CR542_RS00005 SM00382 ATPases associated with a variety of cellular activities CR542_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CR542_RS00010 SM00480 DNA polymerase III beta subunit CR542_RS00025 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS00040 SM00487 DEAD-like helicases superfamily CR542_RS00040 SM00490 helicase superfamily c-terminal domain CR542_RS00040 SM00982 CR542_RS00040 CR542_RS00040 SM01058 CarD-like/TRCF domain CR542_RS00045 SM00363 S4 RNA-binding domain CR542_RS00065 SM00977 TilS substrate C-terminal domain CR542_RS00075 SM00382 ATPases associated with a variety of cellular activities CR542_RS00200 SM01400 CR542_RS00200 CR542_RS00250 SM00798 AICARFT/IMPCHase bienzyme CR542_RS00250 SM00851 MGS-like domain CR542_RS00275 SM01209 CR542_RS00275 CR542_RS00275 SM01210 CR542_RS00275 CR542_RS00280 SM01001 AIR carboxylase CR542_RS00295 SM00998 Adenylosuccinate lyase C-terminus CR542_RS00300 SM00382 ATPases associated with a variety of cellular activities CR542_RS00325 SM00382 ATPases associated with a variety of cellular activities CR542_RS00335 SM00382 ATPases associated with a variety of cellular activities CR542_RS00340 SM00382 ATPases associated with a variety of cellular activities CR542_RS00355 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS00375 SM00853 MutL C terminal dimerisation domain CR542_RS00375 SM01340 CR542_RS00375 CR542_RS00380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CR542_RS00390 SM00852 Probable molybdopterin binding domain CR542_RS00395 SM00382 ATPases associated with a variety of cellular activities CR542_RS00410 SM00732 Likely ribonuclease with RNase H fold. CR542_RS00430 SM01403 CR542_RS00430 CR542_RS00450 SM01382 CR542_RS00450 CR542_RS00450 SM01383 CR542_RS00450 CR542_RS00465 SM00322 K homology RNA-binding domain CR542_RS00485 SM01374 CR542_RS00485 CR542_RS00490 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CR542_RS00555 SM00316 Ribosomal protein S1-like RNA-binding domain CR542_RS00575 SM00662 RNA polymerases D CR542_RS00735 SM00347 helix_turn_helix multiple antibiotic resistance protein CR542_RS00740 SM00382 ATPases associated with a variety of cellular activities CR542_RS00770 SM00363 S4 RNA-binding domain CR542_RS00785 SM00663 RNA polymerase I subunit A N-terminus CR542_RS00800 SM00382 ATPases associated with a variety of cellular activities CR542_RS00900 SM00883 Chaperonin 10 Kd subunit CR542_RS00920 SM00838 Elongation factor G C-terminus CR542_RS00920 SM00889 Elongation factor G, domain IV CR542_RS00930 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CR542_RS00945 SM00422 helix_turn_helix, mercury resistance CR542_RS00950 SM01230 CR542_RS00950 CR542_RS00955 SM00849 Metallo-beta-lactamase superfamily CR542_RS00980 SM00342 helix_turn_helix, arabinose operon control protein CR542_RS01025 SM00382 ATPases associated with a variety of cellular activities CR542_RS01070 SM00861 Transketolase, pyrimidine binding domain CR542_RS01090 SM01208 CR542_RS01090 CR542_RS01100 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CR542_RS01100 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal CR542_RS01120 SM00257 Lysin motif CR542_RS01150 SM00478 endonuclease III CR542_RS01175 SM00710 Parallel beta-helix repeats CR542_RS01190 SM00382 ATPases associated with a variety of cellular activities CR542_RS01195 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS01245 SM00257 Lysin motif CR542_RS01250 SM00642 Alpha-amylase domain CR542_RS01260 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS01260 SM00866 CR542_RS01260 CR542_RS01280 SM00463 Small MutS-related domain CR542_RS01280 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CR542_RS01280 SM00534 ATPase domain of DNA mismatch repair MUTS family CR542_RS01410 SM00382 ATPases associated with a variety of cellular activities CR542_RS01420 SM00857 Resolvase, N terminal domain CR542_RS01450 SM00382 ATPases associated with a variety of cellular activities CR542_RS01460 SM00857 Resolvase, N terminal domain CR542_RS01490 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CR542_RS01500 SM00854 Bacterial capsule synthesis protein PGA_cap CR542_RS01520 SM00382 ATPases associated with a variety of cellular activities CR542_RS01625 SM00829 Enoylreductase CR542_RS01650 SM00382 ATPases associated with a variety of cellular activities CR542_RS01685 SM00382 ATPases associated with a variety of cellular activities CR542_RS01690 SM00382 ATPases associated with a variety of cellular activities CR542_RS01705 SM00855 Phosphoglycerate mutase family CR542_RS01725 SM00271 DnaJ molecular chaperone homology domain CR542_RS01745 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS01765 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS01815 SM00829 Enoylreductase CR542_RS01935 SM00487 DEAD-like helicases superfamily CR542_RS01935 SM00490 helicase superfamily c-terminal domain CR542_RS01945 SM00870 CR542_RS01945 CR542_RS02005 SM00845 GatB domain CR542_RS02015 SM00354 helix_turn _helix lactose operon repressor CR542_RS02065 SM01103 CR542_RS02065 CR542_RS02075 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CR542_RS02130 SM00382 ATPases associated with a variety of cellular activities CR542_RS02130 SM01086 C-terminal, D2-small domain, of ClpB protein CR542_RS02145 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS02145 SM00866 CR542_RS02145 CR542_RS02190 SM00450 Rhodanese Homology Domain CR542_RS02200 SM00382 ATPases associated with a variety of cellular activities CR542_RS02210 SM00357 Cold shock protein domain CR542_RS02245 SM00981 CR542_RS02245 CR542_RS02260 SM00322 K homology RNA-binding domain CR542_RS02260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CR542_RS02265 SM00072 Guanylate kinase homologues. CR542_RS02270 SM01409 CR542_RS02270 CR542_RS02280 SM00487 DEAD-like helicases superfamily CR542_RS02280 SM00490 helicase superfamily c-terminal domain CR542_RS02295 SM00331 Sigma factor PP2C-like phosphatases CR542_RS02295 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CR542_RS02300 SM00220 Serine/Threonine protein kinases, catalytic domain CR542_RS02300 SM00740 CR542_RS02300 CR542_RS02310 SM00387 Histidine kinase-like ATPases CR542_RS02315 SM00421 helix_turn_helix, Lux Regulon CR542_RS02315 SM00448 cheY-homologous receiver domain CR542_RS02325 SM00316 Ribosomal protein S1-like RNA-binding domain CR542_RS02350 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS02355 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS02420 SM00942 Primase C terminal 1 (PriCT-1) CR542_RS02420 SM00943 Bifunctional DNA primase/polymerase, N-terminal CR542_RS02450 SM00507 HNH nucleases CR542_RS02485 SM00849 Metallo-beta-lactamase superfamily CR542_RS02490 SM00479 CR542_RS02490 CR542_RS02490 SM00487 DEAD-like helicases superfamily CR542_RS02490 SM00491 CR542_RS02490 CR542_RS02495 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CR542_RS02520 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS02615 SM00858 CR542_RS02615 CR542_RS02730 SM00347 helix_turn_helix multiple antibiotic resistance protein CR542_RS02795 SM00100 Cyclic nucleotide-monophosphate binding domain CR542_RS02795 SM00419 helix_turn_helix, cAMP Regulatory protein CR542_RS02905 SM00363 S4 RNA-binding domain CR542_RS02930 SM00382 ATPases associated with a variety of cellular activities CR542_RS02940 SM00563 Phosphate acyltransferases CR542_RS02945 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CR542_RS02950 SM00849 Metallo-beta-lactamase superfamily CR542_RS02955 SM00116 Domain in cystathionine beta-synthase and other proteins. CR542_RS03080 SM00974 CR542_RS03080 CR542_RS03165 SM00420 helix_turn_helix, Deoxyribose operon repressor CR542_RS03165 SM01134 CR542_RS03165 CR542_RS03210 SM00859 Semialdehyde dehydrogenase, NAD binding domain CR542_RS03215 SM01130 CR542_RS03215 CR542_RS03240 SM00487 DEAD-like helicases superfamily CR542_RS03240 SM00490 helicase superfamily c-terminal domain CR542_RS03340 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS03340 SM00866 CR542_RS03340 CR542_RS03345 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS03345 SM00866 CR542_RS03345 CR542_RS03420 SM00487 DEAD-like helicases superfamily CR542_RS03420 SM00490 helicase superfamily c-terminal domain CR542_RS03440 SM00838 Elongation factor G C-terminus CR542_RS03500 SM00842 Cell division protein FtsA CR542_RS03505 SM00864 Tubulin/FtsZ family, GTPase domain CR542_RS03505 SM00865 Tubulin/FtsZ family, C-terminal domain CR542_RS03525 SM00363 S4 RNA-binding domain CR542_RS03560 SM00382 ATPases associated with a variety of cellular activities CR542_RS03560 SM01086 C-terminal, D2-small domain, of ClpB protein CR542_RS03575 SM00382 ATPases associated with a variety of cellular activities CR542_RS03620 SM00422 helix_turn_helix, mercury resistance CR542_RS03680 SM00382 ATPases associated with a variety of cellular activities CR542_RS03720 SM00855 Phosphoglycerate mutase family CR542_RS03790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CR542_RS03805 SM00831 Cation transporter/ATPase, N-terminus CR542_RS03835 SM00382 ATPases associated with a variety of cellular activities CR542_RS03855 SM00899 CR542_RS03855 CR542_RS03865 SM00382 ATPases associated with a variety of cellular activities CR542_RS03870 SM00382 ATPases associated with a variety of cellular activities CR542_RS03915 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CR542_RS03915 SM01232 CR542_RS03915 CR542_RS03945 SM00316 Ribosomal protein S1-like RNA-binding domain CR542_RS03945 SM00955 CR542_RS03945 CR542_RS03955 SM00829 Enoylreductase CR542_RS03985 SM00382 ATPases associated with a variety of cellular activities CR542_RS04035 SM00342 helix_turn_helix, arabinose operon control protein CR542_RS04060 SM00642 Alpha-amylase domain CR542_RS04065 SM00642 Alpha-amylase domain CR542_RS04100 SM00382 ATPases associated with a variety of cellular activities CR542_RS04105 SM00382 ATPases associated with a variety of cellular activities CR542_RS04145 SM00830 Chorismate mutase type II CR542_RS04225 SM00631 CR542_RS04225 CR542_RS04230 SM00155 Phospholipase D. Active site motifs. CR542_RS04310 SM00646 CR542_RS04310 CR542_RS04315 SM00047 Lysozyme subfamily 2 CR542_RS04340 SM00382 ATPases associated with a variety of cellular activities CR542_RS04570 SM00287 Bacterial SH3 domain homologues CR542_RS04640 SM00382 ATPases associated with a variety of cellular activities CR542_RS04645 SM00465 GIY-YIG type nucleases (URI domain) CR542_RS04680 SM01207 CR542_RS04680 CR542_RS04685 SM00387 Histidine kinase-like ATPases CR542_RS04685 SM00433 TopoisomeraseII CR542_RS04705 SM00434 DNA Topoisomerase IV CR542_RS04740 SM00316 Ribosomal protein S1-like RNA-binding domain CR542_RS04770 SM00981 CR542_RS04770 CR542_RS04805 SM00363 S4 RNA-binding domain CR542_RS04830 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CR542_RS04835 SM00851 MGS-like domain CR542_RS04835 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CR542_RS04835 SM01209 CR542_RS04835 CR542_RS04865 SM00382 ATPases associated with a variety of cellular activities CR542_RS04870 SM00382 ATPases associated with a variety of cellular activities CR542_RS04900 SM00382 ATPases associated with a variety of cellular activities CR542_RS04940 SM00478 endonuclease III CR542_RS04945 SM01240 CR542_RS04945 CR542_RS04970 SM00420 helix_turn_helix, Deoxyribose operon repressor CR542_RS04970 SM01134 CR542_RS04970 CR542_RS05005 SM00382 ATPases associated with a variety of cellular activities CR542_RS05045 SM00382 ATPases associated with a variety of cellular activities CR542_RS05045 SM00994 ClpX C4-type zinc finger CR542_RS05045 SM01086 C-terminal, D2-small domain, of ClpB protein CR542_RS05055 SM00562 CR542_RS05055 CR542_RS05060 SM00838 Elongation factor G C-terminus CR542_RS05070 SM00894 Excalibur calcium-binding domain CR542_RS05085 SM00937 CR542_RS05085 CR542_RS05130 SM00910 CR542_RS05130 CR542_RS05145 SM00382 ATPases associated with a variety of cellular activities CR542_RS05160 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS05160 SM00866 CR542_RS05160 CR542_RS05170 SM00382 ATPases associated with a variety of cellular activities CR542_RS05170 SM00962 SRP54-type protein, GTPase domain CR542_RS05170 SM00963 SRP54-type protein, helical bundle domain CR542_RS05200 SM00387 Histidine kinase-like ATPases CR542_RS05205 SM00448 cheY-homologous receiver domain CR542_RS05205 SM00862 Transcriptional regulatory protein, C terminal CR542_RS05225 SM00382 ATPases associated with a variety of cellular activities CR542_RS05265 SM00342 helix_turn_helix, arabinose operon control protein CR542_RS05265 SM00871 Bacterial transcription activator, effector binding domain CR542_RS05295 SM00776 CR542_RS05295 CR542_RS05310 SM00812 Alpha-L-fucosidase CR542_RS05330 SM01007 Class II Aldolase and Adducin N-terminal domain CR542_RS05345 SM00420 helix_turn_helix, Deoxyribose operon repressor CR542_RS05345 SM01134 CR542_RS05345 CR542_RS05365 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS05395 SM00487 DEAD-like helicases superfamily CR542_RS05395 SM00490 helicase superfamily c-terminal domain CR542_RS05485 SM01208 CR542_RS05485 CR542_RS05505 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS05530 SM01133 CR542_RS05530 CR542_RS05555 SM00420 helix_turn_helix, Deoxyribose operon repressor CR542_RS05555 SM01134 CR542_RS05555 CR542_RS05610 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS05655 SM00857 Resolvase, N terminal domain CR542_RS05670 SM00470 ParB-like nuclease domain CR542_RS05715 SM00889 Elongation factor G, domain IV CR542_RS05755 SM00487 DEAD-like helicases superfamily CR542_RS05885 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CR542_RS05885 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CR542_RS05885 SM00493 CR542_RS05885 CR542_RS05895 SM01266 CR542_RS05895 CR542_RS05905 SM00450 Rhodanese Homology Domain CR542_RS05910 SM00450 Rhodanese Homology Domain CR542_RS05960 SM00986 Uracil DNA glycosylase superfamily CR542_RS05960 SM00987 UreE urease accessory protein, C-terminal domain CR542_RS05980 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CR542_RS06015 SM00642 Alpha-amylase domain CR542_RS06020 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS06020 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CR542_RS06025 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS06025 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CR542_RS06055 SM00487 DEAD-like helicases superfamily CR542_RS06055 SM00490 helicase superfamily c-terminal domain CR542_RS06065 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS06065 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CR542_RS06070 SM00382 ATPases associated with a variety of cellular activities CR542_RS06080 SM00382 ATPases associated with a variety of cellular activities CR542_RS06120 SM01061 CAT RNA binding domain CR542_RS06125 SM01133 CR542_RS06125 CR542_RS06150 SM00420 helix_turn_helix, Deoxyribose operon repressor CR542_RS06150 SM01134 CR542_RS06150 CR542_RS06180 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS06185 SM00478 endonuclease III CR542_RS06195 SM00382 ATPases associated with a variety of cellular activities CR542_RS06200 SM00382 ATPases associated with a variety of cellular activities CR542_RS06220 SM00954 Region found in RelA / SpoT proteins CR542_RS06225 SM01118 CR542_RS06225 CR542_RS06230 SM01400 CR542_RS06230 CR542_RS06250 SM00881 CoA binding domain CR542_RS06270 SM00434 DNA Topoisomerase IV CR542_RS06305 SM00382 ATPases associated with a variety of cellular activities CR542_RS06320 SM01133 CR542_RS06320 CR542_RS06325 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CR542_RS06345 SM00460 Transglutaminase/protease-like homologues CR542_RS06355 SM00387 Histidine kinase-like ATPases CR542_RS06355 SM00388 His Kinase A (phosphoacceptor) domain CR542_RS06360 SM00448 cheY-homologous receiver domain CR542_RS06360 SM00862 Transcriptional regulatory protein, C terminal CR542_RS06380 SM00382 ATPases associated with a variety of cellular activities CR542_RS06385 SM00382 ATPases associated with a variety of cellular activities CR542_RS06430 SM00904 Riboflavin kinase CR542_RS06515 SM00347 helix_turn_helix multiple antibiotic resistance protein CR542_RS06545 SM00905 Dihydroneopterin aldolase CR542_RS06585 SM00873 B3/4 domain CR542_RS06585 SM00874 tRNA synthetase B5 domain CR542_RS06585 SM00896 Ferredoxin-fold anticodon binding domain CR542_RS06635 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS06635 SM00895 CR542_RS06635 CR542_RS06655 SM00892 DNA/RNA non-specific endonuclease CR542_RS06680 SM00382 ATPases associated with a variety of cellular activities CR542_RS06715 SM00046 Diacylglycerol kinase catalytic domain (presumed) CR542_RS06720 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CR542_RS06720 SM00292 breast cancer carboxy-terminal domain CR542_RS06720 SM00532 Ligase N family CR542_RS06750 SM00382 ATPases associated with a variety of cellular activities CR542_RS06750 SM00962 SRP54-type protein, GTPase domain CR542_RS06750 SM00963 SRP54-type protein, helical bundle domain CR542_RS06765 SM00968 SMC proteins Flexible Hinge Domain CR542_RS06770 SM00358 Double-stranded RNA binding motif CR542_RS06770 SM00535 Ribonuclease III family CR542_RS06785 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CR542_RS06810 SM01329 CR542_RS06810 CR542_RS06840 SM00354 helix_turn _helix lactose operon repressor CR542_RS06860 SM01323 CR542_RS06860 CR542_RS06940 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS06960 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CR542_RS07040 SM00382 ATPases associated with a variety of cellular activities CR542_RS07065 SM01133 CR542_RS07065 CR542_RS07080 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS07085 SM00382 ATPases associated with a variety of cellular activities CR542_RS07145 SM00481 DNA polymerase alpha chain like domain CR542_RS07150 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS07155 SM00382 ATPases associated with a variety of cellular activities CR542_RS07210 SM00400 zinc finger CR542_RS07210 SM00493 CR542_RS07210 CR542_RS07255 SM00729 Elongator protein 3, MiaB family, Radical SAM CR542_RS07340 SM00244 prohibitin homologues CR542_RS07355 SM00986 Uracil DNA glycosylase superfamily CR542_RS07355 SM00987 UreE urease accessory protein, C-terminal domain CR542_RS07395 SM00382 ATPases associated with a variety of cellular activities CR542_RS07435 SM00382 ATPases associated with a variety of cellular activities CR542_RS07445 SM00235 Zinc-dependent metalloprotease CR542_RS07455 SM00849 Metallo-beta-lactamase superfamily CR542_RS07470 SM00382 ATPases associated with a variety of cellular activities CR542_RS07495 SM01061 CAT RNA binding domain CR542_RS07510 SM00028 Tetratricopeptide repeats CR542_RS07575 SM00382 ATPases associated with a variety of cellular activities CR542_RS07615 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS07625 SM01192 CR542_RS07625 CR542_RS07625 SM01193 CR542_RS07625 CR542_RS07660 SM00387 Histidine kinase-like ATPases CR542_RS07660 SM00433 TopoisomeraseII CR542_RS07735 SM00649 Ribosomal protein L11/L12 CR542_RS07750 SM00382 ATPases associated with a variety of cellular activities CR542_RS07750 SM00843 CR542_RS07750 CR542_RS07755 SM00640 Glycosyl hydrolases family 32 CR542_RS07780 SM00354 helix_turn _helix lactose operon repressor CR542_RS07835 SM00382 ATPases associated with a variety of cellular activities CR542_RS07855 SM00493 CR542_RS07855 CR542_RS07880 SM00849 Metallo-beta-lactamase superfamily CR542_RS07885 SM00091 PAS domain CR542_RS07885 SM00387 Histidine kinase-like ATPases CR542_RS07885 SM00388 His Kinase A (phosphoacceptor) domain CR542_RS07890 SM00448 cheY-homologous receiver domain CR542_RS07890 SM00862 Transcriptional regulatory protein, C terminal CR542_RS07895 SM00382 ATPases associated with a variety of cellular activities CR542_RS07900 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS07915 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CR542_RS07945 SM00354 helix_turn _helix lactose operon repressor CR542_RS07970 SM00881 CoA binding domain CR542_RS07980 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CR542_RS07980 SM00474 3'-5' exonuclease CR542_RS07980 SM00475 5'-3' exonuclease CR542_RS07980 SM00482 DNA polymerase A domain CR542_RS08025 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CR542_RS08030 SM00487 DEAD-like helicases superfamily CR542_RS08030 SM00490 helicase superfamily c-terminal domain CR542_RS08050 SM00365 Leucine-rich repeat, SDS22-like subfamily CR542_RS08095 SM01022 CR542_RS08095 CR542_RS08135 SM00382 ATPases associated with a variety of cellular activities CR542_RS08145 SM00448 cheY-homologous receiver domain CR542_RS08145 SM00862 Transcriptional regulatory protein, C terminal CR542_RS08170 SM00382 ATPases associated with a variety of cellular activities CR542_RS08175 SM00347 helix_turn_helix multiple antibiotic resistance protein CR542_RS08215 SM00731 SprT homologues. CR542_RS08220 SM00316 Ribosomal protein S1-like RNA-binding domain CR542_RS08220 SM00732 Likely ribonuclease with RNase H fold. CR542_RS08235 SM00327 von Willebrand factor (vWF) type A domain CR542_RS08325 SM00382 ATPases associated with a variety of cellular activities CR542_RS08355 SM00487 DEAD-like helicases superfamily CR542_RS08355 SM00490 helicase superfamily c-terminal domain CR542_RS08370 SM00855 Phosphoglycerate mutase family CR542_RS08405 SM00411 bacterial (prokaryotic) histone like domain CR542_RS08435 SM00363 S4 RNA-binding domain CR542_RS08465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CR542_RS08465 SM00387 Histidine kinase-like ATPases CR542_RS08465 SM00388 His Kinase A (phosphoacceptor) domain CR542_RS08470 SM00448 cheY-homologous receiver domain CR542_RS08470 SM00862 Transcriptional regulatory protein, C terminal CR542_RS08495 SM01131 CR542_RS08495 CR542_RS08510 SM01091 Transporter associated domain CR542_RS08515 SM00382 ATPases associated with a variety of cellular activities CR542_RS08575 SM00450 Rhodanese Homology Domain CR542_RS08585 SM00421 helix_turn_helix, Lux Regulon CR542_RS08585 SM00448 cheY-homologous receiver domain CR542_RS08600 SM00382 ATPases associated with a variety of cellular activities CR542_RS08620 SM00226 Low molecular weight phosphatase family CR542_RS08625 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. CR542_RS08635 SM00014 Acid phosphatase homologues CR542_RS08655 SM01234 CR542_RS08655 CR542_RS08660 SM00363 S4 RNA-binding domain CR542_RS08725 SM00967 RNA 2'-O ribose methyltransferase substrate binding CR542_RS08765 SM00487 DEAD-like helicases superfamily CR542_RS08765 SM00490 helicase superfamily c-terminal domain CR542_RS08810 SM00448 cheY-homologous receiver domain CR542_RS08810 SM00862 Transcriptional regulatory protein, C terminal CR542_RS08815 SM01350 CR542_RS08815 CR542_RS08835 SM00487 DEAD-like helicases superfamily CR542_RS08835 SM00490 helicase superfamily c-terminal domain CR542_RS08860 SM00740 CR542_RS08860 CR542_RS08875 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS08925 SM00900 CR542_RS08925 CR542_RS08990 SM00873 B3/4 domain CR542_RS09000 SM00382 ATPases associated with a variety of cellular activities CR542_RS09000 SM00930 CR542_RS09000 CR542_RS09085 SM00487 DEAD-like helicases superfamily CR542_RS09120 SM00047 Lysozyme subfamily 2 CR542_RS09120 SM01095 Cpl-7 lysozyme C-terminal domain CR542_RS09260 SM00487 DEAD-like helicases superfamily CR542_RS09265 SM00990 CR542_RS09265 CR542_RS09270 SM00885 D5 N terminal like CR542_RS09275 SM00482 DNA polymerase A domain CR542_RS09340 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS09380 SM00878 Biotin carboxylase C-terminal domain CR542_RS09400 SM00825 Beta-ketoacyl synthase CR542_RS09410 SM00822 CR542_RS09410 CR542_RS09415 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CR542_RS09435 SM00347 helix_turn_helix multiple antibiotic resistance protein CR542_RS09465 SM01005 Alanine racemase, C-terminal domain CR542_RS09475 SM00957 SecA DEAD-like domain CR542_RS09475 SM00958 SecA preprotein cross-linking domain CR542_RS09495 SM00640 Glycosyl hydrolases family 32 CR542_RS09500 SM00354 helix_turn _helix lactose operon repressor CR542_RS09515 SM00841 Elongation factor P, C-terminal CR542_RS09515 SM01185 CR542_RS09515 CR542_RS09525 SM00382 ATPases associated with a variety of cellular activities CR542_RS09565 SM00855 Phosphoglycerate mutase family CR542_RS09570 SM00855 Phosphoglycerate mutase family CR542_RS09630 SM00342 helix_turn_helix, arabinose operon control protein CR542_RS09645 SM01061 CAT RNA binding domain CR542_RS09665 SM00861 Transketolase, pyrimidine binding domain CR542_RS09710 SM00316 Ribosomal protein S1-like RNA-binding domain CR542_RS09710 SM00322 K homology RNA-binding domain CR542_RS09735 SM00382 ATPases associated with a variety of cellular activities CR542_RS09765 SM01120 CR542_RS09765 CR542_RS09765 SM01121 CR542_RS09765 CR542_RS09790 SM00382 ATPases associated with a variety of cellular activities CR542_RS09795 SM00382 ATPases associated with a variety of cellular activities CR542_RS09805 SM00936 Penicillin-binding protein 5, C-terminal domain CR542_RS09830 SM00382 ATPases associated with a variety of cellular activities CR542_RS09850 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS09855 SM00382 ATPases associated with a variety of cellular activities CR542_RS09865 SM00244 prohibitin homologues CR542_RS09950 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS10000 SM00967 RNA 2'-O ribose methyltransferase substrate binding CR542_RS10015 SM00382 ATPases associated with a variety of cellular activities CR542_RS10030 SM00840 CR542_RS10030 CR542_RS10050 SM00316 Ribosomal protein S1-like RNA-binding domain CR542_RS10050 SM00322 K homology RNA-binding domain CR542_RS10060 SM01387 CR542_RS10060 CR542_RS10065 SM00382 ATPases associated with a variety of cellular activities CR542_RS10110 SM00363 S4 RNA-binding domain CR542_RS10150 SM01329 CR542_RS10150 CR542_RS10155 SM00917 LeuA allosteric (dimerisation) domain CR542_RS10170 SM00345 helix_turn_helix gluconate operon transcriptional repressor CR542_RS10210 SM00479 CR542_RS10210 CR542_RS10210 SM00481 DNA polymerase alpha chain like domain CR542_RS10230 SM01120 CR542_RS10230 CR542_RS10265 SM01323 CR542_RS10265 CR542_RS10270 SM00788 Adenylosuccinate synthetase CR542_RS10300 SM00382 ATPases associated with a variety of cellular activities CR542_RS10300 SM01086 C-terminal, D2-small domain, of ClpB protein CR542_RS10340 SM01252 CR542_RS10340 CR542_RS10345 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS10350 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS10355 SM01040 BRO family, N-terminal domain CR542_RS10435 SM00382 ATPases associated with a variety of cellular activities CR542_RS10440 SM00382 ATPases associated with a variety of cellular activities CR542_RS10450 SM00257 Lysin motif CR542_RS10485 SM01228 CR542_RS10485 CR542_RS10510 SM00363 S4 RNA-binding domain CR542_RS10510 SM01390 CR542_RS10510 CR542_RS10560 SM00642 Alpha-amylase domain CR542_RS10565 SM00354 helix_turn _helix lactose operon repressor CR542_RS10605 SM00287 Bacterial SH3 domain homologues CR542_RS10610 SM00836 DALR anticodon binding domain CR542_RS10610 SM01016 Arginyl tRNA synthetase N terminal dom CR542_RS10620 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CR542_RS10620 SM00534 ATPase domain of DNA mismatch repair MUTS family CR542_RS10640 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS10650 SM00382 ATPases associated with a variety of cellular activities CR542_RS10695 SM00382 ATPases associated with a variety of cellular activities CR542_RS10705 SM01022 CR542_RS10705 CR542_RS10745 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CR542_RS10745 SM00954 Region found in RelA / SpoT proteins CR542_RS10765 SM00529 Helix-turn-helix diphteria tox regulatory element CR542_RS10765 SM00899 CR542_RS10765 CR542_RS10785 SM00382 ATPases associated with a variety of cellular activities CR542_RS10855 SM00062 Bacterial periplasmic substrate-binding proteins CR542_RS10865 SM00382 ATPases associated with a variety of cellular activities CR542_RS10870 SM00354 helix_turn _helix lactose operon repressor CR542_RS10875 SM00642 Alpha-amylase domain CR542_RS10875 SM01208 CR542_RS10875 CR542_RS10895 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CR542_RS10905 SM01007 Class II Aldolase and Adducin N-terminal domain CR542_RS10925 SM00861 Transketolase, pyrimidine binding domain CR542_RS10990 SM00347 helix_turn_helix multiple antibiotic resistance protein CR542_RS10995 SM00382 ATPases associated with a variety of cellular activities CR542_RS11000 SM00382 ATPases associated with a variety of cellular activities CR542_RS11065 SM00530 Helix-turn-helix XRE-family like proteins CR542_RS11070 SM01252 CR542_RS11070 CR542_RS11085 SM00855 Phosphoglycerate mutase family CR542_RS11090 SM00382 ATPases associated with a variety of cellular activities CR542_RS11095 SM00947 Carbonic anhydrase CR542_RS11105 SM00850 LytTr DNA-binding domain CR542_RS11165 SM00393 Putative single-stranded nucleic acids-binding domain CR542_RS11165 SM01245 CR542_RS11165 CR542_RS11180 SM00493 CR542_RS11180 CR542_RS11210 SM00650 Ribosomal RNA adenine dimethylases CR542_RS11225 SM00382 ATPases associated with a variety of cellular activities CR542_RS11245 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CR542_RS11430 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CR542_RS11430 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CR542_RS11465 SM00116 Domain in cystathionine beta-synthase and other proteins. CR542_RS11465 SM01240 CR542_RS11465 CR542_RS11480 SM00382 ATPases associated with a variety of cellular activities CR542_RS11515 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CR542_RS11520 SM00470 ParB-like nuclease domain