locus-tag class description NLY35_RS00005 PF00308 Bacterial dnaA protein NLY35_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix NLY35_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NLY35_RS00010 PF02767 DNA polymerase III beta subunit, central domain NLY35_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NLY35_RS00025 PF01381 Helix-turn-helix NLY35_RS00030 PF01926 50S ribosome-binding GTPase NLY35_RS00030 PF06071 Protein of unknown function (DUF933) NLY35_RS00035 PF01195 Peptidyl-tRNA hydrolase NLY35_RS00040 PF17757 UvrB interaction domain NLY35_RS00040 PF03461 TRCF domain NLY35_RS00040 PF00271 Helicase conserved C-terminal domain NLY35_RS00040 PF00270 DEAD/DEAH box helicase NLY35_RS00040 PF02559 CarD-like/TRCF domain NLY35_RS00045 PF01479 S4 domain NLY35_RS00065 PF01171 PP-loop family NLY35_RS00070 PF00156 Phosphoribosyl transferase domain NLY35_RS00075 PF00004 ATPase family associated with various cellular activities (AAA) NLY35_RS00075 PF17862 AAA+ lid domain NLY35_RS00075 PF06480 FtsH Extracellular NLY35_RS00075 PF01434 Peptidase family M41 NLY35_RS00190 PF04085 rod shape-determining protein MreC NLY35_RS00205 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NLY35_RS00205 PF14572 Phosphoribosyl synthetase-associated domain NLY35_RS00210 PF00155 Aminotransferase class I and II NLY35_RS00215 PF02565 Recombination protein O C terminal NLY35_RS00215 PF11967 Recombination protein O N terminal NLY35_RS00220 PF02504 Fatty acid synthesis protein NLY35_RS00225 PF00550 Phosphopantetheine attachment site NLY35_RS00230 PF01259 SAICAR synthetase NLY35_RS00235 PF00586 AIR synthase related protein, N-terminal domain NLY35_RS00235 PF02769 AIR synthase related protein, C-terminal domain NLY35_RS00235 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NLY35_RS00240 PF00156 Phosphoribosyl transferase domain NLY35_RS00240 PF13537 Glutamine amidotransferase domain NLY35_RS00245 PF00586 AIR synthase related protein, N-terminal domain NLY35_RS00245 PF02769 AIR synthase related protein, C-terminal domain NLY35_RS00250 PF00551 Formyl transferase NLY35_RS00255 PF01808 AICARFT/IMPCHase bienzyme NLY35_RS00255 PF02142 MGS-like domain NLY35_RS00260 PF02086 D12 class N6 adenine-specific DNA methyltransferase NLY35_RS00265 PF01555 DNA methylase NLY35_RS00270 PF04556 DpnII restriction endonuclease NLY35_RS00275 PF04556 DpnII restriction endonuclease NLY35_RS00280 PF02844 Phosphoribosylglycinamide synthetase, N domain NLY35_RS00280 PF02843 Phosphoribosylglycinamide synthetase, C domain NLY35_RS00280 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NLY35_RS00285 PF00731 AIR carboxylase NLY35_RS00290 PF02222 ATP-grasp domain NLY35_RS00290 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NLY35_RS00300 PF10397 Adenylosuccinate lyase C-terminus NLY35_RS00300 PF00206 Lyase NLY35_RS00305 PF00005 ABC transporter NLY35_RS00335 PF05491 RuvB C-terminal winged helix domain NLY35_RS00335 PF05496 Holliday junction DNA helicase RuvB P-loop domain NLY35_RS00335 PF17864 RuvB AAA lid domain NLY35_RS00345 PF13419 Haloacid dehalogenase-like hydrolase NLY35_RS00360 PF02875 Mur ligase family, glutamate ligase domain NLY35_RS00360 PF08245 Mur ligase middle domain NLY35_RS00370 PF01119 DNA mismatch repair protein, C-terminal domain NLY35_RS00370 PF08676 MutL C terminal dimerisation domain NLY35_RS00375 PF01330 RuvA N terminal domain NLY35_RS00375 PF07499 RuvA, C-terminal domain NLY35_RS00380 PF00958 GMP synthase C terminal domain NLY35_RS00380 PF03352 Methyladenine glycosylase NLY35_RS00380 PF13302 Acetyltransferase (GNAT) domain NLY35_RS00380 PF00117 Glutamine amidotransferase class-I NLY35_RS00380 PF13673 Acetyltransferase (GNAT) domain NLY35_RS00385 PF02464 Competence-damaged protein NLY35_RS00385 PF18146 Damage-inducible protein CinA KH domain NLY35_RS00385 PF00994 Probable molybdopterin binding domain NLY35_RS00390 PF00154 recA bacterial DNA recombination protein NLY35_RS00395 PF03960 ArsC family NLY35_RS00400 PF06135 IreB regulatory phosphoprotein NLY35_RS00405 PF03652 Holliday junction resolvase NLY35_RS00410 PF06949 Protein of unknown function (DUF1292) NLY35_RS00425 PF00338 Ribosomal protein S10p/S20e NLY35_RS00430 PF00297 Ribosomal protein L3 NLY35_RS00435 PF00573 Ribosomal protein L4/L1 family NLY35_RS00440 PF00276 Ribosomal protein L23 NLY35_RS00445 PF00181 Ribosomal Proteins L2, RNA binding domain NLY35_RS00445 PF03947 Ribosomal Proteins L2, C-terminal domain NLY35_RS00450 PF00203 Ribosomal protein S19 NLY35_RS00455 PF00237 Ribosomal protein L22p/L17e NLY35_RS00460 PF07650 KH domain NLY35_RS00460 PF00189 Ribosomal protein S3, C-terminal domain NLY35_RS00465 PF00252 Ribosomal protein L16p/L10e NLY35_RS00470 PF00831 Ribosomal L29 protein NLY35_RS00475 PF00366 Ribosomal protein S17 NLY35_RS00480 PF00238 Ribosomal protein L14p/L23e NLY35_RS00485 PF00467 KOW motif NLY35_RS00485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NLY35_RS00490 PF00281 Ribosomal protein L5 NLY35_RS00490 PF00673 ribosomal L5P family C-terminus NLY35_RS00495 PF00253 Ribosomal protein S14p/S29e NLY35_RS00500 PF00410 Ribosomal protein S8 NLY35_RS00505 PF00347 Ribosomal protein L6 NLY35_RS00510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NLY35_RS00515 PF00333 Ribosomal protein S5, N-terminal domain NLY35_RS00515 PF03719 Ribosomal protein S5, C-terminal domain NLY35_RS00520 PF00327 Ribosomal protein L30p/L7e NLY35_RS00525 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NLY35_RS00530 PF00344 SecY translocase NLY35_RS00540 PF01176 Translation initiation factor 1A / IF-1 NLY35_RS00545 PF00444 Ribosomal protein L36 NLY35_RS00550 PF00416 Ribosomal protein S13/S18 NLY35_RS00555 PF00411 Ribosomal protein S11 NLY35_RS00560 PF01000 RNA polymerase Rpb3/RpoA insert domain NLY35_RS00560 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NLY35_RS00560 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NLY35_RS00565 PF01196 Ribosomal protein L17 NLY35_RS00575 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NLY35_RS00575 PF01348 Type II intron maturase NLY35_RS00670 PF00589 Phage integrase family NLY35_RS00670 PF14659 Phage integrase, N-terminal SAM-like domain NLY35_RS00680 PF18106 Rolling Circle replication initiation protein N-terminal domain NLY35_RS00680 PF02486 Replication initiation factor NLY35_RS00725 PF01047 MarR family NLY35_RS00730 PF00005 ABC transporter NLY35_RS00735 PF00950 ABC 3 transport family NLY35_RS00740 PF01297 Zinc-uptake complex component A periplasmic NLY35_RS00740 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment NLY35_RS00745 PF03965 Penicillinase repressor NLY35_RS00760 PF00579 tRNA synthetases class I (W and Y) NLY35_RS00760 PF01479 S4 domain NLY35_RS00765 PF00905 Penicillin binding protein transpeptidase domain NLY35_RS00765 PF00912 Transglycosylase NLY35_RS00770 PF04565 RNA polymerase Rpb2, domain 3 NLY35_RS00770 PF10385 RNA polymerase beta subunit external 1 domain NLY35_RS00770 PF04563 RNA polymerase beta subunit NLY35_RS00770 PF04560 RNA polymerase Rpb2, domain 7 NLY35_RS00770 PF04561 RNA polymerase Rpb2, domain 2 NLY35_RS00770 PF00562 RNA polymerase Rpb2, domain 6 NLY35_RS00775 PF04997 RNA polymerase Rpb1, domain 1 NLY35_RS00775 PF00623 RNA polymerase Rpb1, domain 2 NLY35_RS00775 PF04983 RNA polymerase Rpb1, domain 3 NLY35_RS00775 PF05000 RNA polymerase Rpb1, domain 4 NLY35_RS00775 PF04998 RNA polymerase Rpb1, domain 5 NLY35_RS00785 PF02016 LD-carboxypeptidase N-terminal domain NLY35_RS00785 PF17676 LD-carboxypeptidase C-terminal domain NLY35_RS00790 PF00437 Type II/IV secretion system protein NLY35_RS00795 PF00482 Type II secretion system (T2SS), protein F NLY35_RS00800 PF07963 Prokaryotic N-terminal methylation motif NLY35_RS00830 PF00871 Acetokinase family NLY35_RS00835 PF07155 ECF-type riboflavin transporter, S component NLY35_RS00840 PF02875 Mur ligase family, glutamate ligase domain NLY35_RS00840 PF08245 Mur ligase middle domain NLY35_RS00845 PF05343 M42 glutamyl aminopeptidase NLY35_RS00855 PF00085 Thioredoxin NLY35_RS00865 PF01588 Putative tRNA binding domain NLY35_RS00865 PF14794 Domain of unknown function (DUF4479) NLY35_RS00875 PF00436 Single-strand binding protein family NLY35_RS00885 PF00166 Chaperonin 10 Kd subunit NLY35_RS00890 PF00118 TCP-1/cpn60 chaperonin family NLY35_RS00895 PF00164 Ribosomal protein S12/S23 NLY35_RS00900 PF00177 Ribosomal protein S7p/S5e NLY35_RS00905 PF00009 Elongation factor Tu GTP binding domain NLY35_RS00905 PF03764 Elongation factor G, domain IV NLY35_RS00905 PF14492 Elongation Factor G, domain II NLY35_RS00905 PF00679 Elongation factor G C-terminus NLY35_RS00905 PF03144 Elongation factor Tu domain 2 NLY35_RS00910 PF05649 Peptidase family M13 NLY35_RS00910 PF01431 Peptidase family M13 NLY35_RS00915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NLY35_RS00915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NLY35_RS00920 PF00162 Phosphoglycerate kinase NLY35_RS00925 PF06081 Aromatic acid exporter family member 1 NLY35_RS00930 PF13411 MerR HTH family regulatory protein NLY35_RS00935 PF00120 Glutamine synthetase, catalytic domain NLY35_RS00935 PF03951 Glutamine synthetase, beta-Grasp domain NLY35_RS00940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NLY35_RS00940 PF00753 Metallo-beta-lactamase superfamily NLY35_RS00940 PF17770 Ribonuclease J C-terminal domain NLY35_RS00945 PF07288 Protein of unknown function (DUF1447) NLY35_RS00950 PF00814 Glycoprotease family NLY35_RS00960 PF00814 Glycoprotease family NLY35_RS00965 PF12833 Helix-turn-helix domain NLY35_RS00965 PF02311 AraC-like ligand binding domain NLY35_RS00970 PF01547 Bacterial extracellular solute-binding protein NLY35_RS00975 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS00980 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS00985 PF16875 Glycosyl hydrolase family 36 N-terminal domain NLY35_RS00985 PF16874 Glycosyl hydrolase family 36 C-terminal domain NLY35_RS01000 PF03601 Conserved hypothetical protein 698 NLY35_RS01010 PF13732 Domain of unknown function (DUF4162) NLY35_RS01010 PF00005 ABC transporter NLY35_RS01025 PF00232 Glycosyl hydrolase family 1 NLY35_RS01030 PF04394 Protein of unknown function, DUF536 NLY35_RS01030 PF08279 HTH domain NLY35_RS01035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NLY35_RS01040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS01045 PF03611 PTS system sugar-specific permease component NLY35_RS01050 PF00456 Transketolase, thiamine diphosphate binding domain NLY35_RS01055 PF02779 Transketolase, pyrimidine binding domain NLY35_RS01055 PF02780 Transketolase, C-terminal domain NLY35_RS01055 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NLY35_RS01060 PF03009 Glycerophosphoryl diester phosphodiesterase family NLY35_RS01065 PF02575 YbaB/EbfC DNA-binding family NLY35_RS01070 PF01380 SIS domain NLY35_RS01080 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NLY35_RS01080 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain NLY35_RS01080 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal NLY35_RS01090 PF00144 Beta-lactamase NLY35_RS01100 PF01476 LysM domain NLY35_RS01100 PF05257 CHAP domain NLY35_RS01105 PF01228 Glycine radical NLY35_RS01105 PF02901 Pyruvate formate lyase-like NLY35_RS01110 PF00817 impB/mucB/samB family NLY35_RS01110 PF11799 impB/mucB/samB family C-terminal domain NLY35_RS01110 PF11798 IMS family HHH motif NLY35_RS01120 PF13460 NAD(P)H-binding NLY35_RS01125 PF00294 pfkB family carbohydrate kinase NLY35_RS01140 PF00480 ROK family NLY35_RS01145 PF02378 Phosphotransferase system, EIIC NLY35_RS01165 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS01170 PF00005 ABC transporter NLY35_RS01180 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NLY35_RS01185 PF00403 Heavy-metal-associated domain NLY35_RS01190 PF00403 Heavy-metal-associated domain NLY35_RS01200 PF00403 Heavy-metal-associated domain NLY35_RS01205 PF14490 Helix-hairpin-helix containing domain NLY35_RS01205 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NLY35_RS01205 PF13538 UvrD-like helicase C-terminal domain NLY35_RS01210 PF10502 Signal peptidase, peptidase S26 NLY35_RS01215 PF11858 Domain of unknown function (DUF3378) NLY35_RS01215 PF01351 Ribonuclease HII NLY35_RS01220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NLY35_RS01220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NLY35_RS01230 PF00128 Alpha amylase, catalytic domain NLY35_RS01230 PF16657 Maltogenic Amylase, C-terminal domain NLY35_RS01235 PF00367 phosphotransferase system, EIIB NLY35_RS01235 PF02378 Phosphotransferase system, EIIC NLY35_RS01240 PF00392 Bacterial regulatory proteins, gntR family NLY35_RS01240 PF07702 UTRA domain NLY35_RS01255 PF00488 MutS domain V NLY35_RS01255 PF01713 Smr domain NLY35_RS01280 PF00085 Thioredoxin NLY35_RS01285 PF13193 AMP-binding enzyme C-terminal domain NLY35_RS01285 PF00501 AMP-binding enzyme NLY35_RS01290 PF01641 SelR domain NLY35_RS01290 PF01625 Peptide methionine sulfoxide reductase NLY35_RS01345 PF00005 ABC transporter NLY35_RS01350 PF01235 Sodium:alanine symporter family NLY35_RS01355 PF00924 Mechanosensitive ion channel NLY35_RS01365 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NLY35_RS01365 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NLY35_RS01370 PF01180 Dihydroorotate dehydrogenase NLY35_RS01375 PF09587 Bacterial capsule synthesis protein PGA_cap NLY35_RS01395 PF00005 ABC transporter NLY35_RS01400 PF00440 Bacterial regulatory proteins, tetR family NLY35_RS01425 PF03788 LrgA family NLY35_RS01430 PF04172 LrgB-like family NLY35_RS01435 PF01226 Formate/nitrite transporter NLY35_RS01440 PF00230 Major intrinsic protein NLY35_RS01445 PF05872 Bacterial protein of unknown function (DUF853) NLY35_RS01450 PF00293 NUDIX domain NLY35_RS01470 PF00471 Ribosomal protein L33 NLY35_RS01475 PF01783 Ribosomal L32p protein family NLY35_RS01485 PF01548 Transposase NLY35_RS01485 PF02371 Transposase IS116/IS110/IS902 family NLY35_RS01490 PF03129 Anticodon binding domain NLY35_RS01490 PF13393 Histidyl-tRNA synthetase NLY35_RS01495 PF08240 Alcohol dehydrogenase GroES-like domain NLY35_RS01495 PF00107 Zinc-binding dehydrogenase NLY35_RS01500 PF00465 Iron-containing alcohol dehydrogenase NLY35_RS01500 PF00171 Aldehyde dehydrogenase family NLY35_RS01505 PF14821 Threonine synthase N terminus NLY35_RS01505 PF00291 Pyridoxal-phosphate dependent enzyme NLY35_RS01510 PF00664 ABC transporter transmembrane region NLY35_RS01510 PF00005 ABC transporter NLY35_RS01515 PF00664 ABC transporter transmembrane region NLY35_RS01515 PF00005 ABC transporter NLY35_RS01530 PF00005 ABC transporter NLY35_RS01535 PF01554 MatE NLY35_RS01540 PF10509 Galactokinase galactose-binding signature NLY35_RS01540 PF08544 GHMP kinases C terminal NLY35_RS01540 PF00288 GHMP kinases N terminal domain NLY35_RS01550 PF00288 GHMP kinases N terminal domain NLY35_RS01550 PF08544 GHMP kinases C terminal NLY35_RS01555 PF01070 FMN-dependent dehydrogenase NLY35_RS01560 PF00005 ABC transporter NLY35_RS01560 PF00664 ABC transporter transmembrane region NLY35_RS01565 PF00664 ABC transporter transmembrane region NLY35_RS01565 PF00005 ABC transporter NLY35_RS01575 PF05167 Uncharacterised ACR (DUF711) NLY35_RS01585 PF01628 HrcA protein C terminal domain NLY35_RS01585 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding NLY35_RS01590 PF01025 GrpE NLY35_RS01595 PF00012 Hsp70 protein NLY35_RS01600 PF00226 DnaJ domain NLY35_RS01600 PF01556 DnaJ C terminal domain NLY35_RS01600 PF00684 DnaJ central domain NLY35_RS01605 PF03099 Biotin/lipoate A/B protein ligase family NLY35_RS01610 PF01425 Amidase NLY35_RS01615 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS01620 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS01635 PF13443 Cro/C1-type HTH DNA-binding domain NLY35_RS01650 PF01475 Ferric uptake regulator family NLY35_RS01655 PF01416 tRNA pseudouridine synthase NLY35_RS01670 PF04260 Protein of unknown function (DUF436) NLY35_RS01690 PF12697 Alpha/beta hydrolase family NLY35_RS01700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NLY35_RS01700 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS01720 PF05697 Bacterial trigger factor protein (TF) NLY35_RS01720 PF05698 Bacterial trigger factor protein (TF) C-terminus NLY35_RS01720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NLY35_RS01745 PF05066 HB1, ASXL, restriction endonuclease HTH domain NLY35_RS01750 PF00117 Glutamine amidotransferase class-I NLY35_RS01750 PF06418 CTP synthase N-terminus NLY35_RS01765 PF01116 Fructose-bisphosphate aldolase class-II NLY35_RS01770 PF00830 Ribosomal L28 family NLY35_RS01810 PF00270 DEAD/DEAH box helicase NLY35_RS01810 PF00271 Helicase conserved C-terminal domain NLY35_RS01810 PF17191 RecG wedge domain NLY35_RS01815 PF01610 Transposase NLY35_RS01815 PF13683 Integrase core domain NLY35_RS01820 PF17763 Glutaminase/Asparaginase C-terminal domain NLY35_RS01820 PF00710 Asparaginase, N-terminal NLY35_RS01830 PF00582 Universal stress protein family NLY35_RS01835 PF00155 Aminotransferase class I and II NLY35_RS01840 PF06018 CodY GAF-like domain NLY35_RS01840 PF08222 CodY helix-turn-helix domain NLY35_RS01845 PF00857 Isochorismatase family NLY35_RS01855 PF01245 Ribosomal protein L19 NLY35_RS01865 PF02686 Glu-tRNAGln amidotransferase C subunit NLY35_RS01870 PF01425 Amidase NLY35_RS01875 PF02934 GatB/GatE catalytic domain NLY35_RS01875 PF02637 GatB domain NLY35_RS01885 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS01890 PF10509 Galactokinase galactose-binding signature NLY35_RS01890 PF08544 GHMP kinases C terminal NLY35_RS01890 PF00288 GHMP kinases N terminal domain NLY35_RS01895 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain NLY35_RS01895 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain NLY35_RS01900 PF00892 EamA-like transporter family NLY35_RS01905 PF03932 CutC family NLY35_RS01915 PF13419 Haloacid dehalogenase-like hydrolase NLY35_RS01920 PF01926 50S ribosome-binding GTPase NLY35_RS01925 PF01985 CRS1 / YhbY (CRM) domain NLY35_RS01930 PF01467 Cytidylyltransferase-like NLY35_RS01935 PF01966 HD domain NLY35_RS01950 PF00857 Isochorismatase family NLY35_RS01960 PF13649 Methyltransferase domain NLY35_RS01965 PF05636 HIGH Nucleotidyl Transferase NLY35_RS01980 PF07739 TipAS antibiotic-recognition domain NLY35_RS01980 PF13411 MerR HTH family regulatory protein NLY35_RS01985 PF02388 FemAB family NLY35_RS01995 PF01327 Polypeptide deformylase NLY35_RS02000 PF10431 C-terminal, D2-small domain, of ClpB protein NLY35_RS02000 PF00004 ATPase family associated with various cellular activities (AAA) NLY35_RS02000 PF17871 AAA lid domain NLY35_RS02000 PF07724 AAA domain (Cdc48 subfamily) NLY35_RS02005 PF02446 4-alpha-glucanotransferase NLY35_RS02010 PF00343 Carbohydrate phosphorylase NLY35_RS02020 PF03372 Endonuclease/Exonuclease/phosphatase family NLY35_RS02025 PF02378 Phosphotransferase system, EIIC NLY35_RS02025 PF00367 phosphotransferase system, EIIB NLY35_RS02025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NLY35_RS02040 PF01709 Transcriptional regulator NLY35_RS02050 PF07155 ECF-type riboflavin transporter, S component NLY35_RS02060 PF17773 UPF0176 acylphosphatase like domain NLY35_RS02060 PF12368 Rhodanase C-terminal NLY35_RS02060 PF00581 Rhodanese-like domain NLY35_RS02070 PF12558 ATP-binding cassette cobalt transporter NLY35_RS02070 PF00005 ABC transporter NLY35_RS02080 PF00313 'Cold-shock' DNA-binding domain NLY35_RS02085 PF02527 rRNA small subunit methyltransferase G NLY35_RS02090 PF00905 Penicillin binding protein transpeptidase domain NLY35_RS02090 PF00912 Transglycosylase NLY35_RS02095 PF03838 Recombination protein U NLY35_RS02100 PF06908 YspA SLOG family NLY35_RS02105 PF05103 DivIVA protein NLY35_RS02115 PF02926 THUMP domain NLY35_RS02115 PF01170 Putative RNA methylase family UPF0020 NLY35_RS02120 PF18041 MapZ extracellular domain 1 NLY35_RS02120 PF18708 MapZ extracellular C-terminal domain 2 NLY35_RS02125 PF02664 S-Ribosylhomocysteinase (LuxS) NLY35_RS02130 PF00013 KH domain NLY35_RS02130 PF01966 HD domain NLY35_RS02130 PF12072 Domain of unknown function (DUF3552) NLY35_RS02135 PF00625 Guanylate kinase NLY35_RS02140 PF01192 RNA polymerase Rpb6 NLY35_RS02145 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NLY35_RS02145 PF04851 Type III restriction enzyme, res subunit NLY35_RS02145 PF17764 3′ DNA-binding domain (3′BD) NLY35_RS02145 PF00271 Helicase conserved C-terminal domain NLY35_RS02145 PF18074 Primosomal protein N C-terminal domain NLY35_RS02150 PF02911 Formyl transferase, C-terminal domain NLY35_RS02150 PF00551 Formyl transferase NLY35_RS02155 PF01189 16S rRNA methyltransferase RsmB/F NLY35_RS02155 PF01029 NusB family NLY35_RS02165 PF03793 PASTA domain NLY35_RS02165 PF00069 Protein kinase domain NLY35_RS02175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS02175 PF07730 Histidine kinase NLY35_RS02180 PF00072 Response regulator receiver domain NLY35_RS02180 PF00196 Bacterial regulatory proteins, luxR family NLY35_RS02185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NLY35_RS02190 PF00575 S1 RNA binding domain NLY35_RS02195 PF00291 Pyridoxal-phosphate dependent enzyme NLY35_RS02200 PF01205 Uncharacterized protein family UPF0029 NLY35_RS02200 PF09186 Domain of unknown function (DUF1949) NLY35_RS02205 PF04851 Type III restriction enzyme, res subunit NLY35_RS02205 PF00271 Helicase conserved C-terminal domain NLY35_RS02215 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NLY35_RS02215 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NLY35_RS02295 PF05958 tRNA (Uracil-5-)-methyltransferase NLY35_RS02295 PF01938 TRAM domain NLY35_RS02300 PF02631 RecX family NLY35_RS02305 PF04167 Protein of unknown function (DUF402) NLY35_RS02315 PF07702 UTRA domain NLY35_RS02315 PF00392 Bacterial regulatory proteins, gntR family NLY35_RS02320 PF07702 UTRA domain NLY35_RS02320 PF00392 Bacterial regulatory proteins, gntR family NLY35_RS02325 PF01301 Glycosyl hydrolases family 35 NLY35_RS02330 PF03830 PTS system sorbose subfamily IIB component NLY35_RS02340 PF03613 PTS system mannose/fructose/sorbose family IID component NLY35_RS02350 PF01263 Aldose 1-epimerase NLY35_RS02385 PF00133 tRNA synthetases class I (I, L, M and V) NLY35_RS02385 PF08264 Anticodon-binding domain of tRNA NLY35_RS02385 PF10458 Valyl tRNA synthetase tRNA binding arm NLY35_RS02400 PF00293 NUDIX domain NLY35_RS02410 PF03590 Aspartate-ammonia ligase NLY35_RS02415 PF00679 Elongation factor G C-terminus NLY35_RS02415 PF14492 Elongation Factor G, domain II NLY35_RS02415 PF00009 Elongation factor Tu GTP binding domain NLY35_RS02415 PF03144 Elongation factor Tu domain 2 NLY35_RS02430 PF10502 Signal peptidase, peptidase S26 NLY35_RS02460 PF02875 Mur ligase family, glutamate ligase domain NLY35_RS02460 PF08245 Mur ligase middle domain NLY35_RS02465 PF03033 Glycosyltransferase family 28 N-terminal domain NLY35_RS02465 PF04101 Glycosyltransferase family 28 C-terminal domain NLY35_RS02470 PF08478 POTRA domain, FtsQ-type NLY35_RS02475 PF11983 Membrane-attachment and polymerisation-promoting switch NLY35_RS02475 PF02491 SHS2 domain inserted in FTSA NLY35_RS02480 PF12327 FtsZ family, C-terminal domain NLY35_RS02480 PF00091 Tubulin/FtsZ family, GTPase domain NLY35_RS02485 PF01168 Alanine racemase, N-terminal domain NLY35_RS02490 PF04472 Cell division protein SepF NLY35_RS02505 PF05103 DivIVA protein NLY35_RS02515 PF08264 Anticodon-binding domain of tRNA NLY35_RS02515 PF00133 tRNA synthetases class I (I, L, M and V) NLY35_RS02525 PF00300 Histidine phosphatase superfamily (branch 1) NLY35_RS02525 PF00293 NUDIX domain NLY35_RS02530 PF17871 AAA lid domain NLY35_RS02530 PF07724 AAA domain (Cdc48 subfamily) NLY35_RS02530 PF00004 ATPase family associated with various cellular activities (AAA) NLY35_RS02530 PF10431 C-terminal, D2-small domain, of ClpB protein NLY35_RS02535 PF08796 Protein of unknown function (DUF1797) NLY35_RS02540 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS02545 PF00005 ABC transporter NLY35_RS02550 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NLY35_RS02550 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NLY35_RS02560 PF10502 Signal peptidase, peptidase S26 NLY35_RS02585 PF13411 MerR HTH family regulatory protein NLY35_RS02600 PF16325 Peptidase family U32 C-terminal domain NLY35_RS02600 PF01136 Peptidase family U32 NLY35_RS02610 PF02229 Transcriptional Coactivator p15 (PC4) NLY35_RS02615 PF02632 BioY family NLY35_RS02625 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS02625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLY35_RS02635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NLY35_RS02640 PF00005 ABC transporter NLY35_RS02645 PF02687 FtsX-like permease family NLY35_RS02645 PF12704 MacB-like periplasmic core domain NLY35_RS02665 PF00152 tRNA synthetases class II (D, K and N) NLY35_RS02665 PF01336 OB-fold nucleic acid binding domain NLY35_RS02675 PF04073 Aminoacyl-tRNA editing domain NLY35_RS02685 PF09515 Thiamine transporter protein (Thia_YuaJ) NLY35_RS02705 PF01098 Cell cycle protein NLY35_RS02710 PF00311 Phosphoenolpyruvate carboxylase NLY35_RS02725 PF00009 Elongation factor Tu GTP binding domain NLY35_RS02725 PF03144 Elongation factor Tu domain 2 NLY35_RS02725 PF03143 Elongation factor Tu C-terminal domain NLY35_RS02735 PF01381 Helix-turn-helix NLY35_RS02745 PF00121 Triosephosphate isomerase NLY35_RS02760 PF01966 HD domain NLY35_RS02775 PF00690 Cation transporter/ATPase, N-terminus NLY35_RS02775 PF00689 Cation transporting ATPase, C-terminus NLY35_RS02790 PF04892 VanZ like family NLY35_RS02805 PF00005 ABC transporter NLY35_RS02810 PF02687 FtsX-like permease family NLY35_RS02810 PF18075 FtsX extracellular domain NLY35_RS02820 PF07670 Nucleoside recognition NLY35_RS02820 PF07664 Ferrous iron transport protein B C terminus NLY35_RS02820 PF17910 FeoB cytosolic helical domain NLY35_RS02820 PF02421 Ferrous iron transport protein B NLY35_RS02835 PF00005 ABC transporter NLY35_RS02835 PF00664 ABC transporter transmembrane region NLY35_RS02840 PF00664 ABC transporter transmembrane region NLY35_RS02840 PF00005 ABC transporter NLY35_RS02845 PF00654 Voltage gated chloride channel NLY35_RS02850 PF02153 Prephenate dehydrogenase NLY35_RS02850 PF01817 Chorismate mutase type II NLY35_RS02855 PF00253 Ribosomal protein S14p/S29e NLY35_RS02860 PF00258 Flavodoxin NLY35_RS02865 PF02272 DHHA1 domain NLY35_RS02865 PF01368 DHH family NLY35_RS02870 PF02424 ApbE family NLY35_RS02875 PF01197 Ribosomal protein L31 NLY35_RS02880 PF01098 Cell cycle protein NLY35_RS02885 PF01965 DJ-1/PfpI family NLY35_RS02890 PF01751 Toprim domain NLY35_RS02890 PF00986 DNA gyrase B subunit, carboxyl terminus NLY35_RS02890 PF00204 DNA gyrase B NLY35_RS02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS02895 PF06160 Septation ring formation regulator, EzrA NLY35_RS02910 PF02595 Glycerate kinase family NLY35_RS02925 PF00113 Enolase, C-terminal TIM barrel domain NLY35_RS02925 PF03952 Enolase, N-terminal domain NLY35_RS02940 PF13419 Haloacid dehalogenase-like hydrolase NLY35_RS02950 PF10282 Lactonase, 7-bladed beta-propeller NLY35_RS02955 PF01594 AI-2E family transporter NLY35_RS02965 PF03306 Alpha-acetolactate decarboxylase NLY35_RS02970 PF05670 NFACT protein RNA binding domain NLY35_RS02975 PF00874 PRD domain NLY35_RS02975 PF03123 CAT RNA binding domain NLY35_RS02980 PF02378 Phosphotransferase system, EIIC NLY35_RS02980 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NLY35_RS02980 PF00367 phosphotransferase system, EIIB NLY35_RS02985 PF00232 Glycosyl hydrolase family 1 NLY35_RS03000 PF08402 TOBE domain NLY35_RS03000 PF00005 ABC transporter NLY35_RS03015 PF17770 Ribonuclease J C-terminal domain NLY35_RS03015 PF00753 Metallo-beta-lactamase superfamily NLY35_RS03015 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NLY35_RS03020 PF00756 Putative esterase NLY35_RS03035 PF00005 ABC transporter NLY35_RS03035 PF12848 ABC transporter NLY35_RS03035 PF16326 ABC transporter C-terminal domain NLY35_RS03045 PF13847 Methyltransferase domain NLY35_RS03050 PF07685 CobB/CobQ-like glutamine amidotransferase domain NLY35_RS03055 PF08353 Domain of unknown function (DUF1727) NLY35_RS03055 PF08245 Mur ligase middle domain NLY35_RS03060 PF02457 DisA bacterial checkpoint controller nucleotide-binding NLY35_RS03070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLY35_RS03070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLY35_RS03070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLY35_RS03070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLY35_RS03075 PF00005 ABC transporter NLY35_RS03075 PF12848 ABC transporter NLY35_RS03085 PF00375 Sodium:dicarboxylate symporter family NLY35_RS03090 PF01546 Peptidase family M20/M25/M40 NLY35_RS03100 PF03167 Uracil DNA glycosylase superfamily NLY35_RS03110 PF04011 LemA family NLY35_RS03115 PF01145 SPFH domain / Band 7 family NLY35_RS03115 PF15975 Flotillin NLY35_RS03130 PF10396 GTP-binding protein TrmE N-terminus NLY35_RS03130 PF12631 MnmE helical domain NLY35_RS03130 PF01926 50S ribosome-binding GTPase NLY35_RS03160 PF01867 CRISPR associated protein Cas1 NLY35_RS03165 PF09827 CRISPR associated protein Cas2 NLY35_RS03170 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NLY35_RS03175 PF01676 Metalloenzyme superfamily NLY35_RS03185 PF01048 Phosphorylase superfamily NLY35_RS03190 PF01048 Phosphorylase superfamily NLY35_RS03195 PF00343 Carbohydrate phosphorylase NLY35_RS03205 PF04055 Radical SAM superfamily NLY35_RS03205 PF06969 HemN C-terminal domain NLY35_RS03230 PF00145 C-5 cytosine-specific DNA methylase NLY35_RS03285 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NLY35_RS03285 PF01348 Type II intron maturase NLY35_RS03315 PF16364 Cell surface antigen C-terminus NLY35_RS03315 PF17998 Cell surface antigen I/II C2 terminal domain NLY35_RS03315 PF18652 Adhesin P1 N-terminal domain NLY35_RS03315 PF06696 Streptococcal surface antigen repeat NLY35_RS03315 PF08363 Glucan-binding protein C NLY35_RS03315 PF18652 Adhesin P1 N-terminal domain NLY35_RS03315 PF08363 Glucan-binding protein C NLY35_RS03315 PF06696 Streptococcal surface antigen repeat NLY35_RS03315 PF16364 Cell surface antigen C-terminus NLY35_RS03315 PF17998 Cell surface antigen I/II C2 terminal domain NLY35_RS03335 PF01348 Type II intron maturase NLY35_RS03335 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NLY35_RS03345 PF01348 Type II intron maturase NLY35_RS03345 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NLY35_RS03440 PF01381 Helix-turn-helix NLY35_RS03475 PF12848 ABC transporter NLY35_RS03475 PF16326 ABC transporter C-terminal domain NLY35_RS03475 PF00005 ABC transporter NLY35_RS03485 PF00398 Ribosomal RNA adenine dimethylase NLY35_RS03505 PF13610 DDE domain NLY35_RS03510 PF13610 DDE domain NLY35_RS03555 PF03432 Relaxase/Mobilisation nuclease domain NLY35_RS03580 PF12704 MacB-like periplasmic core domain NLY35_RS03580 PF02687 FtsX-like permease family NLY35_RS03580 PF00005 ABC transporter NLY35_RS03615 PF13344 Haloacid dehalogenase-like hydrolase NLY35_RS03615 PF00293 NUDIX domain NLY35_RS03620 PF13344 Haloacid dehalogenase-like hydrolase NLY35_RS03630 PF01165 Ribosomal protein S21 NLY35_RS03635 PF16363 GDP-mannose 4,6 dehydratase NLY35_RS03640 PF02371 Transposase IS116/IS110/IS902 family NLY35_RS03640 PF01548 Transposase NLY35_RS03645 PF01741 Large-conductance mechanosensitive channel, MscL NLY35_RS03650 PF08275 DNA primase catalytic core, N-terminal domain NLY35_RS03650 PF10410 DnaB-helicase binding domain of primase NLY35_RS03650 PF01807 CHC2 zinc finger NLY35_RS03655 PF04545 Sigma-70, region 4 NLY35_RS03655 PF04539 Sigma-70 region 3 NLY35_RS03655 PF04542 Sigma-70 region 2 NLY35_RS03655 PF00140 Sigma-70 factor, region 1.2 NLY35_RS03655 PF03979 Sigma-70 factor, region 1.1 NLY35_RS03660 PF01883 Iron-sulfur cluster assembly protein NLY35_RS03695 PF00962 Adenosine/AMP deaminase NLY35_RS03705 PF00005 ABC transporter NLY35_RS03710 PF07702 UTRA domain NLY35_RS03710 PF00392 Bacterial regulatory proteins, gntR family NLY35_RS03715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NLY35_RS03715 PF02811 PHP domain NLY35_RS03715 PF01336 OB-fold nucleic acid binding domain NLY35_RS03715 PF07733 Bacterial DNA polymerase III alpha NTPase domain NLY35_RS03715 PF14579 Helix-hairpin-helix motif NLY35_RS03720 PF00365 Phosphofructokinase NLY35_RS03725 PF00224 Pyruvate kinase, barrel domain NLY35_RS03725 PF02887 Pyruvate kinase, alpha/beta domain NLY35_RS03730 PF09028 Mac 1 NLY35_RS03740 PF01266 FAD dependent oxidoreductase NLY35_RS03745 PF07859 alpha/beta hydrolase fold NLY35_RS03745 PF13472 GDSL-like Lipase/Acylhydrolase family NLY35_RS03750 PF10502 Signal peptidase, peptidase S26 NLY35_RS03755 PF01380 SIS domain NLY35_RS03760 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS03765 PF00005 ABC transporter NLY35_RS03770 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS03780 PF01979 Amidohydrolase family NLY35_RS03785 PF01791 DeoC/LacD family aldolase NLY35_RS03800 PF02653 Branched-chain amino acid transport system / permease component NLY35_RS03805 PF00005 ABC transporter NLY35_RS03815 PF01761 3-dehydroquinate synthase NLY35_RS03820 PF08501 Shikimate dehydrogenase substrate binding domain NLY35_RS03820 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NLY35_RS03825 PF00793 DAHP synthetase I family NLY35_RS03830 PF00793 DAHP synthetase I family NLY35_RS03840 PF01588 Putative tRNA binding domain NLY35_RS03840 PF09334 tRNA synthetases class I (M) NLY35_RS03850 PF01432 Peptidase family M3 NLY35_RS03850 PF08439 Oligopeptidase F NLY35_RS03865 PF01596 O-methyltransferase NLY35_RS03870 PF13145 PPIC-type PPIASE domain NLY35_RS03880 PF02272 DHHA1 domain NLY35_RS03880 PF01411 tRNA synthetases class II (A) NLY35_RS03880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NLY35_RS03900 PF01381 Helix-turn-helix NLY35_RS03960 PF07470 Glycosyl Hydrolase Family 88 NLY35_RS03965 PF03830 PTS system sorbose subfamily IIB component NLY35_RS03975 PF03613 PTS system mannose/fructose/sorbose family IID component NLY35_RS03995 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS04000 PF00268 Ribonucleotide reductase, small chain NLY35_RS04010 PF02867 Ribonucleotide reductase, barrel domain NLY35_RS04010 PF00317 Ribonucleotide reductase, all-alpha domain NLY35_RS04010 PF08343 Ribonucleotide reductase N-terminal NLY35_RS04015 PF00462 Glutaredoxin NLY35_RS04020 PF00330 Aconitase family (aconitate hydratase) NLY35_RS04020 PF00694 Aconitase C-terminal domain NLY35_RS04025 PF00285 Citrate synthase, C-terminal domain NLY35_RS04030 PF00180 Isocitrate/isopropylmalate dehydrogenase NLY35_RS04040 PF00381 PTS HPr component phosphorylation site NLY35_RS04045 PF05524 PEP-utilising enzyme, N-terminal NLY35_RS04045 PF00391 PEP-utilising enzyme, mobile domain NLY35_RS04045 PF02896 PEP-utilising enzyme, TIM barrel domain NLY35_RS04050 PF08903 Domain of unknown function (DUF1846) NLY35_RS04070 PF01348 Type II intron maturase NLY35_RS04070 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NLY35_RS04075 PF00035 Double-stranded RNA binding motif NLY35_RS04075 PF14622 Ribonuclease-III-like NLY35_RS04080 PF02463 RecF/RecN/SMC N terminal domain NLY35_RS04080 PF06470 SMC proteins Flexible Hinge Domain NLY35_RS04095 PF02881 SRP54-type protein, helical bundle domain NLY35_RS04095 PF00448 SRP54-type protein, GTPase domain NLY35_RS04110 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NLY35_RS04110 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NLY35_RS04115 PF09323 Domain of unknown function (DUF1980) NLY35_RS04120 PF03773 Predicted permease NLY35_RS04130 PF12826 Helix-hairpin-helix motif NLY35_RS04130 PF03120 NAD-dependent DNA ligase OB-fold domain NLY35_RS04130 PF01653 NAD-dependent DNA ligase adenylation domain NLY35_RS04130 PF00533 BRCA1 C Terminus (BRCT) domain NLY35_RS04130 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NLY35_RS04135 PF00781 Diacylglycerol kinase catalytic domain NLY35_RS04140 PF00137 ATP synthase subunit C NLY35_RS04145 PF00119 ATP synthase A chain NLY35_RS04150 PF00430 ATP synthase B/B' CF(0) NLY35_RS04155 PF00213 ATP synthase delta (OSCP) subunit NLY35_RS04160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NLY35_RS04160 PF00306 ATP synthase alpha/beta chain, C terminal domain NLY35_RS04160 PF02874 ATP synthase alpha/beta family, beta-barrel domain NLY35_RS04165 PF00231 ATP synthase NLY35_RS04170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NLY35_RS04170 PF02874 ATP synthase alpha/beta family, beta-barrel domain NLY35_RS04175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NLY35_RS04175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NLY35_RS04185 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NLY35_RS04190 PF11772 DNA-directed RNA polymerase subunit beta NLY35_RS04195 PF01223 DNA/RNA non-specific endonuclease NLY35_RS04210 PF00294 pfkB family carbohydrate kinase NLY35_RS04215 PF02837 Glycosyl hydrolases family 2, sugar binding domain NLY35_RS04215 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NLY35_RS04215 PF00703 Glycosyl hydrolases family 2 NLY35_RS04220 PF00392 Bacterial regulatory proteins, gntR family NLY35_RS04220 PF07729 FCD domain NLY35_RS04225 PF01081 KDPG and KHG aldolase NLY35_RS04230 PF02614 Glucuronate isomerase NLY35_RS04235 PF03786 D-mannonate dehydratase (UxuA) NLY35_RS04240 PF00106 short chain dehydrogenase NLY35_RS04250 PF00933 Glycosyl hydrolase family 3 N terminal domain NLY35_RS04255 PF00933 Glycosyl hydrolase family 3 N terminal domain NLY35_RS04260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NLY35_RS04260 PF01409 tRNA synthetases class II core domain (F) NLY35_RS04265 PF13673 Acetyltransferase (GNAT) domain NLY35_RS04270 PF03483 B3/4 domain NLY35_RS04270 PF03484 tRNA synthetase B5 domain NLY35_RS04270 PF03147 Ferredoxin-fold anticodon binding domain NLY35_RS04270 PF01588 Putative tRNA binding domain NLY35_RS04270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NLY35_RS04295 PF00293 NUDIX domain NLY35_RS04300 PF01227 GTP cyclohydrolase I NLY35_RS04305 PF00809 Pterin binding enzyme NLY35_RS04310 PF02152 Dihydroneopterin aldolase NLY35_RS04315 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NLY35_RS04325 PF16916 Dimerisation domain of Zinc Transporter NLY35_RS04325 PF01545 Cation efflux family NLY35_RS04340 PF01047 MarR family NLY35_RS04345 PF06993 Protein of unknown function (DUF1304) NLY35_RS04380 PF07687 Peptidase dimerisation domain NLY35_RS04380 PF01546 Peptidase family M20/M25/M40 NLY35_RS04425 PF16198 tRNA pseudouridylate synthase B C-terminal domain NLY35_RS04425 PF01509 TruB family pseudouridylate synthase (N terminal domain) NLY35_RS04430 PF06574 FAD synthetase NLY35_RS04430 PF01687 Riboflavin kinase NLY35_RS04435 PF07885 Ion channel NLY35_RS04440 PF03960 ArsC family NLY35_RS04445 PF05256 Uncharacterised protein family (UPF0223) NLY35_RS04450 PF00459 Inositol monophosphatase family NLY35_RS04455 PF01189 16S rRNA methyltransferase RsmB/F NLY35_RS04455 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NLY35_RS04455 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NLY35_RS04460 PF12849 PBP superfamily domain NLY35_RS04465 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS04470 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS04475 PF00005 ABC transporter NLY35_RS04480 PF00005 ABC transporter NLY35_RS04485 PF01895 PhoU domain NLY35_RS04495 PF00486 Transcriptional regulatory protein, C terminal NLY35_RS04495 PF00072 Response regulator receiver domain NLY35_RS04500 PF00512 His Kinase A (phospho-acceptor) domain NLY35_RS04500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS04510 PF01649 Ribosomal protein S20 NLY35_RS04515 PF00485 Phosphoribulokinase / Uridine kinase family NLY35_RS04520 PF05175 Methyltransferase small domain NLY35_RS04525 PF02885 Glycosyl transferase family, helical bundle domain NLY35_RS04525 PF00591 Glycosyl transferase family, a/b domain NLY35_RS04525 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NLY35_RS04530 PF01791 DeoC/LacD family aldolase NLY35_RS04535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NLY35_RS04540 PF02608 ABC transporter substrate-binding protein PnrA-like NLY35_RS04545 PF00005 ABC transporter NLY35_RS04550 PF02653 Branched-chain amino acid transport system / permease component NLY35_RS04555 PF02653 Branched-chain amino acid transport system / permease component NLY35_RS04565 PF01565 FAD binding domain NLY35_RS04565 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NLY35_RS04570 PF00005 ABC transporter NLY35_RS04570 PF08402 TOBE domain NLY35_RS04575 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS04580 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS04585 PF13416 Bacterial extracellular solute-binding protein NLY35_RS04590 PF00654 Voltage gated chloride channel NLY35_RS04600 PF00082 Subtilase family NLY35_RS04600 PF06280 Fn3-like domain NLY35_RS04600 PF02225 PA domain NLY35_RS04605 PF01256 Carbohydrate kinase NLY35_RS04610 PF10576 Iron-sulfur binding domain of endonuclease III NLY35_RS04610 PF00633 Helix-hairpin-helix motif NLY35_RS04610 PF00730 HhH-GPD superfamily base excision DNA repair protein NLY35_RS04615 PF00478 IMP dehydrogenase / GMP reductase domain NLY35_RS04625 PF05239 PRC-barrel domain NLY35_RS04625 PF01782 RimM N-terminal domain NLY35_RS04630 PF01746 tRNA (Guanine-1)-methyltransferase NLY35_RS04635 PF00155 Aminotransferase class I and II NLY35_RS04640 PF00455 DeoR C terminal sensor domain NLY35_RS04640 PF08220 DeoR-like helix-turn-helix domain NLY35_RS04645 PF00294 pfkB family carbohydrate kinase NLY35_RS04650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NLY35_RS04650 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS04660 PF02645 Uncharacterised protein, DegV family COG1307 NLY35_RS04665 PF05173 Dihydrodipicolinate reductase, C-terminus NLY35_RS04665 PF01113 Dihydrodipicolinate reductase, N-terminus NLY35_RS04670 PF13735 tRNA nucleotidyltransferase domain 2 putative NLY35_RS04670 PF01743 Poly A polymerase head domain NLY35_RS04670 PF12627 Probable RNA and SrmB- binding site of polymerase A NLY35_RS04675 PF16326 ABC transporter C-terminal domain NLY35_RS04675 PF00005 ABC transporter NLY35_RS04675 PF12848 ABC transporter NLY35_RS04685 PF00480 ROK family NLY35_RS04700 PF00303 Thymidylate synthase NLY35_RS04705 PF00186 Dihydrofolate reductase NLY35_RS04710 PF07724 AAA domain (Cdc48 subfamily) NLY35_RS04710 PF10431 C-terminal, D2-small domain, of ClpB protein NLY35_RS04710 PF06689 ClpX C4-type zinc finger NLY35_RS04715 PF01926 50S ribosome-binding GTPase NLY35_RS04720 PF00334 Nucleoside diphosphate kinase NLY35_RS04725 PF06421 GTP-binding protein LepA C-terminus NLY35_RS04725 PF03144 Elongation factor Tu domain 2 NLY35_RS04725 PF00009 Elongation factor Tu GTP binding domain NLY35_RS04725 PF00679 Elongation factor G C-terminus NLY35_RS04725 PF14492 Elongation Factor G, domain II NLY35_RS04730 PF01361 Tautomerase enzyme NLY35_RS04745 PF00265 Thymidine kinase NLY35_RS04750 PF03462 PCRF domain NLY35_RS04750 PF00472 RF-1 domain NLY35_RS04755 PF05175 Methyltransferase small domain NLY35_RS04760 PF03481 Putative GTP-binding controlling metal-binding NLY35_RS04760 PF01300 Telomere recombination NLY35_RS04770 PF00464 Serine hydroxymethyltransferase NLY35_RS04785 PF00106 short chain dehydrogenase NLY35_RS04810 PF12102 Domain of unknown function (DUF3578) NLY35_RS04810 PF07728 AAA domain (dynein-related subfamily) NLY35_RS04815 PF10117 McrBC 5-methylcytosine restriction system component NLY35_RS04820 PF00589 Phage integrase family NLY35_RS04820 PF13495 Phage integrase, N-terminal SAM-like domain NLY35_RS04885 PF00958 GMP synthase C terminal domain NLY35_RS04885 PF02540 NAD synthase NLY35_RS04885 PF00117 Glutamine amidotransferase class-I NLY35_RS04890 PF00392 Bacterial regulatory proteins, gntR family NLY35_RS04890 PF07702 UTRA domain NLY35_RS04895 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NLY35_RS04900 PF02978 Signal peptide binding domain NLY35_RS04900 PF02881 SRP54-type protein, helical bundle domain NLY35_RS04900 PF00448 SRP54-type protein, GTPase domain NLY35_RS04920 PF00069 Protein kinase domain NLY35_RS04920 PF03793 PASTA domain NLY35_RS04925 PF13495 Phage integrase, N-terminal SAM-like domain NLY35_RS04925 PF00589 Phage integrase family NLY35_RS04930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLY35_RS04930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLY35_RS04930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLY35_RS04930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLY35_RS04935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS04935 PF00512 His Kinase A (phospho-acceptor) domain NLY35_RS04940 PF00072 Response regulator receiver domain NLY35_RS04940 PF00486 Transcriptional regulatory protein, C terminal NLY35_RS04955 PF02687 FtsX-like permease family NLY35_RS04960 PF00005 ABC transporter NLY35_RS04985 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase NLY35_RS04985 PF00756 Putative esterase NLY35_RS05005 PF01134 Glucose inhibited division protein A NLY35_RS05020 PF00542 Ribosomal protein L7/L12 C-terminal domain NLY35_RS05020 PF16320 Ribosomal protein L7/L12 dimerisation domain NLY35_RS05025 PF00466 Ribosomal protein L10 NLY35_RS05035 PF01131 DNA topoisomerase NLY35_RS05035 PF01396 Topoisomerase DNA binding C4 zinc finger NLY35_RS05035 PF01751 Toprim domain NLY35_RS05040 PF02481 DNA recombination-mediator protein A NLY35_RS05040 PF18255 DNA processing protein A sterile alpha motif domain NLY35_RS05045 PF14602 Hexapeptide repeat of succinyl-transferase NLY35_RS05045 PF12464 Maltose acetyltransferase NLY35_RS05050 PF02583 Metal-sensitive transcriptional repressor NLY35_RS05055 PF00581 Rhodanese-like domain NLY35_RS05060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLY35_RS05060 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS05070 PF03006 Haemolysin-III related NLY35_RS05080 PF01351 Ribonuclease HII NLY35_RS05085 PF01926 50S ribosome-binding GTPase NLY35_RS05100 PF08305 NPCBM/NEW2 domain NLY35_RS05100 PF08306 Glycosyl hydrolase family 98 NLY35_RS05100 PF08307 Glycosyl hydrolase family 98 C-terminal domain NLY35_RS05105 PF00480 ROK family NLY35_RS05120 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS05125 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS05135 PF00596 Class II Aldolase and Adducin N-terminal domain NLY35_RS05140 PF02952 L-fucose isomerase, C-terminal domain NLY35_RS05140 PF07881 L-fucose isomerase, first N-terminal domain NLY35_RS05140 PF07882 L-fucose isomerase, second N-terminal domain NLY35_RS05145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NLY35_RS05145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NLY35_RS05150 PF00455 DeoR C terminal sensor domain NLY35_RS05150 PF08220 DeoR-like helix-turn-helix domain NLY35_RS05160 PF02545 Maf-like protein NLY35_RS05165 PF00149 Calcineurin-like phosphoesterase NLY35_RS05165 PF02872 5'-nucleotidase, C-terminal domain NLY35_RS05175 PF01979 Amidohydrolase family NLY35_RS05180 PF03167 Uracil DNA glycosylase superfamily NLY35_RS05185 PF00535 Glycosyl transferase family 2 NLY35_RS05190 PF00156 Phosphoribosyl transferase domain NLY35_RS05200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NLY35_RS05205 PF01180 Dihydroorotate dehydrogenase NLY35_RS05210 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NLY35_RS05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLY35_RS05215 PF03466 LysR substrate binding domain NLY35_RS05220 PF00483 Nucleotidyl transferase NLY35_RS05220 PF00132 Bacterial transferase hexapeptide (six repeats) NLY35_RS05225 PF00132 Bacterial transferase hexapeptide (six repeats) NLY35_RS05225 PF00483 Nucleotidyl transferase NLY35_RS05230 PF08323 Starch synthase catalytic domain NLY35_RS05230 PF00534 Glycosyl transferases group 1 NLY35_RS05235 PF00128 Alpha amylase, catalytic domain NLY35_RS05235 PF02806 Alpha amylase, C-terminal all-beta domain NLY35_RS05235 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NLY35_RS05240 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS05245 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS05250 PF00293 NUDIX domain NLY35_RS05260 PF04650 YSIRK type signal peptide NLY35_RS05260 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region NLY35_RS05260 PF07501 G5 domain NLY35_RS05260 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region NLY35_RS05265 PF00746 LPXTG cell wall anchor motif NLY35_RS05265 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region NLY35_RS05265 PF04650 YSIRK type signal peptide NLY35_RS05265 PF07581 The GLUG motif NLY35_RS05265 PF07501 G5 domain NLY35_RS05265 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region NLY35_RS05275 PF00271 Helicase conserved C-terminal domain NLY35_RS05275 PF02151 UvrB/uvrC motif NLY35_RS05275 PF04851 Type III restriction enzyme, res subunit NLY35_RS05275 PF17757 UvrB interaction domain NLY35_RS05275 PF12344 Ultra-violet resistance protein B NLY35_RS05285 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS05290 PF00005 ABC transporter NLY35_RS05300 PF12848 ABC transporter NLY35_RS05300 PF16326 ABC transporter C-terminal domain NLY35_RS05300 PF00005 ABC transporter NLY35_RS05305 PF01053 Cys/Met metabolism PLP-dependent enzyme NLY35_RS05325 PF01263 Aldose 1-epimerase NLY35_RS05330 PF00232 Glycosyl hydrolase family 1 NLY35_RS05335 PF02378 Phosphotransferase system, EIIC NLY35_RS05335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS05340 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NLY35_RS05345 PF03123 CAT RNA binding domain NLY35_RS05345 PF00874 PRD domain NLY35_RS05350 PF01791 DeoC/LacD family aldolase NLY35_RS05355 PF00294 pfkB family carbohydrate kinase NLY35_RS05360 PF02502 Ribose/Galactose Isomerase NLY35_RS05365 PF02502 Ribose/Galactose Isomerase NLY35_RS05370 PF00455 DeoR C terminal sensor domain NLY35_RS05370 PF08220 DeoR-like helix-turn-helix domain NLY35_RS05400 PF01381 Helix-turn-helix NLY35_RS05400 PF08671 Anti-repressor SinI NLY35_RS05405 PF00730 HhH-GPD superfamily base excision DNA repair protein NLY35_RS05405 PF14815 NUDIX domain NLY35_RS05415 PF00664 ABC transporter transmembrane region NLY35_RS05415 PF00005 ABC transporter NLY35_RS05420 PF00664 ABC transporter transmembrane region NLY35_RS05420 PF00005 ABC transporter NLY35_RS05425 PF01515 Phosphate acetyl/butaryl transferase NLY35_RS05430 PF00849 RNA pseudouridylate synthase NLY35_RS05435 PF01513 ATP-NAD kinase NLY35_RS05440 PF04607 Region found in RelA / SpoT proteins NLY35_RS05445 PF01928 CYTH domain NLY35_RS05450 PF14572 Phosphoribosyl synthetase-associated domain NLY35_RS05450 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NLY35_RS05455 PF00266 Aminotransferase class-V NLY35_RS05470 PF02629 CoA binding domain NLY35_RS05470 PF06971 Putative DNA-binding protein N-terminus NLY35_RS05475 PF07722 Peptidase C26 NLY35_RS05480 PF04002 RadC-like JAB domain NLY35_RS05485 PF04203 Sortase domain NLY35_RS05490 PF00521 DNA gyrase/topoisomerase IV, subunit A NLY35_RS05490 PF03989 DNA gyrase C-terminal domain, beta-propeller NLY35_RS05495 PF00056 lactate/malate dehydrogenase, NAD binding domain NLY35_RS05495 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NLY35_RS05510 PF00288 GHMP kinases N terminal domain NLY35_RS05510 PF08544 GHMP kinases C terminal NLY35_RS05515 PF00742 Homoserine dehydrogenase NLY35_RS05515 PF03447 Homoserine dehydrogenase, NAD binding domain NLY35_RS05520 PF01522 Polysaccharide deacetylase NLY35_RS05525 PF00005 ABC transporter NLY35_RS05525 PF00664 ABC transporter transmembrane region NLY35_RS05530 PF00664 ABC transporter transmembrane region NLY35_RS05530 PF00005 ABC transporter NLY35_RS05540 PF00886 Ribosomal protein S16 NLY35_RS05550 PF01470 Pyroglutamyl peptidase NLY35_RS05555 PF04445 Putative SAM-dependent methyltransferase NLY35_RS05560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLY35_RS05560 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NLY35_RS05560 PF02142 MGS-like domain NLY35_RS05565 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NLY35_RS05565 PF00117 Glutamine amidotransferase class-I NLY35_RS05570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NLY35_RS05570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NLY35_RS05575 PF00156 Phosphoribosyl transferase domain NLY35_RS05585 PF03831 PhnA domain NLY35_RS05585 PF08274 PhnA Zinc-Ribbon NLY35_RS05590 PF00849 RNA pseudouridylate synthase NLY35_RS05590 PF01479 S4 domain NLY35_RS05595 PF01252 Signal peptidase (SPase) II NLY35_RS05600 PF03466 LysR substrate binding domain NLY35_RS05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NLY35_RS05610 PF01016 Ribosomal L27 protein NLY35_RS05615 PF00829 Ribosomal prokaryotic L21 protein NLY35_RS05620 PF05525 Branched-chain amino acid transport protein NLY35_RS05625 PF02926 THUMP domain NLY35_RS05625 PF02568 Thiamine biosynthesis protein (ThiI) NLY35_RS05630 PF00266 Aminotransferase class-V NLY35_RS05655 PF00575 S1 RNA binding domain NLY35_RS05675 PF01063 Amino-transferase class IV NLY35_RS05685 PF03989 DNA gyrase C-terminal domain, beta-propeller NLY35_RS05685 PF00521 DNA gyrase/topoisomerase IV, subunit A NLY35_RS05700 PF02661 Fic/DOC family NLY35_RS05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS05710 PF00986 DNA gyrase B subunit, carboxyl terminus NLY35_RS05710 PF00204 DNA gyrase B NLY35_RS05710 PF01751 Toprim domain NLY35_RS05715 PF02660 Glycerol-3-phosphate acyltransferase NLY35_RS05720 PF13361 UvrD-like helicase C-terminal domain NLY35_RS05720 PF00580 UvrD/REP helicase N-terminal domain NLY35_RS05720 PF12705 PD-(D/E)XK nuclease superfamily NLY35_RS05725 PF12705 PD-(D/E)XK nuclease superfamily NLY35_RS05730 PF04650 YSIRK type signal peptide NLY35_RS05730 PF06458 MucBP domain NLY35_RS05730 PF00746 LPXTG cell wall anchor motif NLY35_RS05740 PF04650 YSIRK type signal peptide NLY35_RS05740 PF00746 LPXTG cell wall anchor motif NLY35_RS05740 PF06458 MucBP domain NLY35_RS05745 PF00746 LPXTG cell wall anchor motif NLY35_RS05745 PF06458 MucBP domain NLY35_RS05745 PF04650 YSIRK type signal peptide NLY35_RS05755 PF01926 50S ribosome-binding GTPase NLY35_RS05755 PF09269 Domain of unknown function (DUF1967) NLY35_RS05755 PF01018 GTP1/OBG NLY35_RS05765 PF08459 UvrC Helix-hairpin-helix N-terminal NLY35_RS05765 PF02151 UvrB/uvrC motif NLY35_RS05765 PF01541 GIY-YIG catalytic domain NLY35_RS05770 PF00005 ABC transporter NLY35_RS05800 PF13419 Haloacid dehalogenase-like hydrolase NLY35_RS05815 PF13361 UvrD-like helicase C-terminal domain NLY35_RS05815 PF00580 UvrD/REP helicase N-terminal domain NLY35_RS05820 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS05820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLY35_RS05830 PF01432 Peptidase family M3 NLY35_RS05830 PF08439 Oligopeptidase F NLY35_RS05845 PF00701 Dihydrodipicolinate synthetase family NLY35_RS05850 PF02774 Semialdehyde dehydrogenase, dimerisation domain NLY35_RS05850 PF01118 Semialdehyde dehydrogenase, NAD binding domain NLY35_RS05855 PF00465 Iron-containing alcohol dehydrogenase NLY35_RS05865 PF00923 Transaldolase/Fructose-6-phosphate aldolase NLY35_RS05875 PF02378 Phosphotransferase system, EIIC NLY35_RS05880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS05885 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NLY35_RS05890 PF13936 Helix-turn-helix domain NLY35_RS05890 PF04198 Putative sugar-binding domain NLY35_RS05895 PF00455 DeoR C terminal sensor domain NLY35_RS05895 PF08220 DeoR-like helix-turn-helix domain NLY35_RS05900 PF04055 Radical SAM superfamily NLY35_RS05925 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS05925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLY35_RS05935 PF01268 Formate--tetrahydrofolate ligase NLY35_RS05940 PF02441 Flavoprotein NLY35_RS05940 PF04127 DNA / pantothenate metabolism flavoprotein NLY35_RS05945 PF02441 Flavoprotein NLY35_RS05950 PF12822 ECF transporter, substrate-specific component NLY35_RS05955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NLY35_RS05955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NLY35_RS05955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NLY35_RS05955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NLY35_RS05975 PF10544 T5orf172 domain NLY35_RS06010 PF13520 Amino acid permease NLY35_RS06020 PF03372 Endonuclease/Exonuclease/phosphatase family NLY35_RS06030 PF03960 ArsC family NLY35_RS06035 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NLY35_RS06035 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NLY35_RS06040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NLY35_RS06040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NLY35_RS06040 PF01842 ACT domain NLY35_RS06050 PF00266 Aminotransferase class-V NLY35_RS06055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NLY35_RS06060 PF06156 Initiation control protein YabA NLY35_RS06065 PF09115 DNA polymerase III, delta subunit, C terminal NLY35_RS06070 PF02223 Thymidylate kinase NLY35_RS06075 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NLY35_RS06075 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NLY35_RS06090 PF00571 CBS domain NLY35_RS06100 PF00753 Metallo-beta-lactamase superfamily NLY35_RS06100 PF13567 Domain of unknown function (DUF4131) NLY35_RS06100 PF03772 Competence protein NLY35_RS06105 PF10531 SLBB domain NLY35_RS06110 PF01553 Acyltransferase NLY35_RS06115 PF08245 Mur ligase middle domain NLY35_RS06115 PF02875 Mur ligase family, glutamate ligase domain NLY35_RS06120 PF00005 ABC transporter NLY35_RS06125 PF01497 Periplasmic binding protein NLY35_RS06130 PF01032 FecCD transport family NLY35_RS06135 PF01032 FecCD transport family NLY35_RS06140 PF00255 Glutathione peroxidase NLY35_RS06145 PF01479 S4 domain NLY35_RS06145 PF00849 RNA pseudouridylate synthase NLY35_RS06150 PF13409 Glutathione S-transferase, N-terminal domain NLY35_RS06160 PF04914 DltD protein NLY35_RS06165 PF00550 Phosphopantetheine attachment site NLY35_RS06170 PF03062 MBOAT, membrane-bound O-acyltransferase family NLY35_RS06175 PF13193 AMP-binding enzyme C-terminal domain NLY35_RS06175 PF00501 AMP-binding enzyme NLY35_RS06215 PF00535 Glycosyl transferase family 2 NLY35_RS06230 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NLY35_RS06235 PF02547 Queuosine biosynthesis protein NLY35_RS06240 PF02863 Arginine repressor, C-terminal domain NLY35_RS06240 PF01316 Arginine repressor, DNA binding domain NLY35_RS06255 PF01546 Peptidase family M20/M25/M40 NLY35_RS06260 PF03606 C4-dicarboxylate anaerobic carrier NLY35_RS06265 PF00696 Amino acid kinase family NLY35_RS06270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NLY35_RS06270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NLY35_RS06275 PF13673 Acetyltransferase (GNAT) domain NLY35_RS06290 PF02650 WhiA C-terminal HTH domain NLY35_RS06290 PF14527 WhiA LAGLIDADG-like domain NLY35_RS06290 PF10298 WhiA N-terminal LAGLIDADG-like domain NLY35_RS06295 PF01933 Uncharacterised protein family UPF0052 NLY35_RS06300 PF03668 P-loop ATPase protein family NLY35_RS06305 PF01042 Endoribonuclease L-PSP NLY35_RS06315 PF00152 tRNA synthetases class II (D, K and N) NLY35_RS06315 PF01336 OB-fold nucleic acid binding domain NLY35_RS06320 PF00155 Aminotransferase class I and II NLY35_RS06335 PF02525 Flavodoxin-like fold NLY35_RS06340 PF03275 UDP-galactopyranose mutase NLY35_RS06350 PF02796 Helix-turn-helix domain of resolvase NLY35_RS06350 PF00239 Resolvase, N terminal domain NLY35_RS06360 PF18218 Lantibiotic immunity protein Spa1 C-terminal domain NLY35_RS06375 PF00005 ABC transporter NLY35_RS06380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS06380 PF00512 His Kinase A (phospho-acceptor) domain NLY35_RS06385 PF00072 Response regulator receiver domain NLY35_RS06385 PF00486 Transcriptional regulatory protein, C terminal NLY35_RS06390 PF00082 Subtilase family NLY35_RS06395 PF03432 Relaxase/Mobilisation nuclease domain NLY35_RS06415 PF06414 Zeta toxin NLY35_RS06420 PF01381 Helix-turn-helix NLY35_RS06450 PF13614 AAA domain NLY35_RS06465 PF00398 Ribosomal RNA adenine dimethylase NLY35_RS06485 PF02229 Transcriptional Coactivator p15 (PC4) NLY35_RS06490 PF02195 ParB-like nuclease domain NLY35_RS06490 PF17762 HTH domain found in ParB protein NLY35_RS06495 PF01076 Plasmid recombination enzyme NLY35_RS06530 PF14492 Elongation Factor G, domain II NLY35_RS06530 PF00679 Elongation factor G C-terminus NLY35_RS06530 PF00009 Elongation factor Tu GTP binding domain NLY35_RS06530 PF03764 Elongation factor G, domain IV NLY35_RS06560 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NLY35_RS06560 PF01348 Type II intron maturase NLY35_RS06570 PF01348 Type II intron maturase NLY35_RS06570 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NLY35_RS06590 PF06696 Streptococcal surface antigen repeat NLY35_RS06590 PF08363 Glucan-binding protein C NLY35_RS06590 PF16364 Cell surface antigen C-terminus NLY35_RS06590 PF17998 Cell surface antigen I/II C2 terminal domain NLY35_RS06590 PF18652 Adhesin P1 N-terminal domain NLY35_RS06660 PF00145 C-5 cytosine-specific DNA methylase NLY35_RS06675 PF05958 tRNA (Uracil-5-)-methyltransferase NLY35_RS06680 PF03816 Cell envelope-related transcriptional attenuator domain NLY35_RS06685 PF00800 Prephenate dehydratase NLY35_RS06690 PF01202 Shikimate kinase NLY35_RS06695 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NLY35_RS06700 PF04851 Type III restriction enzyme, res subunit NLY35_RS06700 PF00271 Helicase conserved C-terminal domain NLY35_RS06700 PF17764 3′ DNA-binding domain (3′BD) NLY35_RS06700 PF18074 Primosomal protein N C-terminal domain NLY35_RS06700 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NLY35_RS06715 PF00464 Serine hydroxymethyltransferase NLY35_RS06720 PF00589 Phage integrase family NLY35_RS06720 PF02899 Phage integrase, N-terminal SAM-like domain NLY35_RS06760 PF13472 GDSL-like Lipase/Acylhydrolase family NLY35_RS06760 PF02348 Cytidylyltransferase NLY35_RS06770 PF02350 UDP-N-acetylglucosamine 2-epimerase NLY35_RS06775 PF08666 SAF domain NLY35_RS06775 PF03102 NeuB family NLY35_RS06800 PF01501 Glycosyl transferase family 8 NLY35_RS06800 PF00535 Glycosyl transferase family 2 NLY35_RS06805 PF01501 Glycosyl transferase family 8 NLY35_RS06805 PF00535 Glycosyl transferase family 2 NLY35_RS06820 PF13439 Glycosyltransferase Family 4 NLY35_RS06820 PF00534 Glycosyl transferases group 1 NLY35_RS06830 PF02397 Bacterial sugar transferase NLY35_RS06840 PF13614 AAA domain NLY35_RS06845 PF02706 Chain length determinant protein NLY35_RS06855 PF03883 Peroxide stress protein YaaA NLY35_RS06860 PF00155 Aminotransferase class I and II NLY35_RS06860 PF00392 Bacterial regulatory proteins, gntR family NLY35_RS06865 PF02645 Uncharacterised protein, DegV family COG1307 NLY35_RS06880 PF14748 Pyrroline-5-carboxylate reductase dimerisation NLY35_RS06880 PF03807 NADP oxidoreductase coenzyme F420-dependent NLY35_RS06885 PF00171 Aldehyde dehydrogenase family NLY35_RS06890 PF01472 PUA domain NLY35_RS06890 PF00696 Amino acid kinase family NLY35_RS06895 PF00929 Exonuclease NLY35_RS06895 PF13307 Helicase C-terminal domain NLY35_RS06900 PF00753 Metallo-beta-lactamase superfamily NLY35_RS06920 PF06133 Control of competence regulator ComK, YlbF/YmcA NLY35_RS06925 PF02153 Prephenate dehydrogenase NLY35_RS06930 PF01264 Chorismate synthase NLY35_RS06935 PF01487 Type I 3-dehydroquinase NLY35_RS06940 PF10672 S-adenosylmethionine-dependent methyltransferase NLY35_RS06940 PF17785 PUA-like domain NLY35_RS06945 PF00884 Sulfatase NLY35_RS06955 PF00453 Ribosomal protein L20 NLY35_RS06960 PF01632 Ribosomal protein L35 NLY35_RS06965 PF00707 Translation initiation factor IF-3, C-terminal domain NLY35_RS06965 PF05198 Translation initiation factor IF-3, N-terminal domain NLY35_RS06970 PF02224 Cytidylate kinase NLY35_RS07000 PF00535 Glycosyl transferase family 2 NLY35_RS07005 PF13439 Glycosyltransferase Family 4 NLY35_RS07005 PF00534 Glycosyl transferases group 1 NLY35_RS07015 PF00535 Glycosyl transferase family 2 NLY35_RS07015 PF01501 Glycosyl transferase family 8 NLY35_RS07020 PF01501 Glycosyl transferase family 8 NLY35_RS07040 PF00005 ABC transporter NLY35_RS07040 PF14524 Wzt C-terminal domain NLY35_RS07050 PF00535 Glycosyl transferase family 2 NLY35_RS07070 PF01520 N-acetylmuramoyl-L-alanine amidase NLY35_RS07070 PF05036 Sporulation related domain NLY35_RS07080 PF04321 RmlD substrate binding domain NLY35_RS07085 PF16363 GDP-mannose 4,6 dehydratase NLY35_RS07095 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NLY35_RS07100 PF00483 Nucleotidyl transferase NLY35_RS07105 PF02535 ZIP Zinc transporter NLY35_RS07110 PF01784 NIF3 (NGG1p interacting factor 3) NLY35_RS07115 PF04816 tRNA (adenine(22)-N(1))-methyltransferase NLY35_RS07125 PF04204 Homoserine O-succinyltransferase NLY35_RS07130 PF00156 Phosphoribosyl transferase domain NLY35_RS07145 PF02272 DHHA1 domain NLY35_RS07145 PF10141 Single-strand DNA-specific exonuclease, C terminal domain NLY35_RS07145 PF01368 DHH family NLY35_RS07145 PF17768 RecJ OB domain NLY35_RS07150 PF13091 PLD-like domain NLY35_RS07160 PF00106 short chain dehydrogenase NLY35_RS07165 PF00753 Metallo-beta-lactamase superfamily NLY35_RS07165 PF12706 Beta-lactamase superfamily domain NLY35_RS07175 PF16360 GTP-binding GTPase Middle Region NLY35_RS07175 PF13167 GTP-binding GTPase N-terminal NLY35_RS07175 PF01926 50S ribosome-binding GTPase NLY35_RS07190 PF07690 Major Facilitator Superfamily NLY35_RS07195 PF01717 Cobalamin-independent synthase, Catalytic domain NLY35_RS07205 PF02562 PhoH-like protein NLY35_RS07210 PF06855 YozE SAM-like fold NLY35_RS07220 PF02558 Ketopantoate reductase PanE/ApbA NLY35_RS07220 PF08546 Ketopantoate reductase PanE/ApbA C terminal NLY35_RS07225 PF17783 CvfB-like winged helix domain NLY35_RS07225 PF13509 S1 domain NLY35_RS07230 PF01765 Ribosome recycling factor NLY35_RS07235 PF00696 Amino acid kinase family NLY35_RS07240 PF01943 Polysaccharide biosynthesis protein NLY35_RS07240 PF14667 Polysaccharide biosynthesis C-terminal domain NLY35_RS07245 PF02798 Glutathione S-transferase, N-terminal domain NLY35_RS07255 PF00687 Ribosomal protein L1p/L10e family NLY35_RS07260 PF00298 Ribosomal protein L11, RNA binding domain NLY35_RS07260 PF03946 Ribosomal protein L11, N-terminal domain NLY35_RS07270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NLY35_RS07275 PF17854 FtsK alpha domain NLY35_RS07275 PF09397 Ftsk gamma domain NLY35_RS07275 PF01580 FtsK/SpoIIIE family NLY35_RS07280 PF08244 Glycosyl hydrolases family 32 C terminal NLY35_RS07280 PF00251 Glycosyl hydrolases family 32 N-terminal domain NLY35_RS07285 PF01547 Bacterial extracellular solute-binding protein NLY35_RS07290 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS07295 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS07300 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS07320 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NLY35_RS07325 PF16658 Class II release factor RF3, C-terminal domain NLY35_RS07325 PF00009 Elongation factor Tu GTP binding domain NLY35_RS07325 PF03144 Elongation factor Tu domain 2 NLY35_RS07335 PF01548 Transposase NLY35_RS07335 PF02371 Transposase IS116/IS110/IS902 family NLY35_RS07345 PF02875 Mur ligase family, glutamate ligase domain NLY35_RS07345 PF01225 Mur ligase family, catalytic domain NLY35_RS07345 PF08245 Mur ligase middle domain NLY35_RS07350 PF00005 ABC transporter NLY35_RS07355 PF02687 FtsX-like permease family NLY35_RS07365 PF07478 D-ala D-ala ligase C-terminus NLY35_RS07365 PF01820 D-ala D-ala ligase N-terminus NLY35_RS07370 PF02132 RecR protein NLY35_RS07370 PF13662 Toprim domain NLY35_RS07375 PF00905 Penicillin binding protein transpeptidase domain NLY35_RS07375 PF03717 Penicillin-binding Protein dimerisation domain NLY35_RS07380 PF12848 ABC transporter NLY35_RS07380 PF00005 ABC transporter NLY35_RS07385 PF00753 Metallo-beta-lactamase superfamily NLY35_RS07390 PF00672 HAMP domain NLY35_RS07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS07390 PF00512 His Kinase A (phospho-acceptor) domain NLY35_RS07390 PF13426 PAS domain NLY35_RS07395 PF00072 Response regulator receiver domain NLY35_RS07395 PF00486 Transcriptional regulatory protein, C terminal NLY35_RS07400 PF00005 ABC transporter NLY35_RS07405 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS07410 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS07415 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS07420 PF03129 Anticodon binding domain NLY35_RS07420 PF02824 TGS domain NLY35_RS07420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NLY35_RS07420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NLY35_RS07435 PF13439 Glycosyltransferase Family 4 NLY35_RS07435 PF00534 Glycosyl transferases group 1 NLY35_RS07440 PF13439 Glycosyltransferase Family 4 NLY35_RS07440 PF00534 Glycosyl transferases group 1 NLY35_RS07450 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS07455 PF01321 Creatinase/Prolidase N-terminal domain NLY35_RS07455 PF00557 Metallopeptidase family M24 NLY35_RS07465 PF03613 PTS system mannose/fructose/sorbose family IID component NLY35_RS07470 PF03609 PTS system sorbose-specific iic component NLY35_RS07475 PF03830 PTS system sorbose subfamily IIB component NLY35_RS07480 PF01055 Glycosyl hydrolases family 31 NLY35_RS07485 PF01055 Glycosyl hydrolases family 31 NLY35_RS07490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NLY35_RS07490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NLY35_RS07505 PF00480 ROK family NLY35_RS07520 PF01702 Queuine tRNA-ribosyltransferase NLY35_RS07530 PF13380 CoA binding domain NLY35_RS07540 PF01367 5'-3' exonuclease, C-terminal SAM fold NLY35_RS07540 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NLY35_RS07540 PF00476 DNA polymerase family A NLY35_RS07550 PF01548 Transposase NLY35_RS07550 PF02371 Transposase IS116/IS110/IS902 family NLY35_RS07560 PF00005 ABC transporter NLY35_RS07570 PF08534 Redoxin NLY35_RS07575 PF00403 Heavy-metal-associated domain NLY35_RS07580 PF03577 Peptidase family C69 NLY35_RS07585 PF09313 Domain of unknown function (DUF1971) NLY35_RS07585 PF03848 Tellurite resistance protein TehB NLY35_RS07590 PF08240 Alcohol dehydrogenase GroES-like domain NLY35_RS07590 PF00107 Zinc-binding dehydrogenase NLY35_RS07595 PF01668 SmpB protein NLY35_RS07600 PF17876 Cold shock domain NLY35_RS07600 PF08206 Ribonuclease B OB domain NLY35_RS07600 PF00773 RNB domain NLY35_RS07600 PF00575 S1 RNA binding domain NLY35_RS07610 PF00471 Ribosomal protein L33 NLY35_RS07615 PF07690 Major Facilitator Superfamily NLY35_RS07615 PF00083 Sugar (and other) transporter NLY35_RS07620 PF01121 Dephospho-CoA kinase NLY35_RS07625 PF06827 Zinc finger found in FPG and IleRS NLY35_RS07625 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NLY35_RS07625 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NLY35_RS07630 PF01926 50S ribosome-binding GTPase NLY35_RS07630 PF07650 KH domain NLY35_RS07635 PF01219 Prokaryotic diacylglycerol kinase NLY35_RS07640 PF02130 Uncharacterized protein family UPF0054 NLY35_RS07645 PF01418 Helix-turn-helix domain, rpiR family NLY35_RS07645 PF01380 SIS domain NLY35_RS07650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NLY35_RS07650 PF00367 phosphotransferase system, EIIB NLY35_RS07650 PF02378 Phosphotransferase system, EIIC NLY35_RS07655 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase NLY35_RS07660 PF17440 Thiol-activated cytolysin beta sandwich domain NLY35_RS07660 PF01289 Thiol-activated cytolysin NLY35_RS07665 PF13419 Haloacid dehalogenase-like hydrolase NLY35_RS07845 PF00436 Single-strand binding protein family NLY35_RS07905 PF10548 P22AR C-terminal domain NLY35_RS07905 PF08346 AntA/AntB antirepressor NLY35_RS07960 PF02872 5'-nucleotidase, C-terminal domain NLY35_RS07960 PF17936 Bacterial Ig domain NLY35_RS07960 PF00149 Calcineurin-like phosphoesterase NLY35_RS07970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NLY35_RS07970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NLY35_RS07975 PF06144 DNA polymerase III, delta subunit NLY35_RS07990 PF00005 ABC transporter NLY35_RS07995 PF12399 Branched-chain amino acid ATP-binding cassette transporter NLY35_RS07995 PF00005 ABC transporter NLY35_RS08000 PF11862 Domain of unknown function (DUF3382) NLY35_RS08000 PF02653 Branched-chain amino acid transport system / permease component NLY35_RS08005 PF02653 Branched-chain amino acid transport system / permease component NLY35_RS08010 PF13458 Periplasmic binding protein NLY35_RS08015 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) NLY35_RS08020 PF00574 Clp protease NLY35_RS08030 PF00128 Alpha amylase, catalytic domain NLY35_RS08030 PF16657 Maltogenic Amylase, C-terminal domain NLY35_RS08035 PF00128 Alpha amylase, catalytic domain NLY35_RS08040 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS08045 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS08050 PF01547 Bacterial extracellular solute-binding protein NLY35_RS08060 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS08065 PF01547 Bacterial extracellular solute-binding protein NLY35_RS08070 PF16874 Glycosyl hydrolase family 36 C-terminal domain NLY35_RS08070 PF16875 Glycosyl hydrolase family 36 N-terminal domain NLY35_RS08075 PF02311 AraC-like ligand binding domain NLY35_RS08075 PF12833 Helix-turn-helix domain NLY35_RS08080 PF00155 Aminotransferase class I and II NLY35_RS08085 PF01053 Cys/Met metabolism PLP-dependent enzyme NLY35_RS08105 PF05175 Methyltransferase small domain NLY35_RS08110 PF01541 GIY-YIG catalytic domain NLY35_RS08115 PF02525 Flavodoxin-like fold NLY35_RS08130 PF01022 Bacterial regulatory protein, arsR family NLY35_RS08135 PF00270 DEAD/DEAH box helicase NLY35_RS08135 PF00271 Helicase conserved C-terminal domain NLY35_RS08140 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NLY35_RS08140 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NLY35_RS08145 PF08000 Bacterial PH domain NLY35_RS08170 PF01048 Phosphorylase superfamily NLY35_RS08180 PF00293 NUDIX domain NLY35_RS08185 PF00132 Bacterial transferase hexapeptide (six repeats) NLY35_RS08185 PF14602 Hexapeptide repeat of succinyl-transferase NLY35_RS08185 PF12804 MobA-like NTP transferase domain NLY35_RS08195 PF13302 Acetyltransferase (GNAT) domain NLY35_RS08210 PF14659 Phage integrase, N-terminal SAM-like domain NLY35_RS08210 PF00589 Phage integrase family NLY35_RS08325 PF00005 ABC transporter NLY35_RS08330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS08335 PF00486 Transcriptional regulatory protein, C terminal NLY35_RS08335 PF00072 Response regulator receiver domain NLY35_RS08345 PF00155 Aminotransferase class I and II NLY35_RS08355 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS08360 PF00005 ABC transporter NLY35_RS08360 PF00571 CBS domain NLY35_RS08380 PF01790 Prolipoprotein diacylglyceryl transferase NLY35_RS08385 PF07475 HPr Serine kinase C-terminal domain NLY35_RS08385 PF02603 HPr Serine kinase N terminus NLY35_RS08390 PF01238 Phosphomannose isomerase type I NLY35_RS08405 PF10263 SprT-like family NLY35_RS08405 PF17283 SprT-like zinc ribbon domain NLY35_RS08410 PF00575 S1 RNA binding domain NLY35_RS08410 PF09371 Tex-like protein N-terminal domain NLY35_RS08410 PF16921 Tex protein YqgF-like domain NLY35_RS08410 PF17674 HHH domain NLY35_RS08420 PF00746 LPXTG cell wall anchor motif NLY35_RS08420 PF16569 Gram-positive pilin backbone subunit 2, Cna-B-like domain NLY35_RS08420 PF17802 Prealbumin-like fold domain NLY35_RS08420 PF18002 T6 antigen Ig like domain NLY35_RS08430 PF00248 Aldo/keto reductase family NLY35_RS08435 PF06177 QueT transporter NLY35_RS08440 PF04138 GtrA-like protein NLY35_RS08450 PF00557 Metallopeptidase family M24 NLY35_RS08460 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NLY35_RS08465 PF02525 Flavodoxin-like fold NLY35_RS08470 PF00438 S-adenosylmethionine synthetase, N-terminal domain NLY35_RS08470 PF02773 S-adenosylmethionine synthetase, C-terminal domain NLY35_RS08470 PF02772 S-adenosylmethionine synthetase, central domain NLY35_RS08475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NLY35_RS08485 PF05343 M42 glutamyl aminopeptidase NLY35_RS08500 PF12169 DNA polymerase III subunits gamma and tau domain III NLY35_RS08505 PF13185 GAF domain NLY35_RS08520 PF00485 Phosphoribulokinase / Uridine kinase family NLY35_RS08525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NLY35_RS08530 PF00271 Helicase conserved C-terminal domain NLY35_RS08530 PF00270 DEAD/DEAH box helicase NLY35_RS08535 PF01522 Polysaccharide deacetylase NLY35_RS08535 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain NLY35_RS08545 PF00300 Histidine phosphatase superfamily (branch 1) NLY35_RS08550 PF02803 Thiolase, C-terminal domain NLY35_RS08550 PF00108 Thiolase, N-terminal domain NLY35_RS08555 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal NLY35_RS08555 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal NLY35_RS08560 PF00368 Hydroxymethylglutaryl-coenzyme A reductase NLY35_RS08570 PF00216 Bacterial DNA-binding protein NLY35_RS08580 PF13472 GDSL-like Lipase/Acylhydrolase family NLY35_RS08585 PF02645 Uncharacterised protein, DegV family COG1307 NLY35_RS08590 PF13476 AAA domain NLY35_RS08595 PF01316 Arginine repressor, DNA binding domain NLY35_RS08595 PF02863 Arginine repressor, C-terminal domain NLY35_RS08600 PF01728 FtsJ-like methyltransferase NLY35_RS08600 PF01479 S4 domain NLY35_RS08605 PF00348 Polyprenyl synthetase NLY35_RS08610 PF02609 Exonuclease VII small subunit NLY35_RS08615 PF02601 Exonuclease VII, large subunit NLY35_RS08615 PF13742 OB-fold nucleic acid binding domain NLY35_RS08620 PF04228 Putative neutral zinc metallopeptidase NLY35_RS08625 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NLY35_RS08630 PF00512 His Kinase A (phospho-acceptor) domain NLY35_RS08630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NLY35_RS08630 PF00672 HAMP domain NLY35_RS08635 PF00486 Transcriptional regulatory protein, C terminal NLY35_RS08635 PF00072 Response regulator receiver domain NLY35_RS08720 PF01381 Helix-turn-helix NLY35_RS08725 PF14659 Phage integrase, N-terminal SAM-like domain NLY35_RS08725 PF00589 Phage integrase family NLY35_RS08735 PF01368 DHH family NLY35_RS08735 PF02833 DHHA2 domain NLY35_RS08745 PF04055 Radical SAM superfamily NLY35_RS08750 PF00571 CBS domain NLY35_RS08750 PF03471 Transporter associated domain NLY35_RS08750 PF01595 Cyclin M transmembrane N-terminal domain NLY35_RS08755 PF00005 ABC transporter NLY35_RS08760 PF06962 Putative rRNA methylase NLY35_RS08770 PF01545 Cation efflux family NLY35_RS08770 PF16916 Dimerisation domain of Zinc Transporter NLY35_RS08780 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NLY35_RS08780 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NLY35_RS08780 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NLY35_RS08785 PF02540 NAD synthase NLY35_RS08790 PF00291 Pyridoxal-phosphate dependent enzyme NLY35_RS08800 PF04055 Radical SAM superfamily NLY35_RS08805 PF06265 Protein of unknown function (DUF1027) NLY35_RS08810 PF05362 Lon protease (S16) C-terminal proteolytic domain NLY35_RS08810 PF13180 PDZ domain NLY35_RS08815 PF01467 Cytidylyltransferase-like NLY35_RS08830 PF00581 Rhodanese-like domain NLY35_RS08835 PF06014 Bacterial protein of unknown function (DUF910) NLY35_RS08840 PF00072 Response regulator receiver domain NLY35_RS08840 PF00196 Bacterial regulatory proteins, luxR family NLY35_RS08845 PF07730 Histidine kinase NLY35_RS08845 PF13185 GAF domain NLY35_RS08855 PF00005 ABC transporter NLY35_RS08860 PF00210 Ferritin-like domain NLY35_RS08865 PF05532 CsbD-like NLY35_RS08870 PF01451 Low molecular weight phosphotyrosine protein phosphatase NLY35_RS08880 PF01757 Acyltransferase family NLY35_RS08885 PF01569 PAP2 superfamily NLY35_RS08890 PF12822 ECF transporter, substrate-specific component NLY35_RS08895 PF00588 SpoU rRNA Methylase family NLY35_RS08900 PF01809 Putative membrane protein insertion efficiency factor NLY35_RS08905 PF00849 RNA pseudouridylate synthase NLY35_RS08905 PF01479 S4 domain NLY35_RS08910 PF04079 Segregation and condensation complex subunit ScpB NLY35_RS08915 PF02616 Segregation and condensation protein ScpA NLY35_RS08920 PF00589 Phage integrase family NLY35_RS08935 PF01725 Ham1 family NLY35_RS08940 PF01177 Asp/Glu/Hydantoin racemase NLY35_RS08945 PF03672 Uncharacterised protein family (UPF0154) NLY35_RS08950 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NLY35_RS08950 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NLY35_RS08955 PF03051 Peptidase C1-like family NLY35_RS08960 PF01027 Inhibitor of apoptosis-promoting Bax1 NLY35_RS08970 PF00588 SpoU rRNA Methylase family NLY35_RS08970 PF08032 RNA 2'-O ribose methyltransferase substrate binding NLY35_RS08975 PF00708 Acylphosphatase NLY35_RS08980 PF02096 60Kd inner membrane protein NLY35_RS08985 PF03449 Transcription elongation factor, N-terminal NLY35_RS08985 PF01272 Transcription elongation factor, GreA/GreB, C-term NLY35_RS08990 PF02618 YceG-like family NLY35_RS09000 PF08245 Mur ligase middle domain NLY35_RS09000 PF02875 Mur ligase family, glutamate ligase domain NLY35_RS09000 PF01225 Mur ligase family, catalytic domain NLY35_RS09010 PF04434 SWIM zinc finger NLY35_RS09010 PF00271 Helicase conserved C-terminal domain NLY35_RS09010 PF00176 SNF2 family N-terminal domain NLY35_RS09025 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NLY35_RS09025 PF01926 50S ribosome-binding GTPase NLY35_RS09035 PF07319 Primosomal protein DnaI N-terminus NLY35_RS09035 PF01695 IstB-like ATP binding protein NLY35_RS09045 PF03477 ATP cone domain NLY35_RS09050 PF01594 AI-2E family transporter NLY35_RS09055 PF00072 Response regulator receiver domain NLY35_RS09055 PF00486 Transcriptional regulatory protein, C terminal NLY35_RS09060 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NLY35_RS09060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NLY35_RS09070 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS09080 PF00270 DEAD/DEAH box helicase NLY35_RS09080 PF00271 Helicase conserved C-terminal domain NLY35_RS09085 PF00953 Glycosyl transferase family 4 NLY35_RS09085 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NLY35_RS09090 PF03793 PASTA domain NLY35_RS09090 PF00905 Penicillin binding protein transpeptidase domain NLY35_RS09090 PF03717 Penicillin-binding Protein dimerisation domain NLY35_RS09100 PF01795 MraW methylase family NLY35_RS09140 PF02424 ApbE family NLY35_RS09145 PF04205 FMN-binding domain NLY35_RS09150 PF00348 Polyprenyl synthetase NLY35_RS09155 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS09165 PF02386 Cation transport protein NLY35_RS09170 PF02080 TrkA-C domain NLY35_RS09170 PF02254 TrkA-N domain NLY35_RS09175 PF01554 MatE NLY35_RS09185 PF05979 Bacterial protein of unknown function (DUF896) NLY35_RS09190 PF02092 Glycyl-tRNA synthetase beta subunit NLY35_RS09195 PF02091 Glycyl-tRNA synthetase alpha subunit NLY35_RS09210 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS09215 PF00005 ABC transporter NLY35_RS09215 PF09383 NIL domain NLY35_RS09220 PF01546 Peptidase family M20/M25/M40 NLY35_RS09220 PF07687 Peptidase dimerisation domain NLY35_RS09225 PF03180 NLPA lipoprotein NLY35_RS09230 PF07722 Peptidase C26 NLY35_RS09235 PF08267 Cobalamin-independent synthase, N-terminal domain NLY35_RS09235 PF01717 Cobalamin-independent synthase, Catalytic domain NLY35_RS09240 PF02219 Methylenetetrahydrofolate reductase NLY35_RS09245 PF00860 Permease family NLY35_RS09260 PF03830 PTS system sorbose subfamily IIB component NLY35_RS09260 PF03610 PTS system fructose IIA component NLY35_RS09265 PF03609 PTS system sorbose-specific iic component NLY35_RS09270 PF03613 PTS system mannose/fructose/sorbose family IID component NLY35_RS09280 PF02403 Seryl-tRNA synthetase N-terminal domain NLY35_RS09280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NLY35_RS09285 PF12161 HsdM N-terminal domain NLY35_RS09285 PF02384 N-6 DNA Methylase NLY35_RS09295 PF02661 Fic/DOC family NLY35_RS09295 PF12728 Helix-turn-helix domain NLY35_RS09305 PF12008 Type I restriction and modification enzyme - subunit R C terminal NLY35_RS09305 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NLY35_RS09305 PF18766 SWI2/SNF2 ATPase NLY35_RS09335 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NLY35_RS09340 PF01039 Carboxyl transferase domain NLY35_RS09345 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NLY35_RS09345 PF02785 Biotin carboxylase C-terminal domain NLY35_RS09345 PF00289 Biotin carboxylase, N-terminal domain NLY35_RS09350 PF07977 FabA-like domain NLY35_RS09355 PF00364 Biotin-requiring enzyme NLY35_RS09360 PF00109 Beta-ketoacyl synthase, N-terminal domain NLY35_RS09360 PF02801 Beta-ketoacyl synthase, C-terminal domain NLY35_RS09370 PF00698 Acyl transferase domain NLY35_RS09375 PF03060 Nitronate monooxygenase NLY35_RS09380 PF00550 Phosphopantetheine attachment site NLY35_RS09385 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NLY35_RS09385 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NLY35_RS09395 PF00378 Enoyl-CoA hydratase/isomerase NLY35_RS09400 PF13419 Haloacid dehalogenase-like hydrolase NLY35_RS09405 PF00696 Amino acid kinase family NLY35_RS09405 PF13840 ACT domain NLY35_RS09410 PF01168 Alanine racemase, N-terminal domain NLY35_RS09410 PF00842 Alanine racemase, C-terminal domain NLY35_RS09415 PF01648 4'-phosphopantetheinyl transferase superfamily NLY35_RS09420 PF02810 SEC-C motif NLY35_RS09420 PF07517 SecA DEAD-like domain NLY35_RS09420 PF01043 SecA preprotein cross-linking domain NLY35_RS09420 PF07516 SecA Wing and Scaffold domain NLY35_RS09430 PF00480 ROK family NLY35_RS09435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NLY35_RS09435 PF00367 phosphotransferase system, EIIB NLY35_RS09435 PF02378 Phosphotransferase system, EIIC NLY35_RS09440 PF08244 Glycosyl hydrolases family 32 C terminal NLY35_RS09440 PF00251 Glycosyl hydrolases family 32 N-terminal domain NLY35_RS09445 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS09450 PF01029 NusB family NLY35_RS09455 PF03780 Asp23 family, cell envelope-related function NLY35_RS09460 PF09285 Elongation factor P, C-terminal NLY35_RS09460 PF08207 Elongation factor P (EF-P) KOW-like domain NLY35_RS09460 PF01132 Elongation factor P (EF-P) OB domain NLY35_RS09465 PF00557 Metallopeptidase family M24 NLY35_RS09465 PF01321 Creatinase/Prolidase N-terminal domain NLY35_RS09470 PF17760 UvrA interaction domain NLY35_RS09470 PF17755 UvrA DNA-binding domain NLY35_RS09470 PF00005 ABC transporter NLY35_RS09485 PF01084 Ribosomal protein S18 NLY35_RS09490 PF00436 Single-strand binding protein family NLY35_RS09495 PF01250 Ribosomal protein S6 NLY35_RS09500 PF03099 Biotin/lipoate A/B protein ligase family NLY35_RS09500 PF10437 Bacterial lipoate protein ligase C-terminus NLY35_RS09505 PF00232 Glycosyl hydrolase family 1 NLY35_RS09515 PF00300 Histidine phosphatase superfamily (branch 1) NLY35_RS09520 PF00232 Glycosyl hydrolase family 1 NLY35_RS09525 PF02378 Phosphotransferase system, EIIC NLY35_RS09535 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NLY35_RS09540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NLY35_RS09540 PF08279 HTH domain NLY35_RS09540 PF05043 Mga helix-turn-helix domain NLY35_RS09540 PF00874 PRD domain NLY35_RS09545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS09555 PF04193 PQ loop repeat NLY35_RS09560 PF00232 Glycosyl hydrolase family 1 NLY35_RS09565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NLY35_RS09570 PF00232 Glycosyl hydrolase family 1 NLY35_RS09575 PF02311 AraC-like ligand binding domain NLY35_RS09575 PF12833 Helix-turn-helix domain NLY35_RS09585 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NLY35_RS09585 PF00367 phosphotransferase system, EIIB NLY35_RS09585 PF02378 Phosphotransferase system, EIIC NLY35_RS09590 PF00874 PRD domain NLY35_RS09590 PF03123 CAT RNA binding domain NLY35_RS09600 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS09600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NLY35_RS09605 PF02817 e3 binding domain NLY35_RS09605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NLY35_RS09605 PF00364 Biotin-requiring enzyme NLY35_RS09610 PF00364 Biotin-requiring enzyme NLY35_RS09610 PF02780 Transketolase, C-terminal domain NLY35_RS09610 PF02779 Transketolase, pyrimidine binding domain NLY35_RS09615 PF00676 Dehydrogenase E1 component NLY35_RS09620 PF03458 UPF0126 domain NLY35_RS09625 PF14262 Carbohydrate-binding domain-containing protein Cthe_2159 NLY35_RS09635 PF02033 Ribosome-binding factor A NLY35_RS09640 PF04760 Translation initiation factor IF-2, N-terminal region NLY35_RS09640 PF00009 Elongation factor Tu GTP binding domain NLY35_RS09640 PF11987 Translation-initiation factor 2 NLY35_RS09645 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NLY35_RS09650 PF04296 Protein of unknown function (DUF448) NLY35_RS09655 PF00575 S1 RNA binding domain NLY35_RS09655 PF08529 NusA N-terminal domain NLY35_RS09655 PF13184 NusA-like KH domain NLY35_RS09660 PF17384 RimP C-terminal SH3 domain NLY35_RS09660 PF02576 RimP N-terminal domain NLY35_RS09665 PF02390 Putative methyltransferase NLY35_RS09675 PF05975 Bacterial ABC transporter protein EcsB NLY35_RS09680 PF00005 ABC transporter NLY35_RS09685 PF01230 HIT domain NLY35_RS09695 PF03816 Cell envelope-related transcriptional attenuator domain NLY35_RS09705 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NLY35_RS09710 PF02734 DAK2 domain NLY35_RS09710 PF13684 Dihydroxyacetone kinase family NLY35_RS09715 PF03780 Asp23 family, cell envelope-related function NLY35_RS09725 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS09730 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS09735 PF00005 ABC transporter NLY35_RS09735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NLY35_RS09740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NLY35_RS09740 PF00005 ABC transporter NLY35_RS09745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NLY35_RS09755 PF07943 Penicillin-binding protein 5, C-terminal domain NLY35_RS09755 PF00768 D-alanyl-D-alanine carboxypeptidase NLY35_RS09760 PF01458 Uncharacterized protein family (UPF0051) NLY35_RS09765 PF01592 NifU-like N terminal domain NLY35_RS09770 PF00266 Aminotransferase class-V NLY35_RS09775 PF01458 Uncharacterized protein family (UPF0051) NLY35_RS09780 PF00005 ABC transporter NLY35_RS09785 PF00953 Glycosyl transferase family 4 NLY35_RS09790 PF05389 Negative regulator of genetic competence (MecA) NLY35_RS09795 PF02673 Bacitracin resistance protein BacA NLY35_RS09800 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS09805 PF00005 ABC transporter NLY35_RS09820 PF00585 C-terminal regulatory domain of Threonine dehydratase NLY35_RS09820 PF00291 Pyridoxal-phosphate dependent enzyme NLY35_RS09825 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NLY35_RS09825 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NLY35_RS09830 PF01842 ACT domain NLY35_RS09830 PF10369 Small subunit of acetolactate synthase NLY35_RS09835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NLY35_RS09835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NLY35_RS09835 PF00205 Thiamine pyrophosphate enzyme, central domain NLY35_RS09840 PF00535 Glycosyl transferase family 2 NLY35_RS09855 PF00920 Dehydratase family NLY35_RS09865 PF01883 Iron-sulfur cluster assembly protein NLY35_RS09885 PF00270 DEAD/DEAH box helicase NLY35_RS09885 PF13749 Putative ATP-dependent DNA helicase recG C-terminal NLY35_RS09885 PF17191 RecG wedge domain NLY35_RS09890 PF01381 Helix-turn-helix NLY35_RS09890 PF08671 Anti-repressor SinI NLY35_RS09910 PF00380 Ribosomal protein S9/S16 NLY35_RS09915 PF00572 Ribosomal protein L13 NLY35_RS09935 PF08032 RNA 2'-O ribose methyltransferase substrate binding NLY35_RS09935 PF00588 SpoU rRNA Methylase family NLY35_RS09950 PF00005 ABC transporter NLY35_RS09950 PF17912 MalK OB fold domain NLY35_RS09950 PF03459 TOBE domain NLY35_RS09955 PF13556 PucR C-terminal helix-turn-helix domain NLY35_RS09960 PF00636 Ribonuclease III domain NLY35_RS09965 PF09190 DALR domain NLY35_RS09965 PF01406 tRNA synthetases class I (C) catalytic domain NLY35_RS09980 PF00132 Bacterial transferase hexapeptide (six repeats) NLY35_RS09980 PF06426 Serine acetyltransferase, N-terminal NLY35_RS09985 PF00575 S1 RNA binding domain NLY35_RS09985 PF03725 3' exoribonuclease family, domain 2 NLY35_RS09985 PF01138 3' exoribonuclease family, domain 1 NLY35_RS09985 PF00013 KH domain NLY35_RS09985 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NLY35_RS10000 PF00312 Ribosomal protein S15 NLY35_RS10005 PF00005 ABC transporter NLY35_RS10025 PF00860 Permease family NLY35_RS10040 PF00849 RNA pseudouridylate synthase NLY35_RS10040 PF01479 S4 domain NLY35_RS10055 PF01327 Polypeptide deformylase NLY35_RS10065 PF00694 Aconitase C-terminal domain NLY35_RS10070 PF00330 Aconitase family (aconitate hydratase) NLY35_RS10075 PF00180 Isocitrate/isopropylmalate dehydrogenase NLY35_RS10080 PF00682 HMGL-like NLY35_RS10080 PF08502 LeuA allosteric (dimerisation) domain NLY35_RS10085 PF02378 Phosphotransferase system, EIIC NLY35_RS10100 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NLY35_RS10105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS10115 PF02073 Thermophilic metalloprotease (M29) NLY35_RS10130 PF14480 DNA polymerase III polC-type N-terminus I NLY35_RS10130 PF11490 DNA polymerase III polC-type N-terminus II NLY35_RS10130 PF07733 Bacterial DNA polymerase III alpha NTPase domain NLY35_RS10130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NLY35_RS10130 PF02811 PHP domain NLY35_RS10130 PF00929 Exonuclease NLY35_RS10135 PF02733 Dak1 domain NLY35_RS10145 PF02733 Dak1 domain NLY35_RS10150 PF02734 DAK2 domain NLY35_RS10155 PF03610 PTS system fructose IIA component NLY35_RS10160 PF00230 Major intrinsic protein NLY35_RS10165 PF03129 Anticodon binding domain NLY35_RS10165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NLY35_RS10165 PF04073 Aminoacyl-tRNA editing domain NLY35_RS10170 PF13180 PDZ domain NLY35_RS10170 PF02163 Peptidase family M50 NLY35_RS10180 PF01255 Putative undecaprenyl diphosphate synthase NLY35_RS10185 PF02699 Preprotein translocase subunit NLY35_RS10190 PF00709 Adenylosuccinate synthetase NLY35_RS10195 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NLY35_RS10195 PF04262 Glutamate-cysteine ligase NLY35_RS10195 PF18419 ATP-grasp-like domain NLY35_RS10205 PF01430 Hsp33 protein NLY35_RS10210 PF01207 Dihydrouridine synthase (Dus) NLY35_RS10215 PF01467 Cytidylyltransferase-like NLY35_RS10220 PF17871 AAA lid domain NLY35_RS10220 PF02861 Clp amino terminal domain, pathogenicity island component NLY35_RS10220 PF10431 C-terminal, D2-small domain, of ClpB protein NLY35_RS10220 PF07724 AAA domain (Cdc48 subfamily) NLY35_RS10220 PF00004 ATPase family associated with various cellular activities (AAA) NLY35_RS10225 PF05848 CtsR N-terminal HTH domain NLY35_RS10225 PF17727 CtsR C-terminal dimerization domain NLY35_RS10240 PF17802 Prealbumin-like fold domain NLY35_RS10240 PF05738 Cna protein B-type domain NLY35_RS10240 PF05737 Collagen binding domain NLY35_RS10245 PF17961 Bacterial Ig domain NLY35_RS10245 PF01476 LysM domain NLY35_RS10245 PF05737 Collagen binding domain NLY35_RS10250 PF00889 Elongation factor TS NLY35_RS10255 PF00318 Ribosomal protein S2 NLY35_RS10270 PF06280 Fn3-like domain NLY35_RS10270 PF00746 LPXTG cell wall anchor motif NLY35_RS10270 PF02225 PA domain NLY35_RS10270 PF00082 Subtilase family NLY35_RS10275 PF02357 Transcription termination factor nusG NLY35_RS10275 PF00467 KOW motif NLY35_RS10285 PF00471 Ribosomal protein L33 NLY35_RS10290 PF00905 Penicillin binding protein transpeptidase domain NLY35_RS10290 PF00912 Transglycosylase NLY35_RS10295 PF07992 Pyridine nucleotide-disulphide oxidoreductase NLY35_RS10300 PF01479 S4 domain NLY35_RS10300 PF00849 RNA pseudouridylate synthase NLY35_RS10305 PF09182 Bacterial purine repressor, N-terminal NLY35_RS10305 PF00156 Phosphoribosyl transferase domain NLY35_RS10315 PF01336 OB-fold nucleic acid binding domain NLY35_RS10315 PF01966 HD domain NLY35_RS10320 PF02646 RmuC family NLY35_RS10325 PF04263 Thiamin pyrophosphokinase, catalytic domain NLY35_RS10325 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain NLY35_RS10330 PF00834 Ribulose-phosphate 3 epimerase family NLY35_RS10335 PF16745 RsgA N-terminal domain NLY35_RS10335 PF03193 RsgA GTPase NLY35_RS10345 PF01548 Transposase NLY35_RS10345 PF02371 Transposase IS116/IS110/IS902 family NLY35_RS10355 PF02371 Transposase IS116/IS110/IS902 family NLY35_RS10355 PF01548 Transposase NLY35_RS10370 PF00398 Ribosomal RNA adenine dimethylase NLY35_RS10380 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system NLY35_RS10390 PF00293 NUDIX domain NLY35_RS10390 PF09297 NADH pyrophosphatase zinc ribbon domain NLY35_RS10390 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NLY35_RS10400 PF13331 Domain of unknown function (DUF4093) NLY35_RS10405 PF01026 TatD related DNase NLY35_RS10410 PF00468 Ribosomal protein L34 NLY35_RS10415 PF01424 R3H domain NLY35_RS10415 PF14804 Jag N-terminus NLY35_RS10420 PF02096 60Kd inner membrane protein NLY35_RS10425 PF00825 Ribonuclease P NLY35_RS10430 PF00206 Lyase NLY35_RS10430 PF14698 Argininosuccinate lyase C-terminal NLY35_RS10435 PF00764 Arginosuccinate synthase NLY35_RS10445 PF08279 HTH domain NLY35_RS10445 PF02829 3H domain NLY35_RS10470 PF00749 tRNA synthetases class I (E and Q), catalytic domain NLY35_RS10495 PF01987 Mitochondrial biogenesis AIM24 NLY35_RS10500 PF00484 Carbonic anhydrase NLY35_RS10505 PF18073 Rubredoxin metal binding domain NLY35_RS10515 PF00692 dUTPase NLY35_RS10520 PF00005 ABC transporter NLY35_RS10520 PF00664 ABC transporter transmembrane region NLY35_RS10525 PF00005 ABC transporter NLY35_RS10525 PF00664 ABC transporter transmembrane region NLY35_RS10535 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NLY35_RS10535 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NLY35_RS10540 PF00483 Nucleotidyl transferase NLY35_RS10545 PF01694 Rhomboid family NLY35_RS10550 PF01812 5-formyltetrahydrofolate cyclo-ligase family NLY35_RS10555 PF07687 Peptidase dimerisation domain NLY35_RS10555 PF01546 Peptidase family M20/M25/M40 NLY35_RS10560 PF00132 Bacterial transferase hexapeptide (six repeats) NLY35_RS10560 PF14602 Hexapeptide repeat of succinyl-transferase NLY35_RS10560 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal NLY35_RS10570 PF00149 Calcineurin-like phosphoesterase NLY35_RS10575 PF00342 Phosphoglucose isomerase NLY35_RS10590 PF14437 MafB19-like deaminase NLY35_RS10595 PF02780 Transketolase, C-terminal domain NLY35_RS10595 PF00456 Transketolase, thiamine diphosphate binding domain NLY35_RS10595 PF02779 Transketolase, pyrimidine binding domain NLY35_RS10615 PF00596 Class II Aldolase and Adducin N-terminal domain NLY35_RS10620 PF01261 Xylose isomerase-like TIM barrel NLY35_RS10625 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NLY35_RS10630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NLY35_RS10635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS10640 PF03611 PTS system sugar-specific permease component NLY35_RS10645 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NLY35_RS10645 PF17999 Pullulanase N1-terminal domain NLY35_RS10645 PF00128 Alpha amylase, catalytic domain NLY35_RS10650 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS10655 PF00005 ABC transporter NLY35_RS10660 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS10665 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS10670 PF05257 CHAP domain NLY35_RS10670 PF01476 LysM domain NLY35_RS10675 PF02378 Phosphotransferase system, EIIC NLY35_RS10685 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NLY35_RS10690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NLY35_RS10695 PF08279 HTH domain NLY35_RS10695 PF05043 Mga helix-turn-helix domain NLY35_RS10695 PF00874 PRD domain NLY35_RS10695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NLY35_RS10705 PF00232 Glycosyl hydrolase family 1 NLY35_RS10710 PF11975 Family 4 glycosyl hydrolase C-terminal domain NLY35_RS10710 PF02056 Family 4 glycosyl hydrolase NLY35_RS10715 PF09334 tRNA synthetases class I (M) NLY35_RS10715 PF13603 Leucyl-tRNA synthetase, Domain 2 NLY35_RS10715 PF00133 tRNA synthetases class I (I, L, M and V) NLY35_RS10715 PF08264 Anticodon-binding domain of tRNA NLY35_RS10720 PF05649 Peptidase family M13 NLY35_RS10720 PF01431 Peptidase family M13 NLY35_RS10725 PF00950 ABC 3 transport family NLY35_RS10730 PF00950 ABC 3 transport family NLY35_RS10735 PF00005 ABC transporter NLY35_RS10745 PF01297 Zinc-uptake complex component A periplasmic NLY35_RS10765 PF02580 D-Tyr-tRNA(Tyr) deacylase NLY35_RS10770 PF13291 ACT domain NLY35_RS10770 PF04607 Region found in RelA / SpoT proteins NLY35_RS10770 PF02824 TGS domain NLY35_RS10775 PF02872 5'-nucleotidase, C-terminal domain NLY35_RS10775 PF00149 Calcineurin-like phosphoesterase NLY35_RS10795 PF04452 RNA methyltransferase NLY35_RS10820 PF16193 AAA C-terminal domain NLY35_RS10820 PF12002 MgsA AAA+ ATPase C terminal NLY35_RS10820 PF05496 Holliday junction DNA helicase RuvB P-loop domain NLY35_RS10845 PF00149 Calcineurin-like phosphoesterase NLY35_RS10845 PF02872 5'-nucleotidase, C-terminal domain NLY35_RS10850 PF03477 ATP cone domain NLY35_RS10850 PF13597 Anaerobic ribonucleoside-triphosphate reductase NLY35_RS10855 PF00005 ABC transporter NLY35_RS10860 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS10865 PF00497 Bacterial extracellular solute-binding proteins, family 3 NLY35_RS10885 PF00488 MutS domain V NLY35_RS10885 PF05190 MutS family domain IV NLY35_RS10885 PF05192 MutS domain III NLY35_RS10885 PF05188 MutS domain II NLY35_RS10885 PF01624 MutS domain I NLY35_RS10890 PF02863 Arginine repressor, C-terminal domain NLY35_RS10890 PF01316 Arginine repressor, DNA binding domain NLY35_RS10895 PF05746 DALR anticodon binding domain NLY35_RS10895 PF00750 tRNA synthetases class I (R) NLY35_RS10895 PF03485 Arginyl tRNA synthetase N terminal domain NLY35_RS10915 PF02446 4-alpha-glucanotransferase NLY35_RS10925 PF13416 Bacterial extracellular solute-binding protein NLY35_RS10930 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS10935 PF00528 Binding-protein-dependent transport system inner membrane component NLY35_RS10945 PF00356 Bacterial regulatory proteins, lacI family NLY35_RS10945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NLY35_RS10950 PF17999 Pullulanase N1-terminal domain NLY35_RS10950 PF00128 Alpha amylase, catalytic domain NLY35_RS10950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NLY35_RS10955 PF07972 NrdI Flavodoxin like NLY35_RS10960 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NLY35_RS10960 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NLY35_RS10965 PF00152 tRNA synthetases class II (D, K and N) NLY35_RS10965 PF01336 OB-fold nucleic acid binding domain NLY35_RS10965 PF02938 GAD domain NLY35_RS10970 PF13673 Acetyltransferase (GNAT) domain NLY35_RS10975 PF00248 Aldo/keto reductase family NLY35_RS10980 PF00535 Glycosyl transferase family 2 NLY35_RS10990 PF14537 Cytochrome c3 NLY35_RS10990 PF00890 FAD binding domain NLY35_RS11000 PF01479 S4 domain NLY35_RS11000 PF00163 Ribosomal protein S4/S9 N-terminal domain NLY35_RS11010 PF03796 DnaB-like helicase C terminal domain NLY35_RS11010 PF00772 DnaB-like helicase N terminal domain NLY35_RS11015 PF01281 Ribosomal protein L9, N-terminal domain NLY35_RS11015 PF03948 Ribosomal protein L9, C-terminal domain NLY35_RS11020 PF01368 DHH family NLY35_RS11020 PF02272 DHHA1 domain NLY35_RS11025 PF13932 GidA associated domain NLY35_RS11025 PF01134 Glucose inhibited division protein A NLY35_RS11030 PF00293 NUDIX domain NLY35_RS11035 PF01638 HxlR-like helix-turn-helix NLY35_RS11050 PF01842 ACT domain NLY35_RS11050 PF03315 Serine dehydratase beta chain NLY35_RS11055 PF03313 Serine dehydratase alpha chain NLY35_RS11065 PF02361 Cobalt transport protein NLY35_RS11070 PF00005 ABC transporter NLY35_RS11075 PF00005 ABC transporter NLY35_RS11080 PF01066 CDP-alcohol phosphatidyltransferase NLY35_RS11085 PF13464 Domain of unknown function (DUF4115) NLY35_RS11090 PF05193 Peptidase M16 inactive domain NLY35_RS11090 PF00675 Insulinase (Peptidase family M16) NLY35_RS11095 PF05193 Peptidase M16 inactive domain NLY35_RS11185 PF14659 Phage integrase, N-terminal SAM-like domain NLY35_RS11185 PF00589 Phage integrase family NLY35_RS11195 PF02463 RecF/RecN/SMC N terminal domain NLY35_RS11200 PF00571 CBS domain NLY35_RS11200 PF00478 IMP dehydrogenase / GMP reductase domain NLY35_RS11205 PF00579 tRNA synthetases class I (W and Y) NLY35_RS11210 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NLY35_RS11210 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NLY35_RS11215 PF00005 ABC transporter NLY35_RS11215 PF12848 ABC transporter NLY35_RS11245 PF02590 Predicted SPOUT methyltransferase NLY35_RS11250 PF13180 PDZ domain NLY35_RS11255 PF17762 HTH domain found in ParB protein NLY35_RS11255 PF02195 ParB-like nuclease domain