NJAUSS_RS00005	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
NJAUSS_RS00010	SM00480	DNA polymerase III beta subunit
NJAUSS_RS00025	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS00040	SM00487	DEAD-like helicases superfamily
NJAUSS_RS00040	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS00040	SM00982	NJAUSS_RS00040
NJAUSS_RS00040	SM01058	CarD-like/TRCF domain
NJAUSS_RS00045	SM00363	S4 RNA-binding domain
NJAUSS_RS00065	SM00977	TilS substrate C-terminal domain
NJAUSS_RS00075	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00200	SM01400	NJAUSS_RS00200
NJAUSS_RS00230	SM01211	NJAUSS_RS00230
NJAUSS_RS00250	SM00798	AICARFT/IMPCHase bienzyme
NJAUSS_RS00250	SM00851	MGS-like domain
NJAUSS_RS00260	SM01001	AIR carboxylase
NJAUSS_RS00280	SM00998	Adenylosuccinate lyase C-terminus
NJAUSS_RS00300	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00310	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00315	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00330	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS00365	SM00853	MutL C terminal dimerisation domain
NJAUSS_RS00365	SM01340	NJAUSS_RS00365
NJAUSS_RS00370	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NJAUSS_RS00385	SM00852	Probable molybdopterin binding domain
NJAUSS_RS00390	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00405	SM00732	Likely ribonuclease with RNase H fold.
NJAUSS_RS00430	SM01403	NJAUSS_RS00430
NJAUSS_RS00450	SM01382	NJAUSS_RS00450
NJAUSS_RS00450	SM01383	NJAUSS_RS00450
NJAUSS_RS00465	SM00322	K homology RNA-binding domain
NJAUSS_RS00485	SM01374	NJAUSS_RS00485
NJAUSS_RS00490	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
NJAUSS_RS00555	SM00316	Ribosomal protein S1-like RNA-binding domain
NJAUSS_RS00575	SM00662	RNA polymerases D
NJAUSS_RS00715	SM00347	helix_turn_helix multiple antibiotic resistance protein
NJAUSS_RS00720	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00755	SM00363	S4 RNA-binding domain
NJAUSS_RS00770	SM00663	RNA polymerase I subunit A N-terminus
NJAUSS_RS00785	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS00880	SM00883	Chaperonin 10 Kd subunit
NJAUSS_RS00900	SM00838	Elongation factor G C-terminus
NJAUSS_RS00900	SM00889	Elongation factor G, domain IV
NJAUSS_RS00910	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
NJAUSS_RS00925	SM00422	helix_turn_helix, mercury resistance
NJAUSS_RS00930	SM01230	NJAUSS_RS00930
NJAUSS_RS00935	SM00849	Metallo-beta-lactamase superfamily
NJAUSS_RS00960	SM00342	helix_turn_helix, arabinose operon control protein
NJAUSS_RS01020	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01060	SM00861	Transketolase, pyrimidine binding domain
NJAUSS_RS01080	SM01208	NJAUSS_RS01080
NJAUSS_RS01085	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
NJAUSS_RS01085	SM00940	X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal
NJAUSS_RS01125	SM00478	endonuclease III
NJAUSS_RS01155	SM00710	Parallel beta-helix repeats
NJAUSS_RS01170	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01175	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS01220	SM00257	Lysin motif
NJAUSS_RS01230	SM00642	Alpha-amylase domain
NJAUSS_RS01240	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS01240	SM00866	NJAUSS_RS01240
NJAUSS_RS01255	SM00463	Small MutS-related domain
NJAUSS_RS01255	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
NJAUSS_RS01255	SM00534	ATPase domain of DNA mismatch repair MUTS family
NJAUSS_RS01280	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS01295	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01320	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
NJAUSS_RS01330	SM00854	Bacterial capsule synthesis protein PGA_cap
NJAUSS_RS01350	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01445	SM00829	Enoylreductase
NJAUSS_RS01460	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01465	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01480	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01510	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01515	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01530	SM00855	Phosphoglycerate mutase family
NJAUSS_RS01550	SM00271	DnaJ molecular chaperone homology domain
NJAUSS_RS01565	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS01575	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS01630	SM00829	Enoylreductase
NJAUSS_RS01745	SM00487	DEAD-like helicases superfamily
NJAUSS_RS01745	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS01750	SM00870	NJAUSS_RS01750
NJAUSS_RS01805	SM00845	GatB domain
NJAUSS_RS01810	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJAUSS_RS01815	SM00354	helix_turn _helix lactose operon repressor
NJAUSS_RS01855	SM01103	NJAUSS_RS01855
NJAUSS_RS01865	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJAUSS_RS01900	SM00422	helix_turn_helix, mercury resistance
NJAUSS_RS01920	SM00860	SMI1 / KNR4 family
NJAUSS_RS01930	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS01930	SM01086	C-terminal, D2-small domain, of ClpB protein
NJAUSS_RS01945	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS01945	SM00866	NJAUSS_RS01945
NJAUSS_RS01990	SM00450	Rhodanese Homology Domain
NJAUSS_RS02000	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS02010	SM00357	Cold shock protein domain
NJAUSS_RS02040	SM00981	NJAUSS_RS02040
NJAUSS_RS02055	SM00322	K homology RNA-binding domain
NJAUSS_RS02055	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJAUSS_RS02060	SM00072	Guanylate kinase homologues.
NJAUSS_RS02065	SM01409	NJAUSS_RS02065
NJAUSS_RS02070	SM00487	DEAD-like helicases superfamily
NJAUSS_RS02070	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS02085	SM00331	Sigma factor PP2C-like phosphatases
NJAUSS_RS02085	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
NJAUSS_RS02090	SM00220	Serine/Threonine protein kinases, catalytic domain
NJAUSS_RS02090	SM00740	NJAUSS_RS02090
NJAUSS_RS02100	SM00387	Histidine kinase-like ATPases
NJAUSS_RS02105	SM00421	helix_turn_helix, Lux Regulon
NJAUSS_RS02105	SM00448	cheY-homologous receiver domain
NJAUSS_RS02115	SM00316	Ribosomal protein S1-like RNA-binding domain
NJAUSS_RS02130	SM00487	DEAD-like helicases superfamily
NJAUSS_RS02130	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS02230	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS02230	SM00866	NJAUSS_RS02230
NJAUSS_RS02235	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS02235	SM00866	NJAUSS_RS02235
NJAUSS_RS02305	SM00487	DEAD-like helicases superfamily
NJAUSS_RS02315	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS02330	SM00838	Elongation factor G C-terminus
NJAUSS_RS02385	SM00842	Cell division protein FtsA
NJAUSS_RS02390	SM00864	Tubulin/FtsZ family, GTPase domain
NJAUSS_RS02390	SM00865	Tubulin/FtsZ family, C-terminal domain
NJAUSS_RS02410	SM00363	S4 RNA-binding domain
NJAUSS_RS02440	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS02440	SM01086	C-terminal, D2-small domain, of ClpB protein
NJAUSS_RS02455	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS02490	SM00422	helix_turn_helix, mercury resistance
NJAUSS_RS02545	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS02570	SM00855	Phosphoglycerate mutase family
NJAUSS_RS02640	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJAUSS_RS02670	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS02675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS02680	SM00481	DNA polymerase alpha chain like domain
NJAUSS_RS02725	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS02730	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS02735	SM00849	Metallo-beta-lactamase superfamily
NJAUSS_RS02740	SM00479	NJAUSS_RS02740
NJAUSS_RS02740	SM00487	DEAD-like helicases superfamily
NJAUSS_RS02740	SM00491	NJAUSS_RS02740
NJAUSS_RS02745	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
NJAUSS_RS02770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS02855	SM00858	NJAUSS_RS02855
NJAUSS_RS03065	SM00487	DEAD-like helicases superfamily
NJAUSS_RS03075	SM00889	Elongation factor G, domain IV
NJAUSS_RS03110	SM00470	ParB-like nuclease domain
NJAUSS_RS03125	SM00857	Resolvase, N terminal domain
NJAUSS_RS03150	SM00400	zinc finger
NJAUSS_RS03170	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS03210	SM00448	cheY-homologous receiver domain
NJAUSS_RS03210	SM00862	Transcriptional regulatory protein, C terminal
NJAUSS_RS03215	SM00387	Histidine kinase-like ATPases
NJAUSS_RS03215	SM00388	His Kinase A (phosphoacceptor) domain
NJAUSS_RS03220	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS03240	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS03245	SM01260	NJAUSS_RS03245
NJAUSS_RS03260	SM00857	Resolvase, N terminal domain
NJAUSS_RS03275	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS03300	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS03315	SM00482	DNA polymerase A domain
NJAUSS_RS03335	SM00885	D5 N terminal like
NJAUSS_RS03335	SM00942	Primase C terminal 1 (PriCT-1)
NJAUSS_RS03340	SM00990	NJAUSS_RS03340
NJAUSS_RS03345	SM00487	DEAD-like helicases superfamily
NJAUSS_RS03365	SM00507	HNH nucleases
NJAUSS_RS03375	SM00470	ParB-like nuclease domain
NJAUSS_RS03510	SM00257	Lysin motif
NJAUSS_RS03510	SM00646	NJAUSS_RS03510
NJAUSS_RS03515	SM00857	Resolvase, N terminal domain
NJAUSS_RS03520	SM00857	Resolvase, N terminal domain
NJAUSS_RS03560	SM00650	Ribosomal RNA adenine dimethylases
NJAUSS_RS03575	SM00347	helix_turn_helix multiple antibiotic resistance protein
NJAUSS_RS03640	SM00100	Cyclic nucleotide-monophosphate binding domain
NJAUSS_RS03640	SM00419	helix_turn_helix, cAMP Regulatory protein
NJAUSS_RS03740	SM00363	S4 RNA-binding domain
NJAUSS_RS03765	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS03775	SM00563	Phosphate acyltransferases
NJAUSS_RS03780	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NJAUSS_RS03785	SM00849	Metallo-beta-lactamase superfamily
NJAUSS_RS03795	SM00116	Domain in cystathionine beta-synthase and other proteins.
NJAUSS_RS03915	SM01321	NJAUSS_RS03915
NJAUSS_RS03955	SM00487	DEAD-like helicases superfamily
NJAUSS_RS04010	SM00420	helix_turn_helix, Deoxyribose operon repressor
NJAUSS_RS04010	SM01134	NJAUSS_RS04010
NJAUSS_RS04055	SM00859	Semialdehyde dehydrogenase, NAD binding domain
NJAUSS_RS04060	SM01130	NJAUSS_RS04060
NJAUSS_RS04140	SM00100	Cyclic nucleotide-monophosphate binding domain
NJAUSS_RS04160	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04165	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04200	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04205	SM00465	GIY-YIG type nucleases (URI domain)
NJAUSS_RS04240	SM01207	NJAUSS_RS04240
NJAUSS_RS04245	SM00387	Histidine kinase-like ATPases
NJAUSS_RS04245	SM00433	TopoisomeraseII
NJAUSS_RS04270	SM00434	DNA Topoisomerase IV
NJAUSS_RS04300	SM00316	Ribosomal protein S1-like RNA-binding domain
NJAUSS_RS04330	SM00981	NJAUSS_RS04330
NJAUSS_RS04365	SM00363	S4 RNA-binding domain
NJAUSS_RS04390	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
NJAUSS_RS04395	SM00851	MGS-like domain
NJAUSS_RS04395	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
NJAUSS_RS04395	SM01209	NJAUSS_RS04395
NJAUSS_RS04425	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04430	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04455	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04495	SM00478	endonuclease III
NJAUSS_RS04500	SM01240	NJAUSS_RS04500
NJAUSS_RS04525	SM00420	helix_turn_helix, Deoxyribose operon repressor
NJAUSS_RS04525	SM01134	NJAUSS_RS04525
NJAUSS_RS04560	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04600	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04600	SM00994	ClpX C4-type zinc finger
NJAUSS_RS04600	SM01086	C-terminal, D2-small domain, of ClpB protein
NJAUSS_RS04610	SM00562	NJAUSS_RS04610
NJAUSS_RS04615	SM00910	NJAUSS_RS04615
NJAUSS_RS04620	SM00838	Elongation factor G C-terminus
NJAUSS_RS04630	SM00894	Excalibur calcium-binding domain
NJAUSS_RS04645	SM00937	NJAUSS_RS04645
NJAUSS_RS04690	SM00910	NJAUSS_RS04690
NJAUSS_RS04705	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04720	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS04720	SM00866	NJAUSS_RS04720
NJAUSS_RS04730	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04730	SM00962	SRP54-type protein, GTPase domain
NJAUSS_RS04730	SM00963	SRP54-type protein, helical bundle domain
NJAUSS_RS04765	SM00387	Histidine kinase-like ATPases
NJAUSS_RS04770	SM00448	cheY-homologous receiver domain
NJAUSS_RS04770	SM00862	Transcriptional regulatory protein, C terminal
NJAUSS_RS04790	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04805	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS04840	SM00342	helix_turn_helix, arabinose operon control protein
NJAUSS_RS04840	SM00871	Bacterial transcription activator, effector binding domain
NJAUSS_RS04865	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
NJAUSS_RS04865	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
NJAUSS_RS04865	SM00493	NJAUSS_RS04865
NJAUSS_RS04875	SM01266	NJAUSS_RS04875
NJAUSS_RS04885	SM00450	Rhodanese Homology Domain
NJAUSS_RS04890	SM00450	Rhodanese Homology Domain
NJAUSS_RS04940	SM00986	Uracil DNA glycosylase superfamily
NJAUSS_RS04940	SM00987	UreE urease accessory protein, C-terminal domain 
NJAUSS_RS04960	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
NJAUSS_RS04995	SM00642	Alpha-amylase domain
NJAUSS_RS05000	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS05000	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NJAUSS_RS05005	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS05005	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NJAUSS_RS05020	SM01208	NJAUSS_RS05020
NJAUSS_RS05035	SM00487	DEAD-like helicases superfamily
NJAUSS_RS05035	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS05040	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS05040	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NJAUSS_RS05045	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05055	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05095	SM01061	CAT RNA binding domain
NJAUSS_RS05100	SM01133	NJAUSS_RS05100
NJAUSS_RS05130	SM00420	helix_turn_helix, Deoxyribose operon repressor
NJAUSS_RS05130	SM01134	NJAUSS_RS05130
NJAUSS_RS05160	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS05165	SM00478	endonuclease III
NJAUSS_RS05175	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05180	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05200	SM00954	Region found in RelA / SpoT proteins
NJAUSS_RS05205	SM01118	NJAUSS_RS05205
NJAUSS_RS05210	SM01400	NJAUSS_RS05210
NJAUSS_RS05230	SM00881	CoA binding domain
NJAUSS_RS05250	SM00434	DNA Topoisomerase IV
NJAUSS_RS05280	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05295	SM01133	NJAUSS_RS05295
NJAUSS_RS05300	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
NJAUSS_RS05320	SM01321	NJAUSS_RS05320
NJAUSS_RS05325	SM00460	Transglutaminase/protease-like homologues
NJAUSS_RS05335	SM00387	Histidine kinase-like ATPases
NJAUSS_RS05335	SM00388	His Kinase A (phosphoacceptor) domain
NJAUSS_RS05340	SM00448	cheY-homologous receiver domain
NJAUSS_RS05340	SM00862	Transcriptional regulatory protein, C terminal
NJAUSS_RS05360	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05365	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05410	SM00904	Riboflavin kinase
NJAUSS_RS05520	SM00347	helix_turn_helix multiple antibiotic resistance protein
NJAUSS_RS05550	SM00905	Dihydroneopterin aldolase
NJAUSS_RS05590	SM00873	B3/4 domain
NJAUSS_RS05590	SM00874	tRNA synthetase B5 domain
NJAUSS_RS05590	SM00896	Ferredoxin-fold anticodon binding domain
NJAUSS_RS05640	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJAUSS_RS05640	SM00895	NJAUSS_RS05640
NJAUSS_RS05660	SM00892	DNA/RNA non-specific endonuclease
NJAUSS_RS05685	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05720	SM00046	Diacylglycerol kinase catalytic domain (presumed)
NJAUSS_RS05725	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NJAUSS_RS05725	SM00292	breast cancer carboxy-terminal domain
NJAUSS_RS05725	SM00532	Ligase N family
NJAUSS_RS05755	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS05755	SM00962	SRP54-type protein, GTPase domain
NJAUSS_RS05755	SM00963	SRP54-type protein, helical bundle domain
NJAUSS_RS05770	SM00968	SMC proteins Flexible Hinge Domain
NJAUSS_RS05775	SM00358	Double-stranded RNA binding motif
NJAUSS_RS05775	SM00535	Ribonuclease III family
NJAUSS_RS05785	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NJAUSS_RS05815	SM01329	NJAUSS_RS05815
NJAUSS_RS05850	SM00354	helix_turn _helix lactose operon repressor
NJAUSS_RS05880	SM01323	NJAUSS_RS05880
NJAUSS_RS05960	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS05985	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NJAUSS_RS06055	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06080	SM01133	NJAUSS_RS06080
NJAUSS_RS06210	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06235	SM00047	Lysozyme subfamily 2
NJAUSS_RS06240	SM00646	NJAUSS_RS06240
NJAUSS_RS06320	SM00155	Phospholipase D. Active site motifs.
NJAUSS_RS06325	SM00631	NJAUSS_RS06325
NJAUSS_RS06425	SM00649	Ribosomal protein L11/L12
NJAUSS_RS06440	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06440	SM00843	NJAUSS_RS06440
NJAUSS_RS06445	SM00640	Glycosyl hydrolases family 32
NJAUSS_RS06465	SM00354	helix_turn _helix lactose operon repressor
NJAUSS_RS06525	SM00493	NJAUSS_RS06525
NJAUSS_RS06535	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06550	SM00849	Metallo-beta-lactamase superfamily
NJAUSS_RS06555	SM00091	PAS domain
NJAUSS_RS06555	SM00387	Histidine kinase-like ATPases
NJAUSS_RS06555	SM00388	His Kinase A (phosphoacceptor) domain
NJAUSS_RS06560	SM00448	cheY-homologous receiver domain
NJAUSS_RS06560	SM00862	Transcriptional regulatory protein, C terminal
NJAUSS_RS06565	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06570	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS06585	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NJAUSS_RS06615	SM00354	helix_turn _helix lactose operon repressor
NJAUSS_RS06705	SM00881	CoA binding domain
NJAUSS_RS06715	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
NJAUSS_RS06715	SM00474	3'-5' exonuclease
NJAUSS_RS06715	SM00475	5'-3' exonuclease
NJAUSS_RS06715	SM00482	DNA polymerase A domain
NJAUSS_RS06730	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06760	SM00829	Enoylreductase
NJAUSS_RS06770	SM00316	Ribosomal protein S1-like RNA-binding domain
NJAUSS_RS06770	SM00955	NJAUSS_RS06770
NJAUSS_RS06795	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
NJAUSS_RS06795	SM01232	NJAUSS_RS06795
NJAUSS_RS06840	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06845	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06860	SM00899	NJAUSS_RS06860
NJAUSS_RS06875	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS06880	SM00937	NJAUSS_RS06880
NJAUSS_RS06905	SM00831	Cation transporter/ATPase, N-terminus
NJAUSS_RS06950	SM00400	zinc finger
NJAUSS_RS06950	SM00493	NJAUSS_RS06950
NJAUSS_RS06990	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJAUSS_RS07040	SM00487	DEAD-like helicases superfamily
NJAUSS_RS07060	SM00244	prohibitin homologues
NJAUSS_RS07075	SM00986	Uracil DNA glycosylase superfamily
NJAUSS_RS07075	SM00987	UreE urease accessory protein, C-terminal domain 
NJAUSS_RS07115	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07150	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS07160	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07170	SM00235	Zinc-dependent metalloprotease
NJAUSS_RS07180	SM00849	Metallo-beta-lactamase superfamily
NJAUSS_RS07195	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07220	SM01061	CAT RNA binding domain
NJAUSS_RS07235	SM00028	Tetratricopeptide repeats
NJAUSS_RS07270	SM01192	NJAUSS_RS07270
NJAUSS_RS07270	SM01193	NJAUSS_RS07270
NJAUSS_RS07305	SM00387	Histidine kinase-like ATPases
NJAUSS_RS07305	SM00433	TopoisomeraseII
NJAUSS_RS07330	SM00885	D5 N terminal like
NJAUSS_RS07395	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS07435	SM00830	Chorismate mutase type II
NJAUSS_RS07475	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07480	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07515	SM00642	Alpha-amylase domain
NJAUSS_RS07520	SM00642	Alpha-amylase domain
NJAUSS_RS07545	SM00342	helix_turn_helix, arabinose operon control protein
NJAUSS_RS07605	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
NJAUSS_RS07610	SM00487	DEAD-like helicases superfamily
NJAUSS_RS07610	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS07625	SM00365	Leucine-rich repeat, SDS22-like subfamily
NJAUSS_RS07665	SM01022	NJAUSS_RS07665
NJAUSS_RS07700	SM01321	NJAUSS_RS07700
NJAUSS_RS07710	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07715	SM00387	Histidine kinase-like ATPases
NJAUSS_RS07720	SM00448	cheY-homologous receiver domain
NJAUSS_RS07720	SM00862	Transcriptional regulatory protein, C terminal
NJAUSS_RS07745	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07750	SM00347	helix_turn_helix multiple antibiotic resistance protein
NJAUSS_RS07800	SM00731	SprT homologues.
NJAUSS_RS07880	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS07910	SM00487	DEAD-like helicases superfamily
NJAUSS_RS07910	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS07925	SM01321	NJAUSS_RS07925
NJAUSS_RS07930	SM00855	Phosphoglycerate mutase family
NJAUSS_RS07965	SM00411	bacterial (prokaryotic) histone like domain
NJAUSS_RS07995	SM00363	S4 RNA-binding domain
NJAUSS_RS08025	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NJAUSS_RS08025	SM00387	Histidine kinase-like ATPases
NJAUSS_RS08025	SM00388	His Kinase A (phosphoacceptor) domain
NJAUSS_RS08030	SM00448	cheY-homologous receiver domain
NJAUSS_RS08030	SM00862	Transcriptional regulatory protein, C terminal
NJAUSS_RS08040	SM00327	von Willebrand factor (vWF) type A domain
NJAUSS_RS08055	SM01131	NJAUSS_RS08055
NJAUSS_RS08070	SM01091	Transporter associated domain
NJAUSS_RS08075	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS08135	SM00450	Rhodanese Homology Domain
NJAUSS_RS08145	SM00421	helix_turn_helix, Lux Regulon
NJAUSS_RS08145	SM00448	cheY-homologous receiver domain
NJAUSS_RS08160	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS08175	SM00226	Low molecular weight phosphatase family
NJAUSS_RS08180	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
NJAUSS_RS08190	SM00014	Acid phosphatase homologues
NJAUSS_RS08210	SM01234	NJAUSS_RS08210
NJAUSS_RS08215	SM00363	S4 RNA-binding domain
NJAUSS_RS08280	SM00967	RNA 2'-O ribose methyltransferase substrate binding
NJAUSS_RS08320	SM00487	DEAD-like helicases superfamily
NJAUSS_RS08320	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS08365	SM00448	cheY-homologous receiver domain
NJAUSS_RS08365	SM00862	Transcriptional regulatory protein, C terminal
NJAUSS_RS08370	SM01350	NJAUSS_RS08370
NJAUSS_RS08390	SM00487	DEAD-like helicases superfamily
NJAUSS_RS08390	SM00490	helicase superfamily c-terminal domain
NJAUSS_RS08410	SM00740	NJAUSS_RS08410
NJAUSS_RS08425	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS08470	SM00900	NJAUSS_RS08470
NJAUSS_RS08530	SM00873	B3/4 domain
NJAUSS_RS08540	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS08540	SM00930	NJAUSS_RS08540
NJAUSS_RS08615	SM00487	DEAD-like helicases superfamily
NJAUSS_RS08660	SM00878	Biotin carboxylase C-terminal domain
NJAUSS_RS08675	SM00825	Beta-ketoacyl synthase
NJAUSS_RS08680	SM00822	NJAUSS_RS08680
NJAUSS_RS08685	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NJAUSS_RS08705	SM00347	helix_turn_helix multiple antibiotic resistance protein
NJAUSS_RS08730	SM01005	Alanine racemase, C-terminal domain
NJAUSS_RS08740	SM00957	SecA DEAD-like domain
NJAUSS_RS08740	SM00958	SecA preprotein cross-linking domain
NJAUSS_RS08760	SM00640	Glycosyl hydrolases family 32
NJAUSS_RS08765	SM00354	helix_turn _helix lactose operon repressor
NJAUSS_RS08780	SM00841	Elongation factor P, C-terminal
NJAUSS_RS08780	SM01185	NJAUSS_RS08780
NJAUSS_RS08790	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS08850	SM00861	Transketolase, pyrimidine binding domain
NJAUSS_RS08895	SM00316	Ribosomal protein S1-like RNA-binding domain
NJAUSS_RS08895	SM00322	K homology RNA-binding domain
NJAUSS_RS08920	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS08950	SM01120	NJAUSS_RS08950
NJAUSS_RS08950	SM01121	NJAUSS_RS08950
NJAUSS_RS08975	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS08980	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS08990	SM00936	Penicillin-binding protein 5, C-terminal domain 
NJAUSS_RS09015	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09035	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS09040	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09050	SM00244	prohibitin homologues
NJAUSS_RS09135	SM00967	RNA 2'-O ribose methyltransferase substrate binding
NJAUSS_RS09140	SM00740	NJAUSS_RS09140
NJAUSS_RS09160	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09170	SM00342	helix_turn_helix, arabinose operon control protein
NJAUSS_RS09170	SM00448	cheY-homologous receiver domain
NJAUSS_RS09215	SM00872	Alpha mannosidase, middle domain
NJAUSS_RS09220	SM01149	NJAUSS_RS09220
NJAUSS_RS09230	SM01208	NJAUSS_RS09230
NJAUSS_RS09240	SM00840	NJAUSS_RS09240
NJAUSS_RS09260	SM00316	Ribosomal protein S1-like RNA-binding domain
NJAUSS_RS09260	SM00322	K homology RNA-binding domain
NJAUSS_RS09290	SM01387	NJAUSS_RS09290
NJAUSS_RS09310	SM00363	S4 RNA-binding domain
NJAUSS_RS09350	SM01329	NJAUSS_RS09350
NJAUSS_RS09355	SM00917	LeuA allosteric (dimerisation) domain
NJAUSS_RS09380	SM00479	NJAUSS_RS09380
NJAUSS_RS09380	SM00481	DNA polymerase alpha chain like domain
NJAUSS_RS09400	SM01120	NJAUSS_RS09400
NJAUSS_RS09435	SM01323	NJAUSS_RS09435
NJAUSS_RS09440	SM00788	Adenylosuccinate synthetase
NJAUSS_RS09480	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09480	SM01086	C-terminal, D2-small domain, of ClpB protein
NJAUSS_RS09525	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
NJAUSS_RS09525	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
NJAUSS_RS09575	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
NJAUSS_RS09595	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09605	SM00530	Helix-turn-helix XRE-family like proteins 
NJAUSS_RS09625	SM00650	Ribosomal RNA adenine dimethylases
NJAUSS_RS09665	SM00493	NJAUSS_RS09665
NJAUSS_RS09680	SM00393	Putative single-stranded nucleic acids-binding domain
NJAUSS_RS09680	SM01245	NJAUSS_RS09680
NJAUSS_RS09750	SM00850	LytTr DNA-binding domain
NJAUSS_RS09760	SM00947	Carbonic anhydrase
NJAUSS_RS09765	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09770	SM00855	Phosphoglycerate mutase family
NJAUSS_RS09780	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09785	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09790	SM00347	helix_turn_helix multiple antibiotic resistance protein
NJAUSS_RS09855	SM00861	Transketolase, pyrimidine binding domain
NJAUSS_RS09875	SM01007	Class II Aldolase and Adducin N-terminal domain
NJAUSS_RS09885	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
NJAUSS_RS09905	SM00642	Alpha-amylase domain
NJAUSS_RS09910	SM00354	helix_turn _helix lactose operon repressor
NJAUSS_RS09915	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS09925	SM00062	Bacterial periplasmic substrate-binding proteins
NJAUSS_RS09995	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS10010	SM00529	Helix-turn-helix diphteria tox regulatory element
NJAUSS_RS10010	SM00899	NJAUSS_RS10010
NJAUSS_RS10045	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJAUSS_RS10045	SM00954	Region found in RelA / SpoT proteins
NJAUSS_RS10115	SM01022	NJAUSS_RS10115
NJAUSS_RS10130	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS10190	SM00850	LytTr DNA-binding domain
NJAUSS_RS10195	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
NJAUSS_RS10195	SM00534	ATPase domain of DNA mismatch repair MUTS family
NJAUSS_RS10205	SM00836	DALR anticodon binding domain
NJAUSS_RS10205	SM01016	Arginyl tRNA synthetase N terminal dom
NJAUSS_RS10210	SM00287	Bacterial SH3 domain homologues
NJAUSS_RS10250	SM00354	helix_turn _helix lactose operon repressor
NJAUSS_RS10255	SM00642	Alpha-amylase domain
NJAUSS_RS10290	SM01217	NJAUSS_RS10290
NJAUSS_RS10300	SM01217	NJAUSS_RS10300
NJAUSS_RS10305	SM00448	cheY-homologous receiver domain
NJAUSS_RS10305	SM00850	LytTr DNA-binding domain
NJAUSS_RS10330	SM00363	S4 RNA-binding domain
NJAUSS_RS10330	SM01390	NJAUSS_RS10330
NJAUSS_RS10360	SM01228	NJAUSS_RS10360
NJAUSS_RS10405	SM00257	Lysin motif
NJAUSS_RS10415	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS10420	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS10455	SM00116	Domain in cystathionine beta-synthase and other proteins.
NJAUSS_RS10455	SM01240	NJAUSS_RS10455
NJAUSS_RS10470	SM00382	ATPases associated with a variety of cellular activities
NJAUSS_RS10505	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NJAUSS_RS10510	SM00470	ParB-like nuclease domain
