SSUD12_RS00005 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SSUD12_RS00010 SM00480 DNA polymerase III beta subunit SSUD12_RS00025 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS00040 SM00487 DEAD-like helicases superfamily SSUD12_RS00040 SM00490 helicase superfamily c-terminal domain SSUD12_RS00040 SM00982 SSUD12_RS00040 SSUD12_RS00040 SM01058 CarD-like/TRCF domain SSUD12_RS00045 SM00363 S4 RNA-binding domain SSUD12_RS00065 SM00977 TilS substrate C-terminal domain SSUD12_RS00200 SM01400 SSUD12_RS00200 SSUD12_RS00255 SM00798 AICARFT/IMPCHase bienzyme SSUD12_RS00255 SM00851 MGS-like domain SSUD12_RS00280 SM01209 SSUD12_RS00280 SSUD12_RS00280 SM01210 SSUD12_RS00280 SSUD12_RS00285 SM01001 AIR carboxylase SSUD12_RS00305 SM00998 Adenylosuccinate lyase C-terminus SSUD12_RS00325 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00335 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00340 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00355 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS00380 SM00853 MutL C terminal dimerisation domain SSUD12_RS00380 SM01340 SSUD12_RS00380 SSUD12_RS00385 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSUD12_RS00395 SM00852 Probable molybdopterin binding domain SSUD12_RS00400 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00425 SM00732 Likely ribonuclease with RNase H fold. SSUD12_RS00435 SM01403 SSUD12_RS00435 SSUD12_RS00455 SM01382 SSUD12_RS00455 SSUD12_RS00455 SM01383 SSUD12_RS00455 SSUD12_RS00470 SM00322 K homology RNA-binding domain SSUD12_RS00490 SM01374 SSUD12_RS00490 SSUD12_RS00495 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSUD12_RS00555 SM00316 Ribosomal protein S1-like RNA-binding domain SSUD12_RS00575 SM00662 RNA polymerases D SSUD12_RS00680 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUD12_RS00685 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00730 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00740 SM00363 S4 RNA-binding domain SSUD12_RS00755 SM00663 RNA polymerase I subunit A N-terminus SSUD12_RS00770 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS00865 SM00883 Chaperonin 10 Kd subunit SSUD12_RS00885 SM00838 Elongation factor G C-terminus SSUD12_RS00885 SM00889 Elongation factor G, domain IV SSUD12_RS00890 SM01208 SSUD12_RS00890 SSUD12_RS00910 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SSUD12_RS00925 SM00422 helix_turn_helix, mercury resistance SSUD12_RS00930 SM01230 SSUD12_RS00930 SSUD12_RS00935 SM00849 Metallo-beta-lactamase superfamily SSUD12_RS00960 SM00342 helix_turn_helix, arabinose operon control protein SSUD12_RS01005 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01055 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SSUD12_RS01055 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SSUD12_RS01075 SM00257 Lysin motif SSUD12_RS01130 SM00257 Lysin motif SSUD12_RS01155 SM00866 SSUD12_RS01155 SSUD12_RS01170 SM00463 Small MutS-related domain SSUD12_RS01170 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSUD12_RS01170 SM00534 ATPase domain of DNA mismatch repair MUTS family SSUD12_RS01230 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS01250 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01275 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SSUD12_RS01280 SM00635 Bacterial Ig-like domain 2 SSUD12_RS01290 SM00854 Bacterial capsule synthesis protein PGA_cap SSUD12_RS01310 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01400 SM00829 Enoylreductase SSUD12_RS01415 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01420 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01435 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01445 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01450 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS01475 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01480 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01495 SM00855 Phosphoglycerate mutase family SSUD12_RS01505 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01510 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS01550 SM00271 DnaJ molecular chaperone homology domain SSUD12_RS01565 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS01575 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS01635 SM00829 Enoylreductase SSUD12_RS01785 SM00487 DEAD-like helicases superfamily SSUD12_RS01785 SM00490 helicase superfamily c-terminal domain SSUD12_RS01795 SM00870 SSUD12_RS01795 SSUD12_RS01855 SM00845 GatB domain SSUD12_RS01860 SM00354 helix_turn _helix lactose operon repressor SSUD12_RS01900 SM01103 SSUD12_RS01900 SSUD12_RS01910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUD12_RS01965 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS01965 SM01086 C-terminal, D2-small domain, of ClpB protein SSUD12_RS01980 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUD12_RS01980 SM00866 SSUD12_RS01980 SSUD12_RS02030 SM00450 Rhodanese Homology Domain SSUD12_RS02040 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02050 SM00357 Cold shock protein domain SSUD12_RS02080 SM00981 SSUD12_RS02080 SSUD12_RS02095 SM00322 K homology RNA-binding domain SSUD12_RS02095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUD12_RS02100 SM00072 Guanylate kinase homologues. SSUD12_RS02105 SM01409 SSUD12_RS02105 SSUD12_RS02110 SM00487 DEAD-like helicases superfamily SSUD12_RS02110 SM00490 helicase superfamily c-terminal domain SSUD12_RS02125 SM00331 Sigma factor PP2C-like phosphatases SSUD12_RS02125 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SSUD12_RS02130 SM00220 Serine/Threonine protein kinases, catalytic domain SSUD12_RS02130 SM00740 SSUD12_RS02130 SSUD12_RS02140 SM00387 Histidine kinase-like ATPases SSUD12_RS02145 SM00421 helix_turn_helix, Lux Regulon SSUD12_RS02145 SM00448 cheY-homologous receiver domain SSUD12_RS02155 SM00316 Ribosomal protein S1-like RNA-binding domain SSUD12_RS02170 SM00487 DEAD-like helicases superfamily SSUD12_RS02170 SM00490 helicase superfamily c-terminal domain SSUD12_RS02285 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUD12_RS02285 SM00866 SSUD12_RS02285 SSUD12_RS02300 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUD12_RS02300 SM00866 SSUD12_RS02300 SSUD12_RS02395 SM00838 Elongation factor G C-terminus SSUD12_RS02420 SM00842 Cell division protein FtsA SSUD12_RS02425 SM00864 Tubulin/FtsZ family, GTPase domain SSUD12_RS02425 SM00865 Tubulin/FtsZ family, C-terminal domain SSUD12_RS02445 SM00363 S4 RNA-binding domain SSUD12_RS02475 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02475 SM01086 C-terminal, D2-small domain, of ClpB protein SSUD12_RS02490 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02530 SM00422 helix_turn_helix, mercury resistance SSUD12_RS02580 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02685 SM00855 Phosphoglycerate mutase family SSUD12_RS02755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUD12_RS02770 SM00831 Cation transporter/ATPase, N-terminus SSUD12_RS02800 SM00937 SSUD12_RS02800 SSUD12_RS02805 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02820 SM00899 SSUD12_RS02820 SSUD12_RS02835 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02840 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02890 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SSUD12_RS02890 SM01232 SSUD12_RS02890 SSUD12_RS02915 SM00316 Ribosomal protein S1-like RNA-binding domain SSUD12_RS02915 SM00955 SSUD12_RS02915 SSUD12_RS02940 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS02960 SM00829 Enoylreductase SSUD12_RS02990 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03015 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SSUD12_RS03015 SM00474 3'-5' exonuclease SSUD12_RS03015 SM00475 5'-3' exonuclease SSUD12_RS03015 SM00482 DNA polymerase A domain SSUD12_RS03025 SM00881 CoA binding domain SSUD12_RS03055 SM00354 helix_turn _helix lactose operon repressor SSUD12_RS03085 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSUD12_RS03100 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS03105 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03110 SM00448 cheY-homologous receiver domain SSUD12_RS03110 SM00862 Transcriptional regulatory protein, C terminal SSUD12_RS03115 SM00091 PAS domain SSUD12_RS03115 SM00387 Histidine kinase-like ATPases SSUD12_RS03115 SM00388 His Kinase A (phosphoacceptor) domain SSUD12_RS03120 SM00849 Metallo-beta-lactamase superfamily SSUD12_RS03135 SM00493 SSUD12_RS03135 SSUD12_RS03155 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03200 SM00354 helix_turn _helix lactose operon repressor SSUD12_RS03220 SM00640 Glycosyl hydrolases family 32 SSUD12_RS03225 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03225 SM00843 SSUD12_RS03225 SSUD12_RS03240 SM00649 Ribosomal protein L11/L12 SSUD12_RS03350 SM00155 Phospholipase D. Active site motifs. SSUD12_RS03435 SM00646 SSUD12_RS03435 SSUD12_RS03440 SM00047 Lysozyme subfamily 2 SSUD12_RS03465 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03595 SM01133 SSUD12_RS03595 SSUD12_RS03620 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03665 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS03710 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSUD12_RS03730 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS03790 SM01329 SSUD12_RS03790 SSUD12_RS03820 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSUD12_RS03830 SM00358 Double-stranded RNA binding motif SSUD12_RS03830 SM00535 Ribonuclease III family SSUD12_RS03835 SM00968 SMC proteins Flexible Hinge Domain SSUD12_RS03850 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03850 SM00962 SRP54-type protein, GTPase domain SSUD12_RS03850 SM00963 SRP54-type protein, helical bundle domain SSUD12_RS03880 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSUD12_RS03880 SM00292 breast cancer carboxy-terminal domain SSUD12_RS03880 SM00532 Ligase N family SSUD12_RS03885 SM00046 Diacylglycerol kinase catalytic domain (presumed) SSUD12_RS03920 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS03945 SM00892 DNA/RNA non-specific endonuclease SSUD12_RS03965 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUD12_RS03965 SM00895 SSUD12_RS03965 SSUD12_RS04015 SM00873 B3/4 domain SSUD12_RS04015 SM00874 tRNA synthetase B5 domain SSUD12_RS04015 SM00896 Ferredoxin-fold anticodon binding domain SSUD12_RS04055 SM00905 Dihydroneopterin aldolase SSUD12_RS04085 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUD12_RS04095 SM01321 SSUD12_RS04095 SSUD12_RS04165 SM00904 Riboflavin kinase SSUD12_RS04210 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04215 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04230 SM00448 cheY-homologous receiver domain SSUD12_RS04230 SM00862 Transcriptional regulatory protein, C terminal SSUD12_RS04235 SM00387 Histidine kinase-like ATPases SSUD12_RS04235 SM00388 His Kinase A (phosphoacceptor) domain SSUD12_RS04240 SM00460 Transglutaminase/protease-like homologues SSUD12_RS04260 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SSUD12_RS04265 SM01133 SSUD12_RS04265 SSUD12_RS04280 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04305 SM00434 DNA Topoisomerase IV SSUD12_RS04325 SM00881 CoA binding domain SSUD12_RS04345 SM01400 SSUD12_RS04345 SSUD12_RS04350 SM01118 SSUD12_RS04350 SSUD12_RS04355 SM00954 Region found in RelA / SpoT proteins SSUD12_RS04375 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04380 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04390 SM00478 endonuclease III SSUD12_RS04395 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS04420 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04430 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04435 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS04435 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSUD12_RS04440 SM00487 DEAD-like helicases superfamily SSUD12_RS04440 SM00490 helicase superfamily c-terminal domain SSUD12_RS04450 SM01208 SSUD12_RS04450 SSUD12_RS04465 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS04465 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSUD12_RS04470 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS04470 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSUD12_RS04475 SM00642 Alpha-amylase domain SSUD12_RS04510 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSUD12_RS04530 SM00986 Uracil DNA glycosylase superfamily SSUD12_RS04530 SM00987 UreE urease accessory protein, C-terminal domain SSUD12_RS04580 SM00450 Rhodanese Homology Domain SSUD12_RS04585 SM01266 SSUD12_RS04585 SSUD12_RS04595 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SSUD12_RS04595 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SSUD12_RS04595 SM00493 SSUD12_RS04595 SSUD12_RS04685 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04705 SM00448 cheY-homologous receiver domain SSUD12_RS04705 SM00862 Transcriptional regulatory protein, C terminal SSUD12_RS04710 SM00387 Histidine kinase-like ATPases SSUD12_RS04740 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04740 SM00962 SRP54-type protein, GTPase domain SSUD12_RS04740 SM00963 SRP54-type protein, helical bundle domain SSUD12_RS04750 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUD12_RS04750 SM00866 SSUD12_RS04750 SSUD12_RS04765 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04780 SM00910 SSUD12_RS04780 SSUD12_RS04825 SM00937 SSUD12_RS04825 SSUD12_RS04840 SM00894 Excalibur calcium-binding domain SSUD12_RS04850 SM00838 Elongation factor G C-terminus SSUD12_RS04855 SM00562 SSUD12_RS04855 SSUD12_RS04865 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04865 SM00994 ClpX C4-type zinc finger SSUD12_RS04865 SM01086 C-terminal, D2-small domain, of ClpB protein SSUD12_RS04905 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS04940 SM00420 helix_turn_helix, Deoxyribose operon repressor SSUD12_RS04940 SM01134 SSUD12_RS04940 SSUD12_RS04965 SM01240 SSUD12_RS04965 SSUD12_RS04970 SM00478 endonuclease III SSUD12_RS05000 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS05065 SM01321 SSUD12_RS05065 SSUD12_RS05080 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS05085 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS05130 SM00851 MGS-like domain SSUD12_RS05130 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SSUD12_RS05130 SM01209 SSUD12_RS05130 SSUD12_RS05135 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SSUD12_RS05160 SM00363 S4 RNA-binding domain SSUD12_RS05305 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS05345 SM00981 SSUD12_RS05345 SSUD12_RS05375 SM00316 Ribosomal protein S1-like RNA-binding domain SSUD12_RS05405 SM00434 DNA Topoisomerase IV SSUD12_RS05415 SM00387 Histidine kinase-like ATPases SSUD12_RS05415 SM00433 TopoisomeraseII SSUD12_RS05420 SM01207 SSUD12_RS05420 SSUD12_RS05455 SM00465 GIY-YIG type nucleases (URI domain) SSUD12_RS05460 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS05560 SM01130 SSUD12_RS05560 SSUD12_RS05565 SM00859 Semialdehyde dehydrogenase, NAD binding domain SSUD12_RS05610 SM00420 helix_turn_helix, Deoxyribose operon repressor SSUD12_RS05610 SM01134 SSUD12_RS05610 SSUD12_RS05645 SM01321 SSUD12_RS05645 SSUD12_RS05795 SM00116 Domain in cystathionine beta-synthase and other proteins. SSUD12_RS05825 SM00857 Resolvase, N terminal domain SSUD12_RS05840 SM00257 Lysin motif SSUD12_RS05840 SM00646 SSUD12_RS05840 SSUD12_RS05965 SM00470 ParB-like nuclease domain SSUD12_RS05975 SM00507 HNH nucleases SSUD12_RS05995 SM00487 DEAD-like helicases superfamily SSUD12_RS06000 SM00990 SSUD12_RS06000 SSUD12_RS06005 SM00885 D5 N terminal like SSUD12_RS06005 SM00942 Primase C terminal 1 (PriCT-1) SSUD12_RS06030 SM00482 DNA polymerase A domain SSUD12_RS06070 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS06095 SM01133 SSUD12_RS06095 SSUD12_RS06125 SM00857 Resolvase, N terminal domain SSUD12_RS06140 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSUD12_RS06145 SM00563 Phosphate acyltransferases SSUD12_RS06155 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS06180 SM00363 S4 RNA-binding domain SSUD12_RS06245 SM00460 Transglutaminase/protease-like homologues SSUD12_RS06315 SM00100 Cyclic nucleotide-monophosphate binding domain SSUD12_RS06315 SM00419 helix_turn_helix, cAMP Regulatory protein SSUD12_RS06365 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUD12_RS06400 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS06415 SM00448 cheY-homologous receiver domain SSUD12_RS06415 SM00850 LytTr DNA-binding domain SSUD12_RS06425 SM00850 LytTr DNA-binding domain SSUD12_RS06475 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS06495 SM00400 zinc finger SSUD12_RS06505 SM00421 helix_turn_helix, Lux Regulon SSUD12_RS06505 SM00448 cheY-homologous receiver domain SSUD12_RS06525 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS06530 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS06535 SM01260 SSUD12_RS06535 SSUD12_RS06560 SM00470 ParB-like nuclease domain SSUD12_RS06590 SM00889 Elongation factor G, domain IV SSUD12_RS06600 SM00487 DEAD-like helicases superfamily SSUD12_RS06715 SM00650 Ribosomal RNA adenine dimethylases SSUD12_RS06840 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUD12_RS06870 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SSUD12_RS06875 SM00479 SSUD12_RS06875 SSUD12_RS06875 SM00487 DEAD-like helicases superfamily SSUD12_RS06875 SM00491 SSUD12_RS06875 SSUD12_RS06880 SM00849 Metallo-beta-lactamase superfamily SSUD12_RS06890 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS06890 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSUD12_RS06895 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS06940 SM00481 DNA polymerase alpha chain like domain SSUD12_RS06945 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSUD12_RS06950 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07020 SM00400 zinc finger SSUD12_RS07020 SM00493 SSUD12_RS07020 SSUD12_RS07065 SM00729 Elongator protein 3, MiaB family, Radical SAM SSUD12_RS07130 SM00487 DEAD-like helicases superfamily SSUD12_RS07150 SM00244 prohibitin homologues SSUD12_RS07165 SM00986 Uracil DNA glycosylase superfamily SSUD12_RS07165 SM00987 UreE urease accessory protein, C-terminal domain SSUD12_RS07195 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07235 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07245 SM00235 Zinc-dependent metalloprotease SSUD12_RS07260 SM00849 Metallo-beta-lactamase superfamily SSUD12_RS07275 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07305 SM00028 Tetratricopeptide repeats SSUD12_RS07330 SM01192 SSUD12_RS07330 SSUD12_RS07330 SM01193 SSUD12_RS07330 SSUD12_RS07360 SM00387 Histidine kinase-like ATPases SSUD12_RS07360 SM00433 TopoisomeraseII SSUD12_RS07410 SM00830 Chorismate mutase type II SSUD12_RS07450 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07455 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07490 SM00642 Alpha-amylase domain SSUD12_RS07495 SM00642 Alpha-amylase domain SSUD12_RS07520 SM00342 helix_turn_helix, arabinose operon control protein SSUD12_RS07585 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSUD12_RS07590 SM00487 DEAD-like helicases superfamily SSUD12_RS07590 SM00490 helicase superfamily c-terminal domain SSUD12_RS07605 SM00365 Leucine-rich repeat, SDS22-like subfamily SSUD12_RS07645 SM01022 SSUD12_RS07645 SSUD12_RS07690 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07695 SM00387 Histidine kinase-like ATPases SSUD12_RS07700 SM00448 cheY-homologous receiver domain SSUD12_RS07700 SM00862 Transcriptional regulatory protein, C terminal SSUD12_RS07725 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07730 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUD12_RS07770 SM00650 Ribosomal RNA adenine dimethylases SSUD12_RS07785 SM00731 SprT homologues. SSUD12_RS07790 SM00316 Ribosomal protein S1-like RNA-binding domain SSUD12_RS07790 SM00732 Likely ribonuclease with RNase H fold. SSUD12_RS07870 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS07900 SM00487 DEAD-like helicases superfamily SSUD12_RS07900 SM00490 helicase superfamily c-terminal domain SSUD12_RS07915 SM00855 Phosphoglycerate mutase family SSUD12_RS07955 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS07970 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS07995 SM00411 bacterial (prokaryotic) histone like domain SSUD12_RS08025 SM00363 S4 RNA-binding domain SSUD12_RS08065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SSUD12_RS08065 SM00387 Histidine kinase-like ATPases SSUD12_RS08065 SM00388 His Kinase A (phosphoacceptor) domain SSUD12_RS08070 SM00448 cheY-homologous receiver domain SSUD12_RS08070 SM00862 Transcriptional regulatory protein, C terminal SSUD12_RS08085 SM00327 von Willebrand factor (vWF) type A domain SSUD12_RS08095 SM01131 SSUD12_RS08095 SSUD12_RS08120 SM00849 Metallo-beta-lactamase superfamily SSUD12_RS08145 SM01091 Transporter associated domain SSUD12_RS08150 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS08190 SM01321 SSUD12_RS08190 SSUD12_RS08235 SM00450 Rhodanese Homology Domain SSUD12_RS08245 SM00421 helix_turn_helix, Lux Regulon SSUD12_RS08245 SM00448 cheY-homologous receiver domain SSUD12_RS08260 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS08275 SM00226 Low molecular weight phosphatase family SSUD12_RS08280 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. SSUD12_RS08290 SM00014 Acid phosphatase homologues SSUD12_RS08310 SM01234 SSUD12_RS08310 SSUD12_RS08315 SM00363 S4 RNA-binding domain SSUD12_RS08375 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUD12_RS08380 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSUD12_RS08420 SM00487 DEAD-like helicases superfamily SSUD12_RS08420 SM00490 helicase superfamily c-terminal domain SSUD12_RS08465 SM00448 cheY-homologous receiver domain SSUD12_RS08465 SM00862 Transcriptional regulatory protein, C terminal SSUD12_RS08470 SM01350 SSUD12_RS08470 SSUD12_RS08490 SM00487 DEAD-like helicases superfamily SSUD12_RS08490 SM00490 helicase superfamily c-terminal domain SSUD12_RS08510 SM00740 SSUD12_RS08510 SSUD12_RS08525 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS08565 SM00900 SSUD12_RS08565 SSUD12_RS08635 SM00873 B3/4 domain SSUD12_RS08645 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS08645 SM00930 SSUD12_RS08645 SSUD12_RS08745 SM00878 Biotin carboxylase C-terminal domain SSUD12_RS08760 SM00825 Beta-ketoacyl synthase SSUD12_RS08765 SM00822 SSUD12_RS08765 SSUD12_RS08770 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SSUD12_RS08790 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUD12_RS08815 SM01005 Alanine racemase, C-terminal domain SSUD12_RS08825 SM00957 SecA DEAD-like domain SSUD12_RS08825 SM00958 SecA preprotein cross-linking domain SSUD12_RS08845 SM00640 Glycosyl hydrolases family 32 SSUD12_RS08850 SM00354 helix_turn _helix lactose operon repressor SSUD12_RS08865 SM00841 Elongation factor P, C-terminal SSUD12_RS08865 SM01185 SSUD12_RS08865 SSUD12_RS08890 SM01208 SSUD12_RS08890 SSUD12_RS08895 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS08940 SM00855 Phosphoglycerate mutase family SSUD12_RS08945 SM00855 Phosphoglycerate mutase family SSUD12_RS08960 SM00342 helix_turn_helix, arabinose operon control protein SSUD12_RS08975 SM01061 CAT RNA binding domain SSUD12_RS08995 SM00861 Transketolase, pyrimidine binding domain SSUD12_RS09040 SM00316 Ribosomal protein S1-like RNA-binding domain SSUD12_RS09040 SM00322 K homology RNA-binding domain SSUD12_RS09065 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09095 SM01120 SSUD12_RS09095 SSUD12_RS09095 SM01121 SSUD12_RS09095 SSUD12_RS09115 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09120 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09130 SM00936 Penicillin-binding protein 5, C-terminal domain SSUD12_RS09155 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09175 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS09180 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09190 SM00244 prohibitin homologues SSUD12_RS09255 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS09280 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSUD12_RS09305 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09315 SM00342 helix_turn_helix, arabinose operon control protein SSUD12_RS09315 SM00448 cheY-homologous receiver domain SSUD12_RS09355 SM00872 Alpha mannosidase, middle domain SSUD12_RS09360 SM01149 SSUD12_RS09360 SSUD12_RS09370 SM01208 SSUD12_RS09370 SSUD12_RS09380 SM00840 SSUD12_RS09380 SSUD12_RS09400 SM00316 Ribosomal protein S1-like RNA-binding domain SSUD12_RS09400 SM00322 K homology RNA-binding domain SSUD12_RS09405 SM01387 SSUD12_RS09405 SSUD12_RS09425 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS09445 SM00363 S4 RNA-binding domain SSUD12_RS09480 SM01329 SSUD12_RS09480 SSUD12_RS09485 SM00917 LeuA allosteric (dimerisation) domain SSUD12_RS09510 SM00479 SSUD12_RS09510 SSUD12_RS09510 SM00481 DNA polymerase alpha chain like domain SSUD12_RS09530 SM01120 SSUD12_RS09530 SSUD12_RS09565 SM01323 SSUD12_RS09565 SSUD12_RS09570 SM00788 Adenylosuccinate synthetase SSUD12_RS09600 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09600 SM01086 C-terminal, D2-small domain, of ClpB protein SSUD12_RS09645 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SSUD12_RS09645 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSUD12_RS09735 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SSUD12_RS09755 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09760 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09780 SM00650 Ribosomal RNA adenine dimethylases SSUD12_RS09810 SM00493 SSUD12_RS09810 SSUD12_RS09825 SM00393 Putative single-stranded nucleic acids-binding domain SSUD12_RS09825 SM01245 SSUD12_RS09825 SSUD12_RS09895 SM00850 LytTr DNA-binding domain SSUD12_RS09905 SM00947 Carbonic anhydrase SSUD12_RS09910 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09915 SM00855 Phosphoglycerate mutase family SSUD12_RS09930 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS09945 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09950 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09955 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS09960 SM00347 helix_turn_helix multiple antibiotic resistance protein SSUD12_RS10020 SM00861 Transketolase, pyrimidine binding domain SSUD12_RS10040 SM01007 Class II Aldolase and Adducin N-terminal domain SSUD12_RS10050 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSUD12_RS10070 SM00642 Alpha-amylase domain SSUD12_RS10105 SM00354 helix_turn _helix lactose operon repressor SSUD12_RS10110 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS10120 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS10195 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS10210 SM00529 Helix-turn-helix diphteria tox regulatory element SSUD12_RS10210 SM00899 SSUD12_RS10210 SSUD12_RS10235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSUD12_RS10235 SM00954 Region found in RelA / SpoT proteins SSUD12_RS10265 SM01022 SSUD12_RS10265 SSUD12_RS10280 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS10320 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS10330 SM00062 Bacterial periplasmic substrate-binding proteins SSUD12_RS10345 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSUD12_RS10345 SM00534 ATPase domain of DNA mismatch repair MUTS family SSUD12_RS10355 SM00836 DALR anticodon binding domain SSUD12_RS10355 SM01016 Arginyl tRNA synthetase N terminal dom SSUD12_RS10360 SM00287 Bacterial SH3 domain homologues SSUD12_RS10400 SM00354 helix_turn _helix lactose operon repressor SSUD12_RS10405 SM00642 Alpha-amylase domain SSUD12_RS10455 SM00363 S4 RNA-binding domain SSUD12_RS10455 SM01390 SSUD12_RS10455 SSUD12_RS10485 SM01228 SSUD12_RS10485 SSUD12_RS10535 SM00448 cheY-homologous receiver domain SSUD12_RS10535 SM00862 Transcriptional regulatory protein, C terminal SSUD12_RS10540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SSUD12_RS10540 SM00387 Histidine kinase-like ATPases SSUD12_RS10540 SM00388 His Kinase A (phosphoacceptor) domain SSUD12_RS10545 SM00257 Lysin motif SSUD12_RS10555 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS10560 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS10630 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS10640 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS10645 SM01252 SSUD12_RS10645 SSUD12_RS10665 SM00116 Domain in cystathionine beta-synthase and other proteins. SSUD12_RS10665 SM01240 SSUD12_RS10665 SSUD12_RS10680 SM00382 ATPases associated with a variety of cellular activities SSUD12_RS10695 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS10760 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SSUD12_RS10765 SM00470 ParB-like nuclease domain SSUD12_RS10775 SM01208 SSUD12_RS10775 SSUD12_RS10795 SM00530 Helix-turn-helix XRE-family like proteins SSUD12_RS10810 SM00382 ATPases associated with a variety of cellular activities