locus_tag old_locus_tag gene Name start end strand product note type ID NCBI KGG96_gp01 CPT_Sitrop_001 KGG96_gp01 2 1661 + terminase large subunit sp|Q05219.1| RecName: Full%3DGene 13 protein%3B AltName: Full%3DGp13 [Mycobacterium virus L5] evalue 2.87901e-141%3B Terminase Mycobacterium virus L5 eScore 2.87901e-141 gene gene-KGG96_gp01 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp01 KGG96_gp02 CPT_Sitrop_002 KGG96_gp02 1678 3128 + portal protein sp|Q05220.1| RecName: Full%3DPortal protein%3B AltName: Full%3DGene product 14%3B Short%3Dgp14%3B AltName: Full%3DPortal vertex protein [Mycobacterium virus L5] 1.94799e-10 gene gene-KGG96_gp02 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp02 KGG96_gp03 CPT_Sitrop_003 KGG96_gp03 3110 4225 + hypothetical protein gene gene-KGG96_gp03 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp03 KGG96_gp04 CPT_Sitrop_004 KGG96_gp04 4215 4773 + scaffolding protein HHpred 6B0X_a Major head protein%2C Scaffold protein%3B major capsid protein%2C HK97-like fold%3B 3.72A {Staphylococcus phage 80alpha 97.6%25 0.002 gene gene-KGG96_gp04 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp04 KGG96_gp05 CPT_Sitrop_005 KGG96_gp05 4838 5879 + major capsid protein Possibly truncated at current genome opening site. HHpred 5UU5_A Major capsid protein%3B P22 Bacteriophage%2C VIRUS%3B 3.3A {Salmonella phage P22 99.35%25 2.1e-12 gene gene-KGG96_gp05 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp05 KGG96_gp06 CPT_Sitrop_006 KGG96_gp06 5937 6409 + head-to-tail connector complex protein HHpred 5A21_D PORTAL PROTEIN BACILLUS PHAGE SPP1 98.1%25 6.7e-7 gene gene-KGG96_gp06 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp06 KGG96_gp07 CPT_Sitrop_007 KGG96_gp07 6392 6741 + head-to-tail connector complex protein HHpred 5A21_F PORTAL PROTEIN BACILLUS PHAGE SPP1 99.54%25 3.1e-13 gene gene-KGG96_gp07 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp07 KGG96_gp08 CPT_Sitrop_008 KGG96_gp08 6732 7130 + hypothetical protein gene gene-KGG96_gp08 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp08 KGG96_gp09 CPT_Sitrop_009 KGG96_gp09 7114 7633 + head-to-tail connector complex protein HHpred 5A21_G PORTAL PROTEIN BACILLUS PHAGE SPP1 98.67%25 4.4e-7 gene gene-KGG96_gp09 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp09 KGG96_gp10 CPT_Sitrop_010 KGG96_gp10 7637 8207 + hypothetical protein ref|NP_039687.1 Hypothetical Protein Mycobacterium virus L5 3.7e-17 gene gene-KGG96_gp10 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp10 KGG96_gp11 CPT_Sitrop_012 KGG96_gp11 8324 9050 + tape measure chaperone tape measure chaperone frameshift product gene gene-KGG96_gp11 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp11 KGG96_gp12 CPT_Sitrop_011 KGG96_gp12 8324 8664 + tape measure chaperone gene gene-KGG96_gp12 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp12 KGG96_gp13 CPT_Sitrop_013 KGG96_gp13 9042 13166 + tape measure protein ref|NP_039690.1| Tapemeasure [Mycobacterium virus L5ref|NP_039690.1 Tapemeasure Mycobacterium virus L5 3.6e-7%3B Multiple canonical and SwissProt hits to tapemeasure proteins gene gene-KGG96_gp13 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp13 KGG96_gp14 CPT_Sitrop_014 KGG96_gp14 13154 14023 + minor tail protein HHpred 2X8K_A VIRAL PROTEIN%2C DISTAL TAIL PROTEIN BACILLUS PHAGE SPP1 99.96%25 9.6e-28 gene gene-KGG96_gp14 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp14 KGG96_gp15 CPT_Sitrop_015 KGG96_gp15 14014 15245 + minor tail protein HHpred 6V8I_AE Distal Tail Protein%2C gp58%2C Tail-Associated%3B phage tail%2C tail tip Staphylococcus virus 80alpha 99.76%25 7.7e-16 gene gene-KGG96_gp15 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp15 KGG96_gp16 CPT_Sitrop_016 KGG96_gp16 15234 15554 + hypothetical protein gene gene-KGG96_gp16 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp16 KGG96_gp17 CPT_Sitrop_017 KGG96_gp17 15539 17611 + hypothetical protein gene gene-KGG96_gp17 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp17 KGG96_gp18 CPT_Sitrop_018 KGG96_gp18 17634 18050 + hypothetical protein gene gene-KGG96_gp18 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp18 KGG96_gp19 CPT_Sitrop_019 KGG96_gp19 18086 18488 + hypothetical protein gene gene-KGG96_gp19 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp19 KGG96_gp20 CPT_Sitrop_020 KGG96_gp20 18547 19838 + hypothetical protein QEQ94057.1 tail fiber [Streptomyces phage Saftant] evalue 0%3B PF13884 gene gene-KGG96_gp20 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp20 KGG96_gp21 CPT_Sitrop_021 KGG96_gp21 19821 20227 + hypothetical protein QEQ94058.1 membrane protein [Streptomyces phage Saftant] evalue 2e-63 gene gene-KGG96_gp21 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp21 KGG96_gp22 CPT_Sitrop_022 KGG96_gp22 20285 21125 + endolysin endopeptidase QEQ94059.1 Select seq gb|QEQ94059.1 lysin A [Streptomyces phage Saftant] evalue 5e-125%3B PF05257%3B HHpred: Phage-associated cell wall hydrolase%3B lysin%2C d-alanyl-l-alanine endopeptidase%2C CHAP domain%3B HET: GOL%3B 1.971A {Streptococcus pyogenes MGAS5005}%3B Related PDB entries: 5UDM_B 5UDM_A 5UDN_A gene gene-KGG96_gp22 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp22 KGG96_gp23 CPT_Sitrop_023 KGG96_gp23 21114 21403 + hypothetical protein gene gene-KGG96_gp23 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp23 KGG96_gp24 CPT_Sitrop_024 KGG96_gp24 21513 21622 + hypothetical protein gene gene-KGG96_gp24 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp24 KGG96_gp25 CPT_Sitrop_025 KGG96_gp25 21638 21867 + hypothetical protein gene gene-KGG96_gp25 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp25 KGG96_gp26 CPT_Sitrop_026 KGG96_gp26 21881 22347 + immunity repressor sp|Q05286.1| RecName: Full%3DRepressor-like immunity protein%3B AltName: Full%3DGp71 [Mycobacterium virus L5] evalue 9.60844e-5 gene gene-KGG96_gp26 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp26 KGG96_gp27 CPT_Sitrop_027 KGG96_gp27 22529 22973 + hypothetical protein gene gene-KGG96_gp27 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp27 KGG96_gp28 CPT_Sitrop_028 KGG96_gp28 22980 23871 + helicase HHpred 3U4Q_B ATP-dependent helicase/nuclease subunit A Bacillus subtilis 97.63%25 0.00031 gene gene-KGG96_gp28 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp28 KGG96_gp29 CPT_Sitrop_029 KGG96_gp29 23999 24498 + hypothetical protein gene gene-KGG96_gp29 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp29 KGG96_gp30 CPT_Sitrop_030 KGG96_gp30 24555 25001 + hypothetical protein gene gene-KGG96_gp30 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp30 KGG96_gp31 CPT_Sitrop_031 KGG96_gp31 25066 25480 + deoxycytidylate deaminase sp|O22000|DCTD_BPMD2 Deoxycytidylate deaminase OS%3DMycobacterium phage D29 OX%3D28369 GN%3D36.1 PE%3D3 SV%3D2 (evalue 2.8369e-24)%3B pdb|1VQ2|A Chain A%2C Deoxycytidylate Deaminase Escherichia virus T4 2.3e-14 over most of gene gene gene-KGG96_gp31 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp31 KGG96_gp32 CPT_Sitrop_032 KGG96_gp32 25468 26373 + DnaB-like helicase sp|Q05279.1| RecName: Full%3DGene 65 protein%3B AltName: Full%3DGp65 [Mycobacterium virus L5]%3B ref|NP_039729.1| DnaB-like helicase [Mycobacterium virus L5 6.1e-30 gene gene-KGG96_gp32 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp32 KGG96_gp33 CPT_Sitrop_033 KGG96_gp33 26437 26812 + holliday junction endonuclease ATW61313.1 holliday junction resolvase [Streptomyces phage Alsaber] evalue 1e-77%3B HHpred 2WCW_D TYPE II RESTRICTION ENDONUCLEASE%2C HYDROLASE%3B ARCHAEOGLOBUS FULGIDUS 99.18%25 1.4e-9 gene gene-KGG96_gp33 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp33 KGG96_gp34 CPT_Sitrop_034 KGG96_gp34 26795 26958 + hypothetical protein gene gene-KGG96_gp34 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp34 KGG96_gp35 CPT_Sitrop_035 KGG96_gp35 26949 27395 + DNA primase sp|Q05271.1| RecName: Full%3DGene 58 protein%3B AltName: Full%3DGp58 [Mycobacterium virus L5] evalue 5.42863e-8 gene gene-KGG96_gp35 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp35 KGG96_gp36 CPT_Sitrop_036 KGG96_gp36 27472 27894 + DNA primase ref NP_039721.1 DNA primase Mycobacterium virus L5 2.439e-23 over most of gene gene gene-KGG96_gp36 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp36 KGG96_gp37 CPT_Sitrop_037 KGG96_gp37 27879 28238 + hypothetical protein gene gene-KGG96_gp37 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp37 KGG96_gp38 CPT_Sitrop_038 KGG96_gp38 28225 28447 + hypothetical protein gene gene-KGG96_gp38 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp38 KGG96_gp39 CPT_Sitrop_039 KGG96_gp39 28418 29618 + hypothetical protein QEQ94075.1 Select seq gb|QEQ94075.1 exonuclease [Streptomyces phage Saftant] evalue 0 gene gene-KGG96_gp39 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp39 KGG96_gp40 CPT_Sitrop_040 KGG96_gp40 29602 29968 + hypothetical protein gene gene-KGG96_gp40 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp40 KGG96_gp41 CPT_Sitrop_041 KGG96_gp41 29959 30364 + RNA polymerase sigma factor BLAST shows sigma70 r4 superfamily conserved domain%3B HHpred 5WUR_A ECF RNA polymerase sigma factor%3B Bacillus subtilis subsp. subtilis str. 168 gene gene-KGG96_gp41 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp41 KGG96_gp42 CPT_Sitrop_042 KGG96_gp42 30348 30729 + hypothetical protein gene gene-KGG96_gp42 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp42 KGG96_gp43 CPT_Sitrop_043 KGG96_gp43 30816 32894 + ribonucleoside-triphosphate reductase%2C adenosylcobalamin-dependent sp|Q05262.1| RecName: Full%3DPutative adenosylcobalamin-dependent ribonucleoside-triphosphate reductase%3B AltName: Full%3DGp50 [Mycobacterium virus L5] evalue 0 gene gene-KGG96_gp43 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp43 KGG96_gp44 CPT_Sitrop_044 KGG96_gp44 32925 33104 + hypothetical protein gene gene-KGG96_gp44 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp44 KGG96_gp45 CPT_Sitrop_045 KGG96_gp45 33183 33510 + hypothetical protein gnl|BL_ORD_ID|226053 sp|P24094|LSR2_MYCLE Nucleoid-associated protein Lsr2 OS%3DMycobacterium leprae (strain TN) OX%3D272631 GN%3Dlsr2 PE%3D3 SV%3D2 (evalue 6.40435e-18)%3B YP_009287834.1 gene gene-KGG96_gp45 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp45 KGG96_gp46 CPT_Sitrop_046 KGG96_gp46 34049 35596 + integrase PTHR30461%3B ref|NP_112664.1| INT [Lactococcus phage TP901-1] 5.13044e-21 over most of gene gene gene-KGG96_gp46 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp46 KGG96_gp47 CPT_Sitrop_047 KGG96_gp47 35784 36473 - flavin-dependent thymidylate synthase gnl|BL_ORD_ID|477039 sp|Q82K86|THYX_STRAW Flavin-dependent thymidylate synthase OS%3DStreptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX%3D227882 GN%3DthyX PE%3D3 SV%3D1%3B Multispecies%2C low E full coverage hits to flavin-dependent thymidylate synthase gene gene-KGG96_gp47 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp47 KGG96_gp48 CPT_Sitrop_048 KGG96_gp48 36500 37017 - hypothetical protein gene gene-KGG96_gp48 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp48 KGG96_gp49 CPT_Sitrop_049 KGG96_gp49 37047 37312 - hypothetical protein gene gene-KGG96_gp49 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp49 KGG96_gp50 CPT_Sitrop_050 KGG96_gp50 37301 37540 - hypothetical protein gene gene-KGG96_gp50 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp50 KGG96_gp51 CPT_Sitrop_051 KGG96_gp51 37522 37780 - hypothetical protein gene gene-KGG96_gp51 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp51 KGG96_gp52 CPT_Sitrop_052 KGG96_gp52 37781 38222 - hypothetical protein gene gene-KGG96_gp52 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp52 KGG96_gp53 CPT_Sitrop_053 KGG96_gp53 38272 38700 - hypothetical protein gene gene-KGG96_gp53 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp53 KGG96_gp54 CPT_Sitrop_054 KGG96_gp54 38726 39335 - dNMP kinase gb|AAU05195.1| deoxyribonucleoside monophosphate kinase [Escherichia virus T5] evalue 5.3071e-7 gene gene-KGG96_gp54 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp54 KGG96_gp55 CPT_Sitrop_055 KGG96_gp55 39319 39595 - hypothetical protein gene gene-KGG96_gp55 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp55 KGG96_gp56 CPT_Sitrop_056 KGG96_gp56 39579 40096 - helix-turn-helix domain-containing protein near C-term HTH domain detected by HHpred HNH catalytic motif%2C Helix-turn-helix Bacillus phage SPO1 99.2%25 gene gene-KGG96_gp56 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp56 KGG96_gp57 CPT_Sitrop_057 KGG96_gp57 40190 40425 - hypothetical protein gene gene-KGG96_gp57 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp57 KGG96_gp58 CPT_Sitrop_058 KGG96_gp58 40479 40762 - hypothetical protein gene gene-KGG96_gp58 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp58 KGG96_gp59 CPT_Sitrop_059 KGG96_gp59 40849 41074 - hypothetical protein gene gene-KGG96_gp59 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp59 KGG96_gp60 CPT_Sitrop_060 KGG96_gp60 41079 41457 - hypothetical protein gene gene-KGG96_gp60 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp60 KGG96_gp61 CPT_Sitrop_078 KGG96_gp61 48039 48480 + hypothetical protein gene gene-KGG96_gp61 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp61 KGG96_gp62 CPT_Sitrop_077 KGG96_gp62 47911 48030 + hypothetical protein gene gene-KGG96_gp62 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp62 KGG96_gp63 CPT_Sitrop_076 KGG96_gp63 47519 47758 + hypothetical protein gene gene-KGG96_gp63 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp63 KGG96_gp64 CPT_Sitrop_075 KGG96_gp64 47297 47531 + hypothetical protein gene gene-KGG96_gp64 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp64 KGG96_gp65 CPT_Sitrop_074 KGG96_gp65 46616 47146 + HNH endonuclease ref|NP_039671.1| HNH endonuclease [Mycobacterium virus L5] 2.26469e-15 gene gene-KGG96_gp65 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp65 KGG96_gp66 CPT_Sitrop_073 KGG96_gp66 46154 46391 + hypothetical protein gene gene-KGG96_gp66 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp66 KGG96_gp67 CPT_Sitrop_072 KGG96_gp67 45971 46179 - hypothetical protein gene gene-KGG96_gp67 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp67 KGG96_gp68 CPT_Sitrop_071 KGG96_gp68 45168 45800 - hypothetical protein gene gene-KGG96_gp68 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp68 KGG96_gp69 CPT_Sitrop_070 KGG96_gp69 44638 45019 - putative acetyltransferase HHpred 3BLN_A NP_981174.1%2C acetyltransferase Bacillus cereus 99.23%25 7.3e-10. many other good hits to non-phage acetyltransferases gene gene-KGG96_gp69 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp69 KGG96_gp70 CPT_Sitrop_069 KGG96_gp70 44417 44547 - hypothetical protein gene gene-KGG96_gp70 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp70 KGG96_gp71 CPT_Sitrop_068 KGG96_gp71 44279 44413 - hypothetical protein gene gene-KGG96_gp71 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp71 KGG96_gp72 CPT_Sitrop_067 KGG96_gp72 43549 44197 - hypothetical protein gene gene-KGG96_gp72 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp72 KGG96_gp73 CPT_Sitrop_066 KGG96_gp73 43307 43476 - hypothetical protein gene gene-KGG96_gp73 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp73 KGG96_gp74 CPT_Sitrop_065 KGG96_gp74 42891 43317 - hypothetical protein gene gene-KGG96_gp74 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp74 KGG96_gp75 CPT_Sitrop_064 KGG96_gp75 42560 42819 - hypothetical protein gene gene-KGG96_gp75 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp75 KGG96_gp76 CPT_Sitrop_063 KGG96_gp76 42096 42520 - hypothetical protein gene gene-KGG96_gp76 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp76 KGG96_gp77 CPT_Sitrop_062 KGG96_gp77 41542 42026 - hypothetical protein gene gene-KGG96_gp77 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gp77 KGG96_gt01 CPT_Sitrop_061 KGG96_gt01 41493 41575 - tRNA-Arg tRNA gene-KGG96_gt01 http://www.ncbi.nlm.nih.gov/gene/?term=KGG96_gt01