locus-tag class description DK235_RS00005 PF00308 Bacterial dnaA protein DK235_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix DK235_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DK235_RS00010 PF02767 DNA polymerase III beta subunit, central domain DK235_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DK235_RS00025 PF01381 Helix-turn-helix DK235_RS00030 PF01926 50S ribosome-binding GTPase DK235_RS00030 PF06071 Protein of unknown function (DUF933) DK235_RS00035 PF01195 Peptidyl-tRNA hydrolase DK235_RS00040 PF00270 DEAD/DEAH box helicase DK235_RS00040 PF02559 CarD-like/TRCF domain DK235_RS00040 PF17757 UvrB interaction domain DK235_RS00040 PF03461 TRCF domain DK235_RS00040 PF00271 Helicase conserved C-terminal domain DK235_RS00045 PF01479 S4 domain DK235_RS00060 PF01171 PP-loop family DK235_RS00070 PF00004 ATPase family associated with various cellular activities (AAA) DK235_RS00070 PF17862 AAA+ lid domain DK235_RS00070 PF06480 FtsH Extracellular DK235_RS00070 PF01434 Peptidase family M41 DK235_RS00180 PF04085 rod shape-determining protein MreC DK235_RS00195 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DK235_RS00195 PF14572 Phosphoribosyl synthetase-associated domain DK235_RS00200 PF00155 Aminotransferase class I and II DK235_RS00205 PF11967 Recombination protein O N terminal DK235_RS00205 PF02565 Recombination protein O C terminal DK235_RS00210 PF02504 Fatty acid synthesis protein DK235_RS00215 PF00550 Phosphopantetheine attachment site DK235_RS00220 PF01259 SAICAR synthetase DK235_RS00225 PF00586 AIR synthase related protein, N-terminal domain DK235_RS00225 PF02769 AIR synthase related protein, C-terminal domain DK235_RS00225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DK235_RS00230 PF13537 Glutamine amidotransferase domain DK235_RS00230 PF00156 Phosphoribosyl transferase domain DK235_RS00235 PF02769 AIR synthase related protein, C-terminal domain DK235_RS00235 PF00586 AIR synthase related protein, N-terminal domain DK235_RS00240 PF00551 Formyl transferase DK235_RS00245 PF02142 MGS-like domain DK235_RS00245 PF01808 AICARFT/IMPCHase bienzyme DK235_RS00250 PF02843 Phosphoribosylglycinamide synthetase, C domain DK235_RS00250 PF02844 Phosphoribosylglycinamide synthetase, N domain DK235_RS00250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DK235_RS00255 PF00731 AIR carboxylase DK235_RS00260 PF02222 ATP-grasp domain DK235_RS00260 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DK235_RS00275 PF10397 Adenylosuccinate lyase C-terminus DK235_RS00275 PF00206 Lyase DK235_RS00295 PF00005 ABC transporter DK235_RS00305 PF00005 ABC transporter DK235_RS00305 PF00664 ABC transporter transmembrane region DK235_RS00315 PF05491 RuvB C-terminal winged helix domain DK235_RS00315 PF05496 Holliday junction DNA helicase RuvB P-loop domain DK235_RS00315 PF17864 RuvB AAA lid domain DK235_RS00325 PF13419 Haloacid dehalogenase-like hydrolase DK235_RS00345 PF08245 Mur ligase middle domain DK235_RS00345 PF02875 Mur ligase family, glutamate ligase domain DK235_RS00355 PF01119 DNA mismatch repair protein, C-terminal domain DK235_RS00355 PF08676 MutL C terminal dimerisation domain DK235_RS00360 PF07499 RuvA, C-terminal domain DK235_RS00360 PF01330 RuvA N terminal domain DK235_RS00365 PF00958 GMP synthase C terminal domain DK235_RS00365 PF03352 Methyladenine glycosylase DK235_RS00365 PF13673 Acetyltransferase (GNAT) domain DK235_RS00365 PF00117 Glutamine amidotransferase class-I DK235_RS00365 PF13302 Acetyltransferase (GNAT) domain DK235_RS00370 PF00994 Probable molybdopterin binding domain DK235_RS00370 PF02464 Competence-damaged protein DK235_RS00370 PF18146 Damage-inducible protein CinA KH domain DK235_RS00375 PF00154 recA bacterial DNA recombination protein DK235_RS00380 PF03960 ArsC family DK235_RS00385 PF06135 IreB regulatory phosphoprotein DK235_RS00390 PF03652 Holliday junction resolvase DK235_RS00395 PF06949 Protein of unknown function (DUF1292) DK235_RS00410 PF00338 Ribosomal protein S10p/S20e DK235_RS00415 PF00297 Ribosomal protein L3 DK235_RS00420 PF00573 Ribosomal protein L4/L1 family DK235_RS00425 PF00276 Ribosomal protein L23 DK235_RS00430 PF00181 Ribosomal Proteins L2, RNA binding domain DK235_RS00430 PF03947 Ribosomal Proteins L2, C-terminal domain DK235_RS00435 PF00203 Ribosomal protein S19 DK235_RS00440 PF00237 Ribosomal protein L22p/L17e DK235_RS00445 PF00189 Ribosomal protein S3, C-terminal domain DK235_RS00445 PF07650 KH domain DK235_RS00450 PF00252 Ribosomal protein L16p/L10e DK235_RS00455 PF00831 Ribosomal L29 protein DK235_RS00460 PF00366 Ribosomal protein S17 DK235_RS00465 PF00238 Ribosomal protein L14p/L23e DK235_RS00470 PF00467 KOW motif DK235_RS00470 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DK235_RS00475 PF00673 ribosomal L5P family C-terminus DK235_RS00475 PF00281 Ribosomal protein L5 DK235_RS00480 PF00253 Ribosomal protein S14p/S29e DK235_RS00485 PF00410 Ribosomal protein S8 DK235_RS00490 PF00347 Ribosomal protein L6 DK235_RS00495 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DK235_RS00500 PF03719 Ribosomal protein S5, C-terminal domain DK235_RS00500 PF00333 Ribosomal protein S5, N-terminal domain DK235_RS00505 PF00327 Ribosomal protein L30p/L7e DK235_RS00510 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DK235_RS00515 PF00344 SecY translocase DK235_RS00525 PF01176 Translation initiation factor 1A / IF-1 DK235_RS00530 PF00444 Ribosomal protein L36 DK235_RS00535 PF00416 Ribosomal protein S13/S18 DK235_RS00540 PF00411 Ribosomal protein S11 DK235_RS00545 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DK235_RS00545 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DK235_RS00545 PF01000 RNA polymerase Rpb3/RpoA insert domain DK235_RS00550 PF01196 Ribosomal protein L17 DK235_RS00635 PF14659 Phage integrase, N-terminal SAM-like domain DK235_RS00635 PF00589 Phage integrase family DK235_RS00645 PF18106 Rolling Circle replication initiation protein N-terminal domain DK235_RS00645 PF02486 Replication initiation factor DK235_RS00680 PF00589 Phage integrase family DK235_RS00680 PF14659 Phage integrase, N-terminal SAM-like domain DK235_RS00690 PF01047 MarR family DK235_RS00695 PF00005 ABC transporter DK235_RS00700 PF00950 ABC 3 transport family DK235_RS00705 PF01297 Zinc-uptake complex component A periplasmic DK235_RS00705 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DK235_RS00710 PF03965 Penicillinase repressor DK235_RS00725 PF01479 S4 domain DK235_RS00725 PF00579 tRNA synthetases class I (W and Y) DK235_RS00730 PF00912 Transglycosylase DK235_RS00730 PF00905 Penicillin binding protein transpeptidase domain DK235_RS00735 PF04563 RNA polymerase beta subunit DK235_RS00735 PF04561 RNA polymerase Rpb2, domain 2 DK235_RS00735 PF04565 RNA polymerase Rpb2, domain 3 DK235_RS00735 PF10385 RNA polymerase beta subunit external 1 domain DK235_RS00735 PF00562 RNA polymerase Rpb2, domain 6 DK235_RS00735 PF04560 RNA polymerase Rpb2, domain 7 DK235_RS00740 PF04997 RNA polymerase Rpb1, domain 1 DK235_RS00740 PF00623 RNA polymerase Rpb1, domain 2 DK235_RS00740 PF04983 RNA polymerase Rpb1, domain 3 DK235_RS00740 PF05000 RNA polymerase Rpb1, domain 4 DK235_RS00740 PF04998 RNA polymerase Rpb1, domain 5 DK235_RS00755 PF00437 Type II/IV secretion system protein DK235_RS00760 PF00482 Type II secretion system (T2SS), protein F DK235_RS00765 PF07963 Prokaryotic N-terminal methylation motif DK235_RS00795 PF00871 Acetokinase family DK235_RS00800 PF07155 ECF-type riboflavin transporter, S component DK235_RS00805 PF08245 Mur ligase middle domain DK235_RS00805 PF02875 Mur ligase family, glutamate ligase domain DK235_RS00810 PF05343 M42 glutamyl aminopeptidase DK235_RS00820 PF00085 Thioredoxin DK235_RS00830 PF01588 Putative tRNA binding domain DK235_RS00830 PF14794 Domain of unknown function (DUF4479) DK235_RS00840 PF00436 Single-strand binding protein family DK235_RS00850 PF00166 Chaperonin 10 Kd subunit DK235_RS00855 PF00118 TCP-1/cpn60 chaperonin family DK235_RS00860 PF00164 Ribosomal protein S12/S23 DK235_RS00865 PF00177 Ribosomal protein S7p/S5e DK235_RS00870 PF03764 Elongation factor G, domain IV DK235_RS00870 PF03144 Elongation factor Tu domain 2 DK235_RS00870 PF00009 Elongation factor Tu GTP binding domain DK235_RS00870 PF00679 Elongation factor G C-terminus DK235_RS00870 PF14492 Elongation Factor G, domain II DK235_RS00875 PF01431 Peptidase family M13 DK235_RS00875 PF05649 Peptidase family M13 DK235_RS00880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DK235_RS00880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DK235_RS00885 PF00162 Phosphoglycerate kinase DK235_RS00890 PF06081 Aromatic acid exporter family member 1 DK235_RS00895 PF13411 MerR HTH family regulatory protein DK235_RS00900 PF03951 Glutamine synthetase, beta-Grasp domain DK235_RS00900 PF00120 Glutamine synthetase, catalytic domain DK235_RS00905 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DK235_RS00905 PF00753 Metallo-beta-lactamase superfamily DK235_RS00905 PF17770 Ribonuclease J C-terminal domain DK235_RS00915 PF00814 Glycoprotease family DK235_RS00925 PF00814 Glycoprotease family DK235_RS00930 PF02311 AraC-like ligand binding domain DK235_RS00930 PF12833 Helix-turn-helix domain DK235_RS00935 PF01547 Bacterial extracellular solute-binding protein DK235_RS00940 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS00945 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS00950 PF16875 Glycosyl hydrolase family 36 N-terminal domain DK235_RS00950 PF16874 Glycosyl hydrolase family 36 C-terminal domain DK235_RS00965 PF03601 Conserved hypothetical protein 698 DK235_RS00990 PF00005 ABC transporter DK235_RS00990 PF13732 Domain of unknown function (DUF4162) DK235_RS01000 PF00232 Glycosyl hydrolase family 1 DK235_RS01005 PF08279 HTH domain DK235_RS01005 PF04394 Protein of unknown function, DUF536 DK235_RS01010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK235_RS01015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK235_RS01020 PF03611 PTS system sugar-specific permease component DK235_RS01025 PF00456 Transketolase, thiamine diphosphate binding domain DK235_RS01030 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DK235_RS01030 PF02779 Transketolase, pyrimidine binding domain DK235_RS01030 PF02780 Transketolase, C-terminal domain DK235_RS01035 PF03009 Glycerophosphoryl diester phosphodiesterase family DK235_RS01040 PF02575 YbaB/EbfC DNA-binding family DK235_RS01045 PF01380 SIS domain DK235_RS01055 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal DK235_RS01055 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DK235_RS01055 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DK235_RS01070 PF01228 Glycine radical DK235_RS01070 PF02901 Pyruvate formate lyase-like DK235_RS01075 PF00817 impB/mucB/samB family DK235_RS01075 PF11799 impB/mucB/samB family C-terminal domain DK235_RS01075 PF11798 IMS family HHH motif DK235_RS01085 PF13460 NAD(P)H-binding DK235_RS01090 PF00294 pfkB family carbohydrate kinase DK235_RS01105 PF02378 Phosphotransferase system, EIIC DK235_RS01125 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS01130 PF00005 ABC transporter DK235_RS01140 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DK235_RS01145 PF00403 Heavy-metal-associated domain DK235_RS01150 PF00403 Heavy-metal-associated domain DK235_RS01155 PF00403 Heavy-metal-associated domain DK235_RS01160 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DK235_RS01160 PF14490 Helix-hairpin-helix containing domain DK235_RS01160 PF13538 UvrD-like helicase C-terminal domain DK235_RS01165 PF10502 Signal peptidase, peptidase S26 DK235_RS01170 PF01351 Ribonuclease HII DK235_RS01170 PF11858 Domain of unknown function (DUF3378) DK235_RS01175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DK235_RS01175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DK235_RS01185 PF00128 Alpha amylase, catalytic domain DK235_RS01185 PF16657 Maltogenic Amylase, C-terminal domain DK235_RS01190 PF02378 Phosphotransferase system, EIIC DK235_RS01190 PF00367 phosphotransferase system, EIIB DK235_RS01195 PF00392 Bacterial regulatory proteins, gntR family DK235_RS01195 PF07702 UTRA domain DK235_RS01210 PF00488 MutS domain V DK235_RS01210 PF01713 Smr domain DK235_RS01220 PF00085 Thioredoxin DK235_RS01225 PF00501 AMP-binding enzyme DK235_RS01225 PF13193 AMP-binding enzyme C-terminal domain DK235_RS01230 PF01641 SelR domain DK235_RS01230 PF01625 Peptide methionine sulfoxide reductase DK235_RS01250 PF12704 MacB-like periplasmic core domain DK235_RS01250 PF02687 FtsX-like permease family DK235_RS01250 PF00005 ABC transporter DK235_RS01255 PF01235 Sodium:alanine symporter family DK235_RS01260 PF00924 Mechanosensitive ion channel DK235_RS01270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DK235_RS01270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DK235_RS01275 PF01180 Dihydroorotate dehydrogenase DK235_RS01280 PF09587 Bacterial capsule synthesis protein PGA_cap DK235_RS01300 PF00005 ABC transporter DK235_RS01305 PF00440 Bacterial regulatory proteins, tetR family DK235_RS01330 PF03788 LrgA family DK235_RS01335 PF04172 LrgB-like family DK235_RS01340 PF01226 Formate/nitrite transporter DK235_RS01345 PF00230 Major intrinsic protein DK235_RS01350 PF05872 Bacterial protein of unknown function (DUF853) DK235_RS01355 PF00293 NUDIX domain DK235_RS01375 PF00471 Ribosomal protein L33 DK235_RS01380 PF01783 Ribosomal L32p protein family DK235_RS01385 PF13393 Histidyl-tRNA synthetase DK235_RS01385 PF03129 Anticodon binding domain DK235_RS01390 PF08240 Alcohol dehydrogenase GroES-like domain DK235_RS01390 PF00107 Zinc-binding dehydrogenase DK235_RS01395 PF00465 Iron-containing alcohol dehydrogenase DK235_RS01395 PF00171 Aldehyde dehydrogenase family DK235_RS01400 PF14821 Threonine synthase N terminus DK235_RS01400 PF00291 Pyridoxal-phosphate dependent enzyme DK235_RS01405 PF00005 ABC transporter DK235_RS01405 PF00664 ABC transporter transmembrane region DK235_RS01410 PF00664 ABC transporter transmembrane region DK235_RS01410 PF00005 ABC transporter DK235_RS01425 PF00005 ABC transporter DK235_RS01430 PF01554 MatE DK235_RS01435 PF10509 Galactokinase galactose-binding signature DK235_RS01435 PF00288 GHMP kinases N terminal domain DK235_RS01435 PF08544 GHMP kinases C terminal DK235_RS01445 PF00288 GHMP kinases N terminal domain DK235_RS01445 PF08544 GHMP kinases C terminal DK235_RS01450 PF01070 FMN-dependent dehydrogenase DK235_RS01455 PF00664 ABC transporter transmembrane region DK235_RS01455 PF00005 ABC transporter DK235_RS01460 PF00664 ABC transporter transmembrane region DK235_RS01460 PF00005 ABC transporter DK235_RS01470 PF05167 Uncharacterised ACR (DUF711) DK235_RS01475 PF00300 Histidine phosphatase superfamily (branch 1) DK235_RS01480 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DK235_RS01480 PF01628 HrcA protein C terminal domain DK235_RS01485 PF01025 GrpE DK235_RS01490 PF00012 Hsp70 protein DK235_RS01495 PF00684 DnaJ central domain DK235_RS01495 PF00226 DnaJ domain DK235_RS01495 PF01556 DnaJ C terminal domain DK235_RS01500 PF03099 Biotin/lipoate A/B protein ligase family DK235_RS01505 PF01425 Amidase DK235_RS01510 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK235_RS01515 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS01520 PF13443 Cro/C1-type HTH DNA-binding domain DK235_RS01535 PF01475 Ferric uptake regulator family DK235_RS01540 PF01416 tRNA pseudouridine synthase DK235_RS01555 PF04260 Protein of unknown function (DUF436) DK235_RS01580 PF12697 Alpha/beta hydrolase family DK235_RS01585 PF00106 short chain dehydrogenase DK235_RS01590 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS01590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DK235_RS01595 PF02082 Transcriptional regulator DK235_RS01615 PF05697 Bacterial trigger factor protein (TF) DK235_RS01615 PF05698 Bacterial trigger factor protein (TF) C-terminus DK235_RS01615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DK235_RS01635 PF05066 HB1, ASXL, restriction endonuclease HTH domain DK235_RS01640 PF00117 Glutamine amidotransferase class-I DK235_RS01640 PF06418 CTP synthase N-terminus DK235_RS01650 PF01116 Fructose-bisphosphate aldolase class-II DK235_RS01655 PF00830 Ribosomal L28 family DK235_RS01690 PF00270 DEAD/DEAH box helicase DK235_RS01690 PF00271 Helicase conserved C-terminal domain DK235_RS01690 PF17191 RecG wedge domain DK235_RS01695 PF00710 Asparaginase, N-terminal DK235_RS01695 PF17763 Glutaminase/Asparaginase C-terminal domain DK235_RS01700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DK235_RS01710 PF00582 Universal stress protein family DK235_RS01715 PF00155 Aminotransferase class I and II DK235_RS01720 PF08222 CodY helix-turn-helix domain DK235_RS01720 PF06018 CodY GAF-like domain DK235_RS01725 PF00857 Isochorismatase family DK235_RS01730 PF01245 Ribosomal protein L19 DK235_RS01740 PF02686 Glu-tRNAGln amidotransferase C subunit DK235_RS01745 PF01425 Amidase DK235_RS01750 PF02934 GatB/GatE catalytic domain DK235_RS01750 PF02637 GatB domain DK235_RS01755 PF13286 Phosphohydrolase-associated domain DK235_RS01755 PF01966 HD domain DK235_RS01760 PF00356 Bacterial regulatory proteins, lacI family DK235_RS01765 PF00288 GHMP kinases N terminal domain DK235_RS01765 PF08544 GHMP kinases C terminal DK235_RS01765 PF10509 Galactokinase galactose-binding signature DK235_RS01770 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DK235_RS01770 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DK235_RS01775 PF00892 EamA-like transporter family DK235_RS01780 PF03932 CutC family DK235_RS01790 PF13419 Haloacid dehalogenase-like hydrolase DK235_RS01795 PF01926 50S ribosome-binding GTPase DK235_RS01800 PF01985 CRS1 / YhbY (CRM) domain DK235_RS01805 PF01467 Cytidylyltransferase-like DK235_RS01810 PF01966 HD domain DK235_RS01835 PF13649 Methyltransferase domain DK235_RS01840 PF07693 KAP family P-loop domain DK235_RS01845 PF05636 HIGH Nucleotidyl Transferase DK235_RS01850 PF07739 TipAS antibiotic-recognition domain DK235_RS01850 PF13411 MerR HTH family regulatory protein DK235_RS01855 PF00350 Dynamin family DK235_RS01875 PF01327 Polypeptide deformylase DK235_RS01880 PF07724 AAA domain (Cdc48 subfamily) DK235_RS01880 PF00004 ATPase family associated with various cellular activities (AAA) DK235_RS01880 PF17871 AAA lid domain DK235_RS01880 PF10431 C-terminal, D2-small domain, of ClpB protein DK235_RS01885 PF02446 4-alpha-glucanotransferase DK235_RS01890 PF00343 Carbohydrate phosphorylase DK235_RS01900 PF03372 Endonuclease/Exonuclease/phosphatase family DK235_RS01905 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK235_RS01905 PF00367 phosphotransferase system, EIIB DK235_RS01905 PF02378 Phosphotransferase system, EIIC DK235_RS01920 PF01709 Transcriptional regulator DK235_RS01930 PF07155 ECF-type riboflavin transporter, S component DK235_RS01950 PF00005 ABC transporter DK235_RS01950 PF12558 ATP-binding cassette cobalt transporter DK235_RS01960 PF00313 'Cold-shock' DNA-binding domain DK235_RS01965 PF02527 rRNA small subunit methyltransferase G DK235_RS01970 PF00905 Penicillin binding protein transpeptidase domain DK235_RS01970 PF00912 Transglycosylase DK235_RS01975 PF03838 Recombination protein U DK235_RS01980 PF06908 YspA SLOG family DK235_RS01985 PF05103 DivIVA protein DK235_RS01995 PF01170 Putative RNA methylase family UPF0020 DK235_RS01995 PF02926 THUMP domain DK235_RS02000 PF18041 MapZ extracellular domain 1 DK235_RS02000 PF18708 MapZ extracellular C-terminal domain 2 DK235_RS02005 PF02664 S-Ribosylhomocysteinase (LuxS) DK235_RS02010 PF01966 HD domain DK235_RS02010 PF00013 KH domain DK235_RS02010 PF12072 Domain of unknown function (DUF3552) DK235_RS02015 PF00625 Guanylate kinase DK235_RS02020 PF01192 RNA polymerase Rpb6 DK235_RS02025 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DK235_RS02025 PF18074 Primosomal protein N C-terminal domain DK235_RS02025 PF17764 3′ DNA-binding domain (3′BD) DK235_RS02025 PF00271 Helicase conserved C-terminal domain DK235_RS02025 PF04851 Type III restriction enzyme, res subunit DK235_RS02030 PF02911 Formyl transferase, C-terminal domain DK235_RS02030 PF00551 Formyl transferase DK235_RS02035 PF01189 16S rRNA methyltransferase RsmB/F DK235_RS02035 PF01029 NusB family DK235_RS02045 PF00069 Protein kinase domain DK235_RS02045 PF03793 PASTA domain DK235_RS02055 PF07730 Histidine kinase DK235_RS02055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS02060 PF00196 Bacterial regulatory proteins, luxR family DK235_RS02060 PF00072 Response regulator receiver domain DK235_RS02065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DK235_RS02070 PF00575 S1 RNA binding domain DK235_RS02075 PF00291 Pyridoxal-phosphate dependent enzyme DK235_RS02080 PF01205 Uncharacterized protein family UPF0029 DK235_RS02080 PF09186 Domain of unknown function (DUF1949) DK235_RS02085 PF04851 Type III restriction enzyme, res subunit DK235_RS02085 PF00271 Helicase conserved C-terminal domain DK235_RS02095 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DK235_RS02095 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DK235_RS02170 PF01938 TRAM domain DK235_RS02170 PF05958 tRNA (Uracil-5-)-methyltransferase DK235_RS02175 PF02631 RecX family DK235_RS02180 PF04167 Protein of unknown function (DUF402) DK235_RS02190 PF07702 UTRA domain DK235_RS02190 PF00392 Bacterial regulatory proteins, gntR family DK235_RS02195 PF07702 UTRA domain DK235_RS02195 PF00392 Bacterial regulatory proteins, gntR family DK235_RS02200 PF01301 Glycosyl hydrolases family 35 DK235_RS02205 PF03830 PTS system sorbose subfamily IIB component DK235_RS02215 PF03613 PTS system mannose/fructose/sorbose family IID component DK235_RS02225 PF01263 Aldose 1-epimerase DK235_RS02250 PF08264 Anticodon-binding domain of tRNA DK235_RS02250 PF00133 tRNA synthetases class I (I, L, M and V) DK235_RS02250 PF10458 Valyl tRNA synthetase tRNA binding arm DK235_RS02260 PF17841 BID domain of Bartonella effector protein (Bep) DK235_RS02260 PF02661 Fic/DOC family DK235_RS02285 PF03590 Aspartate-ammonia ligase DK235_RS02305 PF10502 Signal peptidase, peptidase S26 DK235_RS02315 PF07581 The GLUG motif DK235_RS02315 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DK235_RS02335 PF08245 Mur ligase middle domain DK235_RS02335 PF02875 Mur ligase family, glutamate ligase domain DK235_RS02340 PF04101 Glycosyltransferase family 28 C-terminal domain DK235_RS02340 PF03033 Glycosyltransferase family 28 N-terminal domain DK235_RS02345 PF08478 POTRA domain, FtsQ-type DK235_RS02350 PF11983 Membrane-attachment and polymerisation-promoting switch DK235_RS02350 PF02491 SHS2 domain inserted in FTSA DK235_RS02355 PF12327 FtsZ family, C-terminal domain DK235_RS02355 PF00091 Tubulin/FtsZ family, GTPase domain DK235_RS02360 PF01168 Alanine racemase, N-terminal domain DK235_RS02365 PF04472 Cell division protein SepF DK235_RS02380 PF05103 DivIVA protein DK235_RS02390 PF08264 Anticodon-binding domain of tRNA DK235_RS02390 PF00133 tRNA synthetases class I (I, L, M and V) DK235_RS02400 PF00300 Histidine phosphatase superfamily (branch 1) DK235_RS02400 PF00293 NUDIX domain DK235_RS02405 PF17871 AAA lid domain DK235_RS02405 PF10431 C-terminal, D2-small domain, of ClpB protein DK235_RS02405 PF00004 ATPase family associated with various cellular activities (AAA) DK235_RS02405 PF07724 AAA domain (Cdc48 subfamily) DK235_RS02410 PF08796 Protein of unknown function (DUF1797) DK235_RS02415 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS02420 PF00005 ABC transporter DK235_RS02425 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DK235_RS02425 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DK235_RS02435 PF10502 Signal peptidase, peptidase S26 DK235_RS02455 PF13411 MerR HTH family regulatory protein DK235_RS02480 PF02229 Transcriptional Coactivator p15 (PC4) DK235_RS02485 PF02632 BioY family DK235_RS02490 PF04199 Putative cyclase DK235_RS02495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK235_RS02495 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS02500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DK235_RS02505 PF00005 ABC transporter DK235_RS02510 PF02687 FtsX-like permease family DK235_RS02510 PF12704 MacB-like periplasmic core domain DK235_RS02520 PF01336 OB-fold nucleic acid binding domain DK235_RS02520 PF00152 tRNA synthetases class II (D, K and N) DK235_RS02530 PF04073 Aminoacyl-tRNA editing domain DK235_RS02540 PF09515 Thiamine transporter protein (Thia_YuaJ) DK235_RS02560 PF01098 Cell cycle protein DK235_RS02565 PF00311 Phosphoenolpyruvate carboxylase DK235_RS02570 PF08281 Sigma-70, region 4 DK235_RS02570 PF04542 Sigma-70 region 2 DK235_RS02580 PF00009 Elongation factor Tu GTP binding domain DK235_RS02580 PF03144 Elongation factor Tu domain 2 DK235_RS02580 PF03143 Elongation factor Tu C-terminal domain DK235_RS02585 PF00121 Triosephosphate isomerase DK235_RS02595 PF01966 HD domain DK235_RS02610 PF00665 Integrase core domain DK235_RS02610 PF13936 Helix-turn-helix domain DK235_RS02615 PF00962 Adenosine/AMP deaminase DK235_RS02625 PF00005 ABC transporter DK235_RS02630 PF00392 Bacterial regulatory proteins, gntR family DK235_RS02630 PF07702 UTRA domain DK235_RS02635 PF01336 OB-fold nucleic acid binding domain DK235_RS02635 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK235_RS02635 PF14579 Helix-hairpin-helix motif DK235_RS02635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK235_RS02635 PF02811 PHP domain DK235_RS02640 PF00365 Phosphofructokinase DK235_RS02645 PF02887 Pyruvate kinase, alpha/beta domain DK235_RS02645 PF00224 Pyruvate kinase, barrel domain DK235_RS02650 PF09028 Mac 1 DK235_RS02655 PF01266 FAD dependent oxidoreductase DK235_RS02660 PF13472 GDSL-like Lipase/Acylhydrolase family DK235_RS02660 PF07859 alpha/beta hydrolase fold DK235_RS02665 PF10502 Signal peptidase, peptidase S26 DK235_RS02670 PF01380 SIS domain DK235_RS02675 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS02680 PF00005 ABC transporter DK235_RS02685 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK235_RS02690 PF00753 Metallo-beta-lactamase superfamily DK235_RS02695 PF13307 Helicase C-terminal domain DK235_RS02695 PF00929 Exonuclease DK235_RS02700 PF01472 PUA domain DK235_RS02700 PF00696 Amino acid kinase family DK235_RS02705 PF00171 Aldehyde dehydrogenase family DK235_RS02710 PF03807 NADP oxidoreductase coenzyme F420-dependent DK235_RS02710 PF14748 Pyrroline-5-carboxylate reductase dimerisation DK235_RS02720 PF02645 Uncharacterised protein, DegV family COG1307 DK235_RS02725 PF00392 Bacterial regulatory proteins, gntR family DK235_RS02725 PF00155 Aminotransferase class I and II DK235_RS02730 PF03883 Peroxide stress protein YaaA DK235_RS02740 PF02706 Chain length determinant protein DK235_RS02745 PF13614 AAA domain DK235_RS02755 PF02397 Bacterial sugar transferase DK235_RS02765 PF13439 Glycosyltransferase Family 4 DK235_RS02765 PF00534 Glycosyl transferases group 1 DK235_RS02780 PF01501 Glycosyl transferase family 8 DK235_RS02780 PF00535 Glycosyl transferase family 2 DK235_RS02785 PF00535 Glycosyl transferase family 2 DK235_RS02785 PF01501 Glycosyl transferase family 8 DK235_RS02800 PF13472 GDSL-like Lipase/Acylhydrolase family DK235_RS02800 PF02348 Cytidylyltransferase DK235_RS02815 PF08666 SAF domain DK235_RS02815 PF03102 NeuB family DK235_RS02820 PF02350 UDP-N-acetylglucosamine 2-epimerase DK235_RS02830 PF02348 Cytidylyltransferase DK235_RS02830 PF13472 GDSL-like Lipase/Acylhydrolase family DK235_RS02895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK235_RS02900 PF01202 Shikimate kinase DK235_RS02905 PF00800 Prephenate dehydratase DK235_RS02910 PF03816 Cell envelope-related transcriptional attenuator domain DK235_RS02915 PF05958 tRNA (Uracil-5-)-methyltransferase DK235_RS02925 PF03275 UDP-galactopyranose mutase DK235_RS02930 PF02525 Flavodoxin-like fold DK235_RS02950 PF00155 Aminotransferase class I and II DK235_RS02955 PF01336 OB-fold nucleic acid binding domain DK235_RS02955 PF00152 tRNA synthetases class II (D, K and N) DK235_RS02970 PF01554 MatE DK235_RS02975 PF01042 Endoribonuclease L-PSP DK235_RS02980 PF03668 P-loop ATPase protein family DK235_RS02985 PF01933 Uncharacterised protein family UPF0052 DK235_RS02990 PF10298 WhiA N-terminal LAGLIDADG-like domain DK235_RS02990 PF02650 WhiA C-terminal HTH domain DK235_RS02990 PF14527 WhiA LAGLIDADG-like domain DK235_RS03005 PF13673 Acetyltransferase (GNAT) domain DK235_RS03010 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK235_RS03010 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK235_RS03015 PF00696 Amino acid kinase family DK235_RS03020 PF03606 C4-dicarboxylate anaerobic carrier DK235_RS03025 PF01546 Peptidase family M20/M25/M40 DK235_RS03030 PF04650 YSIRK type signal peptide DK235_RS03030 PF00746 LPXTG cell wall anchor motif DK235_RS03030 PF00728 Glycosyl hydrolase family 20, catalytic domain DK235_RS03030 PF07501 G5 domain DK235_RS03035 PF01316 Arginine repressor, DNA binding domain DK235_RS03035 PF02863 Arginine repressor, C-terminal domain DK235_RS03040 PF02547 Queuosine biosynthesis protein DK235_RS03045 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DK235_RS03075 PF13193 AMP-binding enzyme C-terminal domain DK235_RS03075 PF00501 AMP-binding enzyme DK235_RS03080 PF03062 MBOAT, membrane-bound O-acyltransferase family DK235_RS03085 PF00550 Phosphopantetheine attachment site DK235_RS03090 PF04914 DltD protein DK235_RS03100 PF13409 Glutathione S-transferase, N-terminal domain DK235_RS03105 PF00849 RNA pseudouridylate synthase DK235_RS03105 PF01479 S4 domain DK235_RS03110 PF00255 Glutathione peroxidase DK235_RS03115 PF01032 FecCD transport family DK235_RS03120 PF01032 FecCD transport family DK235_RS03125 PF01497 Periplasmic binding protein DK235_RS03130 PF00005 ABC transporter DK235_RS03135 PF08245 Mur ligase middle domain DK235_RS03135 PF02875 Mur ligase family, glutamate ligase domain DK235_RS03140 PF01553 Acyltransferase DK235_RS03145 PF10531 SLBB domain DK235_RS03150 PF03772 Competence protein DK235_RS03150 PF00753 Metallo-beta-lactamase superfamily DK235_RS03150 PF13567 Domain of unknown function (DUF4131) DK235_RS03160 PF00571 CBS domain DK235_RS03175 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK235_RS03175 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK235_RS03180 PF02223 Thymidylate kinase DK235_RS03185 PF09115 DNA polymerase III, delta subunit, C terminal DK235_RS03190 PF06156 Initiation control protein YabA DK235_RS03195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DK235_RS03200 PF00266 Aminotransferase class-V DK235_RS03210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DK235_RS03210 PF01842 ACT domain DK235_RS03210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DK235_RS03215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DK235_RS03215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DK235_RS03220 PF03960 ArsC family DK235_RS03230 PF03372 Endonuclease/Exonuclease/phosphatase family DK235_RS03240 PF13520 Amino acid permease DK235_RS03275 PF01555 DNA methylase DK235_RS03275 PF18273 Type III R-M EcoP15I C-terminal domain DK235_RS03280 PF18273 Type III R-M EcoP15I C-terminal domain DK235_RS03280 PF01555 DNA methylase DK235_RS03285 PF04851 Type III restriction enzyme, res subunit DK235_RS03285 PF08774 VRR-NUC domain DK235_RS03295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK235_RS03295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK235_RS03295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK235_RS03295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK235_RS03300 PF12822 ECF transporter, substrate-specific component DK235_RS03305 PF02441 Flavoprotein DK235_RS03310 PF04127 DNA / pantothenate metabolism flavoprotein DK235_RS03310 PF02441 Flavoprotein DK235_RS03315 PF01268 Formate--tetrahydrofolate ligase DK235_RS03325 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS03325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK235_RS03330 PF18766 SWI2/SNF2 ATPase DK235_RS03330 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DK235_RS03330 PF11867 Domain of unknown function (DUF3387) DK235_RS03340 PF01420 Type I restriction modification DNA specificity domain DK235_RS03375 PF13187 4Fe-4S dicluster domain DK235_RS03375 PF04055 Radical SAM superfamily DK235_RS03380 PF00455 DeoR C terminal sensor domain DK235_RS03380 PF08220 DeoR-like helix-turn-helix domain DK235_RS03385 PF04198 Putative sugar-binding domain DK235_RS03385 PF13936 Helix-turn-helix domain DK235_RS03390 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DK235_RS03395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK235_RS03400 PF02378 Phosphotransferase system, EIIC DK235_RS03405 PF02901 Pyruvate formate lyase-like DK235_RS03405 PF01228 Glycine radical DK235_RS03410 PF00923 Transaldolase/Fructose-6-phosphate aldolase DK235_RS03420 PF00465 Iron-containing alcohol dehydrogenase DK235_RS03425 PF02774 Semialdehyde dehydrogenase, dimerisation domain DK235_RS03425 PF01118 Semialdehyde dehydrogenase, NAD binding domain DK235_RS03430 PF00701 Dihydrodipicolinate synthetase family DK235_RS03435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK235_RS03435 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS03445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DK235_RS03445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DK235_RS03450 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DK235_RS03450 PF01266 FAD dependent oxidoreductase DK235_RS03455 PF00230 Major intrinsic protein DK235_RS03460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK235_RS03470 PF08439 Oligopeptidase F DK235_RS03470 PF01432 Peptidase family M3 DK235_RS03480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK235_RS03480 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS03485 PF00580 UvrD/REP helicase N-terminal domain DK235_RS03485 PF13361 UvrD-like helicase C-terminal domain DK235_RS03495 PF08543 Phosphomethylpyrimidine kinase DK235_RS03500 PF02110 Hydroxyethylthiazole kinase family DK235_RS03505 PF02581 Thiamine monophosphate synthase DK235_RS03515 PF01048 Phosphorylase superfamily DK235_RS03525 PF02361 Cobalt transport protein DK235_RS03530 PF00005 ABC transporter DK235_RS03535 PF00005 ABC transporter DK235_RS03540 PF13419 Haloacid dehalogenase-like hydrolase DK235_RS03570 PF00005 ABC transporter DK235_RS03575 PF02151 UvrB/uvrC motif DK235_RS03575 PF01541 GIY-YIG catalytic domain DK235_RS03575 PF08459 UvrC Helix-hairpin-helix N-terminal DK235_RS03585 PF01018 GTP1/OBG DK235_RS03585 PF01926 50S ribosome-binding GTPase DK235_RS03585 PF09269 Domain of unknown function (DUF1967) DK235_RS03595 PF04650 YSIRK type signal peptide DK235_RS03595 PF06458 MucBP domain DK235_RS03595 PF00746 LPXTG cell wall anchor motif DK235_RS03600 PF12705 PD-(D/E)XK nuclease superfamily DK235_RS03605 PF12705 PD-(D/E)XK nuclease superfamily DK235_RS03605 PF00580 UvrD/REP helicase N-terminal domain DK235_RS03605 PF13361 UvrD-like helicase C-terminal domain DK235_RS03610 PF02660 Glycerol-3-phosphate acyltransferase DK235_RS03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS03615 PF00986 DNA gyrase B subunit, carboxyl terminus DK235_RS03615 PF00204 DNA gyrase B DK235_RS03615 PF01751 Toprim domain DK235_RS03640 PF00521 DNA gyrase/topoisomerase IV, subunit A DK235_RS03640 PF03989 DNA gyrase C-terminal domain, beta-propeller DK235_RS03650 PF01063 Amino-transferase class IV DK235_RS03670 PF00575 S1 RNA binding domain DK235_RS03695 PF00266 Aminotransferase class-V DK235_RS03700 PF02568 Thiamine biosynthesis protein (ThiI) DK235_RS03700 PF02926 THUMP domain DK235_RS03705 PF05525 Branched-chain amino acid transport protein DK235_RS03710 PF00829 Ribosomal prokaryotic L21 protein DK235_RS03715 PF01016 Ribosomal L27 protein DK235_RS03725 PF03466 LysR substrate binding domain DK235_RS03725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK235_RS03730 PF01252 Signal peptidase (SPase) II DK235_RS03735 PF00849 RNA pseudouridylate synthase DK235_RS03735 PF01479 S4 domain DK235_RS03740 PF08274 PhnA Zinc-Ribbon DK235_RS03740 PF03831 PhnA domain DK235_RS03750 PF00156 Phosphoribosyl transferase domain DK235_RS03755 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DK235_RS03755 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DK235_RS03760 PF00117 Glutamine amidotransferase class-I DK235_RS03760 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DK235_RS03765 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DK235_RS03765 PF02142 MGS-like domain DK235_RS03765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK235_RS03770 PF04445 Putative SAM-dependent methyltransferase DK235_RS03775 PF01470 Pyroglutamyl peptidase DK235_RS03785 PF00886 Ribosomal protein S16 DK235_RS03795 PF00005 ABC transporter DK235_RS03795 PF00664 ABC transporter transmembrane region DK235_RS03800 PF00005 ABC transporter DK235_RS03800 PF00664 ABC transporter transmembrane region DK235_RS03805 PF01522 Polysaccharide deacetylase DK235_RS03810 PF03447 Homoserine dehydrogenase, NAD binding domain DK235_RS03810 PF00742 Homoserine dehydrogenase DK235_RS03815 PF00288 GHMP kinases N terminal domain DK235_RS03815 PF08544 GHMP kinases C terminal DK235_RS03820 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DK235_RS03820 PF01565 FAD binding domain DK235_RS03825 PF00005 ABC transporter DK235_RS03825 PF08402 TOBE domain DK235_RS03830 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS03835 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS03840 PF13416 Bacterial extracellular solute-binding protein DK235_RS03845 PF00654 Voltage gated chloride channel DK235_RS03860 PF01256 Carbohydrate kinase DK235_RS03865 PF00730 HhH-GPD superfamily base excision DNA repair protein DK235_RS03865 PF00633 Helix-hairpin-helix motif DK235_RS03865 PF10576 Iron-sulfur binding domain of endonuclease III DK235_RS03870 PF00478 IMP dehydrogenase / GMP reductase domain DK235_RS03880 PF01782 RimM N-terminal domain DK235_RS03880 PF05239 PRC-barrel domain DK235_RS03885 PF01746 tRNA (Guanine-1)-methyltransferase DK235_RS03890 PF00155 Aminotransferase class I and II DK235_RS03895 PF00455 DeoR C terminal sensor domain DK235_RS03895 PF08220 DeoR-like helix-turn-helix domain DK235_RS03900 PF00294 pfkB family carbohydrate kinase DK235_RS03905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK235_RS03905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK235_RS03915 PF02645 Uncharacterised protein, DegV family COG1307 DK235_RS03920 PF01113 Dihydrodipicolinate reductase, N-terminus DK235_RS03920 PF05173 Dihydrodipicolinate reductase, C-terminus DK235_RS03925 PF13735 tRNA nucleotidyltransferase domain 2 putative DK235_RS03925 PF12627 Probable RNA and SrmB- binding site of polymerase A DK235_RS03925 PF01743 Poly A polymerase head domain DK235_RS03930 PF00005 ABC transporter DK235_RS03930 PF12848 ABC transporter DK235_RS03930 PF16326 ABC transporter C-terminal domain DK235_RS03940 PF00480 ROK family DK235_RS03955 PF00303 Thymidylate synthase DK235_RS03960 PF00186 Dihydrofolate reductase DK235_RS03965 PF10431 C-terminal, D2-small domain, of ClpB protein DK235_RS03965 PF07724 AAA domain (Cdc48 subfamily) DK235_RS03965 PF06689 ClpX C4-type zinc finger DK235_RS03970 PF01926 50S ribosome-binding GTPase DK235_RS03975 PF00334 Nucleoside diphosphate kinase DK235_RS03985 PF03144 Elongation factor Tu domain 2 DK235_RS03985 PF14492 Elongation Factor G, domain II DK235_RS03985 PF00009 Elongation factor Tu GTP binding domain DK235_RS03985 PF06421 GTP-binding protein LepA C-terminus DK235_RS03985 PF00679 Elongation factor G C-terminus DK235_RS03990 PF01361 Tautomerase enzyme DK235_RS04000 PF00265 Thymidine kinase DK235_RS04005 PF00472 RF-1 domain DK235_RS04005 PF03462 PCRF domain DK235_RS04010 PF05175 Methyltransferase small domain DK235_RS04015 PF01300 Telomere recombination DK235_RS04015 PF03481 Putative GTP-binding controlling metal-binding DK235_RS04025 PF00464 Serine hydroxymethyltransferase DK235_RS04040 PF00106 short chain dehydrogenase DK235_RS04065 PF12102 Domain of unknown function (DUF3578) DK235_RS04065 PF07728 AAA domain (dynein-related subfamily) DK235_RS04070 PF10117 McrBC 5-methylcytosine restriction system component DK235_RS04075 PF00589 Phage integrase family DK235_RS04075 PF02899 Phage integrase, N-terminal SAM-like domain DK235_RS04135 PF02540 NAD synthase DK235_RS04135 PF00117 Glutamine amidotransferase class-I DK235_RS04135 PF00958 GMP synthase C terminal domain DK235_RS04140 PF00392 Bacterial regulatory proteins, gntR family DK235_RS04140 PF07702 UTRA domain DK235_RS04145 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DK235_RS04150 PF00448 SRP54-type protein, GTPase domain DK235_RS04150 PF02881 SRP54-type protein, helical bundle domain DK235_RS04150 PF02978 Signal peptide binding domain DK235_RS04180 PF13495 Phage integrase, N-terminal SAM-like domain DK235_RS04180 PF00589 Phage integrase family DK235_RS04185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK235_RS04185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK235_RS04185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK235_RS04185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK235_RS04190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS04190 PF00512 His Kinase A (phospho-acceptor) domain DK235_RS04195 PF00486 Transcriptional regulatory protein, C terminal DK235_RS04195 PF00072 Response regulator receiver domain DK235_RS04215 PF00005 ABC transporter DK235_RS04230 PF00005 ABC transporter DK235_RS04255 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase DK235_RS04255 PF00756 Putative esterase DK235_RS04265 PF12833 Helix-turn-helix domain DK235_RS04265 PF06445 GyrI-like small molecule binding domain DK235_RS04270 PF01134 Glucose inhibited division protein A DK235_RS04275 PF13344 Haloacid dehalogenase-like hydrolase DK235_RS04280 PF13495 Phage integrase, N-terminal SAM-like domain DK235_RS04280 PF00589 Phage integrase family DK235_RS04290 PF01381 Helix-turn-helix DK235_RS04305 PF00005 ABC transporter DK235_RS04310 PF00005 ABC transporter DK235_RS04310 PF03412 Peptidase C39 family DK235_RS04310 PF00664 ABC transporter transmembrane region DK235_RS04315 PF13575 Domain of unknown function (DUF4135) DK235_RS04315 PF05147 Lanthionine synthetase C-like protein DK235_RS04325 PF04604 Type-A lantibiotic DK235_RS04330 PF04604 Type-A lantibiotic DK235_RS04335 PF00486 Transcriptional regulatory protein, C terminal DK235_RS04335 PF00072 Response regulator receiver domain DK235_RS04345 PF03432 Relaxase/Mobilisation nuclease domain DK235_RS04370 PF06414 Zeta toxin DK235_RS04375 PF01381 Helix-turn-helix DK235_RS04430 PF02229 Transcriptional Coactivator p15 (PC4) DK235_RS04435 PF17762 HTH domain found in ParB protein DK235_RS04435 PF02195 ParB-like nuclease domain DK235_RS04440 PF01076 Plasmid recombination enzyme DK235_RS04470 PF00679 Elongation factor G C-terminus DK235_RS04470 PF14492 Elongation Factor G, domain II DK235_RS04470 PF03764 Elongation factor G, domain IV DK235_RS04470 PF00009 Elongation factor Tu GTP binding domain DK235_RS04485 PF00398 Ribosomal RNA adenine dimethylase DK235_RS04490 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) DK235_RS04505 PF01348 Type II intron maturase DK235_RS04505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DK235_RS04525 PF18652 Adhesin P1 N-terminal domain DK235_RS04525 PF17998 Cell surface antigen I/II C2 terminal domain DK235_RS04525 PF16364 Cell surface antigen C-terminus DK235_RS04525 PF08363 Glucan-binding protein C DK235_RS04525 PF06696 Streptococcal surface antigen repeat DK235_RS04595 PF00145 C-5 cytosine-specific DNA methylase DK235_RS04610 PF00542 Ribosomal protein L7/L12 C-terminal domain DK235_RS04610 PF16320 Ribosomal protein L7/L12 dimerisation domain DK235_RS04615 PF00466 Ribosomal protein L10 DK235_RS04620 PF01131 DNA topoisomerase DK235_RS04620 PF01751 Toprim domain DK235_RS04620 PF01396 Topoisomerase DNA binding C4 zinc finger DK235_RS04625 PF02481 DNA recombination-mediator protein A DK235_RS04625 PF18255 DNA processing protein A sterile alpha motif domain DK235_RS04630 PF12464 Maltose acetyltransferase DK235_RS04630 PF14602 Hexapeptide repeat of succinyl-transferase DK235_RS04635 PF02583 Metal-sensitive transcriptional repressor DK235_RS04640 PF00581 Rhodanese-like domain DK235_RS04645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK235_RS04645 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS04655 PF03006 Haemolysin-III related DK235_RS04665 PF01351 Ribonuclease HII DK235_RS04670 PF01926 50S ribosome-binding GTPase DK235_RS04680 PF02545 Maf-like protein DK235_RS04685 PF00149 Calcineurin-like phosphoesterase DK235_RS04685 PF02872 5'-nucleotidase, C-terminal domain DK235_RS04690 PF01979 Amidohydrolase family DK235_RS04695 PF03167 Uracil DNA glycosylase superfamily DK235_RS04700 PF00535 Glycosyl transferase family 2 DK235_RS04705 PF00156 Phosphoribosyl transferase domain DK235_RS04710 PF00719 Inorganic pyrophosphatase DK235_RS04715 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DK235_RS04720 PF01180 Dihydroorotate dehydrogenase DK235_RS04725 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DK235_RS04730 PF03466 LysR substrate binding domain DK235_RS04730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DK235_RS04735 PF00483 Nucleotidyl transferase DK235_RS04740 PF00132 Bacterial transferase hexapeptide (six repeats) DK235_RS04740 PF00483 Nucleotidyl transferase DK235_RS04745 PF08323 Starch synthase catalytic domain DK235_RS04745 PF00534 Glycosyl transferases group 1 DK235_RS04750 PF00128 Alpha amylase, catalytic domain DK235_RS04750 PF02806 Alpha amylase, C-terminal all-beta domain DK235_RS04750 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK235_RS04755 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK235_RS04760 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK235_RS04765 PF00293 NUDIX domain DK235_RS04775 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region DK235_RS04775 PF07501 G5 domain DK235_RS04775 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region DK235_RS04775 PF04650 YSIRK type signal peptide DK235_RS04790 PF12344 Ultra-violet resistance protein B DK235_RS04790 PF02151 UvrB/uvrC motif DK235_RS04790 PF17757 UvrB interaction domain DK235_RS04790 PF04851 Type III restriction enzyme, res subunit DK235_RS04790 PF00271 Helicase conserved C-terminal domain DK235_RS04795 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK235_RS04800 PF00005 ABC transporter DK235_RS04810 PF12848 ABC transporter DK235_RS04810 PF16326 ABC transporter C-terminal domain DK235_RS04810 PF00005 ABC transporter DK235_RS04815 PF01053 Cys/Met metabolism PLP-dependent enzyme DK235_RS04830 PF01263 Aldose 1-epimerase DK235_RS04835 PF00232 Glycosyl hydrolase family 1 DK235_RS04840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK235_RS04840 PF02378 Phosphotransferase system, EIIC DK235_RS04845 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DK235_RS04850 PF03123 CAT RNA binding domain DK235_RS04850 PF00874 PRD domain DK235_RS04855 PF01791 DeoC/LacD family aldolase DK235_RS04865 PF02502 Ribose/Galactose Isomerase DK235_RS04870 PF02502 Ribose/Galactose Isomerase DK235_RS04875 PF08220 DeoR-like helix-turn-helix domain DK235_RS04875 PF00455 DeoR C terminal sensor domain DK235_RS04900 PF08671 Anti-repressor SinI DK235_RS04900 PF01381 Helix-turn-helix DK235_RS04905 PF14815 NUDIX domain DK235_RS04905 PF00730 HhH-GPD superfamily base excision DNA repair protein DK235_RS04915 PF00664 ABC transporter transmembrane region DK235_RS04915 PF00005 ABC transporter DK235_RS04920 PF00005 ABC transporter DK235_RS04920 PF00664 ABC transporter transmembrane region DK235_RS04925 PF01515 Phosphate acetyl/butaryl transferase DK235_RS04930 PF00849 RNA pseudouridylate synthase DK235_RS04935 PF01513 ATP-NAD kinase DK235_RS04940 PF04607 Region found in RelA / SpoT proteins DK235_RS04945 PF01928 CYTH domain DK235_RS04950 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DK235_RS04950 PF14572 Phosphoribosyl synthetase-associated domain DK235_RS04955 PF00266 Aminotransferase class-V DK235_RS04970 PF02629 CoA binding domain DK235_RS04970 PF06971 Putative DNA-binding protein N-terminus DK235_RS04975 PF07722 Peptidase C26 DK235_RS04980 PF04002 RadC-like JAB domain DK235_RS04985 PF04203 Sortase domain DK235_RS04990 PF03989 DNA gyrase C-terminal domain, beta-propeller DK235_RS04990 PF00521 DNA gyrase/topoisomerase IV, subunit A DK235_RS04995 PF00056 lactate/malate dehydrogenase, NAD binding domain DK235_RS04995 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DK235_RS05020 PF02608 ABC transporter substrate-binding protein PnrA-like DK235_RS05025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK235_RS05030 PF01791 DeoC/LacD family aldolase DK235_RS05035 PF02885 Glycosyl transferase family, helical bundle domain DK235_RS05035 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DK235_RS05035 PF00591 Glycosyl transferase family, a/b domain DK235_RS05040 PF05175 Methyltransferase small domain DK235_RS05045 PF00485 Phosphoribulokinase / Uridine kinase family DK235_RS05050 PF01649 Ribosomal protein S20 DK235_RS05055 PF01797 Transposase IS200 like DK235_RS05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS05065 PF00512 His Kinase A (phospho-acceptor) domain DK235_RS05070 PF00072 Response regulator receiver domain DK235_RS05070 PF00486 Transcriptional regulatory protein, C terminal DK235_RS05085 PF01895 PhoU domain DK235_RS05090 PF00005 ABC transporter DK235_RS05095 PF00005 ABC transporter DK235_RS05100 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS05105 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS05110 PF12849 PBP superfamily domain DK235_RS05115 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DK235_RS05115 PF17126 RsmF rRNA methyltransferase first C-terminal domain DK235_RS05115 PF01189 16S rRNA methyltransferase RsmB/F DK235_RS05120 PF00459 Inositol monophosphatase family DK235_RS05125 PF05256 Uncharacterised protein family (UPF0223) DK235_RS05130 PF03960 ArsC family DK235_RS05135 PF07885 Ion channel DK235_RS05140 PF06574 FAD synthetase DK235_RS05140 PF01687 Riboflavin kinase DK235_RS05145 PF01509 TruB family pseudouridylate synthase (N terminal domain) DK235_RS05145 PF16198 tRNA pseudouridylate synthase B C-terminal domain DK235_RS05205 PF07687 Peptidase dimerisation domain DK235_RS05205 PF01546 Peptidase family M20/M25/M40 DK235_RS05240 PF06993 Protein of unknown function (DUF1304) DK235_RS05245 PF01047 MarR family DK235_RS05260 PF01545 Cation efflux family DK235_RS05260 PF16916 Dimerisation domain of Zinc Transporter DK235_RS05270 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DK235_RS05275 PF02152 Dihydroneopterin aldolase DK235_RS05280 PF00809 Pterin binding enzyme DK235_RS05285 PF01227 GTP cyclohydrolase I DK235_RS05290 PF00293 NUDIX domain DK235_RS05315 PF03147 Ferredoxin-fold anticodon binding domain DK235_RS05315 PF03484 tRNA synthetase B5 domain DK235_RS05315 PF03483 B3/4 domain DK235_RS05315 PF01588 Putative tRNA binding domain DK235_RS05315 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DK235_RS05320 PF13673 Acetyltransferase (GNAT) domain DK235_RS05325 PF01409 tRNA synthetases class II core domain (F) DK235_RS05325 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DK235_RS05330 PF00933 Glycosyl hydrolase family 3 N terminal domain DK235_RS05335 PF00933 Glycosyl hydrolase family 3 N terminal domain DK235_RS05345 PF00106 short chain dehydrogenase DK235_RS05350 PF03786 D-mannonate dehydratase (UxuA) DK235_RS05355 PF02614 Glucuronate isomerase DK235_RS05360 PF01081 KDPG and KHG aldolase DK235_RS05365 PF07729 FCD domain DK235_RS05365 PF00392 Bacterial regulatory proteins, gntR family DK235_RS05370 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DK235_RS05370 PF00703 Glycosyl hydrolases family 2 DK235_RS05370 PF02837 Glycosyl hydrolases family 2, sugar binding domain DK235_RS05375 PF00294 pfkB family carbohydrate kinase DK235_RS05385 PF01223 DNA/RNA non-specific endonuclease DK235_RS05390 PF11772 DNA-directed RNA polymerase subunit beta DK235_RS05395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK235_RS05405 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DK235_RS05405 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DK235_RS05410 PF02874 ATP synthase alpha/beta family, beta-barrel domain DK235_RS05410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DK235_RS05415 PF00231 ATP synthase DK235_RS05420 PF00306 ATP synthase alpha/beta chain, C terminal domain DK235_RS05420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DK235_RS05420 PF02874 ATP synthase alpha/beta family, beta-barrel domain DK235_RS05425 PF00213 ATP synthase delta (OSCP) subunit DK235_RS05430 PF00430 ATP synthase B/B' CF(0) DK235_RS05435 PF00119 ATP synthase A chain DK235_RS05440 PF00137 ATP synthase subunit C DK235_RS05445 PF00781 Diacylglycerol kinase catalytic domain DK235_RS05450 PF12826 Helix-hairpin-helix motif DK235_RS05450 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DK235_RS05450 PF01653 NAD-dependent DNA ligase adenylation domain DK235_RS05450 PF00533 BRCA1 C Terminus (BRCT) domain DK235_RS05450 PF03120 NAD-dependent DNA ligase OB-fold domain DK235_RS05460 PF03773 Predicted permease DK235_RS05465 PF09323 Domain of unknown function (DUF1980) DK235_RS05470 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DK235_RS05470 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DK235_RS05485 PF00448 SRP54-type protein, GTPase domain DK235_RS05485 PF02881 SRP54-type protein, helical bundle domain DK235_RS05500 PF02463 RecF/RecN/SMC N terminal domain DK235_RS05500 PF06470 SMC proteins Flexible Hinge Domain DK235_RS05505 PF14622 Ribonuclease-III-like DK235_RS05505 PF00035 Double-stranded RNA binding motif DK235_RS05525 PF00665 Integrase core domain DK235_RS05525 PF13936 Helix-turn-helix domain DK235_RS05530 PF08903 Domain of unknown function (DUF1846) DK235_RS05535 PF05524 PEP-utilising enzyme, N-terminal DK235_RS05535 PF02896 PEP-utilising enzyme, TIM barrel domain DK235_RS05535 PF00391 PEP-utilising enzyme, mobile domain DK235_RS05540 PF00381 PTS HPr component phosphorylation site DK235_RS05545 PF00180 Isocitrate/isopropylmalate dehydrogenase DK235_RS05550 PF00285 Citrate synthase, C-terminal domain DK235_RS05555 PF00694 Aconitase C-terminal domain DK235_RS05555 PF00330 Aconitase family (aconitate hydratase) DK235_RS05560 PF00462 Glutaredoxin DK235_RS05565 PF08343 Ribonucleotide reductase N-terminal DK235_RS05565 PF00317 Ribonucleotide reductase, all-alpha domain DK235_RS05565 PF02867 Ribonucleotide reductase, barrel domain DK235_RS05575 PF00268 Ribonucleotide reductase, small chain DK235_RS05580 PF00356 Bacterial regulatory proteins, lacI family DK235_RS05595 PF02278 Polysaccharide lyase family 8, super-sandwich domain DK235_RS05595 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain DK235_RS05595 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DK235_RS05600 PF02278 Polysaccharide lyase family 8, super-sandwich domain DK235_RS05600 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DK235_RS05600 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain DK235_RS05605 PF02278 Polysaccharide lyase family 8, super-sandwich domain DK235_RS05605 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DK235_RS05605 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain DK235_RS05615 PF03613 PTS system mannose/fructose/sorbose family IID component DK235_RS05625 PF03830 PTS system sorbose subfamily IIB component DK235_RS05630 PF07470 Glycosyl Hydrolase Family 88 DK235_RS05690 PF01381 Helix-turn-helix DK235_RS05710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DK235_RS05710 PF01411 tRNA synthetases class II (A) DK235_RS05710 PF02272 DHHA1 domain DK235_RS05720 PF13145 PPIC-type PPIASE domain DK235_RS05725 PF01596 O-methyltransferase DK235_RS05740 PF08439 Oligopeptidase F DK235_RS05740 PF01432 Peptidase family M3 DK235_RS05750 PF09334 tRNA synthetases class I (M) DK235_RS05750 PF01588 Putative tRNA binding domain DK235_RS05760 PF00793 DAHP synthetase I family DK235_RS05765 PF00793 DAHP synthetase I family DK235_RS05770 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DK235_RS05770 PF08501 Shikimate dehydrogenase substrate binding domain DK235_RS05775 PF01761 3-dehydroquinate synthase DK235_RS05780 PF00005 ABC transporter DK235_RS05785 PF02653 Branched-chain amino acid transport system / permease component DK235_RS05800 PF01791 DeoC/LacD family aldolase DK235_RS05805 PF01979 Amidohydrolase family DK235_RS05810 PF06133 Control of competence regulator ComK, YlbF/YmcA DK235_RS05815 PF02153 Prephenate dehydrogenase DK235_RS05820 PF01264 Chorismate synthase DK235_RS05825 PF01487 Type I 3-dehydroquinase DK235_RS05830 PF10672 S-adenosylmethionine-dependent methyltransferase DK235_RS05830 PF17785 PUA-like domain DK235_RS05835 PF00884 Sulfatase DK235_RS05845 PF00453 Ribosomal protein L20 DK235_RS05850 PF01632 Ribosomal protein L35 DK235_RS05855 PF00707 Translation initiation factor IF-3, C-terminal domain DK235_RS05855 PF05198 Translation initiation factor IF-3, N-terminal domain DK235_RS05860 PF02224 Cytidylate kinase DK235_RS05890 PF00535 Glycosyl transferase family 2 DK235_RS05895 PF13439 Glycosyltransferase Family 4 DK235_RS05895 PF00534 Glycosyl transferases group 1 DK235_RS05905 PF01501 Glycosyl transferase family 8 DK235_RS05905 PF00535 Glycosyl transferase family 2 DK235_RS05910 PF01501 Glycosyl transferase family 8 DK235_RS05930 PF00005 ABC transporter DK235_RS05930 PF14524 Wzt C-terminal domain DK235_RS05940 PF00535 Glycosyl transferase family 2 DK235_RS05960 PF05036 Sporulation related domain DK235_RS05960 PF01520 N-acetylmuramoyl-L-alanine amidase DK235_RS05970 PF04321 RmlD substrate binding domain DK235_RS05975 PF16363 GDP-mannose 4,6 dehydratase DK235_RS05985 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DK235_RS05990 PF00483 Nucleotidyl transferase DK235_RS06000 PF01784 NIF3 (NGG1p interacting factor 3) DK235_RS06005 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DK235_RS06015 PF04204 Homoserine O-succinyltransferase DK235_RS06020 PF00156 Phosphoribosyl transferase domain DK235_RS06030 PF01368 DHH family DK235_RS06030 PF17768 RecJ OB domain DK235_RS06030 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DK235_RS06030 PF02272 DHHA1 domain DK235_RS06035 PF13091 PLD-like domain DK235_RS06045 PF00106 short chain dehydrogenase DK235_RS06050 PF00753 Metallo-beta-lactamase superfamily DK235_RS06050 PF12706 Beta-lactamase superfamily domain DK235_RS06060 PF01926 50S ribosome-binding GTPase DK235_RS06060 PF13167 GTP-binding GTPase N-terminal DK235_RS06060 PF16360 GTP-binding GTPase Middle Region DK235_RS06075 PF07690 Major Facilitator Superfamily DK235_RS06080 PF01717 Cobalamin-independent synthase, Catalytic domain DK235_RS06085 PF02562 PhoH-like protein DK235_RS06090 PF06855 YozE SAM-like fold DK235_RS06100 PF08546 Ketopantoate reductase PanE/ApbA C terminal DK235_RS06100 PF02558 Ketopantoate reductase PanE/ApbA DK235_RS06105 PF13509 S1 domain DK235_RS06105 PF17783 CvfB-like winged helix domain DK235_RS06110 PF01765 Ribosome recycling factor DK235_RS06115 PF00696 Amino acid kinase family DK235_RS06120 PF01943 Polysaccharide biosynthesis protein DK235_RS06120 PF14667 Polysaccharide biosynthesis C-terminal domain DK235_RS06125 PF02798 Glutathione S-transferase, N-terminal domain DK235_RS06135 PF00687 Ribosomal protein L1p/L10e family DK235_RS06140 PF03946 Ribosomal protein L11, N-terminal domain DK235_RS06140 PF00298 Ribosomal protein L11, RNA binding domain DK235_RS06150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DK235_RS06155 PF01580 FtsK/SpoIIIE family DK235_RS06155 PF09397 Ftsk gamma domain DK235_RS06155 PF17854 FtsK alpha domain DK235_RS06160 PF08244 Glycosyl hydrolases family 32 C terminal DK235_RS06160 PF00251 Glycosyl hydrolases family 32 N-terminal domain DK235_RS06170 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS06175 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS06180 PF00356 Bacterial regulatory proteins, lacI family DK235_RS06200 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DK235_RS06205 PF13683 Integrase core domain DK235_RS06205 PF01610 Transposase DK235_RS06210 PF00009 Elongation factor Tu GTP binding domain DK235_RS06210 PF03144 Elongation factor Tu domain 2 DK235_RS06210 PF16658 Class II release factor RF3, C-terminal domain DK235_RS06225 PF01225 Mur ligase family, catalytic domain DK235_RS06225 PF08245 Mur ligase middle domain DK235_RS06225 PF02875 Mur ligase family, glutamate ligase domain DK235_RS06235 PF01820 D-ala D-ala ligase N-terminus DK235_RS06235 PF07478 D-ala D-ala ligase C-terminus DK235_RS06240 PF02132 RecR protein DK235_RS06240 PF13662 Toprim domain DK235_RS06245 PF03717 Penicillin-binding Protein dimerisation domain DK235_RS06245 PF00905 Penicillin binding protein transpeptidase domain DK235_RS06250 PF00005 ABC transporter DK235_RS06260 PF00753 Metallo-beta-lactamase superfamily DK235_RS06265 PF00512 His Kinase A (phospho-acceptor) domain DK235_RS06265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS06265 PF00672 HAMP domain DK235_RS06265 PF13426 PAS domain DK235_RS06270 PF00072 Response regulator receiver domain DK235_RS06270 PF00486 Transcriptional regulatory protein, C terminal DK235_RS06275 PF00005 ABC transporter DK235_RS06280 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK235_RS06285 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS06290 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS06295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK235_RS06295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DK235_RS06295 PF02824 TGS domain DK235_RS06295 PF03129 Anticodon binding domain DK235_RS06310 PF00534 Glycosyl transferases group 1 DK235_RS06310 PF13439 Glycosyltransferase Family 4 DK235_RS06315 PF13439 Glycosyltransferase Family 4 DK235_RS06315 PF00534 Glycosyl transferases group 1 DK235_RS06320 PF12892 Spy0128-like isopeptide containing domain DK235_RS06325 PF00356 Bacterial regulatory proteins, lacI family DK235_RS06330 PF00557 Metallopeptidase family M24 DK235_RS06330 PF01321 Creatinase/Prolidase N-terminal domain DK235_RS06335 PF01702 Queuine tRNA-ribosyltransferase DK235_RS06345 PF13380 CoA binding domain DK235_RS06355 PF00476 DNA polymerase family A DK235_RS06355 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DK235_RS06355 PF01367 5'-3' exonuclease, C-terminal SAM fold DK235_RS06370 PF00005 ABC transporter DK235_RS06380 PF08534 Redoxin DK235_RS06385 PF00403 Heavy-metal-associated domain DK235_RS06390 PF03577 Peptidase family C69 DK235_RS06395 PF09313 Domain of unknown function (DUF1971) DK235_RS06395 PF03848 Tellurite resistance protein TehB DK235_RS06400 PF08240 Alcohol dehydrogenase GroES-like domain DK235_RS06400 PF00107 Zinc-binding dehydrogenase DK235_RS06405 PF01668 SmpB protein DK235_RS06410 PF00575 S1 RNA binding domain DK235_RS06410 PF00773 RNB domain DK235_RS06410 PF08206 Ribonuclease B OB domain DK235_RS06410 PF17876 Cold shock domain DK235_RS06420 PF00471 Ribosomal protein L33 DK235_RS06425 PF00083 Sugar (and other) transporter DK235_RS06425 PF07690 Major Facilitator Superfamily DK235_RS06430 PF01121 Dephospho-CoA kinase DK235_RS06435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DK235_RS06435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DK235_RS06435 PF06827 Zinc finger found in FPG and IleRS DK235_RS06440 PF07650 KH domain DK235_RS06440 PF01926 50S ribosome-binding GTPase DK235_RS06445 PF01219 Prokaryotic diacylglycerol kinase DK235_RS06450 PF02130 Uncharacterized protein family UPF0054 DK235_RS06455 PF01380 SIS domain DK235_RS06455 PF01418 Helix-turn-helix domain, rpiR family DK235_RS06460 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK235_RS06460 PF02378 Phosphotransferase system, EIIC DK235_RS06460 PF00367 phosphotransferase system, EIIB DK235_RS06465 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DK235_RS06470 PF17440 Thiol-activated cytolysin beta sandwich domain DK235_RS06470 PF01289 Thiol-activated cytolysin DK235_RS06475 PF13419 Haloacid dehalogenase-like hydrolase DK235_RS06480 PF00664 ABC transporter transmembrane region DK235_RS06480 PF00005 ABC transporter DK235_RS06485 PF00664 ABC transporter transmembrane region DK235_RS06485 PF00005 ABC transporter DK235_RS06500 PF07664 Ferrous iron transport protein B C terminus DK235_RS06500 PF02421 Ferrous iron transport protein B DK235_RS06500 PF07670 Nucleoside recognition DK235_RS06500 PF17910 FeoB cytosolic helical domain DK235_RS06510 PF18075 FtsX extracellular domain DK235_RS06510 PF02687 FtsX-like permease family DK235_RS06515 PF00005 ABC transporter DK235_RS06530 PF04892 VanZ like family DK235_RS06550 PF00690 Cation transporter/ATPase, N-terminus DK235_RS06550 PF00689 Cation transporting ATPase, C-terminus DK235_RS06555 PF00665 Integrase core domain DK235_RS06555 PF13936 Helix-turn-helix domain DK235_RS06590 PF01883 Iron-sulfur cluster assembly protein DK235_RS06595 PF04542 Sigma-70 region 2 DK235_RS06595 PF04539 Sigma-70 region 3 DK235_RS06595 PF00140 Sigma-70 factor, region 1.2 DK235_RS06595 PF03979 Sigma-70 factor, region 1.1 DK235_RS06595 PF04545 Sigma-70, region 4 DK235_RS06600 PF10410 DnaB-helicase binding domain of primase DK235_RS06600 PF01807 CHC2 zinc finger DK235_RS06600 PF08275 DNA primase catalytic core, N-terminal domain DK235_RS06605 PF01741 Large-conductance mechanosensitive channel, MscL DK235_RS06610 PF16363 GDP-mannose 4,6 dehydratase DK235_RS06615 PF01165 Ribosomal protein S21 DK235_RS06625 PF13344 Haloacid dehalogenase-like hydrolase DK235_RS06630 PF00293 NUDIX domain DK235_RS06640 PF06969 HemN C-terminal domain DK235_RS06640 PF04055 Radical SAM superfamily DK235_RS06650 PF00343 Carbohydrate phosphorylase DK235_RS06655 PF01048 Phosphorylase superfamily DK235_RS06660 PF01048 Phosphorylase superfamily DK235_RS06670 PF01676 Metalloenzyme superfamily DK235_RS06675 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DK235_RS06680 PF01420 Type I restriction modification DNA specificity domain DK235_RS06685 PF01420 Type I restriction modification DNA specificity domain DK235_RS06690 PF02384 N-6 DNA Methylase DK235_RS06690 PF12161 HsdM N-terminal domain DK235_RS06695 PF04851 Type III restriction enzyme, res subunit DK235_RS06695 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) DK235_RS06695 PF00271 Helicase conserved C-terminal domain DK235_RS06695 PF08463 EcoEI R protein C-terminal DK235_RS06700 PF12631 MnmE helical domain DK235_RS06700 PF10396 GTP-binding protein TrmE N-terminus DK235_RS06700 PF01926 50S ribosome-binding GTPase DK235_RS06715 PF15975 Flotillin DK235_RS06715 PF01145 SPFH domain / Band 7 family DK235_RS06720 PF04011 LemA family DK235_RS06730 PF03167 Uracil DNA glycosylase superfamily DK235_RS06740 PF01546 Peptidase family M20/M25/M40 DK235_RS06745 PF00375 Sodium:dicarboxylate symporter family DK235_RS06765 PF08241 Methyltransferase domain DK235_RS06770 PF12848 ABC transporter DK235_RS06770 PF00005 ABC transporter DK235_RS06775 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DK235_RS06775 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DK235_RS06775 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DK235_RS06775 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DK235_RS06785 PF02457 DisA bacterial checkpoint controller nucleotide-binding DK235_RS06790 PF08245 Mur ligase middle domain DK235_RS06790 PF08353 Domain of unknown function (DUF1727) DK235_RS06795 PF07685 CobB/CobQ-like glutamine amidotransferase domain DK235_RS06800 PF13847 Methyltransferase domain DK235_RS06810 PF00005 ABC transporter DK235_RS06810 PF16326 ABC transporter C-terminal domain DK235_RS06810 PF12848 ABC transporter DK235_RS06825 PF00756 Putative esterase DK235_RS06830 PF00753 Metallo-beta-lactamase superfamily DK235_RS06830 PF17770 Ribonuclease J C-terminal domain DK235_RS06830 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DK235_RS06845 PF00005 ABC transporter DK235_RS06845 PF08402 TOBE domain DK235_RS06860 PF00232 Glycosyl hydrolase family 1 DK235_RS06865 PF02378 Phosphotransferase system, EIIC DK235_RS06865 PF00367 phosphotransferase system, EIIB DK235_RS06865 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK235_RS06870 PF03123 CAT RNA binding domain DK235_RS06870 PF00874 PRD domain DK235_RS06875 PF05670 NFACT protein RNA binding domain DK235_RS06880 PF03306 Alpha-acetolactate decarboxylase DK235_RS06890 PF01594 AI-2E family transporter DK235_RS06895 PF10282 Lactonase, 7-bladed beta-propeller DK235_RS06905 PF13419 Haloacid dehalogenase-like hydrolase DK235_RS06920 PF00113 Enolase, C-terminal TIM barrel domain DK235_RS06920 PF03952 Enolase, N-terminal domain DK235_RS06935 PF02595 Glycerate kinase family DK235_RS06940 PF13419 Haloacid dehalogenase-like hydrolase DK235_RS06955 PF06160 Septation ring formation regulator, EzrA DK235_RS06960 PF00204 DNA gyrase B DK235_RS06960 PF01751 Toprim domain DK235_RS06960 PF00986 DNA gyrase B subunit, carboxyl terminus DK235_RS06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS06965 PF01965 DJ-1/PfpI family DK235_RS06970 PF01098 Cell cycle protein DK235_RS06975 PF00589 Phage integrase family DK235_RS07050 PF01381 Helix-turn-helix DK235_RS07060 PF00589 Phage integrase family DK235_RS07060 PF14659 Phage integrase, N-terminal SAM-like domain DK235_RS07065 PF01197 Ribosomal protein L31 DK235_RS07070 PF02424 ApbE family DK235_RS07075 PF02272 DHHA1 domain DK235_RS07075 PF01368 DHH family DK235_RS07080 PF00258 Flavodoxin DK235_RS07085 PF00253 Ribosomal protein S14p/S29e DK235_RS07090 PF02153 Prephenate dehydrogenase DK235_RS07090 PF01817 Chorismate mutase type II DK235_RS07095 PF00654 Voltage gated chloride channel DK235_RS07105 PF00149 Calcineurin-like phosphoesterase DK235_RS07105 PF02872 5'-nucleotidase, C-terminal domain DK235_RS07105 PF17936 Bacterial Ig domain DK235_RS07110 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DK235_RS07110 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DK235_RS07115 PF06144 DNA polymerase III, delta subunit DK235_RS07125 PF02677 Epoxyqueuosine reductase QueH DK235_RS07130 PF00005 ABC transporter DK235_RS07135 PF12399 Branched-chain amino acid ATP-binding cassette transporter DK235_RS07135 PF00005 ABC transporter DK235_RS07140 PF02653 Branched-chain amino acid transport system / permease component DK235_RS07140 PF11862 Domain of unknown function (DUF3382) DK235_RS07145 PF02653 Branched-chain amino acid transport system / permease component DK235_RS07150 PF13458 Periplasmic binding protein DK235_RS07155 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DK235_RS07160 PF00574 Clp protease DK235_RS07170 PF00128 Alpha amylase, catalytic domain DK235_RS07170 PF16657 Maltogenic Amylase, C-terminal domain DK235_RS07175 PF00128 Alpha amylase, catalytic domain DK235_RS07180 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS07185 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS07190 PF01547 Bacterial extracellular solute-binding protein DK235_RS07195 PF16875 Glycosyl hydrolase family 36 N-terminal domain DK235_RS07195 PF16874 Glycosyl hydrolase family 36 C-terminal domain DK235_RS07200 PF02311 AraC-like ligand binding domain DK235_RS07200 PF12833 Helix-turn-helix domain DK235_RS07205 PF00155 Aminotransferase class I and II DK235_RS07210 PF01053 Cys/Met metabolism PLP-dependent enzyme DK235_RS07230 PF05175 Methyltransferase small domain DK235_RS07235 PF01541 GIY-YIG catalytic domain DK235_RS07245 PF02525 Flavodoxin-like fold DK235_RS07260 PF01022 Bacterial regulatory protein, arsR family DK235_RS07265 PF00270 DEAD/DEAH box helicase DK235_RS07265 PF00271 Helicase conserved C-terminal domain DK235_RS07270 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK235_RS07270 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK235_RS07275 PF08000 Bacterial PH domain DK235_RS07300 PF01048 Phosphorylase superfamily DK235_RS07310 PF00293 NUDIX domain DK235_RS07315 PF14602 Hexapeptide repeat of succinyl-transferase DK235_RS07315 PF00132 Bacterial transferase hexapeptide (six repeats) DK235_RS07315 PF12804 MobA-like NTP transferase domain DK235_RS07355 PF01797 Transposase IS200 like DK235_RS07360 PF02687 FtsX-like permease family DK235_RS07365 PF00005 ABC transporter DK235_RS07370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS07375 PF00072 Response regulator receiver domain DK235_RS07375 PF00486 Transcriptional regulatory protein, C terminal DK235_RS07385 PF00155 Aminotransferase class I and II DK235_RS07395 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS07400 PF00571 CBS domain DK235_RS07400 PF00005 ABC transporter DK235_RS07420 PF01790 Prolipoprotein diacylglyceryl transferase DK235_RS07425 PF07475 HPr Serine kinase C-terminal domain DK235_RS07425 PF02603 HPr Serine kinase N terminus DK235_RS07430 PF01238 Phosphomannose isomerase type I DK235_RS07450 PF17283 SprT-like zinc ribbon domain DK235_RS07450 PF10263 SprT-like family DK235_RS07455 PF17674 HHH domain DK235_RS07455 PF16921 Tex protein YqgF-like domain DK235_RS07455 PF00575 S1 RNA binding domain DK235_RS07455 PF09371 Tex-like protein N-terminal domain DK235_RS07460 PF00248 Aldo/keto reductase family DK235_RS07465 PF06177 QueT transporter DK235_RS07470 PF04138 GtrA-like protein DK235_RS07480 PF00557 Metallopeptidase family M24 DK235_RS07490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DK235_RS07495 PF02525 Flavodoxin-like fold DK235_RS07500 PF02772 S-adenosylmethionine synthetase, central domain DK235_RS07500 PF02773 S-adenosylmethionine synthetase, C-terminal domain DK235_RS07500 PF00438 S-adenosylmethionine synthetase, N-terminal domain DK235_RS07505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DK235_RS07515 PF05343 M42 glutamyl aminopeptidase DK235_RS07530 PF12169 DNA polymerase III subunits gamma and tau domain III DK235_RS07535 PF13185 GAF domain DK235_RS07545 PF10400 Virulence activator alpha C-term DK235_RS07545 PF03551 Transcriptional regulator PadR-like family DK235_RS07550 PF00485 Phosphoribulokinase / Uridine kinase family DK235_RS07560 PF00271 Helicase conserved C-terminal domain DK235_RS07560 PF00270 DEAD/DEAH box helicase DK235_RS07565 PF01522 Polysaccharide deacetylase DK235_RS07565 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain DK235_RS07580 PF00300 Histidine phosphatase superfamily (branch 1) DK235_RS07585 PF02803 Thiolase, C-terminal domain DK235_RS07585 PF00108 Thiolase, N-terminal domain DK235_RS07590 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DK235_RS07590 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DK235_RS07595 PF00368 Hydroxymethylglutaryl-coenzyme A reductase DK235_RS07615 PF00216 Bacterial DNA-binding protein DK235_RS07625 PF13472 GDSL-like Lipase/Acylhydrolase family DK235_RS07630 PF02645 Uncharacterised protein, DegV family COG1307 DK235_RS07635 PF13476 AAA domain DK235_RS07640 PF01316 Arginine repressor, DNA binding domain DK235_RS07640 PF02863 Arginine repressor, C-terminal domain DK235_RS07645 PF01479 S4 domain DK235_RS07645 PF01728 FtsJ-like methyltransferase DK235_RS07650 PF00348 Polyprenyl synthetase DK235_RS07655 PF02609 Exonuclease VII small subunit DK235_RS07660 PF13742 OB-fold nucleic acid binding domain DK235_RS07660 PF02601 Exonuclease VII, large subunit DK235_RS07665 PF04228 Putative neutral zinc metallopeptidase DK235_RS07670 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DK235_RS07675 PF00672 HAMP domain DK235_RS07675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS07675 PF00512 His Kinase A (phospho-acceptor) domain DK235_RS07680 PF00486 Transcriptional regulatory protein, C terminal DK235_RS07680 PF00072 Response regulator receiver domain DK235_RS07705 PF01368 DHH family DK235_RS07705 PF02833 DHHA2 domain DK235_RS07715 PF04055 Radical SAM superfamily DK235_RS07720 PF01595 Cyclin M transmembrane N-terminal domain DK235_RS07720 PF03471 Transporter associated domain DK235_RS07720 PF00571 CBS domain DK235_RS07725 PF00005 ABC transporter DK235_RS07730 PF06962 Putative rRNA methylase DK235_RS07740 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DK235_RS07740 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DK235_RS07740 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DK235_RS07745 PF02540 NAD synthase DK235_RS07755 PF04055 Radical SAM superfamily DK235_RS07760 PF06265 Protein of unknown function (DUF1027) DK235_RS07765 PF13180 PDZ domain DK235_RS07765 PF05362 Lon protease (S16) C-terminal proteolytic domain DK235_RS07770 PF01467 Cytidylyltransferase-like DK235_RS07785 PF00581 Rhodanese-like domain DK235_RS07790 PF06014 Bacterial protein of unknown function (DUF910) DK235_RS07795 PF00196 Bacterial regulatory proteins, luxR family DK235_RS07795 PF00072 Response regulator receiver domain DK235_RS07800 PF07730 Histidine kinase DK235_RS07800 PF13185 GAF domain DK235_RS07810 PF00005 ABC transporter DK235_RS07815 PF00210 Ferritin-like domain DK235_RS07820 PF05532 CsbD-like DK235_RS07825 PF01451 Low molecular weight phosphotyrosine protein phosphatase DK235_RS07835 PF01757 Acyltransferase family DK235_RS07840 PF01569 PAP2 superfamily DK235_RS07845 PF12822 ECF transporter, substrate-specific component DK235_RS07850 PF00588 SpoU rRNA Methylase family DK235_RS07855 PF01809 Putative membrane protein insertion efficiency factor DK235_RS07860 PF00849 RNA pseudouridylate synthase DK235_RS07860 PF01479 S4 domain DK235_RS07865 PF04079 Segregation and condensation complex subunit ScpB DK235_RS07870 PF02616 Segregation and condensation protein ScpA DK235_RS07875 PF00589 Phage integrase family DK235_RS07890 PF01725 Ham1 family DK235_RS07895 PF01177 Asp/Glu/Hydantoin racemase DK235_RS07900 PF03672 Uncharacterised protein family (UPF0154) DK235_RS07905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DK235_RS07905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DK235_RS07910 PF03051 Peptidase C1-like family DK235_RS07915 PF01027 Inhibitor of apoptosis-promoting Bax1 DK235_RS07925 PF08032 RNA 2'-O ribose methyltransferase substrate binding DK235_RS07925 PF00588 SpoU rRNA Methylase family DK235_RS07930 PF00708 Acylphosphatase DK235_RS07935 PF02096 60Kd inner membrane protein DK235_RS07940 PF03449 Transcription elongation factor, N-terminal DK235_RS07940 PF01272 Transcription elongation factor, GreA/GreB, C-term DK235_RS07945 PF02618 YceG-like family DK235_RS07955 PF08245 Mur ligase middle domain DK235_RS07955 PF01225 Mur ligase family, catalytic domain DK235_RS07955 PF02875 Mur ligase family, glutamate ligase domain DK235_RS07965 PF00271 Helicase conserved C-terminal domain DK235_RS07965 PF00176 SNF2 family N-terminal domain DK235_RS07965 PF04434 SWIM zinc finger DK235_RS07975 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DK235_RS07975 PF01926 50S ribosome-binding GTPase DK235_RS07980 PF00881 Nitroreductase family DK235_RS07985 PF01695 IstB-like ATP binding protein DK235_RS07985 PF07319 Primosomal protein DnaI N-terminus DK235_RS07995 PF03477 ATP cone domain DK235_RS08000 PF01594 AI-2E family transporter DK235_RS08005 PF00486 Transcriptional regulatory protein, C terminal DK235_RS08005 PF00072 Response regulator receiver domain DK235_RS08010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DK235_RS08010 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DK235_RS08020 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS08030 PF00270 DEAD/DEAH box helicase DK235_RS08030 PF00271 Helicase conserved C-terminal domain DK235_RS08040 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DK235_RS08040 PF00953 Glycosyl transferase family 4 DK235_RS08045 PF03717 Penicillin-binding Protein dimerisation domain DK235_RS08045 PF00905 Penicillin binding protein transpeptidase domain DK235_RS08045 PF03793 PASTA domain DK235_RS08055 PF01795 MraW methylase family DK235_RS08100 PF02424 ApbE family DK235_RS08105 PF04205 FMN-binding domain DK235_RS08110 PF00348 Polyprenyl synthetase DK235_RS08115 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS08125 PF02386 Cation transport protein DK235_RS08130 PF02080 TrkA-C domain DK235_RS08130 PF02254 TrkA-N domain DK235_RS08135 PF01554 MatE DK235_RS08145 PF05979 Bacterial protein of unknown function (DUF896) DK235_RS08150 PF02092 Glycyl-tRNA synthetase beta subunit DK235_RS08155 PF02091 Glycyl-tRNA synthetase alpha subunit DK235_RS08170 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS08175 PF09383 NIL domain DK235_RS08175 PF00005 ABC transporter DK235_RS08180 PF07687 Peptidase dimerisation domain DK235_RS08180 PF01546 Peptidase family M20/M25/M40 DK235_RS08185 PF03180 NLPA lipoprotein DK235_RS08190 PF07722 Peptidase C26 DK235_RS08195 PF01717 Cobalamin-independent synthase, Catalytic domain DK235_RS08195 PF08267 Cobalamin-independent synthase, N-terminal domain DK235_RS08200 PF02219 Methylenetetrahydrofolate reductase DK235_RS08205 PF00860 Permease family DK235_RS08215 PF03610 PTS system fructose IIA component DK235_RS08215 PF03830 PTS system sorbose subfamily IIB component DK235_RS08220 PF03609 PTS system sorbose-specific iic component DK235_RS08225 PF03613 PTS system mannose/fructose/sorbose family IID component DK235_RS08235 PF02403 Seryl-tRNA synthetase N-terminal domain DK235_RS08235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK235_RS08240 PF02384 N-6 DNA Methylase DK235_RS08240 PF12161 HsdM N-terminal domain DK235_RS08250 PF12008 Type I restriction and modification enzyme - subunit R C terminal DK235_RS08250 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DK235_RS08250 PF18766 SWI2/SNF2 ATPase DK235_RS08285 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DK235_RS08290 PF01039 Carboxyl transferase domain DK235_RS08295 PF00289 Biotin carboxylase, N-terminal domain DK235_RS08295 PF02785 Biotin carboxylase C-terminal domain DK235_RS08295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DK235_RS08300 PF07977 FabA-like domain DK235_RS08305 PF00364 Biotin-requiring enzyme DK235_RS08310 PF02801 Beta-ketoacyl synthase, C-terminal domain DK235_RS08310 PF00109 Beta-ketoacyl synthase, N-terminal domain DK235_RS08320 PF00698 Acyl transferase domain DK235_RS08325 PF03060 Nitronate monooxygenase DK235_RS08330 PF00550 Phosphopantetheine attachment site DK235_RS08335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DK235_RS08335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DK235_RS08345 PF00378 Enoyl-CoA hydratase/isomerase DK235_RS08350 PF13419 Haloacid dehalogenase-like hydrolase DK235_RS08355 PF00696 Amino acid kinase family DK235_RS08355 PF13840 ACT domain DK235_RS08360 PF01168 Alanine racemase, N-terminal domain DK235_RS08360 PF00842 Alanine racemase, C-terminal domain DK235_RS08365 PF01648 4'-phosphopantetheinyl transferase superfamily DK235_RS08370 PF07517 SecA DEAD-like domain DK235_RS08370 PF02810 SEC-C motif DK235_RS08370 PF01043 SecA preprotein cross-linking domain DK235_RS08370 PF07516 SecA Wing and Scaffold domain DK235_RS08380 PF00480 ROK family DK235_RS08385 PF00367 phosphotransferase system, EIIB DK235_RS08385 PF02378 Phosphotransferase system, EIIC DK235_RS08385 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DK235_RS08390 PF08244 Glycosyl hydrolases family 32 C terminal DK235_RS08390 PF00251 Glycosyl hydrolases family 32 N-terminal domain DK235_RS08395 PF00356 Bacterial regulatory proteins, lacI family DK235_RS08400 PF01029 NusB family DK235_RS08405 PF03780 Asp23 family, cell envelope-related function DK235_RS08410 PF01132 Elongation factor P (EF-P) OB domain DK235_RS08410 PF08207 Elongation factor P (EF-P) KOW-like domain DK235_RS08410 PF09285 Elongation factor P, C-terminal DK235_RS08415 PF01321 Creatinase/Prolidase N-terminal domain DK235_RS08415 PF00557 Metallopeptidase family M24 DK235_RS08420 PF00005 ABC transporter DK235_RS08420 PF17760 UvrA interaction domain DK235_RS08420 PF17755 UvrA DNA-binding domain DK235_RS08440 PF01084 Ribosomal protein S18 DK235_RS08445 PF00436 Single-strand binding protein family DK235_RS08450 PF01250 Ribosomal protein S6 DK235_RS08455 PF13936 Helix-turn-helix domain DK235_RS08455 PF00665 Integrase core domain DK235_RS08460 PF03099 Biotin/lipoate A/B protein ligase family DK235_RS08460 PF10437 Bacterial lipoate protein ligase C-terminus DK235_RS08470 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS08470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DK235_RS08475 PF02817 e3 binding domain DK235_RS08475 PF00364 Biotin-requiring enzyme DK235_RS08475 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DK235_RS08480 PF00364 Biotin-requiring enzyme DK235_RS08480 PF02779 Transketolase, pyrimidine binding domain DK235_RS08480 PF02780 Transketolase, C-terminal domain DK235_RS08485 PF00676 Dehydrogenase E1 component DK235_RS08490 PF03458 UPF0126 domain DK235_RS08495 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 DK235_RS08505 PF02033 Ribosome-binding factor A DK235_RS08510 PF04760 Translation initiation factor IF-2, N-terminal region DK235_RS08510 PF11987 Translation-initiation factor 2 DK235_RS08510 PF00009 Elongation factor Tu GTP binding domain DK235_RS08515 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DK235_RS08520 PF04296 Protein of unknown function (DUF448) DK235_RS08525 PF08529 NusA N-terminal domain DK235_RS08525 PF13184 NusA-like KH domain DK235_RS08525 PF00575 S1 RNA binding domain DK235_RS08530 PF17384 RimP C-terminal SH3 domain DK235_RS08530 PF02576 RimP N-terminal domain DK235_RS08535 PF02390 Putative methyltransferase DK235_RS08545 PF05975 Bacterial ABC transporter protein EcsB DK235_RS08550 PF00005 ABC transporter DK235_RS08555 PF01230 HIT domain DK235_RS08565 PF03816 Cell envelope-related transcriptional attenuator domain DK235_RS08575 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DK235_RS08580 PF02734 DAK2 domain DK235_RS08580 PF13684 Dihydroxyacetone kinase family DK235_RS08585 PF03780 Asp23 family, cell envelope-related function DK235_RS08595 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS08600 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS08605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK235_RS08605 PF00005 ABC transporter DK235_RS08610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DK235_RS08610 PF00005 ABC transporter DK235_RS08615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DK235_RS08620 PF00768 D-alanyl-D-alanine carboxypeptidase DK235_RS08620 PF07943 Penicillin-binding protein 5, C-terminal domain DK235_RS08625 PF01458 Uncharacterized protein family (UPF0051) DK235_RS08630 PF01592 NifU-like N terminal domain DK235_RS08635 PF00266 Aminotransferase class-V DK235_RS08640 PF01458 Uncharacterized protein family (UPF0051) DK235_RS08645 PF00005 ABC transporter DK235_RS08650 PF00953 Glycosyl transferase family 4 DK235_RS08655 PF05389 Negative regulator of genetic competence (MecA) DK235_RS08660 PF02673 Bacitracin resistance protein BacA DK235_RS08665 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS08670 PF00005 ABC transporter DK235_RS08685 PF00291 Pyridoxal-phosphate dependent enzyme DK235_RS08685 PF00585 C-terminal regulatory domain of Threonine dehydratase DK235_RS08690 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DK235_RS08690 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DK235_RS08695 PF10369 Small subunit of acetolactate synthase DK235_RS08695 PF01842 ACT domain DK235_RS08700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DK235_RS08700 PF00205 Thiamine pyrophosphate enzyme, central domain DK235_RS08700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DK235_RS08720 PF00920 Dehydratase family DK235_RS08730 PF01883 Iron-sulfur cluster assembly protein DK235_RS08740 PF00380 Ribosomal protein S9/S16 DK235_RS08745 PF00572 Ribosomal protein L13 DK235_RS08750 PF02645 Uncharacterised protein, DegV family COG1307 DK235_RS08760 PF00588 SpoU rRNA Methylase family DK235_RS08760 PF08032 RNA 2'-O ribose methyltransferase substrate binding DK235_RS08785 PF00005 ABC transporter DK235_RS08785 PF17912 MalK OB fold domain DK235_RS08785 PF03459 TOBE domain DK235_RS08790 PF13556 PucR C-terminal helix-turn-helix domain DK235_RS08795 PF00072 Response regulator receiver domain DK235_RS08795 PF12833 Helix-turn-helix domain DK235_RS08800 PF00672 HAMP domain DK235_RS08800 PF06580 Histidine kinase DK235_RS08800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DK235_RS08800 PF02743 Cache domain DK235_RS08820 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS08825 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS08835 PF00480 ROK family DK235_RS08840 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 DK235_RS08840 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain DK235_RS08840 PF07748 Glycosyl hydrolases family 38 C-terminal domain DK235_RS08840 PF09261 Alpha mannosidase middle domain DK235_RS08840 PF01074 Glycosyl hydrolases family 38 N-terminal domain DK235_RS08860 PF00636 Ribonuclease III domain DK235_RS08865 PF09190 DALR domain DK235_RS08865 PF01406 tRNA synthetases class I (C) catalytic domain DK235_RS08875 PF00132 Bacterial transferase hexapeptide (six repeats) DK235_RS08880 PF00013 KH domain DK235_RS08880 PF00575 S1 RNA binding domain DK235_RS08880 PF03725 3' exoribonuclease family, domain 2 DK235_RS08880 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DK235_RS08880 PF01138 3' exoribonuclease family, domain 1 DK235_RS08900 PF02378 Phosphotransferase system, EIIC DK235_RS08900 PF00367 phosphotransferase system, EIIB DK235_RS08905 PF13580 SIS domain DK235_RS08910 PF01380 SIS domain DK235_RS08910 PF01418 Helix-turn-helix domain, rpiR family DK235_RS08915 PF00312 Ribosomal protein S15 DK235_RS08920 PF00860 Permease family DK235_RS08935 PF01479 S4 domain DK235_RS08935 PF00849 RNA pseudouridylate synthase DK235_RS08955 PF01327 Polypeptide deformylase DK235_RS08965 PF00694 Aconitase C-terminal domain DK235_RS08970 PF00330 Aconitase family (aconitate hydratase) DK235_RS08975 PF00180 Isocitrate/isopropylmalate dehydrogenase DK235_RS08980 PF00682 HMGL-like DK235_RS08980 PF08502 LeuA allosteric (dimerisation) domain DK235_RS08990 PF02073 Thermophilic metalloprotease (M29) DK235_RS09005 PF14480 DNA polymerase III polC-type N-terminus I DK235_RS09005 PF11490 DNA polymerase III polC-type N-terminus II DK235_RS09005 PF07733 Bacterial DNA polymerase III alpha NTPase domain DK235_RS09005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DK235_RS09005 PF02811 PHP domain DK235_RS09005 PF00929 Exonuclease DK235_RS09010 PF02733 Dak1 domain DK235_RS09020 PF02733 Dak1 domain DK235_RS09025 PF02734 DAK2 domain DK235_RS09030 PF03610 PTS system fructose IIA component DK235_RS09035 PF00230 Major intrinsic protein DK235_RS09040 PF03129 Anticodon binding domain DK235_RS09040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DK235_RS09040 PF04073 Aminoacyl-tRNA editing domain DK235_RS09045 PF02163 Peptidase family M50 DK235_RS09045 PF13180 PDZ domain DK235_RS09055 PF01255 Putative undecaprenyl diphosphate synthase DK235_RS09060 PF02699 Preprotein translocase subunit DK235_RS09065 PF00709 Adenylosuccinate synthetase DK235_RS09070 PF04262 Glutamate-cysteine ligase DK235_RS09070 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DK235_RS09070 PF18419 ATP-grasp-like domain DK235_RS09080 PF01430 Hsp33 protein DK235_RS09085 PF01207 Dihydrouridine synthase (Dus) DK235_RS09095 PF04973 Nicotinamide mononucleotide transporter DK235_RS09100 PF01467 Cytidylyltransferase-like DK235_RS09105 PF00004 ATPase family associated with various cellular activities (AAA) DK235_RS09105 PF07724 AAA domain (Cdc48 subfamily) DK235_RS09105 PF02861 Clp amino terminal domain, pathogenicity island component DK235_RS09105 PF10431 C-terminal, D2-small domain, of ClpB protein DK235_RS09105 PF17871 AAA lid domain DK235_RS09110 PF17727 CtsR C-terminal dimerization domain DK235_RS09110 PF05848 CtsR N-terminal HTH domain DK235_RS09125 PF00889 Elongation factor TS DK235_RS09130 PF00318 Ribosomal protein S2 DK235_RS09145 PF06280 Fn3-like domain DK235_RS09145 PF02225 PA domain DK235_RS09145 PF00082 Subtilase family DK235_RS09145 PF00746 LPXTG cell wall anchor motif DK235_RS09150 PF02357 Transcription termination factor nusG DK235_RS09150 PF00467 KOW motif DK235_RS09160 PF00471 Ribosomal protein L33 DK235_RS09165 PF00905 Penicillin binding protein transpeptidase domain DK235_RS09165 PF00912 Transglycosylase DK235_RS09170 PF07992 Pyridine nucleotide-disulphide oxidoreductase DK235_RS09175 PF00849 RNA pseudouridylate synthase DK235_RS09175 PF01479 S4 domain DK235_RS09180 PF09182 Bacterial purine repressor, N-terminal DK235_RS09180 PF00156 Phosphoribosyl transferase domain DK235_RS09190 PF01336 OB-fold nucleic acid binding domain DK235_RS09190 PF01966 HD domain DK235_RS09195 PF02646 RmuC family DK235_RS09200 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain DK235_RS09200 PF04263 Thiamin pyrophosphokinase, catalytic domain DK235_RS09205 PF00834 Ribulose-phosphate 3 epimerase family DK235_RS09210 PF16745 RsgA N-terminal domain DK235_RS09210 PF03193 RsgA GTPase DK235_RS09220 PF03412 Peptidase C39 family DK235_RS09220 PF00005 ABC transporter DK235_RS09220 PF00664 ABC transporter transmembrane region DK235_RS09245 PF00398 Ribosomal RNA adenine dimethylase DK235_RS09255 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DK235_RS09265 PF09297 NADH pyrophosphatase zinc ribbon domain DK235_RS09265 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DK235_RS09265 PF00293 NUDIX domain DK235_RS09285 PF13331 Domain of unknown function (DUF4093) DK235_RS09290 PF01026 TatD related DNase DK235_RS09295 PF00468 Ribosomal protein L34 DK235_RS09300 PF01424 R3H domain DK235_RS09300 PF14804 Jag N-terminus DK235_RS09305 PF02096 60Kd inner membrane protein DK235_RS09310 PF00825 Ribonuclease P DK235_RS09315 PF00206 Lyase DK235_RS09315 PF14698 Argininosuccinate lyase C-terminal DK235_RS09320 PF00764 Arginosuccinate synthase DK235_RS09330 PF02829 3H domain DK235_RS09330 PF08279 HTH domain DK235_RS09345 PF02574 Homocysteine S-methyltransferase DK235_RS09350 PF00324 Amino acid permease DK235_RS09355 PF00749 tRNA synthetases class I (E and Q), catalytic domain DK235_RS09375 PF01987 Mitochondrial biogenesis AIM24 DK235_RS09380 PF00484 Carbonic anhydrase DK235_RS09385 PF18073 Rubredoxin metal binding domain DK235_RS09395 PF00692 dUTPase DK235_RS09400 PF00005 ABC transporter DK235_RS09400 PF00664 ABC transporter transmembrane region DK235_RS09405 PF00664 ABC transporter transmembrane region DK235_RS09405 PF00005 ABC transporter DK235_RS09415 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DK235_RS09415 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DK235_RS09420 PF00483 Nucleotidyl transferase DK235_RS09425 PF01694 Rhomboid family DK235_RS09430 PF01812 5-formyltetrahydrofolate cyclo-ligase family DK235_RS09435 PF01546 Peptidase family M20/M25/M40 DK235_RS09435 PF07687 Peptidase dimerisation domain DK235_RS09440 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal DK235_RS09440 PF00132 Bacterial transferase hexapeptide (six repeats) DK235_RS09440 PF14602 Hexapeptide repeat of succinyl-transferase DK235_RS09455 PF00149 Calcineurin-like phosphoesterase DK235_RS09460 PF00342 Phosphoglucose isomerase DK235_RS09475 PF14437 MafB19-like deaminase DK235_RS09480 PF02779 Transketolase, pyrimidine binding domain DK235_RS09480 PF02780 Transketolase, C-terminal domain DK235_RS09480 PF00456 Transketolase, thiamine diphosphate binding domain DK235_RS09500 PF00596 Class II Aldolase and Adducin N-terminal domain DK235_RS09505 PF01261 Xylose isomerase-like TIM barrel DK235_RS09510 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DK235_RS09515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK235_RS09520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK235_RS09525 PF03611 PTS system sugar-specific permease component DK235_RS09530 PF17999 Pullulanase N1-terminal domain DK235_RS09530 PF00128 Alpha amylase, catalytic domain DK235_RS09530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK235_RS09535 PF00356 Bacterial regulatory proteins, lacI family DK235_RS09540 PF00005 ABC transporter DK235_RS09545 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS09550 PF00497 Bacterial extracellular solute-binding proteins, family 3 DK235_RS09555 PF05257 CHAP domain DK235_RS09555 PF01476 LysM domain DK235_RS09560 PF02378 Phosphotransferase system, EIIC DK235_RS09570 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DK235_RS09575 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DK235_RS09580 PF00874 PRD domain DK235_RS09580 PF08279 HTH domain DK235_RS09580 PF05043 Mga helix-turn-helix domain DK235_RS09580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DK235_RS09590 PF00232 Glycosyl hydrolase family 1 DK235_RS09595 PF02056 Family 4 glycosyl hydrolase DK235_RS09595 PF11975 Family 4 glycosyl hydrolase C-terminal domain DK235_RS09600 PF08264 Anticodon-binding domain of tRNA DK235_RS09600 PF13603 Leucyl-tRNA synthetase, Domain 2 DK235_RS09600 PF00133 tRNA synthetases class I (I, L, M and V) DK235_RS09600 PF09334 tRNA synthetases class I (M) DK235_RS09605 PF01431 Peptidase family M13 DK235_RS09605 PF05649 Peptidase family M13 DK235_RS09610 PF00950 ABC 3 transport family DK235_RS09615 PF00950 ABC 3 transport family DK235_RS09620 PF00005 ABC transporter DK235_RS09630 PF01297 Zinc-uptake complex component A periplasmic DK235_RS09665 PF02580 D-Tyr-tRNA(Tyr) deacylase DK235_RS09670 PF13291 ACT domain DK235_RS09670 PF04607 Region found in RelA / SpoT proteins DK235_RS09670 PF02824 TGS domain DK235_RS09675 PF00149 Calcineurin-like phosphoesterase DK235_RS09675 PF02872 5'-nucleotidase, C-terminal domain DK235_RS09720 PF04452 RNA methyltransferase DK235_RS09745 PF16193 AAA C-terminal domain DK235_RS09745 PF12002 MgsA AAA+ ATPase C terminal DK235_RS09745 PF05496 Holliday junction DNA helicase RuvB P-loop domain DK235_RS09770 PF00149 Calcineurin-like phosphoesterase DK235_RS09770 PF02872 5'-nucleotidase, C-terminal domain DK235_RS09775 PF13597 Anaerobic ribonucleoside-triphosphate reductase DK235_RS09775 PF03477 ATP cone domain DK235_RS09795 PF04397 LytTr DNA-binding domain DK235_RS09800 PF05188 MutS domain II DK235_RS09800 PF05192 MutS domain III DK235_RS09800 PF05190 MutS family domain IV DK235_RS09800 PF00488 MutS domain V DK235_RS09800 PF01624 MutS domain I DK235_RS09805 PF01316 Arginine repressor, DNA binding domain DK235_RS09805 PF02863 Arginine repressor, C-terminal domain DK235_RS09810 PF00750 tRNA synthetases class I (R) DK235_RS09810 PF05746 DALR anticodon binding domain DK235_RS09810 PF03485 Arginyl tRNA synthetase N terminal domain DK235_RS09830 PF02446 4-alpha-glucanotransferase DK235_RS09835 PF13416 Bacterial extracellular solute-binding protein DK235_RS09840 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS09845 PF00528 Binding-protein-dependent transport system inner membrane component DK235_RS09855 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DK235_RS09855 PF00356 Bacterial regulatory proteins, lacI family DK235_RS09860 PF17999 Pullulanase N1-terminal domain DK235_RS09860 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DK235_RS09860 PF00128 Alpha amylase, catalytic domain DK235_RS09865 PF07972 NrdI Flavodoxin like DK235_RS09870 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK235_RS09870 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK235_RS09875 PF01336 OB-fold nucleic acid binding domain DK235_RS09875 PF02938 GAD domain DK235_RS09875 PF00152 tRNA synthetases class II (D, K and N) DK235_RS09880 PF13673 Acetyltransferase (GNAT) domain DK235_RS09885 PF00248 Aldo/keto reductase family DK235_RS09890 PF00535 Glycosyl transferase family 2 DK235_RS09895 PF00933 Glycosyl hydrolase family 3 N terminal domain DK235_RS09895 PF14310 Fibronectin type III-like domain DK235_RS09895 PF01915 Glycosyl hydrolase family 3 C-terminal domain DK235_RS09910 PF01339 CheB methylesterase DK235_RS09910 PF00072 Response regulator receiver domain DK235_RS09925 PF14537 Cytochrome c3 DK235_RS09925 PF00890 FAD binding domain DK235_RS09935 PF00163 Ribosomal protein S4/S9 N-terminal domain DK235_RS09935 PF01479 S4 domain DK235_RS09945 PF00772 DnaB-like helicase N terminal domain DK235_RS09945 PF03796 DnaB-like helicase C terminal domain DK235_RS09950 PF01281 Ribosomal protein L9, N-terminal domain DK235_RS09950 PF03948 Ribosomal protein L9, C-terminal domain DK235_RS09955 PF01368 DHH family DK235_RS09955 PF02272 DHHA1 domain DK235_RS09960 PF01134 Glucose inhibited division protein A DK235_RS09960 PF13932 GidA associated domain DK235_RS09970 PF00293 NUDIX domain DK235_RS09975 PF00293 NUDIX domain DK235_RS09980 PF01638 HxlR-like helix-turn-helix DK235_RS09995 PF03315 Serine dehydratase beta chain DK235_RS09995 PF01842 ACT domain DK235_RS10000 PF03313 Serine dehydratase alpha chain DK235_RS10010 PF02361 Cobalt transport protein DK235_RS10015 PF00005 ABC transporter DK235_RS10020 PF00005 ABC transporter DK235_RS10025 PF01066 CDP-alcohol phosphatidyltransferase DK235_RS10030 PF13464 Domain of unknown function (DUF4115) DK235_RS10035 PF05193 Peptidase M16 inactive domain DK235_RS10035 PF00675 Insulinase (Peptidase family M16) DK235_RS10040 PF05193 Peptidase M16 inactive domain DK235_RS10050 PF02463 RecF/RecN/SMC N terminal domain DK235_RS10055 PF00478 IMP dehydrogenase / GMP reductase domain DK235_RS10055 PF00571 CBS domain DK235_RS10060 PF00579 tRNA synthetases class I (W and Y) DK235_RS10065 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DK235_RS10065 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DK235_RS10070 PF12848 ABC transporter DK235_RS10070 PF00005 ABC transporter DK235_RS10100 PF02590 Predicted SPOUT methyltransferase DK235_RS10105 PF13180 PDZ domain DK235_RS10110 PF17762 HTH domain found in ParB protein DK235_RS10110 PF02195 ParB-like nuclease domain