locus-tag class description YYK_RS00005 PF00308 Bacterial dnaA protein YYK_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix YYK_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain YYK_RS00010 PF02767 DNA polymerase III beta subunit, central domain YYK_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain YYK_RS00025 PF01381 Helix-turn-helix YYK_RS00030 PF06071 Protein of unknown function (DUF933) YYK_RS00030 PF01926 50S ribosome-binding GTPase YYK_RS00035 PF01195 Peptidyl-tRNA hydrolase YYK_RS00040 PF17757 UvrB interaction domain YYK_RS00040 PF03461 TRCF domain YYK_RS00040 PF00271 Helicase conserved C-terminal domain YYK_RS00040 PF00270 DEAD/DEAH box helicase YYK_RS00040 PF02559 CarD-like/TRCF domain YYK_RS00045 PF01479 S4 domain YYK_RS00065 PF01171 PP-loop family YYK_RS00070 PF00156 Phosphoribosyl transferase domain YYK_RS00075 PF17862 AAA+ lid domain YYK_RS00075 PF01434 Peptidase family M41 YYK_RS00075 PF06480 FtsH Extracellular YYK_RS00075 PF00004 ATPase family associated with various cellular activities (AAA) YYK_RS00185 PF04085 rod shape-determining protein MreC YYK_RS00200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YYK_RS00200 PF14572 Phosphoribosyl synthetase-associated domain YYK_RS00205 PF00155 Aminotransferase class I and II YYK_RS00210 PF02565 Recombination protein O C terminal YYK_RS00210 PF11967 Recombination protein O N terminal YYK_RS00215 PF02504 Fatty acid synthesis protein YYK_RS00220 PF00550 Phosphopantetheine attachment site YYK_RS00225 PF01259 SAICAR synthetase YYK_RS00230 PF00586 AIR synthase related protein, N-terminal domain YYK_RS00230 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YYK_RS00230 PF02769 AIR synthase related protein, C-terminal domain YYK_RS00235 PF00156 Phosphoribosyl transferase domain YYK_RS00235 PF13537 Glutamine amidotransferase domain YYK_RS00240 PF02769 AIR synthase related protein, C-terminal domain YYK_RS00240 PF00586 AIR synthase related protein, N-terminal domain YYK_RS00245 PF00551 Formyl transferase YYK_RS00250 PF02142 MGS-like domain YYK_RS00250 PF01808 AICARFT/IMPCHase bienzyme YYK_RS00255 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YYK_RS00255 PF02843 Phosphoribosylglycinamide synthetase, C domain YYK_RS00255 PF02844 Phosphoribosylglycinamide synthetase, N domain YYK_RS00260 PF00731 AIR carboxylase YYK_RS00265 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YYK_RS00265 PF02222 ATP-grasp domain YYK_RS00280 PF10397 Adenylosuccinate lyase C-terminus YYK_RS00280 PF00206 Lyase YYK_RS00300 PF00005 ABC transporter YYK_RS00310 PF00664 ABC transporter transmembrane region YYK_RS00310 PF00005 ABC transporter YYK_RS00315 PF17864 RuvB AAA lid domain YYK_RS00315 PF05496 Holliday junction DNA helicase RuvB P-loop domain YYK_RS00315 PF05491 RuvB C-terminal winged helix domain YYK_RS00325 PF13419 Haloacid dehalogenase-like hydrolase YYK_RS00350 PF02875 Mur ligase family, glutamate ligase domain YYK_RS00350 PF08245 Mur ligase middle domain YYK_RS00365 PF08676 MutL C terminal dimerisation domain YYK_RS00365 PF01119 DNA mismatch repair protein, C-terminal domain YYK_RS00370 PF01330 RuvA N terminal domain YYK_RS00370 PF07499 RuvA, C-terminal domain YYK_RS00380 PF00117 Glutamine amidotransferase class-I YYK_RS00380 PF13302 Acetyltransferase (GNAT) domain YYK_RS00380 PF03352 Methyladenine glycosylase YYK_RS00380 PF13673 Acetyltransferase (GNAT) domain YYK_RS00380 PF00958 GMP synthase C terminal domain YYK_RS00385 PF02464 Competence-damaged protein YYK_RS00385 PF00994 Probable molybdopterin binding domain YYK_RS00385 PF18146 Damage-inducible protein CinA KH domain YYK_RS00390 PF00154 recA bacterial DNA recombination protein YYK_RS00395 PF03960 ArsC family YYK_RS00400 PF06135 IreB regulatory phosphoprotein YYK_RS00405 PF03652 Holliday junction resolvase YYK_RS00410 PF06949 Protein of unknown function (DUF1292) YYK_RS00425 PF00338 Ribosomal protein S10p/S20e YYK_RS00430 PF00297 Ribosomal protein L3 YYK_RS00435 PF00573 Ribosomal protein L4/L1 family YYK_RS00440 PF00276 Ribosomal protein L23 YYK_RS00445 PF03947 Ribosomal Proteins L2, C-terminal domain YYK_RS00445 PF00181 Ribosomal Proteins L2, RNA binding domain YYK_RS00450 PF00203 Ribosomal protein S19 YYK_RS00455 PF00237 Ribosomal protein L22p/L17e YYK_RS00460 PF07650 KH domain YYK_RS00460 PF00189 Ribosomal protein S3, C-terminal domain YYK_RS00465 PF00252 Ribosomal protein L16p/L10e YYK_RS00470 PF00831 Ribosomal L29 protein YYK_RS00475 PF00366 Ribosomal protein S17 YYK_RS00480 PF00238 Ribosomal protein L14p/L23e YYK_RS00485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YYK_RS00485 PF00467 KOW motif YYK_RS00490 PF00281 Ribosomal protein L5 YYK_RS00490 PF00673 ribosomal L5P family C-terminus YYK_RS00495 PF00253 Ribosomal protein S14p/S29e YYK_RS00505 PF00410 Ribosomal protein S8 YYK_RS00515 PF00347 Ribosomal protein L6 YYK_RS00520 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YYK_RS00525 PF00333 Ribosomal protein S5, N-terminal domain YYK_RS00525 PF03719 Ribosomal protein S5, C-terminal domain YYK_RS00530 PF00327 Ribosomal protein L30p/L7e YYK_RS00535 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YYK_RS00540 PF00344 SecY translocase YYK_RS00550 PF01176 Translation initiation factor 1A / IF-1 YYK_RS00555 PF00444 Ribosomal protein L36 YYK_RS00560 PF00416 Ribosomal protein S13/S18 YYK_RS00565 PF00411 Ribosomal protein S11 YYK_RS00570 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YYK_RS00570 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YYK_RS00570 PF01000 RNA polymerase Rpb3/RpoA insert domain YYK_RS00575 PF01196 Ribosomal protein L17 YYK_RS00670 PF01047 MarR family YYK_RS00675 PF00005 ABC transporter YYK_RS00680 PF00950 ABC 3 transport family YYK_RS00685 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment YYK_RS00685 PF01297 Zinc-uptake complex component A periplasmic YYK_RS00690 PF03965 Penicillinase repressor YYK_RS00710 PF00579 tRNA synthetases class I (W and Y) YYK_RS00710 PF01479 S4 domain YYK_RS00715 PF00905 Penicillin binding protein transpeptidase domain YYK_RS00715 PF00912 Transglycosylase YYK_RS00720 PF00562 RNA polymerase Rpb2, domain 6 YYK_RS00720 PF04560 RNA polymerase Rpb2, domain 7 YYK_RS00720 PF10385 RNA polymerase beta subunit external 1 domain YYK_RS00720 PF04565 RNA polymerase Rpb2, domain 3 YYK_RS00720 PF04561 RNA polymerase Rpb2, domain 2 YYK_RS00720 PF04563 RNA polymerase beta subunit YYK_RS00725 PF05000 RNA polymerase Rpb1, domain 4 YYK_RS00725 PF04983 RNA polymerase Rpb1, domain 3 YYK_RS00725 PF00623 RNA polymerase Rpb1, domain 2 YYK_RS00725 PF04997 RNA polymerase Rpb1, domain 1 YYK_RS00725 PF04998 RNA polymerase Rpb1, domain 5 YYK_RS00740 PF00437 Type II/IV secretion system protein YYK_RS00745 PF00482 Type II secretion system (T2SS), protein F YYK_RS00750 PF07963 Prokaryotic N-terminal methylation motif YYK_RS00780 PF00871 Acetokinase family YYK_RS00785 PF07155 ECF-type riboflavin transporter, S component YYK_RS00790 PF02875 Mur ligase family, glutamate ligase domain YYK_RS00790 PF08245 Mur ligase middle domain YYK_RS00795 PF05343 M42 glutamyl aminopeptidase YYK_RS00805 PF00085 Thioredoxin YYK_RS00815 PF14794 Domain of unknown function (DUF4479) YYK_RS00815 PF01588 Putative tRNA binding domain YYK_RS00825 PF00436 Single-strand binding protein family YYK_RS00835 PF00166 Chaperonin 10 Kd subunit YYK_RS00840 PF00118 TCP-1/cpn60 chaperonin family YYK_RS00845 PF00164 Ribosomal protein S12/S23 YYK_RS00850 PF00177 Ribosomal protein S7p/S5e YYK_RS00855 PF03144 Elongation factor Tu domain 2 YYK_RS00855 PF00009 Elongation factor Tu GTP binding domain YYK_RS00855 PF03764 Elongation factor G, domain IV YYK_RS00855 PF00679 Elongation factor G C-terminus YYK_RS00855 PF14492 Elongation Factor G, domain II YYK_RS00860 PF05649 Peptidase family M13 YYK_RS00860 PF01431 Peptidase family M13 YYK_RS00865 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YYK_RS00865 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YYK_RS00870 PF00162 Phosphoglycerate kinase YYK_RS00875 PF06081 Aromatic acid exporter family member 1 YYK_RS00880 PF13411 MerR HTH family regulatory protein YYK_RS00885 PF00120 Glutamine synthetase, catalytic domain YYK_RS00885 PF03951 Glutamine synthetase, beta-Grasp domain YYK_RS00890 PF17770 Ribonuclease J C-terminal domain YYK_RS00890 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain YYK_RS00890 PF00753 Metallo-beta-lactamase superfamily YYK_RS00895 PF07288 Protein of unknown function (DUF1447) YYK_RS00900 PF00814 Glycoprotease family YYK_RS00910 PF00814 Glycoprotease family YYK_RS00915 PF02311 AraC-like ligand binding domain YYK_RS00915 PF12833 Helix-turn-helix domain YYK_RS00920 PF01547 Bacterial extracellular solute-binding protein YYK_RS00925 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS00930 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS00935 PF16875 Glycosyl hydrolase family 36 N-terminal domain YYK_RS00935 PF16874 Glycosyl hydrolase family 36 C-terminal domain YYK_RS00950 PF03601 Conserved hypothetical protein 698 YYK_RS00975 PF13732 Domain of unknown function (DUF4162) YYK_RS00975 PF00005 ABC transporter YYK_RS00985 PF00232 Glycosyl hydrolase family 1 YYK_RS00990 PF04394 Protein of unknown function, DUF536 YYK_RS00990 PF08279 HTH domain YYK_RS00995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YYK_RS01000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YYK_RS01005 PF03611 PTS system sugar-specific permease component YYK_RS01010 PF00456 Transketolase, thiamine diphosphate binding domain YYK_RS01015 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YYK_RS01015 PF02780 Transketolase, C-terminal domain YYK_RS01015 PF02779 Transketolase, pyrimidine binding domain YYK_RS01020 PF03009 Glycerophosphoryl diester phosphodiesterase family YYK_RS01025 PF02575 YbaB/EbfC DNA-binding family YYK_RS01030 PF01380 SIS domain YYK_RS01040 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal YYK_RS01040 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain YYK_RS01040 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YYK_RS01050 PF00144 Beta-lactamase YYK_RS01055 PF01228 Glycine radical YYK_RS01055 PF02901 Pyruvate formate lyase-like YYK_RS01060 PF11798 IMS family HHH motif YYK_RS01060 PF11799 impB/mucB/samB family C-terminal domain YYK_RS01060 PF00817 impB/mucB/samB family YYK_RS01070 PF13460 NAD(P)H-binding YYK_RS01075 PF00294 pfkB family carbohydrate kinase YYK_RS01090 PF00480 ROK family YYK_RS01095 PF02378 Phosphotransferase system, EIIC YYK_RS01115 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS01120 PF00005 ABC transporter YYK_RS01130 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YYK_RS01135 PF00403 Heavy-metal-associated domain YYK_RS01140 PF00403 Heavy-metal-associated domain YYK_RS01145 PF00403 Heavy-metal-associated domain YYK_RS01150 PF13538 UvrD-like helicase C-terminal domain YYK_RS01150 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain YYK_RS01150 PF14490 Helix-hairpin-helix containing domain YYK_RS01155 PF10502 Signal peptidase, peptidase S26 YYK_RS01160 PF11858 Domain of unknown function (DUF3378) YYK_RS01160 PF01351 Ribonuclease HII YYK_RS01165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain YYK_RS01165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold YYK_RS01175 PF00128 Alpha amylase, catalytic domain YYK_RS01175 PF16657 Maltogenic Amylase, C-terminal domain YYK_RS01190 PF02378 Phosphotransferase system, EIIC YYK_RS01190 PF00367 phosphotransferase system, EIIB YYK_RS01195 PF07702 UTRA domain YYK_RS01195 PF00392 Bacterial regulatory proteins, gntR family YYK_RS01210 PF00488 MutS domain V YYK_RS01210 PF01713 Smr domain YYK_RS01220 PF00085 Thioredoxin YYK_RS01225 PF00501 AMP-binding enzyme YYK_RS01225 PF13193 AMP-binding enzyme C-terminal domain YYK_RS01230 PF01625 Peptide methionine sulfoxide reductase YYK_RS01230 PF01641 SelR domain YYK_RS01250 PF00005 ABC transporter YYK_RS01255 PF01235 Sodium:alanine symporter family YYK_RS01260 PF00924 Mechanosensitive ion channel YYK_RS01275 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YYK_RS01275 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YYK_RS01280 PF01180 Dihydroorotate dehydrogenase YYK_RS01285 PF09587 Bacterial capsule synthesis protein PGA_cap YYK_RS01305 PF00005 ABC transporter YYK_RS01310 PF00440 Bacterial regulatory proteins, tetR family YYK_RS01340 PF04172 LrgB-like family YYK_RS01345 PF01226 Formate/nitrite transporter YYK_RS01350 PF00230 Major intrinsic protein YYK_RS01355 PF05872 Bacterial protein of unknown function (DUF853) YYK_RS01360 PF00293 NUDIX domain YYK_RS01385 PF00471 Ribosomal protein L33 YYK_RS01390 PF01783 Ribosomal L32p protein family YYK_RS01395 PF13393 Histidyl-tRNA synthetase YYK_RS01395 PF03129 Anticodon binding domain YYK_RS01400 PF00107 Zinc-binding dehydrogenase YYK_RS01400 PF08240 Alcohol dehydrogenase GroES-like domain YYK_RS01405 PF00465 Iron-containing alcohol dehydrogenase YYK_RS01405 PF00171 Aldehyde dehydrogenase family YYK_RS01410 PF14821 Threonine synthase N terminus YYK_RS01410 PF00291 Pyridoxal-phosphate dependent enzyme YYK_RS01415 PF00664 ABC transporter transmembrane region YYK_RS01415 PF00005 ABC transporter YYK_RS01420 PF00005 ABC transporter YYK_RS01420 PF00664 ABC transporter transmembrane region YYK_RS01435 PF00005 ABC transporter YYK_RS01440 PF01554 MatE YYK_RS01445 PF00288 GHMP kinases N terminal domain YYK_RS01445 PF08544 GHMP kinases C terminal YYK_RS01445 PF10509 Galactokinase galactose-binding signature YYK_RS01455 PF08544 GHMP kinases C terminal YYK_RS01455 PF00288 GHMP kinases N terminal domain YYK_RS01460 PF01070 FMN-dependent dehydrogenase YYK_RS01465 PF00005 ABC transporter YYK_RS01465 PF00664 ABC transporter transmembrane region YYK_RS01470 PF00664 ABC transporter transmembrane region YYK_RS01470 PF00005 ABC transporter YYK_RS01480 PF05167 Uncharacterised ACR (DUF711) YYK_RS01485 PF00300 Histidine phosphatase superfamily (branch 1) YYK_RS01490 PF01628 HrcA protein C terminal domain YYK_RS01490 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding YYK_RS01495 PF01025 GrpE YYK_RS01500 PF00012 Hsp70 protein YYK_RS01505 PF01556 DnaJ C terminal domain YYK_RS01505 PF00226 DnaJ domain YYK_RS01505 PF00684 DnaJ central domain YYK_RS01510 PF03099 Biotin/lipoate A/B protein ligase family YYK_RS01515 PF01425 Amidase YYK_RS01520 PF00497 Bacterial extracellular solute-binding proteins, family 3 YYK_RS01525 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS01530 PF13443 Cro/C1-type HTH DNA-binding domain YYK_RS01545 PF01475 Ferric uptake regulator family YYK_RS01550 PF01416 tRNA pseudouridine synthase YYK_RS01565 PF04260 Protein of unknown function (DUF436) YYK_RS01590 PF12697 Alpha/beta hydrolase family YYK_RS01595 PF00106 short chain dehydrogenase YYK_RS01600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YYK_RS01600 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS01605 PF02082 Transcriptional regulator YYK_RS01625 PF05697 Bacterial trigger factor protein (TF) YYK_RS01625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YYK_RS01625 PF05698 Bacterial trigger factor protein (TF) C-terminus YYK_RS01645 PF05066 HB1, ASXL, restriction endonuclease HTH domain YYK_RS01650 PF06418 CTP synthase N-terminus YYK_RS01650 PF00117 Glutamine amidotransferase class-I YYK_RS01660 PF01116 Fructose-bisphosphate aldolase class-II YYK_RS01665 PF00830 Ribosomal L28 family YYK_RS01700 PF00270 DEAD/DEAH box helicase YYK_RS01700 PF00271 Helicase conserved C-terminal domain YYK_RS01700 PF17191 RecG wedge domain YYK_RS01705 PF00710 Asparaginase, N-terminal YYK_RS01705 PF17763 Glutaminase/Asparaginase C-terminal domain YYK_RS01710 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YYK_RS01720 PF00582 Universal stress protein family YYK_RS01725 PF00155 Aminotransferase class I and II YYK_RS01730 PF08222 CodY helix-turn-helix domain YYK_RS01730 PF06018 CodY GAF-like domain YYK_RS01735 PF00857 Isochorismatase family YYK_RS01740 PF01245 Ribosomal protein L19 YYK_RS01750 PF02686 Glu-tRNAGln amidotransferase C subunit YYK_RS01755 PF01425 Amidase YYK_RS01760 PF02637 GatB domain YYK_RS01760 PF02934 GatB/GatE catalytic domain YYK_RS01765 PF01966 HD domain YYK_RS01765 PF13286 Phosphohydrolase-associated domain YYK_RS01770 PF00356 Bacterial regulatory proteins, lacI family YYK_RS01775 PF08544 GHMP kinases C terminal YYK_RS01775 PF00288 GHMP kinases N terminal domain YYK_RS01775 PF10509 Galactokinase galactose-binding signature YYK_RS01780 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain YYK_RS01780 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain YYK_RS01785 PF00892 EamA-like transporter family YYK_RS01790 PF03932 CutC family YYK_RS01800 PF13419 Haloacid dehalogenase-like hydrolase YYK_RS01805 PF01926 50S ribosome-binding GTPase YYK_RS01810 PF01985 CRS1 / YhbY (CRM) domain YYK_RS01815 PF01467 Cytidylyltransferase-like YYK_RS01820 PF01966 HD domain YYK_RS01840 PF13649 Methyltransferase domain YYK_RS01845 PF07693 KAP family P-loop domain YYK_RS01850 PF05636 HIGH Nucleotidyl Transferase YYK_RS01855 PF07739 TipAS antibiotic-recognition domain YYK_RS01855 PF13411 MerR HTH family regulatory protein YYK_RS01860 PF00350 Dynamin family YYK_RS01880 PF01327 Polypeptide deformylase YYK_RS01885 PF10431 C-terminal, D2-small domain, of ClpB protein YYK_RS01885 PF17871 AAA lid domain YYK_RS01885 PF07724 AAA domain (Cdc48 subfamily) YYK_RS01885 PF00004 ATPase family associated with various cellular activities (AAA) YYK_RS01890 PF02446 4-alpha-glucanotransferase YYK_RS01895 PF00343 Carbohydrate phosphorylase YYK_RS01905 PF03372 Endonuclease/Exonuclease/phosphatase family YYK_RS01910 PF02378 Phosphotransferase system, EIIC YYK_RS01910 PF00367 phosphotransferase system, EIIB YYK_RS01910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YYK_RS01925 PF01709 Transcriptional regulator YYK_RS01940 PF07155 ECF-type riboflavin transporter, S component YYK_RS01950 PF12368 Rhodanase C-terminal YYK_RS01950 PF17773 UPF0176 acylphosphatase like domain YYK_RS01950 PF00581 Rhodanese-like domain YYK_RS01960 PF12558 ATP-binding cassette cobalt transporter YYK_RS01960 PF00005 ABC transporter YYK_RS01970 PF00313 'Cold-shock' DNA-binding domain YYK_RS01975 PF02527 rRNA small subunit methyltransferase G YYK_RS01980 PF00905 Penicillin binding protein transpeptidase domain YYK_RS01980 PF00912 Transglycosylase YYK_RS01985 PF03838 Recombination protein U YYK_RS01990 PF06908 YspA SLOG family YYK_RS01995 PF05103 DivIVA protein YYK_RS02000 PF02926 THUMP domain YYK_RS02000 PF01170 Putative RNA methylase family UPF0020 YYK_RS02005 PF18041 MapZ extracellular domain 1 YYK_RS02005 PF18708 MapZ extracellular C-terminal domain 2 YYK_RS02010 PF02664 S-Ribosylhomocysteinase (LuxS) YYK_RS02015 PF01966 HD domain YYK_RS02015 PF00013 KH domain YYK_RS02015 PF12072 Domain of unknown function (DUF3552) YYK_RS02020 PF00625 Guanylate kinase YYK_RS02025 PF01192 RNA polymerase Rpb6 YYK_RS02030 PF00271 Helicase conserved C-terminal domain YYK_RS02030 PF18074 Primosomal protein N C-terminal domain YYK_RS02030 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YYK_RS02030 PF04851 Type III restriction enzyme, res subunit YYK_RS02030 PF17764 3′ DNA-binding domain (3′BD) YYK_RS02035 PF00551 Formyl transferase YYK_RS02035 PF02911 Formyl transferase, C-terminal domain YYK_RS02040 PF01029 NusB family YYK_RS02040 PF01189 16S rRNA methyltransferase RsmB/F YYK_RS02050 PF00069 Protein kinase domain YYK_RS02050 PF03793 PASTA domain YYK_RS02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS02060 PF07730 Histidine kinase YYK_RS02065 PF00072 Response regulator receiver domain YYK_RS02065 PF00196 Bacterial regulatory proteins, luxR family YYK_RS02070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YYK_RS02075 PF00575 S1 RNA binding domain YYK_RS02080 PF00291 Pyridoxal-phosphate dependent enzyme YYK_RS02085 PF01205 Uncharacterized protein family UPF0029 YYK_RS02085 PF09186 Domain of unknown function (DUF1949) YYK_RS02090 PF04851 Type III restriction enzyme, res subunit YYK_RS02090 PF00271 Helicase conserved C-terminal domain YYK_RS02100 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus YYK_RS02100 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YYK_RS02170 PF05958 tRNA (Uracil-5-)-methyltransferase YYK_RS02170 PF01938 TRAM domain YYK_RS02175 PF02631 RecX family YYK_RS02180 PF04167 Protein of unknown function (DUF402) YYK_RS02190 PF07702 UTRA domain YYK_RS02190 PF00392 Bacterial regulatory proteins, gntR family YYK_RS02195 PF07702 UTRA domain YYK_RS02195 PF00392 Bacterial regulatory proteins, gntR family YYK_RS02200 PF01301 Glycosyl hydrolases family 35 YYK_RS02205 PF03830 PTS system sorbose subfamily IIB component YYK_RS02215 PF03613 PTS system mannose/fructose/sorbose family IID component YYK_RS02225 PF01263 Aldose 1-epimerase YYK_RS02250 PF00133 tRNA synthetases class I (I, L, M and V) YYK_RS02250 PF08264 Anticodon-binding domain of tRNA YYK_RS02250 PF10458 Valyl tRNA synthetase tRNA binding arm YYK_RS02260 PF17841 BID domain of Bartonella effector protein (Bep) YYK_RS02260 PF02661 Fic/DOC family YYK_RS02285 PF03590 Aspartate-ammonia ligase YYK_RS02290 PF03144 Elongation factor Tu domain 2 YYK_RS02290 PF00009 Elongation factor Tu GTP binding domain YYK_RS02290 PF14492 Elongation Factor G, domain II YYK_RS02290 PF00679 Elongation factor G C-terminus YYK_RS02305 PF10502 Signal peptidase, peptidase S26 YYK_RS02315 PF07581 The GLUG motif YYK_RS02315 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) YYK_RS02330 PF08245 Mur ligase middle domain YYK_RS02330 PF02875 Mur ligase family, glutamate ligase domain YYK_RS02335 PF04101 Glycosyltransferase family 28 C-terminal domain YYK_RS02335 PF03033 Glycosyltransferase family 28 N-terminal domain YYK_RS02340 PF08478 POTRA domain, FtsQ-type YYK_RS02345 PF02491 SHS2 domain inserted in FTSA YYK_RS02345 PF11983 Membrane-attachment and polymerisation-promoting switch YYK_RS02350 PF12327 FtsZ family, C-terminal domain YYK_RS02350 PF00091 Tubulin/FtsZ family, GTPase domain YYK_RS02355 PF01168 Alanine racemase, N-terminal domain YYK_RS02360 PF04472 Cell division protein SepF YYK_RS02375 PF05103 DivIVA protein YYK_RS02385 PF00133 tRNA synthetases class I (I, L, M and V) YYK_RS02385 PF08264 Anticodon-binding domain of tRNA YYK_RS02390 PF10431 C-terminal, D2-small domain, of ClpB protein YYK_RS02390 PF17871 AAA lid domain YYK_RS02390 PF07724 AAA domain (Cdc48 subfamily) YYK_RS02390 PF00004 ATPase family associated with various cellular activities (AAA) YYK_RS02395 PF08796 Protein of unknown function (DUF1797) YYK_RS02400 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS02405 PF00005 ABC transporter YYK_RS02410 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YYK_RS02410 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YYK_RS02420 PF10502 Signal peptidase, peptidase S26 YYK_RS02430 PF13359 DDE superfamily endonuclease YYK_RS02430 PF13613 Helix-turn-helix of DDE superfamily endonuclease YYK_RS02440 PF13411 MerR HTH family regulatory protein YYK_RS02455 PF01136 Peptidase family U32 YYK_RS02455 PF16325 Peptidase family U32 C-terminal domain YYK_RS02470 PF02229 Transcriptional Coactivator p15 (PC4) YYK_RS02475 PF02632 BioY family YYK_RS02480 PF04199 Putative cyclase YYK_RS02485 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS02485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYK_RS02490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YYK_RS02495 PF00005 ABC transporter YYK_RS02500 PF02687 FtsX-like permease family YYK_RS02500 PF12704 MacB-like periplasmic core domain YYK_RS02515 PF01336 OB-fold nucleic acid binding domain YYK_RS02515 PF00152 tRNA synthetases class II (D, K and N) YYK_RS02525 PF04073 Aminoacyl-tRNA editing domain YYK_RS02535 PF09515 Thiamine transporter protein (Thia_YuaJ) YYK_RS02555 PF01098 Cell cycle protein YYK_RS02560 PF00311 Phosphoenolpyruvate carboxylase YYK_RS02565 PF04542 Sigma-70 region 2 YYK_RS02565 PF08281 Sigma-70, region 4 YYK_RS02575 PF00009 Elongation factor Tu GTP binding domain YYK_RS02575 PF03143 Elongation factor Tu C-terminal domain YYK_RS02575 PF03144 Elongation factor Tu domain 2 YYK_RS02580 PF00121 Triosephosphate isomerase YYK_RS02590 PF01966 HD domain YYK_RS02605 PF13936 Helix-turn-helix domain YYK_RS02605 PF00665 Integrase core domain YYK_RS02610 PF00962 Adenosine/AMP deaminase YYK_RS02620 PF00005 ABC transporter YYK_RS02625 PF00392 Bacterial regulatory proteins, gntR family YYK_RS02625 PF07702 UTRA domain YYK_RS02630 PF14579 Helix-hairpin-helix motif YYK_RS02630 PF02811 PHP domain YYK_RS02630 PF01336 OB-fold nucleic acid binding domain YYK_RS02630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YYK_RS02630 PF07733 Bacterial DNA polymerase III alpha NTPase domain YYK_RS02635 PF00365 Phosphofructokinase YYK_RS02640 PF00224 Pyruvate kinase, barrel domain YYK_RS02640 PF02887 Pyruvate kinase, alpha/beta domain YYK_RS02645 PF09028 Mac 1 YYK_RS02650 PF01266 FAD dependent oxidoreductase YYK_RS02655 PF07859 alpha/beta hydrolase fold YYK_RS02655 PF13472 GDSL-like Lipase/Acylhydrolase family YYK_RS02660 PF10502 Signal peptidase, peptidase S26 YYK_RS02665 PF01380 SIS domain YYK_RS02670 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS02675 PF00005 ABC transporter YYK_RS02680 PF00497 Bacterial extracellular solute-binding proteins, family 3 YYK_RS02685 PF00753 Metallo-beta-lactamase superfamily YYK_RS02690 PF00929 Exonuclease YYK_RS02690 PF13307 Helicase C-terminal domain YYK_RS02695 PF00696 Amino acid kinase family YYK_RS02695 PF01472 PUA domain YYK_RS02700 PF00171 Aldehyde dehydrogenase family YYK_RS02705 PF03807 NADP oxidoreductase coenzyme F420-dependent YYK_RS02705 PF14748 Pyrroline-5-carboxylate reductase dimerisation YYK_RS02715 PF02645 Uncharacterised protein, DegV family COG1307 YYK_RS02720 PF00155 Aminotransferase class I and II YYK_RS02720 PF00392 Bacterial regulatory proteins, gntR family YYK_RS02725 PF03883 Peroxide stress protein YaaA YYK_RS02735 PF02706 Chain length determinant protein YYK_RS02740 PF13614 AAA domain YYK_RS02750 PF02397 Bacterial sugar transferase YYK_RS02760 PF13439 Glycosyltransferase Family 4 YYK_RS02760 PF00534 Glycosyl transferases group 1 YYK_RS02775 PF01501 Glycosyl transferase family 8 YYK_RS02775 PF00535 Glycosyl transferase family 2 YYK_RS02780 PF01501 Glycosyl transferase family 8 YYK_RS02780 PF00535 Glycosyl transferase family 2 YYK_RS02805 PF08666 SAF domain YYK_RS02805 PF03102 NeuB family YYK_RS02810 PF02350 UDP-N-acetylglucosamine 2-epimerase YYK_RS02820 PF13472 GDSL-like Lipase/Acylhydrolase family YYK_RS02820 PF02348 Cytidylyltransferase YYK_RS02830 PF01609 Transposase DDE domain YYK_RS02875 PF02899 Phage integrase, N-terminal SAM-like domain YYK_RS02875 PF00589 Phage integrase family YYK_RS02880 PF02899 Phage integrase, N-terminal SAM-like domain YYK_RS02880 PF00589 Phage integrase family YYK_RS02900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YYK_RS02905 PF01202 Shikimate kinase YYK_RS02910 PF00800 Prephenate dehydratase YYK_RS02915 PF03816 Cell envelope-related transcriptional attenuator domain YYK_RS02920 PF05958 tRNA (Uracil-5-)-methyltransferase YYK_RS02925 PF03275 UDP-galactopyranose mutase YYK_RS02930 PF02525 Flavodoxin-like fold YYK_RS02955 PF00155 Aminotransferase class I and II YYK_RS02960 PF01336 OB-fold nucleic acid binding domain YYK_RS02960 PF00152 tRNA synthetases class II (D, K and N) YYK_RS02975 PF01554 MatE YYK_RS02980 PF01042 Endoribonuclease L-PSP YYK_RS02985 PF03668 P-loop ATPase protein family YYK_RS02990 PF01933 Uncharacterised protein family UPF0052 YYK_RS02995 PF02650 WhiA C-terminal HTH domain YYK_RS02995 PF14527 WhiA LAGLIDADG-like domain YYK_RS02995 PF10298 WhiA N-terminal LAGLIDADG-like domain YYK_RS03010 PF13673 Acetyltransferase (GNAT) domain YYK_RS03015 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YYK_RS03015 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YYK_RS03020 PF00696 Amino acid kinase family YYK_RS03025 PF03606 C4-dicarboxylate anaerobic carrier YYK_RS03030 PF01546 Peptidase family M20/M25/M40 YYK_RS03035 PF04650 YSIRK type signal peptide YYK_RS03035 PF07501 G5 domain YYK_RS03035 PF00728 Glycosyl hydrolase family 20, catalytic domain YYK_RS03035 PF00746 LPXTG cell wall anchor motif YYK_RS03040 PF02863 Arginine repressor, C-terminal domain YYK_RS03040 PF01316 Arginine repressor, DNA binding domain YYK_RS03045 PF02547 Queuosine biosynthesis protein YYK_RS03050 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YYK_RS03075 PF00501 AMP-binding enzyme YYK_RS03075 PF13193 AMP-binding enzyme C-terminal domain YYK_RS03080 PF03062 MBOAT, membrane-bound O-acyltransferase family YYK_RS03085 PF00550 Phosphopantetheine attachment site YYK_RS03090 PF04914 DltD protein YYK_RS03105 PF13409 Glutathione S-transferase, N-terminal domain YYK_RS03110 PF01479 S4 domain YYK_RS03110 PF00849 RNA pseudouridylate synthase YYK_RS03115 PF00255 Glutathione peroxidase YYK_RS03120 PF01032 FecCD transport family YYK_RS03125 PF01032 FecCD transport family YYK_RS03130 PF01497 Periplasmic binding protein YYK_RS03135 PF00005 ABC transporter YYK_RS03140 PF08245 Mur ligase middle domain YYK_RS03140 PF02875 Mur ligase family, glutamate ligase domain YYK_RS03145 PF01553 Acyltransferase YYK_RS03150 PF10531 SLBB domain YYK_RS03155 PF00753 Metallo-beta-lactamase superfamily YYK_RS03155 PF13567 Domain of unknown function (DUF4131) YYK_RS03155 PF03772 Competence protein YYK_RS03165 PF00571 CBS domain YYK_RS03180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 YYK_RS03180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) YYK_RS03185 PF02223 Thymidylate kinase YYK_RS03190 PF09115 DNA polymerase III, delta subunit, C terminal YYK_RS03195 PF06156 Initiation control protein YabA YYK_RS03200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YYK_RS03205 PF00266 Aminotransferase class-V YYK_RS03215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YYK_RS03215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YYK_RS03215 PF01842 ACT domain YYK_RS03220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YYK_RS03220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YYK_RS03225 PF03960 ArsC family YYK_RS03235 PF03372 Endonuclease/Exonuclease/phosphatase family YYK_RS03245 PF13520 Amino acid permease YYK_RS03275 PF18273 Type III R-M EcoP15I C-terminal domain YYK_RS03275 PF01555 DNA methylase YYK_RS03280 PF18273 Type III R-M EcoP15I C-terminal domain YYK_RS03280 PF01555 DNA methylase YYK_RS03285 PF04851 Type III restriction enzyme, res subunit YYK_RS03285 PF08774 VRR-NUC domain YYK_RS03290 PF01797 Transposase IS200 like YYK_RS03295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YYK_RS03295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YYK_RS03295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YYK_RS03295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YYK_RS03300 PF12822 ECF transporter, substrate-specific component YYK_RS03305 PF02441 Flavoprotein YYK_RS03310 PF04127 DNA / pantothenate metabolism flavoprotein YYK_RS03310 PF02441 Flavoprotein YYK_RS03315 PF01268 Formate--tetrahydrofolate ligase YYK_RS03325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYK_RS03325 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS03330 PF11867 Domain of unknown function (DUF3387) YYK_RS03330 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YYK_RS03330 PF18766 SWI2/SNF2 ATPase YYK_RS03335 PF12161 HsdM N-terminal domain YYK_RS03335 PF02384 N-6 DNA Methylase YYK_RS03345 PF01420 Type I restriction modification DNA specificity domain YYK_RS03380 PF04055 Radical SAM superfamily YYK_RS03385 PF00455 DeoR C terminal sensor domain YYK_RS03385 PF08220 DeoR-like helix-turn-helix domain YYK_RS03390 PF04198 Putative sugar-binding domain YYK_RS03390 PF13936 Helix-turn-helix domain YYK_RS03395 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YYK_RS03400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YYK_RS03405 PF02378 Phosphotransferase system, EIIC YYK_RS03410 PF02901 Pyruvate formate lyase-like YYK_RS03410 PF01228 Glycine radical YYK_RS03415 PF00923 Transaldolase/Fructose-6-phosphate aldolase YYK_RS03425 PF00465 Iron-containing alcohol dehydrogenase YYK_RS03430 PF02774 Semialdehyde dehydrogenase, dimerisation domain YYK_RS03430 PF01118 Semialdehyde dehydrogenase, NAD binding domain YYK_RS03435 PF00701 Dihydrodipicolinate synthetase family YYK_RS03440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYK_RS03440 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS03450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YYK_RS03450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YYK_RS03455 PF01266 FAD dependent oxidoreductase YYK_RS03455 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YYK_RS03460 PF00230 Major intrinsic protein YYK_RS03465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YYK_RS03475 PF01432 Peptidase family M3 YYK_RS03475 PF08439 Oligopeptidase F YYK_RS03485 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS03485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYK_RS03490 PF00580 UvrD/REP helicase N-terminal domain YYK_RS03490 PF13361 UvrD-like helicase C-terminal domain YYK_RS03500 PF08543 Phosphomethylpyrimidine kinase YYK_RS03505 PF02110 Hydroxyethylthiazole kinase family YYK_RS03510 PF02581 Thiamine monophosphate synthase YYK_RS03520 PF01048 Phosphorylase superfamily YYK_RS03530 PF02361 Cobalt transport protein YYK_RS03535 PF00005 ABC transporter YYK_RS03540 PF00005 ABC transporter YYK_RS03545 PF13419 Haloacid dehalogenase-like hydrolase YYK_RS03575 PF00005 ABC transporter YYK_RS03580 PF02151 UvrB/uvrC motif YYK_RS03580 PF01541 GIY-YIG catalytic domain YYK_RS03580 PF08459 UvrC Helix-hairpin-helix N-terminal YYK_RS03590 PF09269 Domain of unknown function (DUF1967) YYK_RS03590 PF01018 GTP1/OBG YYK_RS03590 PF01926 50S ribosome-binding GTPase YYK_RS03600 PF04650 YSIRK type signal peptide YYK_RS03600 PF00746 LPXTG cell wall anchor motif YYK_RS03600 PF06458 MucBP domain YYK_RS03605 PF12705 PD-(D/E)XK nuclease superfamily YYK_RS03610 PF12705 PD-(D/E)XK nuclease superfamily YYK_RS03610 PF00580 UvrD/REP helicase N-terminal domain YYK_RS03610 PF13361 UvrD-like helicase C-terminal domain YYK_RS03615 PF02660 Glycerol-3-phosphate acyltransferase YYK_RS03620 PF00204 DNA gyrase B YYK_RS03620 PF01751 Toprim domain YYK_RS03620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS03620 PF00986 DNA gyrase B subunit, carboxyl terminus YYK_RS03645 PF03989 DNA gyrase C-terminal domain, beta-propeller YYK_RS03645 PF00521 DNA gyrase/topoisomerase IV, subunit A YYK_RS03655 PF01063 Amino-transferase class IV YYK_RS03675 PF00575 S1 RNA binding domain YYK_RS03700 PF00266 Aminotransferase class-V YYK_RS03705 PF02568 Thiamine biosynthesis protein (ThiI) YYK_RS03705 PF02926 THUMP domain YYK_RS03710 PF05525 Branched-chain amino acid transport protein YYK_RS03715 PF00829 Ribosomal prokaryotic L21 protein YYK_RS03720 PF01016 Ribosomal L27 protein YYK_RS03730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YYK_RS03730 PF03466 LysR substrate binding domain YYK_RS03735 PF01252 Signal peptidase (SPase) II YYK_RS03740 PF01479 S4 domain YYK_RS03740 PF00849 RNA pseudouridylate synthase YYK_RS03745 PF03831 PhnA domain YYK_RS03745 PF08274 PhnA Zinc-Ribbon YYK_RS03755 PF00156 Phosphoribosyl transferase domain YYK_RS03760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YYK_RS03760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YYK_RS03765 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YYK_RS03765 PF00117 Glutamine amidotransferase class-I YYK_RS03770 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YYK_RS03770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YYK_RS03770 PF02142 MGS-like domain YYK_RS03775 PF04445 Putative SAM-dependent methyltransferase YYK_RS03780 PF01470 Pyroglutamyl peptidase YYK_RS03790 PF00886 Ribosomal protein S16 YYK_RS03800 PF00664 ABC transporter transmembrane region YYK_RS03800 PF00005 ABC transporter YYK_RS03805 PF00664 ABC transporter transmembrane region YYK_RS03805 PF00005 ABC transporter YYK_RS03810 PF01522 Polysaccharide deacetylase YYK_RS03815 PF03447 Homoserine dehydrogenase, NAD binding domain YYK_RS03815 PF00742 Homoserine dehydrogenase YYK_RS03820 PF08544 GHMP kinases C terminal YYK_RS03820 PF00288 GHMP kinases N terminal domain YYK_RS03825 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YYK_RS03825 PF01565 FAD binding domain YYK_RS03830 PF00005 ABC transporter YYK_RS03830 PF08402 TOBE domain YYK_RS03835 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS03840 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS03845 PF13416 Bacterial extracellular solute-binding protein YYK_RS03850 PF00654 Voltage gated chloride channel YYK_RS03860 PF02225 PA domain YYK_RS03860 PF00082 Subtilase family YYK_RS03860 PF06280 Fn3-like domain YYK_RS03865 PF01256 Carbohydrate kinase YYK_RS03870 PF10576 Iron-sulfur binding domain of endonuclease III YYK_RS03870 PF00633 Helix-hairpin-helix motif YYK_RS03870 PF00730 HhH-GPD superfamily base excision DNA repair protein YYK_RS03875 PF00478 IMP dehydrogenase / GMP reductase domain YYK_RS03885 PF01782 RimM N-terminal domain YYK_RS03885 PF05239 PRC-barrel domain YYK_RS03890 PF01746 tRNA (Guanine-1)-methyltransferase YYK_RS03895 PF00155 Aminotransferase class I and II YYK_RS03900 PF08220 DeoR-like helix-turn-helix domain YYK_RS03900 PF00455 DeoR C terminal sensor domain YYK_RS03905 PF00294 pfkB family carbohydrate kinase YYK_RS03910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YYK_RS03910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YYK_RS03920 PF02645 Uncharacterised protein, DegV family COG1307 YYK_RS03925 PF05173 Dihydrodipicolinate reductase, C-terminus YYK_RS03925 PF01113 Dihydrodipicolinate reductase, N-terminus YYK_RS03930 PF13735 tRNA nucleotidyltransferase domain 2 putative YYK_RS03930 PF01743 Poly A polymerase head domain YYK_RS03930 PF12627 Probable RNA and SrmB- binding site of polymerase A YYK_RS03935 PF16326 ABC transporter C-terminal domain YYK_RS03935 PF12848 ABC transporter YYK_RS03935 PF00005 ABC transporter YYK_RS03945 PF00480 ROK family YYK_RS03960 PF00303 Thymidylate synthase YYK_RS03965 PF00186 Dihydrofolate reductase YYK_RS03975 PF07724 AAA domain (Cdc48 subfamily) YYK_RS03975 PF06689 ClpX C4-type zinc finger YYK_RS03975 PF10431 C-terminal, D2-small domain, of ClpB protein YYK_RS03980 PF01926 50S ribosome-binding GTPase YYK_RS03985 PF00334 Nucleoside diphosphate kinase YYK_RS03995 PF00679 Elongation factor G C-terminus YYK_RS03995 PF14492 Elongation Factor G, domain II YYK_RS03995 PF03144 Elongation factor Tu domain 2 YYK_RS03995 PF06421 GTP-binding protein LepA C-terminus YYK_RS03995 PF00009 Elongation factor Tu GTP binding domain YYK_RS04000 PF01361 Tautomerase enzyme YYK_RS04015 PF00265 Thymidine kinase YYK_RS04020 PF00472 RF-1 domain YYK_RS04020 PF03462 PCRF domain YYK_RS04025 PF05175 Methyltransferase small domain YYK_RS04030 PF03481 Putative GTP-binding controlling metal-binding YYK_RS04030 PF01300 Telomere recombination YYK_RS04040 PF00464 Serine hydroxymethyltransferase YYK_RS04055 PF00106 short chain dehydrogenase YYK_RS04080 PF07728 AAA domain (dynein-related subfamily) YYK_RS04080 PF12102 Domain of unknown function (DUF3578) YYK_RS04090 PF00117 Glutamine amidotransferase class-I YYK_RS04090 PF02540 NAD synthase YYK_RS04090 PF00958 GMP synthase C terminal domain YYK_RS04095 PF07702 UTRA domain YYK_RS04095 PF00392 Bacterial regulatory proteins, gntR family YYK_RS04100 PF04297 Putative helix-turn-helix protein, YlxM / p13 like YYK_RS04105 PF00448 SRP54-type protein, GTPase domain YYK_RS04105 PF02881 SRP54-type protein, helical bundle domain YYK_RS04105 PF02978 Signal peptide binding domain YYK_RS04135 PF13495 Phage integrase, N-terminal SAM-like domain YYK_RS04135 PF00589 Phage integrase family YYK_RS04140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YYK_RS04140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YYK_RS04140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YYK_RS04140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YYK_RS04145 PF00512 His Kinase A (phospho-acceptor) domain YYK_RS04145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS04150 PF00486 Transcriptional regulatory protein, C terminal YYK_RS04150 PF00072 Response regulator receiver domain YYK_RS04170 PF00005 ABC transporter YYK_RS04185 PF00005 ABC transporter YYK_RS04210 PF00756 Putative esterase YYK_RS04210 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase YYK_RS04220 PF12833 Helix-turn-helix domain YYK_RS04220 PF06445 GyrI-like small molecule binding domain YYK_RS04225 PF01134 Glucose inhibited division protein A YYK_RS04230 PF13344 Haloacid dehalogenase-like hydrolase YYK_RS04235 PF00542 Ribosomal protein L7/L12 C-terminal domain YYK_RS04235 PF16320 Ribosomal protein L7/L12 dimerisation domain YYK_RS04240 PF00466 Ribosomal protein L10 YYK_RS04245 PF01131 DNA topoisomerase YYK_RS04245 PF01751 Toprim domain YYK_RS04245 PF01396 Topoisomerase DNA binding C4 zinc finger YYK_RS04250 PF02481 DNA recombination-mediator protein A YYK_RS04250 PF18255 DNA processing protein A sterile alpha motif domain YYK_RS04255 PF14602 Hexapeptide repeat of succinyl-transferase YYK_RS04255 PF12464 Maltose acetyltransferase YYK_RS04260 PF02583 Metal-sensitive transcriptional repressor YYK_RS04265 PF00581 Rhodanese-like domain YYK_RS04270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYK_RS04270 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS04280 PF03006 Haemolysin-III related YYK_RS04290 PF01351 Ribonuclease HII YYK_RS04295 PF01926 50S ribosome-binding GTPase YYK_RS04305 PF02545 Maf-like protein YYK_RS04310 PF02872 5'-nucleotidase, C-terminal domain YYK_RS04310 PF00149 Calcineurin-like phosphoesterase YYK_RS04315 PF01979 Amidohydrolase family YYK_RS04320 PF03167 Uracil DNA glycosylase superfamily YYK_RS04325 PF00535 Glycosyl transferase family 2 YYK_RS04330 PF00156 Phosphoribosyl transferase domain YYK_RS04335 PF00719 Inorganic pyrophosphatase YYK_RS04340 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YYK_RS04345 PF01180 Dihydroorotate dehydrogenase YYK_RS04350 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B YYK_RS04355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YYK_RS04355 PF03466 LysR substrate binding domain YYK_RS04360 PF00483 Nucleotidyl transferase YYK_RS04365 PF00483 Nucleotidyl transferase YYK_RS04365 PF00132 Bacterial transferase hexapeptide (six repeats) YYK_RS04370 PF00534 Glycosyl transferases group 1 YYK_RS04370 PF08323 Starch synthase catalytic domain YYK_RS04375 PF00128 Alpha amylase, catalytic domain YYK_RS04375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YYK_RS04375 PF02806 Alpha amylase, C-terminal all-beta domain YYK_RS04380 PF00497 Bacterial extracellular solute-binding proteins, family 3 YYK_RS04385 PF00497 Bacterial extracellular solute-binding proteins, family 3 YYK_RS04390 PF00293 NUDIX domain YYK_RS04400 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region YYK_RS04400 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region YYK_RS04400 PF04650 YSIRK type signal peptide YYK_RS04400 PF07501 G5 domain YYK_RS04405 PF17757 UvrB interaction domain YYK_RS04405 PF12344 Ultra-violet resistance protein B YYK_RS04405 PF00271 Helicase conserved C-terminal domain YYK_RS04405 PF02151 UvrB/uvrC motif YYK_RS04405 PF04851 Type III restriction enzyme, res subunit YYK_RS04415 PF12344 Ultra-violet resistance protein B YYK_RS04415 PF00271 Helicase conserved C-terminal domain YYK_RS04415 PF04851 Type III restriction enzyme, res subunit YYK_RS04415 PF02151 UvrB/uvrC motif YYK_RS04415 PF17757 UvrB interaction domain YYK_RS04420 PF00497 Bacterial extracellular solute-binding proteins, family 3 YYK_RS04425 PF00005 ABC transporter YYK_RS04435 PF00005 ABC transporter YYK_RS04435 PF16326 ABC transporter C-terminal domain YYK_RS04435 PF12848 ABC transporter YYK_RS04440 PF01053 Cys/Met metabolism PLP-dependent enzyme YYK_RS04455 PF01263 Aldose 1-epimerase YYK_RS04460 PF00232 Glycosyl hydrolase family 1 YYK_RS04465 PF02378 Phosphotransferase system, EIIC YYK_RS04465 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YYK_RS04470 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YYK_RS04475 PF03123 CAT RNA binding domain YYK_RS04475 PF00874 PRD domain YYK_RS04480 PF01791 DeoC/LacD family aldolase YYK_RS04485 PF00294 pfkB family carbohydrate kinase YYK_RS04490 PF00294 pfkB family carbohydrate kinase YYK_RS04495 PF02502 Ribose/Galactose Isomerase YYK_RS04500 PF02502 Ribose/Galactose Isomerase YYK_RS04510 PF00455 DeoR C terminal sensor domain YYK_RS04510 PF08220 DeoR-like helix-turn-helix domain YYK_RS04540 PF01381 Helix-turn-helix YYK_RS04540 PF08671 Anti-repressor SinI YYK_RS04545 PF14815 NUDIX domain YYK_RS04545 PF00730 HhH-GPD superfamily base excision DNA repair protein YYK_RS04555 PF00664 ABC transporter transmembrane region YYK_RS04555 PF00005 ABC transporter YYK_RS04560 PF00005 ABC transporter YYK_RS04560 PF00664 ABC transporter transmembrane region YYK_RS04565 PF01515 Phosphate acetyl/butaryl transferase YYK_RS04570 PF00849 RNA pseudouridylate synthase YYK_RS04575 PF01513 ATP-NAD kinase YYK_RS04580 PF04607 Region found in RelA / SpoT proteins YYK_RS04585 PF01928 CYTH domain YYK_RS04590 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YYK_RS04590 PF14572 Phosphoribosyl synthetase-associated domain YYK_RS04595 PF00266 Aminotransferase class-V YYK_RS04610 PF02629 CoA binding domain YYK_RS04610 PF06971 Putative DNA-binding protein N-terminus YYK_RS04615 PF07722 Peptidase C26 YYK_RS04620 PF04002 RadC-like JAB domain YYK_RS04625 PF04203 Sortase domain YYK_RS04630 PF00521 DNA gyrase/topoisomerase IV, subunit A YYK_RS04630 PF03989 DNA gyrase C-terminal domain, beta-propeller YYK_RS04635 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YYK_RS04635 PF00056 lactate/malate dehydrogenase, NAD binding domain YYK_RS04640 PF01872 RibD C-terminal domain YYK_RS04645 PF02653 Branched-chain amino acid transport system / permease component YYK_RS04650 PF02653 Branched-chain amino acid transport system / permease component YYK_RS04655 PF00005 ABC transporter YYK_RS04660 PF02608 ABC transporter substrate-binding protein PnrA-like YYK_RS04665 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YYK_RS04670 PF01791 DeoC/LacD family aldolase YYK_RS04675 PF02885 Glycosyl transferase family, helical bundle domain YYK_RS04675 PF00591 Glycosyl transferase family, a/b domain YYK_RS04675 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YYK_RS04680 PF05175 Methyltransferase small domain YYK_RS04685 PF00485 Phosphoribulokinase / Uridine kinase family YYK_RS04690 PF01649 Ribosomal protein S20 YYK_RS04705 PF00512 His Kinase A (phospho-acceptor) domain YYK_RS04705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS04710 PF00072 Response regulator receiver domain YYK_RS04710 PF00486 Transcriptional regulatory protein, C terminal YYK_RS04725 PF01895 PhoU domain YYK_RS04730 PF00005 ABC transporter YYK_RS04735 PF00005 ABC transporter YYK_RS04740 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS04745 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS04750 PF12849 PBP superfamily domain YYK_RS04755 PF17126 RsmF rRNA methyltransferase first C-terminal domain YYK_RS04755 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF YYK_RS04755 PF01189 16S rRNA methyltransferase RsmB/F YYK_RS04760 PF00459 Inositol monophosphatase family YYK_RS04765 PF05256 Uncharacterised protein family (UPF0223) YYK_RS04770 PF03960 ArsC family YYK_RS04775 PF07885 Ion channel YYK_RS04780 PF01687 Riboflavin kinase YYK_RS04780 PF06574 FAD synthetase YYK_RS04785 PF01509 TruB family pseudouridylate synthase (N terminal domain) YYK_RS04785 PF16198 tRNA pseudouridylate synthase B C-terminal domain YYK_RS04850 PF01546 Peptidase family M20/M25/M40 YYK_RS04850 PF07687 Peptidase dimerisation domain YYK_RS04885 PF06993 Protein of unknown function (DUF1304) YYK_RS04890 PF01047 MarR family YYK_RS04905 PF16916 Dimerisation domain of Zinc Transporter YYK_RS04905 PF01545 Cation efflux family YYK_RS04915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YYK_RS04920 PF02152 Dihydroneopterin aldolase YYK_RS04925 PF00809 Pterin binding enzyme YYK_RS04930 PF01227 GTP cyclohydrolase I YYK_RS04935 PF00293 NUDIX domain YYK_RS04960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YYK_RS04960 PF03483 B3/4 domain YYK_RS04960 PF03484 tRNA synthetase B5 domain YYK_RS04960 PF01588 Putative tRNA binding domain YYK_RS04960 PF03147 Ferredoxin-fold anticodon binding domain YYK_RS04965 PF13673 Acetyltransferase (GNAT) domain YYK_RS04970 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YYK_RS04970 PF01409 tRNA synthetases class II core domain (F) YYK_RS04975 PF00933 Glycosyl hydrolase family 3 N terminal domain YYK_RS04980 PF00933 Glycosyl hydrolase family 3 N terminal domain YYK_RS04990 PF00106 short chain dehydrogenase YYK_RS04995 PF03786 D-mannonate dehydratase (UxuA) YYK_RS05000 PF02614 Glucuronate isomerase YYK_RS05005 PF01081 KDPG and KHG aldolase YYK_RS05010 PF07729 FCD domain YYK_RS05010 PF00392 Bacterial regulatory proteins, gntR family YYK_RS05015 PF00703 Glycosyl hydrolases family 2 YYK_RS05015 PF02836 Glycosyl hydrolases family 2, TIM barrel domain YYK_RS05015 PF02837 Glycosyl hydrolases family 2, sugar binding domain YYK_RS05020 PF00294 pfkB family carbohydrate kinase YYK_RS05030 PF01223 DNA/RNA non-specific endonuclease YYK_RS05035 PF11772 DNA-directed RNA polymerase subunit beta YYK_RS05040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YYK_RS05050 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain YYK_RS05050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YYK_RS05055 PF02874 ATP synthase alpha/beta family, beta-barrel domain YYK_RS05055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYK_RS05060 PF00231 ATP synthase YYK_RS05065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YYK_RS05065 PF00306 ATP synthase alpha/beta chain, C terminal domain YYK_RS05065 PF02874 ATP synthase alpha/beta family, beta-barrel domain YYK_RS05070 PF00213 ATP synthase delta (OSCP) subunit YYK_RS05075 PF00430 ATP synthase B/B' CF(0) YYK_RS05080 PF00119 ATP synthase A chain YYK_RS05085 PF00137 ATP synthase subunit C YYK_RS05090 PF00781 Diacylglycerol kinase catalytic domain YYK_RS05095 PF00533 BRCA1 C Terminus (BRCT) domain YYK_RS05095 PF12826 Helix-hairpin-helix motif YYK_RS05095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YYK_RS05095 PF03120 NAD-dependent DNA ligase OB-fold domain YYK_RS05095 PF01653 NAD-dependent DNA ligase adenylation domain YYK_RS05100 PF03773 Predicted permease YYK_RS05105 PF09323 Domain of unknown function (DUF1980) YYK_RS05110 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain YYK_RS05110 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain YYK_RS05125 PF02881 SRP54-type protein, helical bundle domain YYK_RS05125 PF00448 SRP54-type protein, GTPase domain YYK_RS05140 PF06470 SMC proteins Flexible Hinge Domain YYK_RS05140 PF02463 RecF/RecN/SMC N terminal domain YYK_RS05145 PF00035 Double-stranded RNA binding motif YYK_RS05145 PF14622 Ribonuclease-III-like YYK_RS05165 PF00665 Integrase core domain YYK_RS05165 PF13936 Helix-turn-helix domain YYK_RS05170 PF08903 Domain of unknown function (DUF1846) YYK_RS05175 PF02896 PEP-utilising enzyme, TIM barrel domain YYK_RS05175 PF05524 PEP-utilising enzyme, N-terminal YYK_RS05175 PF00391 PEP-utilising enzyme, mobile domain YYK_RS05180 PF00381 PTS HPr component phosphorylation site YYK_RS05185 PF00180 Isocitrate/isopropylmalate dehydrogenase YYK_RS05190 PF00285 Citrate synthase, C-terminal domain YYK_RS05195 PF00330 Aconitase family (aconitate hydratase) YYK_RS05195 PF00694 Aconitase C-terminal domain YYK_RS05200 PF00462 Glutaredoxin YYK_RS05205 PF00317 Ribonucleotide reductase, all-alpha domain YYK_RS05205 PF02867 Ribonucleotide reductase, barrel domain YYK_RS05205 PF08343 Ribonucleotide reductase N-terminal YYK_RS05215 PF00268 Ribonucleotide reductase, small chain YYK_RS05220 PF00356 Bacterial regulatory proteins, lacI family YYK_RS05235 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain YYK_RS05235 PF02278 Polysaccharide lyase family 8, super-sandwich domain YYK_RS05235 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain YYK_RS05245 PF03613 PTS system mannose/fructose/sorbose family IID component YYK_RS05255 PF03830 PTS system sorbose subfamily IIB component YYK_RS05260 PF07470 Glycosyl Hydrolase Family 88 YYK_RS05320 PF01381 Helix-turn-helix YYK_RS05345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YYK_RS05345 PF02272 DHHA1 domain YYK_RS05345 PF01411 tRNA synthetases class II (A) YYK_RS05355 PF13145 PPIC-type PPIASE domain YYK_RS05360 PF01596 O-methyltransferase YYK_RS05375 PF01432 Peptidase family M3 YYK_RS05375 PF08439 Oligopeptidase F YYK_RS05385 PF01588 Putative tRNA binding domain YYK_RS05385 PF09334 tRNA synthetases class I (M) YYK_RS05395 PF00793 DAHP synthetase I family YYK_RS05400 PF00793 DAHP synthetase I family YYK_RS05405 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YYK_RS05405 PF08501 Shikimate dehydrogenase substrate binding domain YYK_RS05410 PF01761 3-dehydroquinate synthase YYK_RS05415 PF00005 ABC transporter YYK_RS05420 PF02653 Branched-chain amino acid transport system / permease component YYK_RS05440 PF01791 DeoC/LacD family aldolase YYK_RS05445 PF01979 Amidohydrolase family YYK_RS05450 PF06133 Control of competence regulator ComK, YlbF/YmcA YYK_RS05455 PF02153 Prephenate dehydrogenase YYK_RS05460 PF01264 Chorismate synthase YYK_RS05465 PF01487 Type I 3-dehydroquinase YYK_RS05470 PF10672 S-adenosylmethionine-dependent methyltransferase YYK_RS05470 PF17785 PUA-like domain YYK_RS05475 PF00884 Sulfatase YYK_RS05485 PF00453 Ribosomal protein L20 YYK_RS05490 PF01632 Ribosomal protein L35 YYK_RS05495 PF05198 Translation initiation factor IF-3, N-terminal domain YYK_RS05495 PF00707 Translation initiation factor IF-3, C-terminal domain YYK_RS05500 PF02224 Cytidylate kinase YYK_RS05530 PF00535 Glycosyl transferase family 2 YYK_RS05545 PF00535 Glycosyl transferase family 2 YYK_RS05545 PF01501 Glycosyl transferase family 8 YYK_RS05550 PF01501 Glycosyl transferase family 8 YYK_RS05570 PF14524 Wzt C-terminal domain YYK_RS05570 PF00005 ABC transporter YYK_RS05580 PF00535 Glycosyl transferase family 2 YYK_RS05600 PF05036 Sporulation related domain YYK_RS05600 PF01520 N-acetylmuramoyl-L-alanine amidase YYK_RS05610 PF04321 RmlD substrate binding domain YYK_RS05615 PF16363 GDP-mannose 4,6 dehydratase YYK_RS05625 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase YYK_RS05630 PF00483 Nucleotidyl transferase YYK_RS05635 PF02535 ZIP Zinc transporter YYK_RS05645 PF04816 tRNA (adenine(22)-N(1))-methyltransferase YYK_RS05655 PF04204 Homoserine O-succinyltransferase YYK_RS05660 PF00156 Phosphoribosyl transferase domain YYK_RS05675 PF17768 RecJ OB domain YYK_RS05675 PF01368 DHH family YYK_RS05675 PF02272 DHHA1 domain YYK_RS05675 PF10141 Single-strand DNA-specific exonuclease, C terminal domain YYK_RS05680 PF13091 PLD-like domain YYK_RS05690 PF00106 short chain dehydrogenase YYK_RS05695 PF12706 Beta-lactamase superfamily domain YYK_RS05695 PF00753 Metallo-beta-lactamase superfamily YYK_RS05705 PF13167 GTP-binding GTPase N-terminal YYK_RS05705 PF16360 GTP-binding GTPase Middle Region YYK_RS05705 PF01926 50S ribosome-binding GTPase YYK_RS05720 PF07690 Major Facilitator Superfamily YYK_RS05725 PF01717 Cobalamin-independent synthase, Catalytic domain YYK_RS05730 PF02562 PhoH-like protein YYK_RS05735 PF06855 YozE SAM-like fold YYK_RS05745 PF02558 Ketopantoate reductase PanE/ApbA YYK_RS05745 PF08546 Ketopantoate reductase PanE/ApbA C terminal YYK_RS05750 PF17783 CvfB-like winged helix domain YYK_RS05750 PF13509 S1 domain YYK_RS05755 PF01765 Ribosome recycling factor YYK_RS05760 PF00696 Amino acid kinase family YYK_RS05765 PF14667 Polysaccharide biosynthesis C-terminal domain YYK_RS05765 PF01943 Polysaccharide biosynthesis protein YYK_RS05770 PF02798 Glutathione S-transferase, N-terminal domain YYK_RS05780 PF00687 Ribosomal protein L1p/L10e family YYK_RS05785 PF03946 Ribosomal protein L11, N-terminal domain YYK_RS05785 PF00298 Ribosomal protein L11, RNA binding domain YYK_RS05795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YYK_RS05800 PF09397 Ftsk gamma domain YYK_RS05800 PF01580 FtsK/SpoIIIE family YYK_RS05800 PF17854 FtsK alpha domain YYK_RS05805 PF08244 Glycosyl hydrolases family 32 C terminal YYK_RS05805 PF00251 Glycosyl hydrolases family 32 N-terminal domain YYK_RS05815 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS05820 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS05825 PF00356 Bacterial regulatory proteins, lacI family YYK_RS05845 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YYK_RS05850 PF13683 Integrase core domain YYK_RS05850 PF01610 Transposase YYK_RS05855 PF00009 Elongation factor Tu GTP binding domain YYK_RS05855 PF16658 Class II release factor RF3, C-terminal domain YYK_RS05855 PF03144 Elongation factor Tu domain 2 YYK_RS05870 PF01225 Mur ligase family, catalytic domain YYK_RS05870 PF02875 Mur ligase family, glutamate ligase domain YYK_RS05870 PF08245 Mur ligase middle domain YYK_RS05880 PF07478 D-ala D-ala ligase C-terminus YYK_RS05880 PF01820 D-ala D-ala ligase N-terminus YYK_RS05885 PF02132 RecR protein YYK_RS05885 PF13662 Toprim domain YYK_RS05890 PF03717 Penicillin-binding Protein dimerisation domain YYK_RS05890 PF00905 Penicillin binding protein transpeptidase domain YYK_RS05895 PF00005 ABC transporter YYK_RS05900 PF12848 ABC transporter YYK_RS05900 PF00005 ABC transporter YYK_RS05910 PF00753 Metallo-beta-lactamase superfamily YYK_RS05915 PF00512 His Kinase A (phospho-acceptor) domain YYK_RS05915 PF00672 HAMP domain YYK_RS05915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS05915 PF13426 PAS domain YYK_RS05920 PF00072 Response regulator receiver domain YYK_RS05920 PF00486 Transcriptional regulatory protein, C terminal YYK_RS05925 PF00005 ABC transporter YYK_RS05930 PF00497 Bacterial extracellular solute-binding proteins, family 3 YYK_RS05935 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS05940 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS05945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYK_RS05945 PF02824 TGS domain YYK_RS05945 PF03129 Anticodon binding domain YYK_RS05945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YYK_RS05960 PF00534 Glycosyl transferases group 1 YYK_RS05960 PF13439 Glycosyltransferase Family 4 YYK_RS05965 PF13439 Glycosyltransferase Family 4 YYK_RS05965 PF00534 Glycosyl transferases group 1 YYK_RS05970 PF12892 Spy0128-like isopeptide containing domain YYK_RS05975 PF00356 Bacterial regulatory proteins, lacI family YYK_RS05980 PF00557 Metallopeptidase family M24 YYK_RS05980 PF01321 Creatinase/Prolidase N-terminal domain YYK_RS05985 PF01702 Queuine tRNA-ribosyltransferase YYK_RS05995 PF13380 CoA binding domain YYK_RS06005 PF01367 5'-3' exonuclease, C-terminal SAM fold YYK_RS06005 PF00476 DNA polymerase family A YYK_RS06005 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YYK_RS06020 PF00005 ABC transporter YYK_RS06030 PF08534 Redoxin YYK_RS06040 PF03577 Peptidase family C69 YYK_RS06045 PF03848 Tellurite resistance protein TehB YYK_RS06045 PF09313 Domain of unknown function (DUF1971) YYK_RS06050 PF08240 Alcohol dehydrogenase GroES-like domain YYK_RS06050 PF00107 Zinc-binding dehydrogenase YYK_RS06055 PF01668 SmpB protein YYK_RS06060 PF17876 Cold shock domain YYK_RS06060 PF00575 S1 RNA binding domain YYK_RS06060 PF08206 Ribonuclease B OB domain YYK_RS06060 PF00773 RNB domain YYK_RS06070 PF00471 Ribosomal protein L33 YYK_RS06075 PF07690 Major Facilitator Superfamily YYK_RS06075 PF00083 Sugar (and other) transporter YYK_RS06080 PF01121 Dephospho-CoA kinase YYK_RS06085 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YYK_RS06085 PF06827 Zinc finger found in FPG and IleRS YYK_RS06085 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YYK_RS06090 PF01926 50S ribosome-binding GTPase YYK_RS06090 PF07650 KH domain YYK_RS06095 PF01219 Prokaryotic diacylglycerol kinase YYK_RS06100 PF02130 Uncharacterized protein family UPF0054 YYK_RS06105 PF01418 Helix-turn-helix domain, rpiR family YYK_RS06105 PF01380 SIS domain YYK_RS06110 PF02378 Phosphotransferase system, EIIC YYK_RS06110 PF00367 phosphotransferase system, EIIB YYK_RS06110 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YYK_RS06115 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase YYK_RS06120 PF01289 Thiol-activated cytolysin YYK_RS06120 PF17440 Thiol-activated cytolysin beta sandwich domain YYK_RS06130 PF00664 ABC transporter transmembrane region YYK_RS06130 PF00005 ABC transporter YYK_RS06135 PF00005 ABC transporter YYK_RS06135 PF00664 ABC transporter transmembrane region YYK_RS06155 PF07670 Nucleoside recognition YYK_RS06155 PF02421 Ferrous iron transport protein B YYK_RS06155 PF17910 FeoB cytosolic helical domain YYK_RS06155 PF07664 Ferrous iron transport protein B C terminus YYK_RS06160 PF18075 FtsX extracellular domain YYK_RS06160 PF02687 FtsX-like permease family YYK_RS06165 PF00005 ABC transporter YYK_RS06170 PF03462 PCRF domain YYK_RS06170 PF00472 RF-1 domain YYK_RS06175 PF08331 Domain of unknown function (DUF1730) YYK_RS06180 PF04892 VanZ like family YYK_RS06195 PF00690 Cation transporter/ATPase, N-terminus YYK_RS06195 PF00689 Cation transporting ATPase, C-terminus YYK_RS06200 PF00665 Integrase core domain YYK_RS06200 PF13936 Helix-turn-helix domain YYK_RS06230 PF01883 Iron-sulfur cluster assembly protein YYK_RS06235 PF04545 Sigma-70, region 4 YYK_RS06235 PF04542 Sigma-70 region 2 YYK_RS06235 PF00140 Sigma-70 factor, region 1.2 YYK_RS06235 PF04539 Sigma-70 region 3 YYK_RS06235 PF03979 Sigma-70 factor, region 1.1 YYK_RS06240 PF08275 DNA primase catalytic core, N-terminal domain YYK_RS06240 PF10410 DnaB-helicase binding domain of primase YYK_RS06240 PF01807 CHC2 zinc finger YYK_RS06245 PF01741 Large-conductance mechanosensitive channel, MscL YYK_RS06250 PF16363 GDP-mannose 4,6 dehydratase YYK_RS06255 PF01165 Ribosomal protein S21 YYK_RS06265 PF13344 Haloacid dehalogenase-like hydrolase YYK_RS06270 PF00293 NUDIX domain YYK_RS06280 PF06969 HemN C-terminal domain YYK_RS06280 PF04055 Radical SAM superfamily YYK_RS06285 PF00343 Carbohydrate phosphorylase YYK_RS06290 PF01048 Phosphorylase superfamily YYK_RS06295 PF01048 Phosphorylase superfamily YYK_RS06305 PF01676 Metalloenzyme superfamily YYK_RS06310 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YYK_RS06315 PF01420 Type I restriction modification DNA specificity domain YYK_RS06320 PF01420 Type I restriction modification DNA specificity domain YYK_RS06325 PF12161 HsdM N-terminal domain YYK_RS06325 PF02384 N-6 DNA Methylase YYK_RS06330 PF08463 EcoEI R protein C-terminal YYK_RS06330 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) YYK_RS06330 PF04851 Type III restriction enzyme, res subunit YYK_RS06330 PF00271 Helicase conserved C-terminal domain YYK_RS06335 PF10396 GTP-binding protein TrmE N-terminus YYK_RS06335 PF12631 MnmE helical domain YYK_RS06335 PF01926 50S ribosome-binding GTPase YYK_RS06350 PF01145 SPFH domain / Band 7 family YYK_RS06350 PF15975 Flotillin YYK_RS06355 PF04011 LemA family YYK_RS06365 PF03167 Uracil DNA glycosylase superfamily YYK_RS06375 PF01546 Peptidase family M20/M25/M40 YYK_RS06380 PF00375 Sodium:dicarboxylate symporter family YYK_RS06400 PF08241 Methyltransferase domain YYK_RS06405 PF00005 ABC transporter YYK_RS06405 PF12848 ABC transporter YYK_RS06410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YYK_RS06410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YYK_RS06410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YYK_RS06410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YYK_RS06420 PF02457 DisA bacterial checkpoint controller nucleotide-binding YYK_RS06425 PF08353 Domain of unknown function (DUF1727) YYK_RS06425 PF08245 Mur ligase middle domain YYK_RS06430 PF07685 CobB/CobQ-like glutamine amidotransferase domain YYK_RS06445 PF13847 Methyltransferase domain YYK_RS06460 PF12848 ABC transporter YYK_RS06460 PF16326 ABC transporter C-terminal domain YYK_RS06460 PF00005 ABC transporter YYK_RS06475 PF00756 Putative esterase YYK_RS06480 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain YYK_RS06480 PF00753 Metallo-beta-lactamase superfamily YYK_RS06480 PF17770 Ribonuclease J C-terminal domain YYK_RS06495 PF08402 TOBE domain YYK_RS06495 PF00005 ABC transporter YYK_RS06510 PF00232 Glycosyl hydrolase family 1 YYK_RS06515 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YYK_RS06515 PF00367 phosphotransferase system, EIIB YYK_RS06515 PF02378 Phosphotransferase system, EIIC YYK_RS06520 PF00874 PRD domain YYK_RS06520 PF03123 CAT RNA binding domain YYK_RS06525 PF05670 NFACT protein RNA binding domain YYK_RS06530 PF03306 Alpha-acetolactate decarboxylase YYK_RS06540 PF01594 AI-2E family transporter YYK_RS06545 PF10282 Lactonase, 7-bladed beta-propeller YYK_RS06555 PF13419 Haloacid dehalogenase-like hydrolase YYK_RS06570 PF03952 Enolase, N-terminal domain YYK_RS06570 PF00113 Enolase, C-terminal TIM barrel domain YYK_RS06585 PF02595 Glycerate kinase family YYK_RS06590 PF13419 Haloacid dehalogenase-like hydrolase YYK_RS06605 PF06160 Septation ring formation regulator, EzrA YYK_RS06610 PF01751 Toprim domain YYK_RS06610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS06610 PF00986 DNA gyrase B subunit, carboxyl terminus YYK_RS06610 PF00204 DNA gyrase B YYK_RS06615 PF01965 DJ-1/PfpI family YYK_RS06620 PF01098 Cell cycle protein YYK_RS06625 PF01197 Ribosomal protein L31 YYK_RS06630 PF02424 ApbE family YYK_RS06635 PF02272 DHHA1 domain YYK_RS06635 PF01368 DHH family YYK_RS06640 PF00258 Flavodoxin YYK_RS06645 PF00253 Ribosomal protein S14p/S29e YYK_RS06650 PF01817 Chorismate mutase type II YYK_RS06650 PF02153 Prephenate dehydrogenase YYK_RS06655 PF00654 Voltage gated chloride channel YYK_RS06665 PF17936 Bacterial Ig domain YYK_RS06665 PF02872 5'-nucleotidase, C-terminal domain YYK_RS06665 PF00149 Calcineurin-like phosphoesterase YYK_RS06670 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YYK_RS06670 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YYK_RS06675 PF06144 DNA polymerase III, delta subunit YYK_RS06685 PF02677 Epoxyqueuosine reductase QueH YYK_RS06690 PF00005 ABC transporter YYK_RS06695 PF00005 ABC transporter YYK_RS06695 PF12399 Branched-chain amino acid ATP-binding cassette transporter YYK_RS06700 PF11862 Domain of unknown function (DUF3382) YYK_RS06700 PF02653 Branched-chain amino acid transport system / permease component YYK_RS06705 PF02653 Branched-chain amino acid transport system / permease component YYK_RS06710 PF13458 Periplasmic binding protein YYK_RS06715 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) YYK_RS06720 PF00574 Clp protease YYK_RS06730 PF16657 Maltogenic Amylase, C-terminal domain YYK_RS06730 PF00128 Alpha amylase, catalytic domain YYK_RS06735 PF00128 Alpha amylase, catalytic domain YYK_RS06740 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS06745 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS06750 PF01547 Bacterial extracellular solute-binding protein YYK_RS06755 PF16875 Glycosyl hydrolase family 36 N-terminal domain YYK_RS06755 PF16874 Glycosyl hydrolase family 36 C-terminal domain YYK_RS06760 PF12833 Helix-turn-helix domain YYK_RS06760 PF02311 AraC-like ligand binding domain YYK_RS06765 PF00155 Aminotransferase class I and II YYK_RS06770 PF01053 Cys/Met metabolism PLP-dependent enzyme YYK_RS06790 PF05175 Methyltransferase small domain YYK_RS06795 PF01541 GIY-YIG catalytic domain YYK_RS06805 PF02525 Flavodoxin-like fold YYK_RS06820 PF01022 Bacterial regulatory protein, arsR family YYK_RS06825 PF00270 DEAD/DEAH box helicase YYK_RS06825 PF00271 Helicase conserved C-terminal domain YYK_RS06830 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) YYK_RS06830 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 YYK_RS06835 PF08000 Bacterial PH domain YYK_RS06860 PF01048 Phosphorylase superfamily YYK_RS06870 PF00293 NUDIX domain YYK_RS06875 PF00132 Bacterial transferase hexapeptide (six repeats) YYK_RS06875 PF14602 Hexapeptide repeat of succinyl-transferase YYK_RS06875 PF12804 MobA-like NTP transferase domain YYK_RS06915 PF01797 Transposase IS200 like YYK_RS06920 PF02687 FtsX-like permease family YYK_RS06925 PF00005 ABC transporter YYK_RS06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS06935 PF00072 Response regulator receiver domain YYK_RS06935 PF00486 Transcriptional regulatory protein, C terminal YYK_RS06945 PF00155 Aminotransferase class I and II YYK_RS06955 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS06960 PF00571 CBS domain YYK_RS06960 PF00005 ABC transporter YYK_RS06980 PF01790 Prolipoprotein diacylglyceryl transferase YYK_RS06985 PF02603 HPr Serine kinase N terminus YYK_RS06985 PF07475 HPr Serine kinase C-terminal domain YYK_RS06990 PF01238 Phosphomannose isomerase type I YYK_RS07015 PF10263 SprT-like family YYK_RS07015 PF17283 SprT-like zinc ribbon domain YYK_RS07025 PF00248 Aldo/keto reductase family YYK_RS07030 PF06177 QueT transporter YYK_RS07035 PF04138 GtrA-like protein YYK_RS07045 PF00557 Metallopeptidase family M24 YYK_RS07055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YYK_RS07060 PF02525 Flavodoxin-like fold YYK_RS07065 PF00438 S-adenosylmethionine synthetase, N-terminal domain YYK_RS07065 PF02772 S-adenosylmethionine synthetase, central domain YYK_RS07065 PF02773 S-adenosylmethionine synthetase, C-terminal domain YYK_RS07070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YYK_RS07080 PF05343 M42 glutamyl aminopeptidase YYK_RS07095 PF12169 DNA polymerase III subunits gamma and tau domain III YYK_RS07100 PF13185 GAF domain YYK_RS07110 PF10400 Virulence activator alpha C-term YYK_RS07110 PF03551 Transcriptional regulator PadR-like family YYK_RS07115 PF00485 Phosphoribulokinase / Uridine kinase family YYK_RS07125 PF00271 Helicase conserved C-terminal domain YYK_RS07125 PF00270 DEAD/DEAH box helicase YYK_RS07130 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain YYK_RS07130 PF01522 Polysaccharide deacetylase YYK_RS07140 PF01797 Transposase IS200 like YYK_RS07145 PF00300 Histidine phosphatase superfamily (branch 1) YYK_RS07150 PF00108 Thiolase, N-terminal domain YYK_RS07150 PF02803 Thiolase, C-terminal domain YYK_RS07155 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal YYK_RS07155 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal YYK_RS07160 PF00368 Hydroxymethylglutaryl-coenzyme A reductase YYK_RS07185 PF00216 Bacterial DNA-binding protein YYK_RS07195 PF13472 GDSL-like Lipase/Acylhydrolase family YYK_RS07200 PF02645 Uncharacterised protein, DegV family COG1307 YYK_RS07205 PF13476 AAA domain YYK_RS07210 PF02863 Arginine repressor, C-terminal domain YYK_RS07210 PF01316 Arginine repressor, DNA binding domain YYK_RS07215 PF01479 S4 domain YYK_RS07215 PF01728 FtsJ-like methyltransferase YYK_RS07220 PF00348 Polyprenyl synthetase YYK_RS07225 PF02609 Exonuclease VII small subunit YYK_RS07230 PF13742 OB-fold nucleic acid binding domain YYK_RS07230 PF02601 Exonuclease VII, large subunit YYK_RS07235 PF04228 Putative neutral zinc metallopeptidase YYK_RS07240 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family YYK_RS07245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS07245 PF00672 HAMP domain YYK_RS07245 PF00512 His Kinase A (phospho-acceptor) domain YYK_RS07250 PF00072 Response regulator receiver domain YYK_RS07250 PF00486 Transcriptional regulatory protein, C terminal YYK_RS07275 PF01368 DHH family YYK_RS07275 PF02833 DHHA2 domain YYK_RS07285 PF04055 Radical SAM superfamily YYK_RS07290 PF00571 CBS domain YYK_RS07290 PF03471 Transporter associated domain YYK_RS07290 PF01595 Cyclin M transmembrane N-terminal domain YYK_RS07295 PF00005 ABC transporter YYK_RS07300 PF06962 Putative rRNA methylase YYK_RS07310 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YYK_RS07310 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain YYK_RS07310 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YYK_RS07315 PF02540 NAD synthase YYK_RS07325 PF04055 Radical SAM superfamily YYK_RS07330 PF06265 Protein of unknown function (DUF1027) YYK_RS07335 PF13180 PDZ domain YYK_RS07335 PF05362 Lon protease (S16) C-terminal proteolytic domain YYK_RS07340 PF01467 Cytidylyltransferase-like YYK_RS07355 PF00581 Rhodanese-like domain YYK_RS07360 PF06014 Bacterial protein of unknown function (DUF910) YYK_RS07365 PF00196 Bacterial regulatory proteins, luxR family YYK_RS07365 PF00072 Response regulator receiver domain YYK_RS07370 PF13185 GAF domain YYK_RS07370 PF07730 Histidine kinase YYK_RS07380 PF00005 ABC transporter YYK_RS07385 PF00210 Ferritin-like domain YYK_RS07390 PF05532 CsbD-like YYK_RS07395 PF01451 Low molecular weight phosphotyrosine protein phosphatase YYK_RS07405 PF01757 Acyltransferase family YYK_RS07410 PF01569 PAP2 superfamily YYK_RS07415 PF12822 ECF transporter, substrate-specific component YYK_RS07420 PF00588 SpoU rRNA Methylase family YYK_RS07430 PF01809 Putative membrane protein insertion efficiency factor YYK_RS07435 PF00849 RNA pseudouridylate synthase YYK_RS07435 PF01479 S4 domain YYK_RS07440 PF04079 Segregation and condensation complex subunit ScpB YYK_RS07445 PF02616 Segregation and condensation protein ScpA YYK_RS07450 PF00589 Phage integrase family YYK_RS07465 PF01725 Ham1 family YYK_RS07470 PF01177 Asp/Glu/Hydantoin racemase YYK_RS07475 PF03672 Uncharacterised protein family (UPF0154) YYK_RS07480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YYK_RS07480 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YYK_RS07485 PF03051 Peptidase C1-like family YYK_RS07490 PF01027 Inhibitor of apoptosis-promoting Bax1 YYK_RS07500 PF00588 SpoU rRNA Methylase family YYK_RS07500 PF08032 RNA 2'-O ribose methyltransferase substrate binding YYK_RS07505 PF00708 Acylphosphatase YYK_RS07510 PF02096 60Kd inner membrane protein YYK_RS07515 PF03449 Transcription elongation factor, N-terminal YYK_RS07515 PF01272 Transcription elongation factor, GreA/GreB, C-term YYK_RS07520 PF02618 YceG-like family YYK_RS07530 PF02875 Mur ligase family, glutamate ligase domain YYK_RS07530 PF01225 Mur ligase family, catalytic domain YYK_RS07530 PF08245 Mur ligase middle domain YYK_RS07540 PF00271 Helicase conserved C-terminal domain YYK_RS07540 PF04434 SWIM zinc finger YYK_RS07540 PF00176 SNF2 family N-terminal domain YYK_RS07555 PF01926 50S ribosome-binding GTPase YYK_RS07555 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YYK_RS07560 PF00881 Nitroreductase family YYK_RS07565 PF07319 Primosomal protein DnaI N-terminus YYK_RS07565 PF01695 IstB-like ATP binding protein YYK_RS07575 PF03477 ATP cone domain YYK_RS07580 PF01594 AI-2E family transporter YYK_RS07585 PF00072 Response regulator receiver domain YYK_RS07585 PF00486 Transcriptional regulatory protein, C terminal YYK_RS07590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YYK_RS07590 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain YYK_RS07600 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS07610 PF00270 DEAD/DEAH box helicase YYK_RS07610 PF00271 Helicase conserved C-terminal domain YYK_RS07620 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YYK_RS07620 PF00953 Glycosyl transferase family 4 YYK_RS07625 PF03717 Penicillin-binding Protein dimerisation domain YYK_RS07625 PF03793 PASTA domain YYK_RS07625 PF00905 Penicillin binding protein transpeptidase domain YYK_RS07635 PF01795 MraW methylase family YYK_RS07680 PF02424 ApbE family YYK_RS07685 PF04205 FMN-binding domain YYK_RS07695 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS07710 PF02386 Cation transport protein YYK_RS07715 PF02254 TrkA-N domain YYK_RS07715 PF02080 TrkA-C domain YYK_RS07720 PF01554 MatE YYK_RS07730 PF05979 Bacterial protein of unknown function (DUF896) YYK_RS07735 PF02092 Glycyl-tRNA synthetase beta subunit YYK_RS07740 PF02091 Glycyl-tRNA synthetase alpha subunit YYK_RS07755 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS07760 PF09383 NIL domain YYK_RS07760 PF00005 ABC transporter YYK_RS07765 PF01546 Peptidase family M20/M25/M40 YYK_RS07765 PF07687 Peptidase dimerisation domain YYK_RS07770 PF03180 NLPA lipoprotein YYK_RS07775 PF07722 Peptidase C26 YYK_RS07780 PF01717 Cobalamin-independent synthase, Catalytic domain YYK_RS07780 PF08267 Cobalamin-independent synthase, N-terminal domain YYK_RS07785 PF02219 Methylenetetrahydrofolate reductase YYK_RS07790 PF00860 Permease family YYK_RS07800 PF03830 PTS system sorbose subfamily IIB component YYK_RS07800 PF03610 PTS system fructose IIA component YYK_RS07805 PF03609 PTS system sorbose-specific iic component YYK_RS07810 PF03613 PTS system mannose/fructose/sorbose family IID component YYK_RS07820 PF02403 Seryl-tRNA synthetase N-terminal domain YYK_RS07820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYK_RS07825 PF02384 N-6 DNA Methylase YYK_RS07825 PF12161 HsdM N-terminal domain YYK_RS07835 PF18766 SWI2/SNF2 ATPase YYK_RS07835 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) YYK_RS07835 PF12008 Type I restriction and modification enzyme - subunit R C terminal YYK_RS07870 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YYK_RS07875 PF01039 Carboxyl transferase domain YYK_RS07880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YYK_RS07880 PF02785 Biotin carboxylase C-terminal domain YYK_RS07880 PF00289 Biotin carboxylase, N-terminal domain YYK_RS07885 PF07977 FabA-like domain YYK_RS07890 PF00364 Biotin-requiring enzyme YYK_RS07895 PF02801 Beta-ketoacyl synthase, C-terminal domain YYK_RS07895 PF00109 Beta-ketoacyl synthase, N-terminal domain YYK_RS07905 PF00698 Acyl transferase domain YYK_RS07910 PF03060 Nitronate monooxygenase YYK_RS07915 PF00550 Phosphopantetheine attachment site YYK_RS07920 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YYK_RS07920 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YYK_RS07930 PF00378 Enoyl-CoA hydratase/isomerase YYK_RS07935 PF13419 Haloacid dehalogenase-like hydrolase YYK_RS07940 PF00696 Amino acid kinase family YYK_RS07940 PF13840 ACT domain YYK_RS07950 PF01168 Alanine racemase, N-terminal domain YYK_RS07950 PF00842 Alanine racemase, C-terminal domain YYK_RS07955 PF01648 4'-phosphopantetheinyl transferase superfamily YYK_RS07960 PF01043 SecA preprotein cross-linking domain YYK_RS07960 PF07516 SecA Wing and Scaffold domain YYK_RS07960 PF07517 SecA DEAD-like domain YYK_RS07960 PF02810 SEC-C motif YYK_RS07970 PF00480 ROK family YYK_RS07975 PF02378 Phosphotransferase system, EIIC YYK_RS07975 PF00367 phosphotransferase system, EIIB YYK_RS07975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 YYK_RS07980 PF08244 Glycosyl hydrolases family 32 C terminal YYK_RS07980 PF00251 Glycosyl hydrolases family 32 N-terminal domain YYK_RS07985 PF00356 Bacterial regulatory proteins, lacI family YYK_RS07990 PF01029 NusB family YYK_RS07995 PF03780 Asp23 family, cell envelope-related function YYK_RS08000 PF01132 Elongation factor P (EF-P) OB domain YYK_RS08000 PF08207 Elongation factor P (EF-P) KOW-like domain YYK_RS08000 PF09285 Elongation factor P, C-terminal YYK_RS08005 PF01321 Creatinase/Prolidase N-terminal domain YYK_RS08005 PF00557 Metallopeptidase family M24 YYK_RS08010 PF00005 ABC transporter YYK_RS08010 PF17760 UvrA interaction domain YYK_RS08010 PF17755 UvrA DNA-binding domain YYK_RS08030 PF01084 Ribosomal protein S18 YYK_RS08035 PF00436 Single-strand binding protein family YYK_RS08040 PF01250 Ribosomal protein S6 YYK_RS08045 PF00665 Integrase core domain YYK_RS08045 PF13936 Helix-turn-helix domain YYK_RS08050 PF10437 Bacterial lipoate protein ligase C-terminus YYK_RS08050 PF03099 Biotin/lipoate A/B protein ligase family YYK_RS08060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YYK_RS08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS08065 PF02817 e3 binding domain YYK_RS08065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YYK_RS08065 PF00364 Biotin-requiring enzyme YYK_RS08070 PF00364 Biotin-requiring enzyme YYK_RS08070 PF02780 Transketolase, C-terminal domain YYK_RS08070 PF02779 Transketolase, pyrimidine binding domain YYK_RS08075 PF00676 Dehydrogenase E1 component YYK_RS08080 PF03458 UPF0126 domain YYK_RS08085 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 YYK_RS08095 PF02033 Ribosome-binding factor A YYK_RS08100 PF11987 Translation-initiation factor 2 YYK_RS08100 PF00009 Elongation factor Tu GTP binding domain YYK_RS08100 PF04760 Translation initiation factor IF-2, N-terminal region YYK_RS08105 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family YYK_RS08110 PF04296 Protein of unknown function (DUF448) YYK_RS08115 PF00575 S1 RNA binding domain YYK_RS08115 PF13184 NusA-like KH domain YYK_RS08115 PF08529 NusA N-terminal domain YYK_RS08120 PF17384 RimP C-terminal SH3 domain YYK_RS08120 PF02576 RimP N-terminal domain YYK_RS08125 PF02390 Putative methyltransferase YYK_RS08135 PF05975 Bacterial ABC transporter protein EcsB YYK_RS08140 PF00005 ABC transporter YYK_RS08145 PF01230 HIT domain YYK_RS08155 PF03816 Cell envelope-related transcriptional attenuator domain YYK_RS08165 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YYK_RS08170 PF13684 Dihydroxyacetone kinase family YYK_RS08170 PF02734 DAK2 domain YYK_RS08175 PF03780 Asp23 family, cell envelope-related function YYK_RS08185 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS08195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YYK_RS08195 PF00005 ABC transporter YYK_RS08200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YYK_RS08200 PF00005 ABC transporter YYK_RS08205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YYK_RS08210 PF00768 D-alanyl-D-alanine carboxypeptidase YYK_RS08210 PF07943 Penicillin-binding protein 5, C-terminal domain YYK_RS08215 PF01458 Uncharacterized protein family (UPF0051) YYK_RS08220 PF01592 NifU-like N terminal domain YYK_RS08225 PF00266 Aminotransferase class-V YYK_RS08230 PF01458 Uncharacterized protein family (UPF0051) YYK_RS08235 PF00005 ABC transporter YYK_RS08240 PF00953 Glycosyl transferase family 4 YYK_RS08245 PF05389 Negative regulator of genetic competence (MecA) YYK_RS08250 PF02673 Bacitracin resistance protein BacA YYK_RS08255 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS08260 PF00005 ABC transporter YYK_RS08275 PF00291 Pyridoxal-phosphate dependent enzyme YYK_RS08275 PF00585 C-terminal regulatory domain of Threonine dehydratase YYK_RS08280 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YYK_RS08280 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YYK_RS08285 PF01842 ACT domain YYK_RS08285 PF10369 Small subunit of acetolactate synthase YYK_RS08290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YYK_RS08290 PF00205 Thiamine pyrophosphate enzyme, central domain YYK_RS08290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YYK_RS08310 PF00920 Dehydratase family YYK_RS08320 PF01883 Iron-sulfur cluster assembly protein YYK_RS08335 PF00380 Ribosomal protein S9/S16 YYK_RS08340 PF00572 Ribosomal protein L13 YYK_RS08345 PF02645 Uncharacterised protein, DegV family COG1307 YYK_RS08355 PF08032 RNA 2'-O ribose methyltransferase substrate binding YYK_RS08355 PF00588 SpoU rRNA Methylase family YYK_RS08380 PF00005 ABC transporter YYK_RS08380 PF17912 MalK OB fold domain YYK_RS08380 PF03459 TOBE domain YYK_RS08385 PF13556 PucR C-terminal helix-turn-helix domain YYK_RS08390 PF00072 Response regulator receiver domain YYK_RS08390 PF12833 Helix-turn-helix domain YYK_RS08395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YYK_RS08395 PF06580 Histidine kinase YYK_RS08395 PF02743 Cache domain YYK_RS08395 PF00672 HAMP domain YYK_RS08410 PF12010 Domain of unknown function (DUF3502) YYK_RS08415 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS08420 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS08430 PF00480 ROK family YYK_RS08435 PF01074 Glycosyl hydrolases family 38 N-terminal domain YYK_RS08435 PF07748 Glycosyl hydrolases family 38 C-terminal domain YYK_RS08435 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 YYK_RS08435 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain YYK_RS08435 PF09261 Alpha mannosidase middle domain YYK_RS08455 PF00636 Ribonuclease III domain YYK_RS08460 PF01406 tRNA synthetases class I (C) catalytic domain YYK_RS08460 PF09190 DALR domain YYK_RS08475 PF00132 Bacterial transferase hexapeptide (six repeats) YYK_RS08480 PF00575 S1 RNA binding domain YYK_RS08480 PF03725 3' exoribonuclease family, domain 2 YYK_RS08480 PF00013 KH domain YYK_RS08480 PF01138 3' exoribonuclease family, domain 1 YYK_RS08480 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YYK_RS08500 PF02378 Phosphotransferase system, EIIC YYK_RS08500 PF00367 phosphotransferase system, EIIB YYK_RS08505 PF13580 SIS domain YYK_RS08510 PF01418 Helix-turn-helix domain, rpiR family YYK_RS08510 PF01380 SIS domain YYK_RS08515 PF00312 Ribosomal protein S15 YYK_RS08520 PF00860 Permease family YYK_RS08535 PF00849 RNA pseudouridylate synthase YYK_RS08535 PF01479 S4 domain YYK_RS08555 PF01327 Polypeptide deformylase YYK_RS08565 PF00694 Aconitase C-terminal domain YYK_RS08570 PF00330 Aconitase family (aconitate hydratase) YYK_RS08575 PF00180 Isocitrate/isopropylmalate dehydrogenase YYK_RS08580 PF08502 LeuA allosteric (dimerisation) domain YYK_RS08580 PF00682 HMGL-like YYK_RS08590 PF02073 Thermophilic metalloprotease (M29) YYK_RS08605 PF11490 DNA polymerase III polC-type N-terminus II YYK_RS08605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YYK_RS08605 PF02811 PHP domain YYK_RS08605 PF00929 Exonuclease YYK_RS08605 PF07733 Bacterial DNA polymerase III alpha NTPase domain YYK_RS08605 PF14480 DNA polymerase III polC-type N-terminus I YYK_RS08610 PF02733 Dak1 domain YYK_RS08620 PF02733 Dak1 domain YYK_RS08625 PF02734 DAK2 domain YYK_RS08630 PF03610 PTS system fructose IIA component YYK_RS08635 PF00230 Major intrinsic protein YYK_RS08640 PF03129 Anticodon binding domain YYK_RS08640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YYK_RS08640 PF04073 Aminoacyl-tRNA editing domain YYK_RS08645 PF02163 Peptidase family M50 YYK_RS08645 PF13180 PDZ domain YYK_RS08655 PF01255 Putative undecaprenyl diphosphate synthase YYK_RS08660 PF02699 Preprotein translocase subunit YYK_RS08665 PF00709 Adenylosuccinate synthetase YYK_RS08670 PF04262 Glutamate-cysteine ligase YYK_RS08670 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YYK_RS08670 PF18419 ATP-grasp-like domain YYK_RS08680 PF01430 Hsp33 protein YYK_RS08685 PF01207 Dihydrouridine synthase (Dus) YYK_RS08695 PF04973 Nicotinamide mononucleotide transporter YYK_RS08700 PF01467 Cytidylyltransferase-like YYK_RS08705 PF00004 ATPase family associated with various cellular activities (AAA) YYK_RS08705 PF07724 AAA domain (Cdc48 subfamily) YYK_RS08705 PF17871 AAA lid domain YYK_RS08705 PF02861 Clp amino terminal domain, pathogenicity island component YYK_RS08705 PF10431 C-terminal, D2-small domain, of ClpB protein YYK_RS08710 PF17727 CtsR C-terminal dimerization domain YYK_RS08710 PF05848 CtsR N-terminal HTH domain YYK_RS08725 PF00889 Elongation factor TS YYK_RS08730 PF00318 Ribosomal protein S2 YYK_RS08745 PF00746 LPXTG cell wall anchor motif YYK_RS08745 PF06280 Fn3-like domain YYK_RS08745 PF02225 PA domain YYK_RS08745 PF00082 Subtilase family YYK_RS08750 PF00467 KOW motif YYK_RS08750 PF02357 Transcription termination factor nusG YYK_RS08760 PF00471 Ribosomal protein L33 YYK_RS08765 PF00912 Transglycosylase YYK_RS08765 PF00905 Penicillin binding protein transpeptidase domain YYK_RS08770 PF07992 Pyridine nucleotide-disulphide oxidoreductase YYK_RS08775 PF00849 RNA pseudouridylate synthase YYK_RS08775 PF01479 S4 domain YYK_RS08780 PF09182 Bacterial purine repressor, N-terminal YYK_RS08780 PF00156 Phosphoribosyl transferase domain YYK_RS08795 PF02646 RmuC family YYK_RS08800 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain YYK_RS08800 PF04263 Thiamin pyrophosphokinase, catalytic domain YYK_RS08805 PF00834 Ribulose-phosphate 3 epimerase family YYK_RS08810 PF03193 RsgA GTPase YYK_RS08810 PF16745 RsgA N-terminal domain YYK_RS08820 PF00664 ABC transporter transmembrane region YYK_RS08820 PF00005 ABC transporter YYK_RS08820 PF03412 Peptidase C39 family YYK_RS08850 PF00398 Ribosomal RNA adenine dimethylase YYK_RS08860 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system YYK_RS08870 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain YYK_RS08870 PF09297 NADH pyrophosphatase zinc ribbon domain YYK_RS08870 PF00293 NUDIX domain YYK_RS08890 PF13331 Domain of unknown function (DUF4093) YYK_RS08895 PF01026 TatD related DNase YYK_RS08900 PF00468 Ribosomal protein L34 YYK_RS08905 PF01424 R3H domain YYK_RS08905 PF14804 Jag N-terminus YYK_RS08910 PF02096 60Kd inner membrane protein YYK_RS08915 PF00825 Ribonuclease P YYK_RS08920 PF00206 Lyase YYK_RS08920 PF14698 Argininosuccinate lyase C-terminal YYK_RS08925 PF00764 Arginosuccinate synthase YYK_RS08935 PF08279 HTH domain YYK_RS08935 PF02829 3H domain YYK_RS08950 PF02574 Homocysteine S-methyltransferase YYK_RS08955 PF00324 Amino acid permease YYK_RS08960 PF00749 tRNA synthetases class I (E and Q), catalytic domain YYK_RS08980 PF01987 Mitochondrial biogenesis AIM24 YYK_RS08985 PF00484 Carbonic anhydrase YYK_RS08990 PF18073 Rubredoxin metal binding domain YYK_RS09000 PF00692 dUTPase YYK_RS09005 PF00664 ABC transporter transmembrane region YYK_RS09005 PF00005 ABC transporter YYK_RS09010 PF00664 ABC transporter transmembrane region YYK_RS09010 PF00005 ABC transporter YYK_RS09020 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YYK_RS09020 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YYK_RS09025 PF00483 Nucleotidyl transferase YYK_RS09030 PF01694 Rhomboid family YYK_RS09035 PF01812 5-formyltetrahydrofolate cyclo-ligase family YYK_RS09040 PF01546 Peptidase family M20/M25/M40 YYK_RS09040 PF07687 Peptidase dimerisation domain YYK_RS09045 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal YYK_RS09045 PF00132 Bacterial transferase hexapeptide (six repeats) YYK_RS09045 PF14602 Hexapeptide repeat of succinyl-transferase YYK_RS09060 PF00149 Calcineurin-like phosphoesterase YYK_RS09065 PF00342 Phosphoglucose isomerase YYK_RS09075 PF14437 MafB19-like deaminase YYK_RS09080 PF02779 Transketolase, pyrimidine binding domain YYK_RS09080 PF02780 Transketolase, C-terminal domain YYK_RS09080 PF00456 Transketolase, thiamine diphosphate binding domain YYK_RS09100 PF00596 Class II Aldolase and Adducin N-terminal domain YYK_RS09105 PF01261 Xylose isomerase-like TIM barrel YYK_RS09110 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YYK_RS09115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YYK_RS09120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YYK_RS09125 PF03611 PTS system sugar-specific permease component YYK_RS09130 PF17999 Pullulanase N1-terminal domain YYK_RS09130 PF00128 Alpha amylase, catalytic domain YYK_RS09130 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YYK_RS09135 PF00356 Bacterial regulatory proteins, lacI family YYK_RS09140 PF00005 ABC transporter YYK_RS09145 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS09150 PF00497 Bacterial extracellular solute-binding proteins, family 3 YYK_RS09155 PF05257 CHAP domain YYK_RS09155 PF01476 LysM domain YYK_RS09160 PF02378 Phosphotransferase system, EIIC YYK_RS09170 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit YYK_RS09175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit YYK_RS09180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YYK_RS09180 PF05043 Mga helix-turn-helix domain YYK_RS09180 PF08279 HTH domain YYK_RS09180 PF00874 PRD domain YYK_RS09190 PF00232 Glycosyl hydrolase family 1 YYK_RS09195 PF02056 Family 4 glycosyl hydrolase YYK_RS09195 PF11975 Family 4 glycosyl hydrolase C-terminal domain YYK_RS09200 PF08264 Anticodon-binding domain of tRNA YYK_RS09200 PF13603 Leucyl-tRNA synthetase, Domain 2 YYK_RS09200 PF09334 tRNA synthetases class I (M) YYK_RS09200 PF00133 tRNA synthetases class I (I, L, M and V) YYK_RS09205 PF05649 Peptidase family M13 YYK_RS09205 PF01431 Peptidase family M13 YYK_RS09210 PF00950 ABC 3 transport family YYK_RS09215 PF00950 ABC 3 transport family YYK_RS09220 PF00005 ABC transporter YYK_RS09230 PF01297 Zinc-uptake complex component A periplasmic YYK_RS09265 PF02580 D-Tyr-tRNA(Tyr) deacylase YYK_RS09270 PF13291 ACT domain YYK_RS09270 PF04607 Region found in RelA / SpoT proteins YYK_RS09270 PF02824 TGS domain YYK_RS09275 PF02872 5'-nucleotidase, C-terminal domain YYK_RS09275 PF00149 Calcineurin-like phosphoesterase YYK_RS09330 PF04452 RNA methyltransferase YYK_RS09355 PF16193 AAA C-terminal domain YYK_RS09355 PF05496 Holliday junction DNA helicase RuvB P-loop domain YYK_RS09355 PF12002 MgsA AAA+ ATPase C terminal YYK_RS09380 PF02872 5'-nucleotidase, C-terminal domain YYK_RS09380 PF00149 Calcineurin-like phosphoesterase YYK_RS09390 PF03477 ATP cone domain YYK_RS09390 PF13597 Anaerobic ribonucleoside-triphosphate reductase YYK_RS09410 PF04397 LytTr DNA-binding domain YYK_RS09415 PF01624 MutS domain I YYK_RS09415 PF05188 MutS domain II YYK_RS09415 PF00488 MutS domain V YYK_RS09415 PF05190 MutS family domain IV YYK_RS09415 PF05192 MutS domain III YYK_RS09420 PF01316 Arginine repressor, DNA binding domain YYK_RS09420 PF02863 Arginine repressor, C-terminal domain YYK_RS09425 PF03485 Arginyl tRNA synthetase N terminal domain YYK_RS09425 PF05746 DALR anticodon binding domain YYK_RS09425 PF00750 tRNA synthetases class I (R) YYK_RS09445 PF02446 4-alpha-glucanotransferase YYK_RS09450 PF13416 Bacterial extracellular solute-binding protein YYK_RS09455 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS09460 PF00528 Binding-protein-dependent transport system inner membrane component YYK_RS09470 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family YYK_RS09470 PF00356 Bacterial regulatory proteins, lacI family YYK_RS09475 PF17999 Pullulanase N1-terminal domain YYK_RS09475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) YYK_RS09475 PF00128 Alpha amylase, catalytic domain YYK_RS09480 PF07972 NrdI Flavodoxin like YYK_RS09485 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) YYK_RS09485 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 YYK_RS09490 PF01336 OB-fold nucleic acid binding domain YYK_RS09490 PF00152 tRNA synthetases class II (D, K and N) YYK_RS09490 PF02938 GAD domain YYK_RS09495 PF13673 Acetyltransferase (GNAT) domain YYK_RS09500 PF00248 Aldo/keto reductase family YYK_RS09505 PF00535 Glycosyl transferase family 2 YYK_RS09510 PF01915 Glycosyl hydrolase family 3 C-terminal domain YYK_RS09510 PF00933 Glycosyl hydrolase family 3 N terminal domain YYK_RS09510 PF14310 Fibronectin type III-like domain YYK_RS09520 PF01915 Glycosyl hydrolase family 3 C-terminal domain YYK_RS09520 PF00933 Glycosyl hydrolase family 3 N terminal domain YYK_RS09520 PF14310 Fibronectin type III-like domain YYK_RS09525 PF00072 Response regulator receiver domain YYK_RS09525 PF01339 CheB methylesterase YYK_RS09540 PF14537 Cytochrome c3 YYK_RS09540 PF00890 FAD binding domain YYK_RS09550 PF01479 S4 domain YYK_RS09550 PF00163 Ribosomal protein S4/S9 N-terminal domain YYK_RS09565 PF00772 DnaB-like helicase N terminal domain YYK_RS09565 PF03796 DnaB-like helicase C terminal domain YYK_RS09570 PF03948 Ribosomal protein L9, C-terminal domain YYK_RS09570 PF01281 Ribosomal protein L9, N-terminal domain YYK_RS09575 PF01368 DHH family YYK_RS09575 PF02272 DHHA1 domain YYK_RS09580 PF13932 GidA associated domain YYK_RS09580 PF01134 Glucose inhibited division protein A YYK_RS09590 PF00293 NUDIX domain YYK_RS09595 PF00293 NUDIX domain YYK_RS09600 PF01638 HxlR-like helix-turn-helix YYK_RS09615 PF03315 Serine dehydratase beta chain YYK_RS09615 PF01842 ACT domain YYK_RS09620 PF03313 Serine dehydratase alpha chain YYK_RS09630 PF02361 Cobalt transport protein YYK_RS09635 PF00005 ABC transporter YYK_RS09640 PF00005 ABC transporter YYK_RS09645 PF01066 CDP-alcohol phosphatidyltransferase YYK_RS09650 PF13464 Domain of unknown function (DUF4115) YYK_RS09655 PF00675 Insulinase (Peptidase family M16) YYK_RS09655 PF05193 Peptidase M16 inactive domain YYK_RS09660 PF05193 Peptidase M16 inactive domain YYK_RS09670 PF02463 RecF/RecN/SMC N terminal domain YYK_RS09675 PF00571 CBS domain YYK_RS09675 PF00478 IMP dehydrogenase / GMP reductase domain YYK_RS09680 PF00579 tRNA synthetases class I (W and Y) YYK_RS09685 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) YYK_RS09685 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 YYK_RS09690 PF12848 ABC transporter YYK_RS09690 PF00005 ABC transporter YYK_RS09720 PF02590 Predicted SPOUT methyltransferase YYK_RS09725 PF13180 PDZ domain YYK_RS09730 PF17762 HTH domain found in ParB protein YYK_RS09730 PF02195 ParB-like nuclease domain YYK_RS09740 PF00589 Phage integrase family YYK_RS09740 PF14659 Phage integrase, N-terminal SAM-like domain