domain, of ClpB protein SSUBM407_1062 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1069 SM00420 helix_turn_helix, Deoxyribose operon repressor SSUBM407_1069 SM01134 SSUBM407_1069 SSUBM407_1074 SM01240 SSUBM407_1074 SSUBM407_1075 SM00478 endonuclease III SSUBM407_1083 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1088 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1089 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1095 SM00851 MGS-like domain SSUBM407_1095 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SSUBM407_1095 SM01209 SSUBM407_1095 SSUBM407_1096 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SSUBM407_1101 SM00363 S4 RNA-binding domain SSUBM407_1108 SM00981 SSUBM407_1108 SSUBM407_1113 SM00316 Ribosomal protein S1-like RNA-binding domain SSUBM407_1117 SM00434 DNA Topoisomerase IV SSUBM407_1123 SM00387 Histidine kinase-like ATPases SSUBM407_1123 SM00433 TopoisomeraseII SSUBM407_1124 SM01207 SSUBM407_1124 SSUBM407_1130 SM00465 GIY-YIG type nucleases (URI domain) SSUBM407_1131 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1138 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1139 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1143 SM00100 Cyclic nucleotide-monophosphate binding domain SSUBM407_1159 SM01130 SSUBM407_1159 SSUBM407_1160 SM00859 Semialdehyde dehydrogenase, NAD binding domain SSUBM407_1169 SM00420 helix_turn_helix, Deoxyribose operon repressor SSUBM407_1169 SM01134 SSUBM407_1169 SSUBM407_1179 SM00487 DEAD-like helicases superfamily SSUBM407_1211 SM00116 Domain in cystathionine beta-synthase and other proteins. SSUBM407_1213 SM00849 Metallo-beta-lactamase superfamily SSUBM407_1214 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSUBM407_1215 SM00563 Phosphate acyltransferases SSUBM407_1217 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1222 SM00363 S4 RNA-binding domain SSUBM407_1243 SM00100 Cyclic nucleotide-monophosphate binding domain SSUBM407_1243 SM00419 helix_turn_helix, cAMP Regulatory protein SSUBM407_1256 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUBM407_1280 SM00858 SSUBM407_1280 SSUBM407_1300 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_1305 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SSUBM407_1306 SM00479 SSUBM407_1306 SSUBM407_1306 SM00487 DEAD-like helicases superfamily SSUBM407_1306 SM00491 SSUBM407_1306 SSUBM407_1307 SM00849 Metallo-beta-lactamase superfamily SSUBM407_1311 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_1312 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1321 SM00481 DNA polymerase alpha chain like domain SSUBM407_1322 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUBM407_1323 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1332 SM00400 zinc finger SSUBM407_1332 SM00493 SSUBM407_1332 SSUBM407_1340 SM00729 Elongator protein 3, MiaB family, Radical SAM SSUBM407_1351 SM00487 DEAD-like helicases superfamily SSUBM407_1355 SM00244 prohibitin homologues SSUBM407_1358 SM00986 Uracil DNA glycosylase superfamily SSUBM407_1358 SM00987 UreE urease accessory protein, C-terminal domain SSUBM407_1366 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1373 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_1375 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1377 SM00235 Zinc-dependent metalloprotease SSUBM407_1379 SM00849 Metallo-beta-lactamase superfamily SSUBM407_1382 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1387 SM01061 CAT RNA binding domain SSUBM407_1390 SM00028 Tetratricopeptide repeats SSUBM407_1397 SM01192 SSUBM407_1397 SSUBM407_1397 SM01193 SSUBM407_1397 SSUBM407_1404 SM00387 Histidine kinase-like ATPases SSUBM407_1404 SM00433 TopoisomeraseII SSUBM407_1409 SM00885 D5 N terminal like SSUBM407_1422 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_1430 SM00830 Chorismate mutase type II SSUBM407_1437 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1438 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1445 SM00642 Alpha-amylase domain SSUBM407_1446 SM00642 Alpha-amylase domain SSUBM407_1451 SM00342 helix_turn_helix, arabinose operon control protein SSUBM407_1463 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSUBM407_1464 SM00487 DEAD-like helicases superfamily SSUBM407_1464 SM00490 helicase superfamily c-terminal domain SSUBM407_1467 SM00365 Leucine-rich repeat, SDS22-like subfamily SSUBM407_1475 SM01022 SSUBM407_1475 SSUBM407_1482 SM01321 SSUBM407_1482 SSUBM407_1484 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1485 SM00387 Histidine kinase-like ATPases SSUBM407_1486 SM00448 cheY-homologous receiver domain SSUBM407_1486 SM00862 Transcriptional regulatory protein, C terminal SSUBM407_1491 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1492 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUBM407_1501 SM00731 SprT homologues. SSUBM407_1502 SM00316 Ribosomal protein S1-like RNA-binding domain SSUBM407_1517 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1523 SM00487 DEAD-like helicases superfamily SSUBM407_1523 SM00490 helicase superfamily c-terminal domain SSUBM407_1527 SM00855 Phosphoglycerate mutase family SSUBM407_1534 SM00411 bacterial (prokaryotic) histone like domain SSUBM407_1540 SM00363 S4 RNA-binding domain SSUBM407_1546 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SSUBM407_1546 SM00387 Histidine kinase-like ATPases SSUBM407_1546 SM00388 His Kinase A (phosphoacceptor) domain SSUBM407_1547 SM00448 cheY-homologous receiver domain SSUBM407_1547 SM00862 Transcriptional regulatory protein, C terminal SSUBM407_1552 SM01131 SSUBM407_1552 SSUBM407_1555 SM01091 Transporter associated domain SSUBM407_1556 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1568 SM00450 Rhodanese Homology Domain SSUBM407_1570 SM00421 helix_turn_helix, Lux Regulon SSUBM407_1570 SM00448 cheY-homologous receiver domain SSUBM407_1573 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1576 SM00226 Low molecular weight phosphatase family SSUBM407_1577 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. SSUBM407_1579 SM00014 Acid phosphatase homologues SSUBM407_1583 SM01234 SSUBM407_1583 SSUBM407_1584 SM00363 S4 RNA-binding domain SSUBM407_1597 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSUBM407_1605 SM00487 DEAD-like helicases superfamily SSUBM407_1605 SM00490 helicase superfamily c-terminal domain SSUBM407_1614 SM00448 cheY-homologous receiver domain SSUBM407_1614 SM00862 Transcriptional regulatory protein, C terminal SSUBM407_1615 SM01350 SSUBM407_1615 SSUBM407_1619 SM00487 DEAD-like helicases superfamily SSUBM407_1619 SM00490 helicase superfamily c-terminal domain SSUBM407_1622 SM00740 SSUBM407_1622 SSUBM407_1625 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_1634 SM00900 SSUBM407_1634 SSUBM407_1647 SM00873 B3/4 domain SSUBM407_1649 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1649 SM00930 SSUBM407_1649 SSUBM407_1664 SM00487 DEAD-like helicases superfamily SSUBM407_1672 SM00878 Biotin carboxylase C-terminal domain SSUBM407_1675 SM00825 Beta-ketoacyl synthase SSUBM407_1676 SM00822 SSUBM407_1676 SSUBM407_1677 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SSUBM407_1681 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUBM407_1686 SM01005 Alanine racemase, C-terminal domain SSUBM407_1688 SM00957 SecA DEAD-like domain SSUBM407_1688 SM00958 SecA preprotein cross-linking domain SSUBM407_1692 SM00640 Glycosyl hydrolases family 32 SSUBM407_1693 SM00354 helix_turn _helix lactose operon repressor SSUBM407_1696 SM00841 Elongation factor P, C-terminal SSUBM407_1696 SM01185 SSUBM407_1696 SSUBM407_1698 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1709 SM00861 Transketolase, pyrimidine binding domain SSUBM407_1718 SM00316 Ribosomal protein S1-like RNA-binding domain SSUBM407_1718 SM00322 K homology RNA-binding domain SSUBM407_1723 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1729 SM01120 SSUBM407_1729 SSUBM407_1729 SM01121 SSUBM407_1729 SSUBM407_1734 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1735 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1737 SM00936 Penicillin-binding protein 5, C-terminal domain SSUBM407_1743 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1747 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_1748 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1750 SM00244 prohibitin homologues SSUBM407_1767 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSUBM407_1768 SM00740 SSUBM407_1768 SSUBM407_1772 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1774 SM00342 helix_turn_helix, arabinose operon control protein SSUBM407_1774 SM00448 cheY-homologous receiver domain SSUBM407_1783 SM00872 Alpha mannosidase, middle domain SSUBM407_1784 SM01149 SSUBM407_1784 SSUBM407_1786 SM01208 SSUBM407_1786 SSUBM407_1788 SM00840 SSUBM407_1788 SSUBM407_1792 SM00316 Ribosomal protein S1-like RNA-binding domain SSUBM407_1792 SM00322 K homology RNA-binding domain SSUBM407_1798 SM01387 SSUBM407_1798 SSUBM407_1802 SM00363 S4 RNA-binding domain SSUBM407_1810 SM01329 SSUBM407_1810 SSUBM407_1811 SM00917 LeuA allosteric (dimerisation) domain SSUBM407_1816 SM00479 SSUBM407_1816 SSUBM407_1816 SM00481 DNA polymerase alpha chain like domain SSUBM407_1820 SM01120 SSUBM407_1820 SSUBM407_1827 SM01323 SSUBM407_1827 SSUBM407_1828 SM00788 Adenylosuccinate synthetase SSUBM407_1836 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1836 SM01086 C-terminal, D2-small domain, of ClpB protein SSUBM407_1844 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SSUBM407_1844 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSUBM407_1854 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SSUBM407_1857 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1859 SM00530 Helix-turn-helix XRE-family like proteins SSUBM407_1863 SM00650 Ribosomal RNA adenine dimethylases SSUBM407_1871 SM00493 SSUBM407_1871 SSUBM407_1874 SM00393 Putative single-stranded nucleic acids-binding domain SSUBM407_1874 SM01245 SSUBM407_1874 SSUBM407_1888 SM00850 LytTr DNA-binding domain SSUBM407_1890 SM00947 Carbonic anhydrase SSUBM407_1891 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1892 SM00855 Phosphoglycerate mutase family SSUBM407_1894 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1895 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1896 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUBM407_1909 SM00861 Transketolase, pyrimidine binding domain SSUBM407_1913 SM01007 Class II Aldolase and Adducin N-terminal domain SSUBM407_1915 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSUBM407_1919 SM00642 Alpha-amylase domain SSUBM407_1919 SM01208 SSUBM407_1919 SSUBM407_1920 SM00354 helix_turn _helix lactose operon repressor SSUBM407_1921 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1923 SM00062 Bacterial periplasmic substrate-binding proteins SSUBM407_1937 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1940 SM00529 Helix-turn-helix diphteria tox regulatory element SSUBM407_1940 SM00899 SSUBM407_1940 SSUBM407_1948 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUBM407_1948 SM00954 Region found in RelA / SpoT proteins SSUBM407_1960 SM01022 SSUBM407_1960 SSUBM407_1963 SM00382 ATPases associated with a variety of cellular activities SSUBM407_1972 SM00850 LytTr DNA-binding domain SSUBM407_1973 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSUBM407_1973 SM00534 ATPase domain of DNA mismatch repair MUTS family SSUBM407_1975 SM00836 DALR anticodon binding domain SSUBM407_1975 SM01016 Arginyl tRNA synthetase N terminal dom SSUBM407_1976 SM00287 Bacterial SH3 domain homologues SSUBM407_1984 SM00354 helix_turn _helix lactose operon repressor SSUBM407_1985 SM00642 Alpha-amylase domain SSUBM407_1992 SM01217 SSUBM407_1992 SSUBM407_1994 SM01217 SSUBM407_1994 SSUBM407_1995 SM00448 cheY-homologous receiver domain SSUBM407_1995 SM00850 LytTr DNA-binding domain SSUBM407_2000 SM00363 S4 RNA-binding domain SSUBM407_2000 SM01390 SSUBM407_2000 SSUBM407_2006 SM01228 SSUBM407_2006 SSUBM407_2015 SM00257 Lysin motif SSUBM407_2017 SM00382 ATPases associated with a variety of cellular activities SSUBM407_2018 SM00382 ATPases associated with a variety of cellular activities SSUBM407_2025 SM00116 Domain in cystathionine beta-synthase and other proteins. SSUBM407_2025 SM01240 SSUBM407_2025 SSUBM407_2028 SM00382 ATPases associated with a variety of cellular activities SSUBM407_2032 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SSUBM407_2033 SM00470 ParB-like nuclease domain