SSU12_RS00005 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SSU12_RS00010 SM00480 DNA polymerase III beta subunit SSU12_RS00025 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS00040 SM00487 DEAD-like helicases superfamily SSU12_RS00040 SM00490 helicase superfamily c-terminal domain SSU12_RS00040 SM00982 SSU12_RS00040 SSU12_RS00040 SM01058 CarD-like/TRCF domain SSU12_RS00045 SM00363 S4 RNA-binding domain SSU12_RS00065 SM00977 TilS substrate C-terminal domain SSU12_RS00075 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00200 SM01400 SSU12_RS00200 SSU12_RS00230 SM01211 SSU12_RS00230 SSU12_RS00250 SM00798 AICARFT/IMPCHase bienzyme SSU12_RS00250 SM00851 MGS-like domain SSU12_RS00255 SM01209 SSU12_RS00255 SSU12_RS00255 SM01210 SSU12_RS00255 SSU12_RS00260 SM01001 AIR carboxylase SSU12_RS00280 SM00998 Adenylosuccinate lyase C-terminus SSU12_RS00300 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00310 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00315 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00330 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS00365 SM00853 MutL C terminal dimerisation domain SSU12_RS00365 SM01340 SSU12_RS00365 SSU12_RS00370 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSU12_RS00385 SM00852 Probable molybdopterin binding domain SSU12_RS00390 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00405 SM00732 Likely ribonuclease with RNase H fold. SSU12_RS00425 SM01403 SSU12_RS00425 SSU12_RS00445 SM01382 SSU12_RS00445 SSU12_RS00445 SM01383 SSU12_RS00445 SSU12_RS00460 SM00322 K homology RNA-binding domain SSU12_RS00480 SM01374 SSU12_RS00480 SSU12_RS00485 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSU12_RS00550 SM00316 Ribosomal protein S1-like RNA-binding domain SSU12_RS00570 SM00662 RNA polymerases D SSU12_RS00710 SM00347 helix_turn_helix multiple antibiotic resistance protein SSU12_RS00715 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00750 SM00363 S4 RNA-binding domain SSU12_RS00765 SM00663 RNA polymerase I subunit A N-terminus SSU12_RS00780 SM00382 ATPases associated with a variety of cellular activities SSU12_RS00875 SM00883 Chaperonin 10 Kd subunit SSU12_RS00895 SM00838 Elongation factor G C-terminus SSU12_RS00895 SM00889 Elongation factor G, domain IV SSU12_RS00905 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SSU12_RS00920 SM00422 helix_turn_helix, mercury resistance SSU12_RS00925 SM01230 SSU12_RS00925 SSU12_RS00930 SM00849 Metallo-beta-lactamase superfamily SSU12_RS00955 SM00342 helix_turn_helix, arabinose operon control protein SSU12_RS01015 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01055 SM00861 Transketolase, pyrimidine binding domain SSU12_RS01075 SM01208 SSU12_RS01075 SSU12_RS01080 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SSU12_RS01080 SM00940 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal SSU12_RS01120 SM00478 endonuclease III SSU12_RS01145 SM00710 Parallel beta-helix repeats SSU12_RS01160 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01165 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS01210 SM00257 Lysin motif SSU12_RS01215 SM00642 Alpha-amylase domain SSU12_RS01225 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS01225 SM00866 SSU12_RS01225 SSU12_RS01240 SM00463 Small MutS-related domain SSU12_RS01240 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSU12_RS01240 SM00534 ATPase domain of DNA mismatch repair MUTS family SSU12_RS01265 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS01280 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01305 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SSU12_RS01315 SM00854 Bacterial capsule synthesis protein PGA_cap SSU12_RS01335 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01435 SM00829 Enoylreductase SSU12_RS01450 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01455 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01470 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01500 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01505 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01520 SM00855 Phosphoglycerate mutase family SSU12_RS01540 SM00271 DnaJ molecular chaperone homology domain SSU12_RS01555 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS01565 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS01625 SM00829 Enoylreductase SSU12_RS01740 SM00487 DEAD-like helicases superfamily SSU12_RS01740 SM00490 helicase superfamily c-terminal domain SSU12_RS01745 SM00870 SSU12_RS01745 SSU12_RS01800 SM00845 GatB domain SSU12_RS01805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSU12_RS01810 SM00354 helix_turn _helix lactose operon repressor SSU12_RS01850 SM01103 SSU12_RS01850 SSU12_RS01860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSU12_RS01895 SM00422 helix_turn_helix, mercury resistance SSU12_RS01915 SM00860 SMI1 / KNR4 family SSU12_RS01925 SM00382 ATPases associated with a variety of cellular activities SSU12_RS01925 SM01086 C-terminal, D2-small domain, of ClpB protein SSU12_RS01940 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS01940 SM00866 SSU12_RS01940 SSU12_RS01985 SM00450 Rhodanese Homology Domain SSU12_RS01995 SM00382 ATPases associated with a variety of cellular activities SSU12_RS02005 SM00357 Cold shock protein domain SSU12_RS02035 SM00981 SSU12_RS02035 SSU12_RS02050 SM00322 K homology RNA-binding domain SSU12_RS02050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSU12_RS02055 SM00072 Guanylate kinase homologues. SSU12_RS02060 SM01409 SSU12_RS02060 SSU12_RS02065 SM00487 DEAD-like helicases superfamily SSU12_RS02065 SM00490 helicase superfamily c-terminal domain SSU12_RS02080 SM00331 Sigma factor PP2C-like phosphatases SSU12_RS02080 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SSU12_RS02085 SM00220 Serine/Threonine protein kinases, catalytic domain SSU12_RS02085 SM00740 SSU12_RS02085 SSU12_RS02095 SM00387 Histidine kinase-like ATPases SSU12_RS02100 SM00421 helix_turn_helix, Lux Regulon SSU12_RS02100 SM00448 cheY-homologous receiver domain SSU12_RS02110 SM00316 Ribosomal protein S1-like RNA-binding domain SSU12_RS02125 SM00487 DEAD-like helicases superfamily SSU12_RS02125 SM00490 helicase superfamily c-terminal domain SSU12_RS02225 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS02225 SM00866 SSU12_RS02225 SSU12_RS02230 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS02230 SM00866 SSU12_RS02230 SSU12_RS02300 SM00487 DEAD-like helicases superfamily SSU12_RS02310 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS02325 SM00838 Elongation factor G C-terminus SSU12_RS02380 SM00842 Cell division protein FtsA SSU12_RS02385 SM00864 Tubulin/FtsZ family, GTPase domain SSU12_RS02385 SM00865 Tubulin/FtsZ family, C-terminal domain SSU12_RS02405 SM00363 S4 RNA-binding domain SSU12_RS02435 SM00382 ATPases associated with a variety of cellular activities SSU12_RS02435 SM01086 C-terminal, D2-small domain, of ClpB protein SSU12_RS02450 SM00382 ATPases associated with a variety of cellular activities SSU12_RS02485 SM00422 helix_turn_helix, mercury resistance SSU12_RS02540 SM00382 ATPases associated with a variety of cellular activities SSU12_RS02565 SM00855 Phosphoglycerate mutase family SSU12_RS02635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSU12_RS02665 SM00382 ATPases associated with a variety of cellular activities SSU12_RS02670 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS02675 SM00481 DNA polymerase alpha chain like domain SSU12_RS02720 SM00382 ATPases associated with a variety of cellular activities SSU12_RS02725 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS02730 SM00849 Metallo-beta-lactamase superfamily SSU12_RS02735 SM00479 SSU12_RS02735 SSU12_RS02735 SM00487 DEAD-like helicases superfamily SSU12_RS02735 SM00491 SSU12_RS02735 SSU12_RS02740 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SSU12_RS02765 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS02850 SM00858 SSU12_RS02850 SSU12_RS02980 SM00347 helix_turn_helix multiple antibiotic resistance protein SSU12_RS03045 SM00100 Cyclic nucleotide-monophosphate binding domain SSU12_RS03045 SM00419 helix_turn_helix, cAMP Regulatory protein SSU12_RS03150 SM00363 S4 RNA-binding domain SSU12_RS03175 SM00382 ATPases associated with a variety of cellular activities SSU12_RS03185 SM00563 Phosphate acyltransferases SSU12_RS03190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSU12_RS03195 SM00849 Metallo-beta-lactamase superfamily SSU12_RS03205 SM00116 Domain in cystathionine beta-synthase and other proteins. SSU12_RS03325 SM01321 SSU12_RS03325 SSU12_RS03365 SM00487 DEAD-like helicases superfamily SSU12_RS03415 SM00420 helix_turn_helix, Deoxyribose operon repressor SSU12_RS03415 SM01134 SSU12_RS03415 SSU12_RS03460 SM00859 Semialdehyde dehydrogenase, NAD binding domain SSU12_RS03465 SM01130 SSU12_RS03465 SSU12_RS03545 SM00100 Cyclic nucleotide-monophosphate binding domain SSU12_RS03565 SM00382 ATPases associated with a variety of cellular activities SSU12_RS03570 SM00382 ATPases associated with a variety of cellular activities SSU12_RS03605 SM00382 ATPases associated with a variety of cellular activities SSU12_RS03610 SM00465 GIY-YIG type nucleases (URI domain) SSU12_RS03645 SM01207 SSU12_RS03645 SSU12_RS03650 SM00387 Histidine kinase-like ATPases SSU12_RS03650 SM00433 TopoisomeraseII SSU12_RS03675 SM00434 DNA Topoisomerase IV SSU12_RS03710 SM00316 Ribosomal protein S1-like RNA-binding domain SSU12_RS03740 SM00981 SSU12_RS03740 SSU12_RS03775 SM00363 S4 RNA-binding domain SSU12_RS03800 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SSU12_RS03805 SM00851 MGS-like domain SSU12_RS03805 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SSU12_RS03805 SM01209 SSU12_RS03805 SSU12_RS03835 SM00382 ATPases associated with a variety of cellular activities SSU12_RS03840 SM00382 ATPases associated with a variety of cellular activities SSU12_RS03865 SM00382 ATPases associated with a variety of cellular activities SSU12_RS03905 SM00478 endonuclease III SSU12_RS03910 SM01240 SSU12_RS03910 SSU12_RS03935 SM00420 helix_turn_helix, Deoxyribose operon repressor SSU12_RS03935 SM01134 SSU12_RS03935 SSU12_RS03970 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04010 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04010 SM00994 ClpX C4-type zinc finger SSU12_RS04010 SM01086 C-terminal, D2-small domain, of ClpB protein SSU12_RS04020 SM00562 SSU12_RS04020 SSU12_RS04025 SM00910 SSU12_RS04025 SSU12_RS04030 SM00838 Elongation factor G C-terminus SSU12_RS04040 SM00894 Excalibur calcium-binding domain SSU12_RS04055 SM00937 SSU12_RS04055 SSU12_RS04100 SM00910 SSU12_RS04100 SSU12_RS04115 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04190 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS04190 SM00866 SSU12_RS04190 SSU12_RS04200 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04200 SM00962 SRP54-type protein, GTPase domain SSU12_RS04200 SM00963 SRP54-type protein, helical bundle domain SSU12_RS04235 SM00387 Histidine kinase-like ATPases SSU12_RS04240 SM00448 cheY-homologous receiver domain SSU12_RS04240 SM00862 Transcriptional regulatory protein, C terminal SSU12_RS04260 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04275 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04310 SM00342 helix_turn_helix, arabinose operon control protein SSU12_RS04310 SM00871 Bacterial transcription activator, effector binding domain SSU12_RS04335 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS04390 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04395 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS04425 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS04445 SM00400 zinc finger SSU12_RS04490 SM00650 Ribosomal RNA adenine dimethylases SSU12_RS04505 SM00470 ParB-like nuclease domain SSU12_RS04530 SM00889 Elongation factor G, domain IV SSU12_RS04540 SM00487 DEAD-like helicases superfamily SSU12_RS04645 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SSU12_RS04645 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SSU12_RS04645 SM00493 SSU12_RS04645 SSU12_RS04655 SM01266 SSU12_RS04655 SSU12_RS04665 SM00450 Rhodanese Homology Domain SSU12_RS04670 SM00450 Rhodanese Homology Domain SSU12_RS04720 SM00986 Uracil DNA glycosylase superfamily SSU12_RS04720 SM00987 UreE urease accessory protein, C-terminal domain SSU12_RS04740 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSU12_RS04775 SM00642 Alpha-amylase domain SSU12_RS04780 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS04780 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSU12_RS04785 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS04785 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSU12_RS04800 SM01208 SSU12_RS04800 SSU12_RS04815 SM00487 DEAD-like helicases superfamily SSU12_RS04815 SM00490 helicase superfamily c-terminal domain SSU12_RS04820 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS04820 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SSU12_RS04825 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04835 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04875 SM01061 CAT RNA binding domain SSU12_RS04880 SM01133 SSU12_RS04880 SSU12_RS04910 SM00420 helix_turn_helix, Deoxyribose operon repressor SSU12_RS04910 SM01134 SSU12_RS04910 SSU12_RS04940 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS04945 SM00478 endonuclease III SSU12_RS04955 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04960 SM00382 ATPases associated with a variety of cellular activities SSU12_RS04980 SM00954 Region found in RelA / SpoT proteins SSU12_RS04985 SM01118 SSU12_RS04985 SSU12_RS04990 SM01400 SSU12_RS04990 SSU12_RS05010 SM00881 CoA binding domain SSU12_RS05030 SM00434 DNA Topoisomerase IV SSU12_RS05060 SM00382 ATPases associated with a variety of cellular activities SSU12_RS05075 SM01133 SSU12_RS05075 SSU12_RS05080 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SSU12_RS05100 SM01321 SSU12_RS05100 SSU12_RS05105 SM00460 Transglutaminase/protease-like homologues SSU12_RS05115 SM00387 Histidine kinase-like ATPases SSU12_RS05115 SM00388 His Kinase A (phosphoacceptor) domain SSU12_RS05120 SM00448 cheY-homologous receiver domain SSU12_RS05120 SM00862 Transcriptional regulatory protein, C terminal SSU12_RS05140 SM00382 ATPases associated with a variety of cellular activities SSU12_RS05145 SM00382 ATPases associated with a variety of cellular activities SSU12_RS05190 SM00904 Riboflavin kinase SSU12_RS05300 SM00347 helix_turn_helix multiple antibiotic resistance protein SSU12_RS05330 SM00905 Dihydroneopterin aldolase SSU12_RS05370 SM00873 B3/4 domain SSU12_RS05370 SM00874 tRNA synthetase B5 domain SSU12_RS05370 SM00896 Ferredoxin-fold anticodon binding domain SSU12_RS05420 SM00345 helix_turn_helix gluconate operon transcriptional repressor SSU12_RS05420 SM00895 SSU12_RS05420 SSU12_RS05440 SM00892 DNA/RNA non-specific endonuclease SSU12_RS05465 SM00382 ATPases associated with a variety of cellular activities SSU12_RS05500 SM00046 Diacylglycerol kinase catalytic domain (presumed) SSU12_RS05505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SSU12_RS05505 SM00292 breast cancer carboxy-terminal domain SSU12_RS05505 SM00532 Ligase N family SSU12_RS05535 SM00382 ATPases associated with a variety of cellular activities SSU12_RS05535 SM00962 SRP54-type protein, GTPase domain SSU12_RS05535 SM00963 SRP54-type protein, helical bundle domain SSU12_RS05550 SM00968 SMC proteins Flexible Hinge Domain SSU12_RS05555 SM00358 Double-stranded RNA binding motif SSU12_RS05555 SM00535 Ribonuclease III family SSU12_RS05565 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSU12_RS05595 SM01329 SSU12_RS05595 SSU12_RS05630 SM00354 helix_turn _helix lactose operon repressor SSU12_RS05660 SM01323 SSU12_RS05660 SSU12_RS05740 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS05765 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSU12_RS05835 SM00382 ATPases associated with a variety of cellular activities SSU12_RS05860 SM01133 SSU12_RS05860 SSU12_RS05990 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06015 SM00047 Lysozyme subfamily 2 SSU12_RS06100 SM00155 Phospholipase D. Active site motifs. SSU12_RS06105 SM00631 SSU12_RS06105 SSU12_RS06205 SM00649 Ribosomal protein L11/L12 SSU12_RS06220 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06220 SM00843 SSU12_RS06220 SSU12_RS06225 SM00640 Glycosyl hydrolases family 32 SSU12_RS06245 SM00354 helix_turn _helix lactose operon repressor SSU12_RS06305 SM00493 SSU12_RS06305 SSU12_RS06315 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06325 SM00849 Metallo-beta-lactamase superfamily SSU12_RS06330 SM00091 PAS domain SSU12_RS06330 SM00387 Histidine kinase-like ATPases SSU12_RS06330 SM00388 His Kinase A (phosphoacceptor) domain SSU12_RS06335 SM00448 cheY-homologous receiver domain SSU12_RS06335 SM00862 Transcriptional regulatory protein, C terminal SSU12_RS06340 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06345 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS06360 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SSU12_RS06390 SM00354 helix_turn _helix lactose operon repressor SSU12_RS06410 SM00881 CoA binding domain SSU12_RS06420 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SSU12_RS06420 SM00474 3'-5' exonuclease SSU12_RS06420 SM00475 5'-3' exonuclease SSU12_RS06420 SM00482 DNA polymerase A domain SSU12_RS06435 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06475 SM00316 Ribosomal protein S1-like RNA-binding domain SSU12_RS06475 SM00955 SSU12_RS06475 SSU12_RS06500 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SSU12_RS06500 SM01232 SSU12_RS06500 SSU12_RS06545 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06550 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06565 SM00899 SSU12_RS06565 SSU12_RS06580 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06585 SM00937 SSU12_RS06585 SSU12_RS06610 SM00831 Cation transporter/ATPase, N-terminus SSU12_RS06655 SM00400 zinc finger SSU12_RS06655 SM00493 SSU12_RS06655 SSU12_RS06695 SM00729 Elongator protein 3, MiaB family, Radical SAM SSU12_RS06750 SM00487 DEAD-like helicases superfamily SSU12_RS06770 SM00244 prohibitin homologues SSU12_RS06785 SM00986 Uracil DNA glycosylase superfamily SSU12_RS06785 SM00987 UreE urease accessory protein, C-terminal domain SSU12_RS06825 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06860 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS06870 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06880 SM00235 Zinc-dependent metalloprotease SSU12_RS06890 SM00849 Metallo-beta-lactamase superfamily SSU12_RS06905 SM00382 ATPases associated with a variety of cellular activities SSU12_RS06930 SM01061 CAT RNA binding domain SSU12_RS06945 SM00028 Tetratricopeptide repeats SSU12_RS06980 SM01192 SSU12_RS06980 SSU12_RS06980 SM01193 SSU12_RS06980 SSU12_RS07015 SM00387 Histidine kinase-like ATPases SSU12_RS07015 SM00433 TopoisomeraseII SSU12_RS07040 SM00885 D5 N terminal like SSU12_RS07105 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS07145 SM00830 Chorismate mutase type II SSU12_RS07160 SM00287 Bacterial SH3 domain homologues SSU12_RS07235 SM00495 Chitin-binding domain type 3 SSU12_RS07275 SM00507 HNH nucleases SSU12_RS07400 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS07405 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS07450 SM00382 ATPases associated with a variety of cellular activities SSU12_RS07455 SM00382 ATPases associated with a variety of cellular activities SSU12_RS07490 SM00642 Alpha-amylase domain SSU12_RS07495 SM00642 Alpha-amylase domain SSU12_RS07520 SM00342 helix_turn_helix, arabinose operon control protein SSU12_RS07580 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SSU12_RS07585 SM00487 DEAD-like helicases superfamily SSU12_RS07585 SM00490 helicase superfamily c-terminal domain SSU12_RS07600 SM00365 Leucine-rich repeat, SDS22-like subfamily SSU12_RS07640 SM01022 SSU12_RS07640 SSU12_RS07675 SM01321 SSU12_RS07675 SSU12_RS07685 SM00382 ATPases associated with a variety of cellular activities SSU12_RS07690 SM00387 Histidine kinase-like ATPases SSU12_RS07695 SM00448 cheY-homologous receiver domain SSU12_RS07695 SM00862 Transcriptional regulatory protein, C terminal SSU12_RS07720 SM00382 ATPases associated with a variety of cellular activities SSU12_RS07725 SM00347 helix_turn_helix multiple antibiotic resistance protein SSU12_RS07775 SM00731 SprT homologues. SSU12_RS07855 SM00382 ATPases associated with a variety of cellular activities SSU12_RS07885 SM00487 DEAD-like helicases superfamily SSU12_RS07885 SM00490 helicase superfamily c-terminal domain SSU12_RS07900 SM01321 SSU12_RS07900 SSU12_RS07905 SM00855 Phosphoglycerate mutase family SSU12_RS07940 SM00411 bacterial (prokaryotic) histone like domain SSU12_RS07970 SM00363 S4 RNA-binding domain SSU12_RS08000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SSU12_RS08000 SM00387 Histidine kinase-like ATPases SSU12_RS08000 SM00388 His Kinase A (phosphoacceptor) domain SSU12_RS08005 SM00448 cheY-homologous receiver domain SSU12_RS08005 SM00862 Transcriptional regulatory protein, C terminal SSU12_RS08015 SM00327 von Willebrand factor (vWF) type A domain SSU12_RS08030 SM01131 SSU12_RS08030 SSU12_RS08045 SM01091 Transporter associated domain SSU12_RS08050 SM00382 ATPases associated with a variety of cellular activities SSU12_RS08110 SM00450 Rhodanese Homology Domain SSU12_RS08120 SM00421 helix_turn_helix, Lux Regulon SSU12_RS08120 SM00448 cheY-homologous receiver domain SSU12_RS08135 SM00382 ATPases associated with a variety of cellular activities SSU12_RS08150 SM00226 Low molecular weight phosphatase family SSU12_RS08155 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. SSU12_RS08165 SM00014 Acid phosphatase homologues SSU12_RS08185 SM01234 SSU12_RS08185 SSU12_RS08190 SM00363 S4 RNA-binding domain SSU12_RS08255 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSU12_RS08295 SM00487 DEAD-like helicases superfamily SSU12_RS08295 SM00490 helicase superfamily c-terminal domain SSU12_RS08340 SM00448 cheY-homologous receiver domain SSU12_RS08340 SM00862 Transcriptional regulatory protein, C terminal SSU12_RS08345 SM01350 SSU12_RS08345 SSU12_RS08365 SM00487 DEAD-like helicases superfamily SSU12_RS08365 SM00490 helicase superfamily c-terminal domain SSU12_RS08380 SM00740 SSU12_RS08380 SSU12_RS08395 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS08440 SM00900 SSU12_RS08440 SSU12_RS08505 SM00873 B3/4 domain SSU12_RS08515 SM00382 ATPases associated with a variety of cellular activities SSU12_RS08515 SM00930 SSU12_RS08515 SSU12_RS08590 SM00487 DEAD-like helicases superfamily SSU12_RS08635 SM00878 Biotin carboxylase C-terminal domain SSU12_RS08650 SM00825 Beta-ketoacyl synthase SSU12_RS08655 SM00822 SSU12_RS08655 SSU12_RS08660 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SSU12_RS08680 SM00347 helix_turn_helix multiple antibiotic resistance protein SSU12_RS08705 SM01005 Alanine racemase, C-terminal domain SSU12_RS08715 SM00957 SecA DEAD-like domain SSU12_RS08715 SM00958 SecA preprotein cross-linking domain SSU12_RS08735 SM00640 Glycosyl hydrolases family 32 SSU12_RS08740 SM00354 helix_turn _helix lactose operon repressor SSU12_RS08755 SM00841 Elongation factor P, C-terminal SSU12_RS08755 SM01185 SSU12_RS08755 SSU12_RS08765 SM00382 ATPases associated with a variety of cellular activities SSU12_RS08825 SM00861 Transketolase, pyrimidine binding domain SSU12_RS08870 SM00316 Ribosomal protein S1-like RNA-binding domain SSU12_RS08870 SM00322 K homology RNA-binding domain SSU12_RS08895 SM00382 ATPases associated with a variety of cellular activities SSU12_RS08925 SM01120 SSU12_RS08925 SSU12_RS08925 SM01121 SSU12_RS08925 SSU12_RS08950 SM00382 ATPases associated with a variety of cellular activities SSU12_RS08955 SM00382 ATPases associated with a variety of cellular activities SSU12_RS08965 SM00936 Penicillin-binding protein 5, C-terminal domain SSU12_RS08990 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09010 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS09015 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09025 SM00244 prohibitin homologues SSU12_RS09110 SM00967 RNA 2'-O ribose methyltransferase substrate binding SSU12_RS09115 SM00740 SSU12_RS09115 SSU12_RS09135 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09145 SM00342 helix_turn_helix, arabinose operon control protein SSU12_RS09145 SM00448 cheY-homologous receiver domain SSU12_RS09195 SM01149 SSU12_RS09195 SSU12_RS09205 SM01208 SSU12_RS09205 SSU12_RS09215 SM00840 SSU12_RS09215 SSU12_RS09235 SM00316 Ribosomal protein S1-like RNA-binding domain SSU12_RS09235 SM00322 K homology RNA-binding domain SSU12_RS09270 SM01387 SSU12_RS09270 SSU12_RS09290 SM00363 S4 RNA-binding domain SSU12_RS09330 SM01329 SSU12_RS09330 SSU12_RS09335 SM00917 LeuA allosteric (dimerisation) domain SSU12_RS09360 SM00479 SSU12_RS09360 SSU12_RS09360 SM00481 DNA polymerase alpha chain like domain SSU12_RS09380 SM01120 SSU12_RS09380 SSU12_RS09415 SM01323 SSU12_RS09415 SSU12_RS09420 SM00788 Adenylosuccinate synthetase SSU12_RS09460 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09460 SM01086 C-terminal, D2-small domain, of ClpB protein SSU12_RS09505 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SSU12_RS09505 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SSU12_RS09555 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SSU12_RS09580 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09590 SM00530 Helix-turn-helix XRE-family like proteins SSU12_RS09610 SM00650 Ribosomal RNA adenine dimethylases SSU12_RS09650 SM00493 SSU12_RS09650 SSU12_RS09665 SM00393 Putative single-stranded nucleic acids-binding domain SSU12_RS09665 SM01245 SSU12_RS09665 SSU12_RS09735 SM00850 LytTr DNA-binding domain SSU12_RS09745 SM00947 Carbonic anhydrase SSU12_RS09750 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09755 SM00855 Phosphoglycerate mutase family SSU12_RS09765 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09770 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09775 SM00347 helix_turn_helix multiple antibiotic resistance protein SSU12_RS09840 SM00861 Transketolase, pyrimidine binding domain SSU12_RS09860 SM01007 Class II Aldolase and Adducin N-terminal domain SSU12_RS09870 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SSU12_RS09890 SM00642 Alpha-amylase domain SSU12_RS09895 SM00354 helix_turn _helix lactose operon repressor SSU12_RS09900 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09910 SM00062 Bacterial periplasmic substrate-binding proteins SSU12_RS09980 SM00382 ATPases associated with a variety of cellular activities SSU12_RS09995 SM00529 Helix-turn-helix diphteria tox regulatory element SSU12_RS09995 SM00899 SSU12_RS09995 SSU12_RS10030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SSU12_RS10030 SM00954 Region found in RelA / SpoT proteins SSU12_RS10060 SM01022 SSU12_RS10060 SSU12_RS10070 SM00382 ATPases associated with a variety of cellular activities SSU12_RS10125 SM00850 LytTr DNA-binding domain SSU12_RS10130 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SSU12_RS10130 SM00534 ATPase domain of DNA mismatch repair MUTS family SSU12_RS10140 SM00836 DALR anticodon binding domain SSU12_RS10140 SM01016 Arginyl tRNA synthetase N terminal dom SSU12_RS10145 SM00287 Bacterial SH3 domain homologues SSU12_RS10185 SM00354 helix_turn _helix lactose operon repressor SSU12_RS10190 SM00642 Alpha-amylase domain SSU12_RS10225 SM01217 SSU12_RS10225 SSU12_RS10235 SM01217 SSU12_RS10235 SSU12_RS10240 SM00448 cheY-homologous receiver domain SSU12_RS10240 SM00850 LytTr DNA-binding domain SSU12_RS10265 SM00363 S4 RNA-binding domain SSU12_RS10265 SM01390 SSU12_RS10265 SSU12_RS10295 SM01228 SSU12_RS10295 SSU12_RS10340 SM00257 Lysin motif SSU12_RS10350 SM00382 ATPases associated with a variety of cellular activities SSU12_RS10355 SM00382 ATPases associated with a variety of cellular activities SSU12_RS10390 SM00116 Domain in cystathionine beta-synthase and other proteins. SSU12_RS10390 SM01240 SSU12_RS10390 SSU12_RS10405 SM00382 ATPases associated with a variety of cellular activities SSU12_RS10440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SSU12_RS10445 SM00470 ParB-like nuclease domain