BFF78_RS00090	SM00662	RNA polymerases D
BFF78_RS00115	SM00420	helix_turn_helix, Deoxyribose operon repressor
BFF78_RS00120	SM00532	Ligase N family
BFF78_RS00125	SM00829	Enoylreductase
BFF78_RS00130	SM00860	SMI1 / KNR4 family
BFF78_RS00270	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS00430	SM00829	Enoylreductase
BFF78_RS00485	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS00610	SM00480	DNA polymerase III beta subunit
BFF78_RS00650	SM00320	WD40 repeats
BFF78_RS00675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS00700	SM00320	WD40 repeats
BFF78_RS00715	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS00745	SM00822	BFF78_RS00745
BFF78_RS00745	SM00823	Phosphopantetheine attachment site
BFF78_RS00745	SM00825	Beta-ketoacyl synthase
BFF78_RS00745	SM00826	BFF78_RS00745
BFF78_RS00745	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS00745	SM01294	BFF78_RS00745
BFF78_RS00770	SM00822	BFF78_RS00770
BFF78_RS00770	SM00823	Phosphopantetheine attachment site
BFF78_RS00770	SM00824	Thioesterase
BFF78_RS00770	SM00825	Beta-ketoacyl synthase
BFF78_RS00770	SM00826	BFF78_RS00770
BFF78_RS00770	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS00775	SM00822	BFF78_RS00775
BFF78_RS00775	SM00823	Phosphopantetheine attachment site
BFF78_RS00775	SM00825	Beta-ketoacyl synthase
BFF78_RS00775	SM00826	BFF78_RS00775
BFF78_RS00775	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS00775	SM01294	BFF78_RS00775
BFF78_RS00780	SM00822	BFF78_RS00780
BFF78_RS00780	SM00823	Phosphopantetheine attachment site
BFF78_RS00780	SM00825	Beta-ketoacyl synthase
BFF78_RS00780	SM00826	BFF78_RS00780
BFF78_RS00780	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS00780	SM00829	Enoylreductase
BFF78_RS00780	SM01294	BFF78_RS00780
BFF78_RS00785	SM00822	BFF78_RS00785
BFF78_RS00785	SM00823	Phosphopantetheine attachment site
BFF78_RS00785	SM00825	Beta-ketoacyl synthase
BFF78_RS00785	SM00826	BFF78_RS00785
BFF78_RS00785	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS00785	SM01294	BFF78_RS00785
BFF78_RS00790	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS00800	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS01050	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS01070	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS01175	SM00028	Tetratricopeptide repeats
BFF78_RS01175	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS01175	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS01175	SM01043	Bacterial transcriptional activator domain
BFF78_RS01185	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS01325	SM00822	BFF78_RS01325
BFF78_RS01340	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS01355	SM00829	Enoylreductase
BFF78_RS01375	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS01380	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS01410	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS01520	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS01570	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS01600	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS01625	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS01625	SM00749	bacterial OsmY and nodulation domain
BFF78_RS01665	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS01740	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS01760	SM00822	BFF78_RS01760
BFF78_RS01765	SM00822	BFF78_RS01765
BFF78_RS01775	SM00882	Coenzyme A transferase
BFF78_RS01780	SM00882	Coenzyme A transferase
BFF78_RS01795	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BFF78_RS01820	SM00736	Dystroglycan-type cadherin-like domains.
BFF78_RS01910	SM00320	WD40 repeats
BFF78_RS01910	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS01940	SM00245	tail specific protease
BFF78_RS01945	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS01960	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS02005	SM00855	Phosphoglycerate mutase family
BFF78_RS02025	SM00450	Rhodanese Homology Domain
BFF78_RS02030	SM00450	Rhodanese Homology Domain
BFF78_RS02030	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS02035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS02035	SM00866	BFF78_RS02035
BFF78_RS02090	SM00028	Tetratricopeptide repeats
BFF78_RS02165	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS02235	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS02235	SM00091	PAS domain
BFF78_RS02235	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS02250	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BFF78_RS02320	SM00836	DALR anticodon binding domain
BFF78_RS02320	SM01016	Arginyl tRNA synthetase N terminal dom
BFF78_RS02325	SM01119	BFF78_RS02325
BFF78_RS02345	SM00387	Histidine kinase-like ATPases
BFF78_RS02405	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS02410	SM00387	Histidine kinase-like ATPases
BFF78_RS02415	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS02415	SM00448	cheY-homologous receiver domain
BFF78_RS02430	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS02445	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BFF78_RS02450	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS02505	SM00422	helix_turn_helix, mercury resistance
BFF78_RS02575	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS02575	SM01086	C-terminal, D2-small domain, of ClpB protein
BFF78_RS02600	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BFF78_RS02620	SM00773	Proposed nucleic acid binding domain
BFF78_RS02640	SM00822	BFF78_RS02640
BFF78_RS02645	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS02660	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS02685	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS02695	SM00245	tail specific protease
BFF78_RS02725	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS02725	SM00895	BFF78_RS02725
BFF78_RS02730	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS02830	SM00458	Ricin-type beta-trefoil
BFF78_RS02840	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS02850	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS02850	SM00091	PAS domain
BFF78_RS02850	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS02855	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS02855	SM00091	PAS domain
BFF78_RS02855	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS02870	SM00822	BFF78_RS02870
BFF78_RS02975	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS02990	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
BFF78_RS03005	SM01060	BFF78_RS03005
BFF78_RS03015	SM01012	BFF78_RS03015
BFF78_RS03020	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS03080	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS03095	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS03100	SM00822	BFF78_RS03100
BFF78_RS03115	SM00495	Chitin-binding domain type 3
BFF78_RS03130	SM00878	Biotin carboxylase C-terminal domain
BFF78_RS03165	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS03185	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS03265	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS03265	SM00091	PAS domain
BFF78_RS03265	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS03270	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS03270	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS03330	SM00014	Acid phosphatase homologues
BFF78_RS03335	SM00014	Acid phosphatase homologues
BFF78_RS03340	SM00448	cheY-homologous receiver domain
BFF78_RS03340	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS03345	SM00387	Histidine kinase-like ATPases
BFF78_RS03345	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS03420	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS03420	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS03420	SM01012	BFF78_RS03420
BFF78_RS03425	SM00903	Flavin reductase like domain
BFF78_RS03515	SM00822	BFF78_RS03515
BFF78_RS03525	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS03530	SM00829	Enoylreductase
BFF78_RS03535	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS03545	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS03575	SM00829	Enoylreductase
BFF78_RS03595	SM00889	Elongation factor G, domain IV
BFF78_RS03605	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BFF78_RS03610	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BFF78_RS03615	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS03620	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS03645	SM00822	BFF78_RS03645
BFF78_RS03650	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFF78_RS03660	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS03710	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS03710	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFF78_RS03710	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS03715	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS03715	SM01260	BFF78_RS03715
BFF78_RS03725	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS03735	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS03740	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS03740	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS03765	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS03770	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS03795	SM00822	BFF78_RS03795
BFF78_RS03805	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS03815	SM01236	BFF78_RS03815
BFF78_RS03825	SM00704	CDGSH-type zinc finger. Function unknown.
BFF78_RS03835	SM00458	Ricin-type beta-trefoil
BFF78_RS03870	SM00091	PAS domain
BFF78_RS03870	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS03880	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS03895	SM00458	Ricin-type beta-trefoil
BFF78_RS03905	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS04000	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS04005	SM00829	Enoylreductase
BFF78_RS04015	SM01400	BFF78_RS04015
BFF78_RS04060	SM00458	Ricin-type beta-trefoil
BFF78_RS04070	SM00481	DNA polymerase alpha chain like domain
BFF78_RS04100	SM00091	PAS domain
BFF78_RS04100	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS04190	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS04215	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS04260	SM00387	Histidine kinase-like ATPases
BFF78_RS04260	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS04270	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS04290	SM00205	Thaumatin family
BFF78_RS04340	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS04415	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS04440	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS04480	SM00100	Cyclic nucleotide-monophosphate binding domain
BFF78_RS04485	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS04485	SM00448	cheY-homologous receiver domain
BFF78_RS04495	SM00824	Thioesterase
BFF78_RS04505	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS04510	SM01043	Bacterial transcriptional activator domain
BFF78_RS04530	SM00829	Enoylreductase
BFF78_RS04535	SM00822	BFF78_RS04535
BFF78_RS04535	SM00823	Phosphopantetheine attachment site
BFF78_RS04535	SM00824	Thioesterase
BFF78_RS04535	SM00825	Beta-ketoacyl synthase
BFF78_RS04535	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS04535	SM01294	BFF78_RS04535
BFF78_RS04540	SM00822	BFF78_RS04540
BFF78_RS04540	SM00823	Phosphopantetheine attachment site
BFF78_RS04540	SM00825	Beta-ketoacyl synthase
BFF78_RS04540	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS04540	SM01294	BFF78_RS04540
BFF78_RS04545	SM00822	BFF78_RS04545
BFF78_RS04545	SM00823	Phosphopantetheine attachment site
BFF78_RS04545	SM00825	Beta-ketoacyl synthase
BFF78_RS04545	SM00826	BFF78_RS04545
BFF78_RS04545	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS04545	SM01294	BFF78_RS04545
BFF78_RS04550	SM00822	BFF78_RS04550
BFF78_RS04550	SM00823	Phosphopantetheine attachment site
BFF78_RS04550	SM00825	Beta-ketoacyl synthase
BFF78_RS04550	SM00826	BFF78_RS04550
BFF78_RS04550	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS04550	SM01294	BFF78_RS04550
BFF78_RS04555	SM00825	Beta-ketoacyl synthase
BFF78_RS04555	SM00826	BFF78_RS04555
BFF78_RS04555	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS04560	SM00822	BFF78_RS04560
BFF78_RS04560	SM00823	Phosphopantetheine attachment site
BFF78_RS04560	SM00825	Beta-ketoacyl synthase
BFF78_RS04560	SM00826	BFF78_RS04560
BFF78_RS04560	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS04560	SM01294	BFF78_RS04560
BFF78_RS04585	SM00824	Thioesterase
BFF78_RS04590	SM00823	Phosphopantetheine attachment site
BFF78_RS04640	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS04665	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS04735	SM00919	Malic enzyme, NAD binding domain
BFF78_RS04735	SM01274	BFF78_RS04735
BFF78_RS04800	SM00563	Phosphate acyltransferases
BFF78_RS04830	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS04835	SM00052	Putative diguanylate phosphodiesterase
BFF78_RS04835	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFF78_RS04835	SM00091	PAS domain
BFF78_RS04835	SM00267	diguanylate cyclase
BFF78_RS04905	SM00854	Bacterial capsule synthesis protein PGA_cap
BFF78_RS04925	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BFF78_RS04925	SM01232	BFF78_RS04925
BFF78_RS04930	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS04930	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFF78_RS04930	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS04965	SM00822	BFF78_RS04965
BFF78_RS04970	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFF78_RS04980	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS04990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS04990	SM00895	BFF78_RS04990
BFF78_RS04995	SM00872	Alpha mannosidase, middle domain
BFF78_RS05025	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS05030	SM00812	Alpha-L-fucosidase
BFF78_RS05095	SM01350	BFF78_RS05095
BFF78_RS05105	SM00458	Ricin-type beta-trefoil
BFF78_RS05120	SM00458	Ricin-type beta-trefoil
BFF78_RS05125	SM00458	Ricin-type beta-trefoil
BFF78_RS05130	SM00458	Ricin-type beta-trefoil
BFF78_RS05175	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS05240	SM00458	Ricin-type beta-trefoil
BFF78_RS05245	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
BFF78_RS05245	SM00458	Ricin-type beta-trefoil
BFF78_RS05245	SM00606	Cellulose Binding Domain Type IV
BFF78_RS05260	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05285	SM00458	Ricin-type beta-trefoil
BFF78_RS05355	SM00100	Cyclic nucleotide-monophosphate binding domain
BFF78_RS05365	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05365	SM01086	C-terminal, D2-small domain, of ClpB protein
BFF78_RS05375	SM00271	DnaJ molecular chaperone homology domain
BFF78_RS05420	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS05420	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS05435	SM00829	Enoylreductase
BFF78_RS05480	SM00822	BFF78_RS05480
BFF78_RS05505	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS05515	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS05530	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS05530	SM00091	PAS domain
BFF78_RS05530	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS05535	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS05535	SM00895	BFF78_RS05535
BFF78_RS05560	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05565	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05595	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS05655	SM00320	WD40 repeats
BFF78_RS05680	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05685	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05720	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS05745	SM00448	cheY-homologous receiver domain
BFF78_RS05745	SM00850	LytTr DNA-binding domain
BFF78_RS05760	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BFF78_RS05770	SM00458	Ricin-type beta-trefoil
BFF78_RS05775	SM00458	Ricin-type beta-trefoil
BFF78_RS05785	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05865	SM00028	Tetratricopeptide repeats
BFF78_RS05870	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS05875	SM00235	Zinc-dependent metalloprotease
BFF78_RS05915	SM01130	BFF78_RS05915
BFF78_RS05925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS05925	SM00895	BFF78_RS05925
BFF78_RS05940	SM00448	cheY-homologous receiver domain
BFF78_RS05945	SM00091	PAS domain
BFF78_RS05945	SM00387	Histidine kinase-like ATPases
BFF78_RS05950	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS05990	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS06005	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS06015	SM00822	BFF78_RS06015
BFF78_RS06035	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS06050	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS06050	SM00866	BFF78_RS06050
BFF78_RS06135	SM00387	Histidine kinase-like ATPases
BFF78_RS06145	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS06145	SM00448	cheY-homologous receiver domain
BFF78_RS06160	SM01230	BFF78_RS06160
BFF78_RS06180	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS06180	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS06200	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS06230	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS06245	SM00960	Roadblock/LC7 domain
BFF78_RS06275	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS06285	SM00422	helix_turn_helix, mercury resistance
BFF78_RS06325	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS06330	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS06340	SM00612	BFF78_RS06340
BFF78_RS06345	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS06360	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BFF78_RS06390	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS06400	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS06445	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS06515	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS06520	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS06520	SM00732	Likely ribonuclease with RNase H fold.
BFF78_RS06525	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS06540	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BFF78_RS06555	SM00506	Appr-1"-p processing enzyme
BFF78_RS06565	SM00422	helix_turn_helix, mercury resistance
BFF78_RS06630	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS06670	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS06700	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS06705	SM00882	Coenzyme A transferase
BFF78_RS06710	SM00882	Coenzyme A transferase
BFF78_RS06725	SM00998	Adenylosuccinate lyase C-terminus
BFF78_RS06740	SM00028	Tetratricopeptide repeats
BFF78_RS06780	SM00710	Parallel beta-helix repeats
BFF78_RS06785	SM00642	Alpha-amylase domain
BFF78_RS06805	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS06815	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS06845	SM00060	Fibronectin type 3 domain
BFF78_RS06850	SM00872	Alpha mannosidase, middle domain
BFF78_RS06875	SM00606	Cellulose Binding Domain Type IV
BFF78_RS06880	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS06885	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS06910	SM01350	BFF78_RS06910
BFF78_RS06915	SM00855	Phosphoglycerate mutase family
BFF78_RS06935	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS06935	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS07050	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS07090	SM00838	Elongation factor G C-terminus
BFF78_RS07090	SM00889	Elongation factor G, domain IV
BFF78_RS07110	SM00822	BFF78_RS07110
BFF78_RS07110	SM00823	Phosphopantetheine attachment site
BFF78_RS07110	SM00824	Thioesterase
BFF78_RS07110	SM00825	Beta-ketoacyl synthase
BFF78_RS07110	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07110	SM01294	BFF78_RS07110
BFF78_RS07115	SM00822	BFF78_RS07115
BFF78_RS07115	SM00823	Phosphopantetheine attachment site
BFF78_RS07115	SM00825	Beta-ketoacyl synthase
BFF78_RS07115	SM00826	BFF78_RS07115
BFF78_RS07115	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07115	SM00829	Enoylreductase
BFF78_RS07115	SM01294	BFF78_RS07115
BFF78_RS07120	SM00822	BFF78_RS07120
BFF78_RS07120	SM00823	Phosphopantetheine attachment site
BFF78_RS07120	SM00825	Beta-ketoacyl synthase
BFF78_RS07120	SM00826	BFF78_RS07120
BFF78_RS07120	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07120	SM01294	BFF78_RS07120
BFF78_RS07125	SM00822	BFF78_RS07125
BFF78_RS07125	SM00823	Phosphopantetheine attachment site
BFF78_RS07125	SM00825	Beta-ketoacyl synthase
BFF78_RS07125	SM00826	BFF78_RS07125
BFF78_RS07125	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07125	SM01294	BFF78_RS07125
BFF78_RS07140	SM00822	BFF78_RS07140
BFF78_RS07140	SM00823	Phosphopantetheine attachment site
BFF78_RS07140	SM00825	Beta-ketoacyl synthase
BFF78_RS07140	SM00826	BFF78_RS07140
BFF78_RS07140	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07140	SM01294	BFF78_RS07140
BFF78_RS07155	SM00822	BFF78_RS07155
BFF78_RS07155	SM00823	Phosphopantetheine attachment site
BFF78_RS07155	SM00824	Thioesterase
BFF78_RS07155	SM00825	Beta-ketoacyl synthase
BFF78_RS07155	SM00826	BFF78_RS07155
BFF78_RS07155	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07155	SM01294	BFF78_RS07155
BFF78_RS07160	SM00822	BFF78_RS07160
BFF78_RS07160	SM00823	Phosphopantetheine attachment site
BFF78_RS07160	SM00825	Beta-ketoacyl synthase
BFF78_RS07160	SM00826	BFF78_RS07160
BFF78_RS07160	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07160	SM00829	Enoylreductase
BFF78_RS07160	SM01294	BFF78_RS07160
BFF78_RS07165	SM00822	BFF78_RS07165
BFF78_RS07165	SM00823	Phosphopantetheine attachment site
BFF78_RS07165	SM00825	Beta-ketoacyl synthase
BFF78_RS07165	SM00826	BFF78_RS07165
BFF78_RS07165	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07165	SM01294	BFF78_RS07165
BFF78_RS07170	SM00822	BFF78_RS07170
BFF78_RS07170	SM00823	Phosphopantetheine attachment site
BFF78_RS07170	SM00825	Beta-ketoacyl synthase
BFF78_RS07170	SM00826	BFF78_RS07170
BFF78_RS07170	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07170	SM01294	BFF78_RS07170
BFF78_RS07175	SM00822	BFF78_RS07175
BFF78_RS07175	SM00823	Phosphopantetheine attachment site
BFF78_RS07175	SM00825	Beta-ketoacyl synthase
BFF78_RS07175	SM00826	BFF78_RS07175
BFF78_RS07175	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS07175	SM00829	Enoylreductase
BFF78_RS07175	SM01294	BFF78_RS07175
BFF78_RS07225	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS07255	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS07255	SM00091	PAS domain
BFF78_RS07255	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS07265	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS07270	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS07310	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS07315	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS07335	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BFF78_RS07335	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BFF78_RS07340	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS07405	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS07470	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS07470	SM00448	cheY-homologous receiver domain
BFF78_RS07545	SM00448	cheY-homologous receiver domain
BFF78_RS07545	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS07550	SM00387	Histidine kinase-like ATPases
BFF78_RS07550	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS07560	SM00448	cheY-homologous receiver domain
BFF78_RS07560	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS07570	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS07575	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS07585	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS07585	SM00387	Histidine kinase-like ATPases
BFF78_RS07585	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS07620	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BFF78_RS07620	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BFF78_RS07630	SM00357	Cold shock protein domain
BFF78_RS07655	SM00823	Phosphopantetheine attachment site
BFF78_RS07670	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS07735	SM00831	Cation transporter/ATPase, N-terminus
BFF78_RS07740	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS07815	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS07820	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS07825	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS07835	SM00387	Histidine kinase-like ATPases
BFF78_RS07850	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS07855	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS07870	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS07995	SM00984	UDP binding domain
BFF78_RS08030	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS08040	SM01260	BFF78_RS08040
BFF78_RS08075	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS08215	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS08230	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS08250	SM00257	Lysin motif
BFF78_RS08250	SM01043	Bacterial transcriptional activator domain
BFF78_RS08295	SM00858	BFF78_RS08295
BFF78_RS08320	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS08350	SM00822	BFF78_RS08350
BFF78_RS08360	SM01133	BFF78_RS08360
BFF78_RS08390	SM00487	DEAD-like helicases superfamily
BFF78_RS08390	SM00490	helicase superfamily c-terminal domain
BFF78_RS08440	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS08455	SM00487	DEAD-like helicases superfamily
BFF78_RS08455	SM00490	helicase superfamily c-terminal domain
BFF78_RS08460	SM00487	DEAD-like helicases superfamily
BFF78_RS08460	SM00490	helicase superfamily c-terminal domain
BFF78_RS08465	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS08475	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS08565	SM00028	Tetratricopeptide repeats
BFF78_RS08595	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS08595	SM00895	BFF78_RS08595
BFF78_RS08625	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS08630	SM00829	Enoylreductase
BFF78_RS08635	SM00282	Laminin G domain
BFF78_RS08635	SM00560	LamG-like jellyroll fold domain
BFF78_RS08655	SM00060	Fibronectin type 3 domain
BFF78_RS08655	SM00606	Cellulose Binding Domain Type IV
BFF78_RS08660	SM00812	Alpha-L-fucosidase
BFF78_RS08675	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS08740	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS08745	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS08795	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS08840	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS08850	SM00855	Phosphoglycerate mutase family
BFF78_RS08855	SM00014	Acid phosphatase homologues
BFF78_RS08855	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BFF78_RS08925	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS08960	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BFF78_RS09010	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS09010	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS09045	SM00567	E-Z type HEAT repeats
BFF78_RS09060	SM00829	Enoylreductase
BFF78_RS09130	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS09130	SM00478	endonuclease III
BFF78_RS09130	SM01009	AlkA N-terminal domain
BFF78_RS09145	SM00240	Forkhead associated domain
BFF78_RS09160	SM00873	B3/4 domain
BFF78_RS09175	SM00506	Appr-1"-p processing enzyme
BFF78_RS09250	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS09260	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS09260	SM01086	C-terminal, D2-small domain, of ClpB protein
BFF78_RS09275	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BFF78_RS09295	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS09310	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS09355	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS09370	SM00244	prohibitin homologues
BFF78_RS09375	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS09405	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS09405	SM00091	PAS domain
BFF78_RS09405	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS09455	SM00829	Enoylreductase
BFF78_RS09500	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS09625	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS09625	SM00091	PAS domain
BFF78_RS09625	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS09635	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS09635	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS09655	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS09655	SM01043	Bacterial transcriptional activator domain
BFF78_RS09665	SM00028	Tetratricopeptide repeats
BFF78_RS09665	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS09665	SM01043	Bacterial transcriptional activator domain
BFF78_RS09725	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS09730	SM00823	Phosphopantetheine attachment site
BFF78_RS09730	SM00824	Thioesterase
BFF78_RS09735	SM00823	Phosphopantetheine attachment site
BFF78_RS09740	SM00823	Phosphopantetheine attachment site
BFF78_RS09745	SM00823	Phosphopantetheine attachment site
BFF78_RS09750	SM00823	Phosphopantetheine attachment site
BFF78_RS09750	SM00824	Thioesterase
BFF78_RS09755	SM00923	MbtH-like protein
BFF78_RS09765	SM00822	BFF78_RS09765
BFF78_RS09780	SM01294	BFF78_RS09780
BFF78_RS09820	SM00825	Beta-ketoacyl synthase
BFF78_RS09825	SM00825	Beta-ketoacyl synthase
BFF78_RS09835	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS09845	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS09850	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS09855	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS09860	SM00823	Phosphopantetheine attachment site
BFF78_RS09860	SM00824	Thioesterase
BFF78_RS09890	SM00487	DEAD-like helicases superfamily
BFF78_RS09890	SM00490	helicase superfamily c-terminal domain
BFF78_RS09905	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS09920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS09920	SM00866	BFF78_RS09920
BFF78_RS09935	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS09935	SM00448	cheY-homologous receiver domain
BFF78_RS10005	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS10030	SM00387	Histidine kinase-like ATPases
BFF78_RS10050	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS10080	SM00855	Phosphoglycerate mutase family
BFF78_RS10145	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS10210	SM01060	BFF78_RS10210
BFF78_RS10245	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS10250	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS10250	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS10255	SM00020	Trypsin-like serine protease
BFF78_RS10300	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BFF78_RS10310	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BFF78_RS10330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS10330	SM00895	BFF78_RS10330
BFF78_RS10390	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS10390	SM01009	AlkA N-terminal domain
BFF78_RS10400	SM00357	Cold shock protein domain
BFF78_RS10405	SM00487	DEAD-like helicases superfamily
BFF78_RS10405	SM00490	helicase superfamily c-terminal domain
BFF78_RS10410	SM00637	BFF78_RS10410
BFF78_RS10435	SM01038	Beta galactosidase small chain
BFF78_RS10485	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS10495	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS10560	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS10620	SM00479	BFF78_RS10620
BFF78_RS10640	SM00642	Alpha-amylase domain
BFF78_RS10645	SM00642	Alpha-amylase domain
BFF78_RS10660	SM00631	BFF78_RS10660
BFF78_RS10670	SM00240	Forkhead associated domain
BFF78_RS10675	SM00642	Alpha-amylase domain
BFF78_RS10695	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFF78_RS10770	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS10780	SM00344	helix_turn_helix ASNC type
BFF78_RS10815	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS10825	SM00900	BFF78_RS10825
BFF78_RS10870	SM00947	Carbonic anhydrase
BFF78_RS10880	SM00244	prohibitin homologues
BFF78_RS10910	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS10990	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS10990	SM00448	cheY-homologous receiver domain
BFF78_RS10995	SM00341	Helicase and RNase D C-terminal
BFF78_RS10995	SM00474	3'-5' exonuclease
BFF78_RS11045	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS11055	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS11095	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS11095	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS11110	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS11115	SM00829	Enoylreductase
BFF78_RS11150	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS11165	SM00824	Thioesterase
BFF78_RS11195	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS11240	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS11240	SM01043	Bacterial transcriptional activator domain
BFF78_RS11250	SM00823	Phosphopantetheine attachment site
BFF78_RS11250	SM00825	Beta-ketoacyl synthase
BFF78_RS11250	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS11255	SM00822	BFF78_RS11255
BFF78_RS11255	SM00823	Phosphopantetheine attachment site
BFF78_RS11255	SM00825	Beta-ketoacyl synthase
BFF78_RS11255	SM00826	BFF78_RS11255
BFF78_RS11255	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS11255	SM00829	Enoylreductase
BFF78_RS11255	SM01294	BFF78_RS11255
BFF78_RS11260	SM00822	BFF78_RS11260
BFF78_RS11260	SM00823	Phosphopantetheine attachment site
BFF78_RS11260	SM00825	Beta-ketoacyl synthase
BFF78_RS11260	SM00826	BFF78_RS11260
BFF78_RS11260	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS11260	SM01294	BFF78_RS11260
BFF78_RS11265	SM00823	Phosphopantetheine attachment site
BFF78_RS11265	SM00825	Beta-ketoacyl synthase
BFF78_RS11265	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS11280	SM00823	Phosphopantetheine attachment site
BFF78_RS11300	SM00824	Thioesterase
BFF78_RS11305	SM00823	Phosphopantetheine attachment site
BFF78_RS11310	SM00823	Phosphopantetheine attachment site
BFF78_RS11315	SM00823	Phosphopantetheine attachment site
BFF78_RS11335	SM00923	MbtH-like protein
BFF78_RS11370	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS11385	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS11435	SM00823	Phosphopantetheine attachment site
BFF78_RS11435	SM00825	Beta-ketoacyl synthase
BFF78_RS11435	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS11490	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS11490	SM00866	BFF78_RS11490
BFF78_RS11565	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS11620	SM00867	YceI-like domain 
BFF78_RS11625	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS11660	SM00458	Ricin-type beta-trefoil
BFF78_RS11670	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS11745	SM00829	Enoylreductase
BFF78_RS11820	SM00448	cheY-homologous receiver domain
BFF78_RS11820	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS11825	SM00387	Histidine kinase-like ATPases
BFF78_RS11825	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS11865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS11865	SM00387	Histidine kinase-like ATPases
BFF78_RS11865	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS11870	SM00448	cheY-homologous receiver domain
BFF78_RS11870	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS11905	SM00450	Rhodanese Homology Domain
BFF78_RS11930	SM00881	CoA binding domain
BFF78_RS11940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS11940	SM00895	BFF78_RS11940
BFF78_RS11960	SM00434	DNA Topoisomerase IV
BFF78_RS11965	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BFF78_RS12000	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS12000	SM00448	cheY-homologous receiver domain
BFF78_RS12015	SM00387	Histidine kinase-like ATPases
BFF78_RS12015	SM00433	TopoisomeraseII
BFF78_RS12035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS12035	SM00895	BFF78_RS12035
BFF78_RS12040	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS12060	SM00487	DEAD-like helicases superfamily
BFF78_RS12060	SM00490	helicase superfamily c-terminal domain
BFF78_RS12095	SM00855	Phosphoglycerate mutase family
BFF78_RS12125	SM00487	DEAD-like helicases superfamily
BFF78_RS12125	SM00491	BFF78_RS12125
BFF78_RS12130	SM01006	Siderophore biosynthesis protein domain
BFF78_RS12195	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS12280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS12300	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS12300	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BFF78_RS12305	SM00822	BFF78_RS12305
BFF78_RS12320	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS12340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS12340	SM00387	Histidine kinase-like ATPases
BFF78_RS12340	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS12345	SM00448	cheY-homologous receiver domain
BFF78_RS12345	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS12350	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS12355	SM00062	Bacterial periplasmic substrate-binding proteins
BFF78_RS12380	SM00450	Rhodanese Homology Domain
BFF78_RS12390	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS12420	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS12425	SM00487	DEAD-like helicases superfamily
BFF78_RS12425	SM00490	helicase superfamily c-terminal domain
BFF78_RS12430	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BFF78_RS12430	SM01232	BFF78_RS12430
BFF78_RS12440	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS12455	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS12470	SM00448	cheY-homologous receiver domain
BFF78_RS12475	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS12475	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS12475	SM00387	Histidine kinase-like ATPases
BFF78_RS12475	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS12475	SM00448	cheY-homologous receiver domain
BFF78_RS12480	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS12480	SM00091	PAS domain
BFF78_RS12480	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS12515	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS12520	SM01130	BFF78_RS12520
BFF78_RS12540	SM00822	BFF78_RS12540
BFF78_RS12560	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS12560	SM00322	K homology RNA-binding domain
BFF78_RS12565	SM01387	BFF78_RS12565
BFF78_RS12575	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS12575	SM00564	beta-propeller repeat
BFF78_RS12600	SM00904	Riboflavin kinase
BFF78_RS12635	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS12735	SM00060	Fibronectin type 3 domain
BFF78_RS12735	SM00636	BFF78_RS12735
BFF78_RS12765	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS12810	SM00255	Toll - interleukin 1 - resistance
BFF78_RS12810	SM00320	WD40 repeats
BFF78_RS12830	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS12865	SM00344	helix_turn_helix ASNC type
BFF78_RS12875	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS12905	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS12930	SM00867	YceI-like domain 
BFF78_RS12980	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13060	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13065	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13065	SM00962	SRP54-type protein, GTPase domain
BFF78_RS13065	SM00963	SRP54-type protein, helical bundle domain
BFF78_RS13070	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFF78_RS13075	SM00938	Nitrogen regulatory protein P-II
BFF78_RS13090	SM00943	Bifunctional DNA primase/polymerase, N-terminal
BFF78_RS13095	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13095	SM00962	SRP54-type protein, GTPase domain
BFF78_RS13095	SM00963	SRP54-type protein, helical bundle domain
BFF78_RS13120	SM00968	SMC proteins Flexible Hinge Domain
BFF78_RS13150	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BFF78_RS13150	SM01232	BFF78_RS13150
BFF78_RS13155	SM00358	Double-stranded RNA binding motif
BFF78_RS13155	SM00535	Ribonuclease III family
BFF78_RS13185	SM00487	DEAD-like helicases superfamily
BFF78_RS13185	SM00490	helicase superfamily c-terminal domain
BFF78_RS13205	SM01120	BFF78_RS13205
BFF78_RS13205	SM01121	BFF78_RS13205
BFF78_RS13245	SM00563	Phosphate acyltransferases
BFF78_RS13260	SM00411	bacterial (prokaryotic) histone like domain
BFF78_RS13280	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS13290	SM00422	helix_turn_helix, mercury resistance
BFF78_RS13345	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS13345	SM00387	Histidine kinase-like ATPases
BFF78_RS13350	SM00960	Roadblock/LC7 domain
BFF78_RS13365	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS13365	SM00387	Histidine kinase-like ATPases
BFF78_RS13370	SM00960	Roadblock/LC7 domain
BFF78_RS13395	SM00867	YceI-like domain 
BFF78_RS13415	SM00237	Domains in Na-Ca exchangers and integrin-beta4
BFF78_RS13420	SM00458	Ricin-type beta-trefoil
BFF78_RS13435	SM00917	LeuA allosteric (dimerisation) domain
BFF78_RS13480	SM01329	BFF78_RS13480
BFF78_RS13535	SM00052	Putative diguanylate phosphodiesterase
BFF78_RS13535	SM00091	PAS domain
BFF78_RS13535	SM00267	diguanylate cyclase
BFF78_RS13555	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13555	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS13580	SM00845	GatB domain
BFF78_RS13615	SM00052	Putative diguanylate phosphodiesterase
BFF78_RS13615	SM00267	diguanylate cyclase
BFF78_RS13620	SM00292	breast cancer carboxy-terminal domain
BFF78_RS13620	SM00532	Ligase N family
BFF78_RS13630	SM00822	BFF78_RS13630
BFF78_RS13655	SM00644	BFF78_RS13655
BFF78_RS13695	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13700	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13760	SM00422	helix_turn_helix, mercury resistance
BFF78_RS13770	SM00641	Glycosyl hydrolases family 25
BFF78_RS13780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS13780	SM00895	BFF78_RS13780
BFF78_RS13785	SM00917	LeuA allosteric (dimerisation) domain
BFF78_RS13790	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13795	SM00054	EF-hand, calcium binding motif
BFF78_RS13800	SM00564	beta-propeller repeat
BFF78_RS13830	SM00642	Alpha-amylase domain
BFF78_RS13860	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13875	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13885	SM00387	Histidine kinase-like ATPases
BFF78_RS13890	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS13890	SM00448	cheY-homologous receiver domain
BFF78_RS13900	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS13940	SM00642	Alpha-amylase domain
BFF78_RS13945	SM00642	Alpha-amylase domain
BFF78_RS13955	SM00642	Alpha-amylase domain
BFF78_RS13990	SM00387	Histidine kinase-like ATPases
BFF78_RS13995	SM00448	cheY-homologous receiver domain
BFF78_RS14075	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS14110	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS14145	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14155	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14205	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14230	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS14230	SM00448	cheY-homologous receiver domain
BFF78_RS14235	SM00060	Fibronectin type 3 domain
BFF78_RS14235	SM00636	BFF78_RS14235
BFF78_RS14235	SM00637	BFF78_RS14235
BFF78_RS14250	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14300	SM00226	Low molecular weight phosphatase family
BFF78_RS14315	SM00937	BFF78_RS14315
BFF78_RS14330	SM00357	Cold shock protein domain
BFF78_RS14330	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14330	SM00959	Rho termination factor, N-terminal domain
BFF78_RS14355	SM00836	DALR anticodon binding domain
BFF78_RS14355	SM01016	Arginyl tRNA synthetase N terminal dom
BFF78_RS14360	SM00448	cheY-homologous receiver domain
BFF78_RS14390	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
BFF78_RS14415	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS14415	SM00387	Histidine kinase-like ATPases
BFF78_RS14415	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS14485	SM00960	Roadblock/LC7 domain
BFF78_RS14490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS14500	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS14505	SM00641	Glycosyl hydrolases family 25
BFF78_RS14510	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS14515	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS14515	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS14530	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS14535	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14535	SM00464	Found in ATP-dependent protease La (LON)
BFF78_RS14550	SM00448	cheY-homologous receiver domain
BFF78_RS14550	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS14555	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS14555	SM00387	Histidine kinase-like ATPases
BFF78_RS14555	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS14560	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS14590	SM00829	Enoylreductase
BFF78_RS14595	SM00919	Malic enzyme, NAD binding domain
BFF78_RS14595	SM01274	BFF78_RS14595
BFF78_RS14625	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14635	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS14635	SM00448	cheY-homologous receiver domain
BFF78_RS14640	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS14640	SM00448	cheY-homologous receiver domain
BFF78_RS14650	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS14670	SM00054	EF-hand, calcium binding motif
BFF78_RS14675	SM00642	Alpha-amylase domain
BFF78_RS14695	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS14710	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS14740	SM00100	Cyclic nucleotide-monophosphate binding domain
BFF78_RS14775	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BFF78_RS14785	SM00387	Histidine kinase-like ATPases
BFF78_RS14800	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS14800	SM00866	BFF78_RS14800
BFF78_RS14855	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFF78_RS14915	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS14920	SM01060	BFF78_RS14920
BFF78_RS14935	SM00028	Tetratricopeptide repeats
BFF78_RS14935	SM00671	Sel1-like repeats.
BFF78_RS14955	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFF78_RS15030	SM00341	Helicase and RNase D C-terminal
BFF78_RS15080	SM00450	Rhodanese Homology Domain
BFF78_RS15105	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15160	SM00487	DEAD-like helicases superfamily
BFF78_RS15160	SM00490	helicase superfamily c-terminal domain
BFF78_RS15180	SM00481	DNA polymerase alpha chain like domain
BFF78_RS15210	SM00924	MgtE intracellular N domain
BFF78_RS15235	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFF78_RS15325	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS15325	SM00448	cheY-homologous receiver domain
BFF78_RS15340	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15380	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS15395	SM00487	DEAD-like helicases superfamily
BFF78_RS15410	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15415	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15450	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15455	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15475	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS15490	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15495	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS15570	SM00866	BFF78_RS15570
BFF78_RS15575	SM00093	SERine  Proteinase INhibitors
BFF78_RS15580	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS15590	SM01329	BFF78_RS15590
BFF78_RS15605	SM00823	Phosphopantetheine attachment site
BFF78_RS15615	SM00903	Flavin reductase like domain
BFF78_RS15625	SM00923	MbtH-like protein
BFF78_RS15655	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS15665	SM00824	Thioesterase
BFF78_RS15670	SM00823	Phosphopantetheine attachment site
BFF78_RS15715	SM00823	Phosphopantetheine attachment site
BFF78_RS15725	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS15740	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS15765	SM00824	Thioesterase
BFF78_RS15775	SM00823	Phosphopantetheine attachment site
BFF78_RS15780	SM00823	Phosphopantetheine attachment site
BFF78_RS15780	SM00825	Beta-ketoacyl synthase
BFF78_RS15780	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS15795	SM01209	BFF78_RS15795
BFF78_RS15880	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS15890	SM00244	prohibitin homologues
BFF78_RS15905	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS15920	SM00960	Roadblock/LC7 domain
BFF78_RS15955	SM00670	Large family of predicted nucleotide-binding domains
BFF78_RS16015	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS16015	SM00448	cheY-homologous receiver domain
BFF78_RS16020	SM00387	Histidine kinase-like ATPases
BFF78_RS16055	SM00858	BFF78_RS16055
BFF78_RS16065	SM00060	Fibronectin type 3 domain
BFF78_RS16065	SM00636	BFF78_RS16065
BFF78_RS16090	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS16100	SM01119	BFF78_RS16100
BFF78_RS16135	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS16195	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS16210	SM00028	Tetratricopeptide repeats
BFF78_RS16210	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS16255	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS16265	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS16320	SM01043	Bacterial transcriptional activator domain
BFF78_RS16330	SM00829	Enoylreductase
BFF78_RS16335	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS16375	SM00267	diguanylate cyclase
BFF78_RS16390	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
BFF78_RS16420	SM00878	Biotin carboxylase C-terminal domain
BFF78_RS16425	SM00420	helix_turn_helix, Deoxyribose operon repressor
BFF78_RS16425	SM01134	BFF78_RS16425
BFF78_RS16455	SM01133	BFF78_RS16455
BFF78_RS16485	SM00448	cheY-homologous receiver domain
BFF78_RS16485	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS16490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS16490	SM00387	Histidine kinase-like ATPases
BFF78_RS16490	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS16545	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BFF78_RS16795	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS16825	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS16840	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS16860	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS16865	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS16865	SM00448	cheY-homologous receiver domain
BFF78_RS16870	SM00387	Histidine kinase-like ATPases
BFF78_RS16895	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS16920	SM00798	AICARFT/IMPCHase bienzyme
BFF78_RS16920	SM00851	MGS-like domain
BFF78_RS16940	SM00108	Bulb-type mannose-specific lectin
BFF78_RS16955	SM00881	CoA binding domain
BFF78_RS16975	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS17040	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS17040	SM00448	cheY-homologous receiver domain
BFF78_RS17080	SM01007	Class II Aldolase and Adducin N-terminal domain
BFF78_RS17095	SM00830	Chorismate mutase type II
BFF78_RS17110	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS17115	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS17120	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS17125	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS17130	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS17135	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS17145	SM00984	UDP binding domain
BFF78_RS17155	SM01240	BFF78_RS17155
BFF78_RS17160	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS17160	SM01240	BFF78_RS17160
BFF78_RS17170	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS17170	SM00448	cheY-homologous receiver domain
BFF78_RS17205	SM00883	Chaperonin 10 Kd subunit
BFF78_RS17295	SM01005	Alanine racemase, C-terminal domain
BFF78_RS17365	SM00662	RNA polymerases D
BFF78_RS17385	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS17445	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BFF78_RS17450	SM01374	BFF78_RS17450
BFF78_RS17470	SM00322	K homology RNA-binding domain
BFF78_RS17485	SM01382	BFF78_RS17485
BFF78_RS17485	SM01383	BFF78_RS17485
BFF78_RS17505	SM01403	BFF78_RS17505
BFF78_RS17520	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS17540	SM00838	Elongation factor G C-terminus
BFF78_RS17540	SM00889	Elongation factor G, domain IV
BFF78_RS17555	SM00663	RNA polymerase I subunit A N-terminus
BFF78_RS17585	SM00649	Ribosomal protein L11/L12
BFF78_RS17590	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BFF78_RS17590	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BFF78_RS17770	SM00943	Bifunctional DNA primase/polymerase, N-terminal
BFF78_RS17880	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS17880	SM00448	cheY-homologous receiver domain
BFF78_RS17930	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS17975	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS17975	SM00866	BFF78_RS17975
BFF78_RS17995	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS18000	SM00567	E-Z type HEAT repeats
BFF78_RS18005	SM00341	Helicase and RNase D C-terminal
BFF78_RS18005	SM00487	DEAD-like helicases superfamily
BFF78_RS18005	SM00490	helicase superfamily c-terminal domain
BFF78_RS18005	SM00956	BFF78_RS18005
BFF78_RS18045	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BFF78_RS18045	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BFF78_RS18050	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BFF78_RS18115	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS18125	SM01043	Bacterial transcriptional activator domain
BFF78_RS18210	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS18270	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS18280	SM00357	Cold shock protein domain
BFF78_RS18285	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS18315	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS18355	SM00986	Uracil DNA glycosylase superfamily
BFF78_RS18355	SM00987	UreE urease accessory protein, C-terminal domain 
BFF78_RS18365	SM00344	helix_turn_helix ASNC type
BFF78_RS18400	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS18405	SM00829	Enoylreductase
BFF78_RS18465	SM00855	Phosphoglycerate mutase family
BFF78_RS18525	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS18550	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS18560	SM00244	prohibitin homologues
BFF78_RS18615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS18615	SM00387	Histidine kinase-like ATPases
BFF78_RS18615	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS18620	SM00448	cheY-homologous receiver domain
BFF78_RS18620	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS18670	SM00836	DALR anticodon binding domain
BFF78_RS18670	SM01016	Arginyl tRNA synthetase N terminal dom
BFF78_RS18700	SM01004	Delta-aminolevulinic acid dehydratase
BFF78_RS18730	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS18755	SM00881	CoA binding domain
BFF78_RS18780	SM00563	Phosphate acyltransferases
BFF78_RS18855	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS18875	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS18875	SM00564	beta-propeller repeat
BFF78_RS18925	SM00478	endonuclease III
BFF78_RS18940	SM00448	cheY-homologous receiver domain
BFF78_RS18940	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS18945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS18945	SM00387	Histidine kinase-like ATPases
BFF78_RS18945	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS18955	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS18985	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS18985	SM01086	C-terminal, D2-small domain, of ClpB protein
BFF78_RS19055	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS19060	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS19060	SM00448	cheY-homologous receiver domain
BFF78_RS19115	SM00905	Dihydroneopterin aldolase
BFF78_RS19135	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS19180	SM00422	helix_turn_helix, mercury resistance
BFF78_RS19200	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS19220	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS19240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS19270	SM00482	DNA polymerase A domain
BFF78_RS19275	SM00028	Tetratricopeptide repeats
BFF78_RS19275	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS19275	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS19275	SM01043	Bacterial transcriptional activator domain
BFF78_RS19305	SM00823	Phosphopantetheine attachment site
BFF78_RS19305	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS19315	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS19315	SM00448	cheY-homologous receiver domain
BFF78_RS19335	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS19335	SM01043	Bacterial transcriptional activator domain
BFF78_RS19345	SM00823	Phosphopantetheine attachment site
BFF78_RS19350	SM00825	Beta-ketoacyl synthase
BFF78_RS19370	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS19380	SM00478	endonuclease III
BFF78_RS19385	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS19400	SM00822	BFF78_RS19400
BFF78_RS19430	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BFF78_RS19430	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BFF78_RS19430	SM00493	BFF78_RS19430
BFF78_RS19465	SM00487	DEAD-like helicases superfamily
BFF78_RS19465	SM00490	helicase superfamily c-terminal domain
BFF78_RS19520	SM00947	Carbonic anhydrase
BFF78_RS19555	SM00478	endonuclease III
BFF78_RS19555	SM00525	BFF78_RS19555
BFF78_RS19560	SM00100	Cyclic nucleotide-monophosphate binding domain
BFF78_RS19560	SM00419	helix_turn_helix, cAMP Regulatory protein
BFF78_RS19580	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS19635	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS19675	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS19710	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS19725	SM01012	BFF78_RS19725
BFF78_RS19800	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS19800	SM00387	Histidine kinase-like ATPases
BFF78_RS19800	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS19825	SM00387	Histidine kinase-like ATPases
BFF78_RS19825	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS19830	SM00448	cheY-homologous receiver domain
BFF78_RS19830	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS19860	SM00387	Histidine kinase-like ATPases
BFF78_RS19860	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS19915	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BFF78_RS19935	SM00493	BFF78_RS19935
BFF78_RS19950	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS19960	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS19990	SM00788	Adenylosuccinate synthetase
BFF78_RS20010	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS20010	SM00448	cheY-homologous receiver domain
BFF78_RS20020	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS20020	SM00448	cheY-homologous receiver domain
BFF78_RS20115	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS20115	SM01086	C-terminal, D2-small domain, of ClpB protein
BFF78_RS20130	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS20135	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS20140	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS20145	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS20255	SM00422	helix_turn_helix, mercury resistance
BFF78_RS20260	SM00271	DnaJ molecular chaperone homology domain
BFF78_RS20295	SM00857	Resolvase, N terminal domain
BFF78_RS20305	SM00857	Resolvase, N terminal domain
BFF78_RS20315	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS20375	SM00458	Ricin-type beta-trefoil
BFF78_RS20380	SM00458	Ricin-type beta-trefoil
BFF78_RS20380	SM00633	Glycosyl hydrolase family 10
BFF78_RS20470	SM00831	Cation transporter/ATPase, N-terminus
BFF78_RS20475	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS20505	SM00422	helix_turn_helix, mercury resistance
BFF78_RS20510	SM00357	Cold shock protein domain
BFF78_RS20515	SM00487	DEAD-like helicases superfamily
BFF78_RS20515	SM00490	helicase superfamily c-terminal domain
BFF78_RS20535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS20600	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS20600	SM00448	cheY-homologous receiver domain
BFF78_RS20615	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS20630	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS20635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS20635	SM00866	BFF78_RS20635
BFF78_RS20730	SM00028	Tetratricopeptide repeats
BFF78_RS20730	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS20750	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS20775	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS20795	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS20840	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS20865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS20865	SM00895	BFF78_RS20865
BFF78_RS20885	SM01040	BRO family, N-terminal domain
BFF78_RS20895	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS20910	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS20915	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS20915	SM00740	BFF78_RS20915
BFF78_RS20930	SM00829	Enoylreductase
BFF78_RS20935	SM00852	Probable molybdopterin binding domain
BFF78_RS20950	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS20960	SM00344	helix_turn_helix ASNC type
BFF78_RS20985	SM00752	Horizontally Transferred TransMembrane Domain
BFF78_RS21025	SM00450	Rhodanese Homology Domain
BFF78_RS21040	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BFF78_RS21040	SM01232	BFF78_RS21040
BFF78_RS21050	SM00240	Forkhead associated domain
BFF78_RS21055	SM00240	Forkhead associated domain
BFF78_RS21060	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS21060	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BFF78_RS21140	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS21175	SM00320	WD40 repeats
BFF78_RS21180	SM00829	Enoylreductase
BFF78_RS21200	SM00434	DNA Topoisomerase IV
BFF78_RS21205	SM00387	Histidine kinase-like ATPases
BFF78_RS21205	SM00433	TopoisomeraseII
BFF78_RS21220	SM01350	BFF78_RS21220
BFF78_RS21225	SM00480	DNA polymerase III beta subunit
BFF78_RS21230	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS21230	SM00760	Bacterial dnaA protein helix-turn-helix domain
BFF78_RS21240	SM01234	BFF78_RS21240
BFF78_RS21250	SM00393	Putative single-stranded nucleic acids-binding domain
BFF78_RS21265	SM00470	ParB-like nuclease domain
BFF78_RS21310	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFF78_RS21380	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS21395	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS21440	SM00226	Low molecular weight phosphatase family
BFF78_RS21495	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS21520	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS21540	SM00422	helix_turn_helix, mercury resistance
BFF78_RS21545	SM00822	BFF78_RS21545
BFF78_RS21555	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS21565	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS21635	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS21640	SM01011	Aminopeptidase P, N-terminal domain
BFF78_RS21645	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS21650	SM00943	Bifunctional DNA primase/polymerase, N-terminal
BFF78_RS21675	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFF78_RS21695	SM00752	Horizontally Transferred TransMembrane Domain
BFF78_RS21735	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS21740	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS21770	SM00942	Primase C terminal 1 (PriCT-1)
BFF78_RS21770	SM00943	Bifunctional DNA primase/polymerase, N-terminal
BFF78_RS21810	SM00091	PAS domain
BFF78_RS21810	SM00448	cheY-homologous receiver domain
BFF78_RS21875	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS21895	SM00448	cheY-homologous receiver domain
BFF78_RS21895	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS21900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS21900	SM00387	Histidine kinase-like ATPases
BFF78_RS21900	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS21930	SM00867	YceI-like domain 
BFF78_RS21940	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS21965	SM00886	Stress responsive A/B Barrel Domain
BFF78_RS22040	SM01006	Siderophore biosynthesis protein domain
BFF78_RS22050	SM00822	BFF78_RS22050
BFF78_RS22120	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS22145	SM00320	WD40 repeats
BFF78_RS22180	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS22240	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS22245	SM01209	BFF78_RS22245
BFF78_RS22245	SM01210	BFF78_RS22245
BFF78_RS22270	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS22270	SM00448	cheY-homologous receiver domain
BFF78_RS22285	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS22310	SM01211	BFF78_RS22310
BFF78_RS22345	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BFF78_RS22370	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS22370	SM00487	DEAD-like helicases superfamily
BFF78_RS22370	SM00490	helicase superfamily c-terminal domain
BFF78_RS22370	SM00847	Helicase associated domain (HA2)  Add an annotation
BFF78_RS22410	SM00487	DEAD-like helicases superfamily
BFF78_RS22410	SM00490	helicase superfamily c-terminal domain
BFF78_RS22440	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS22440	SM00448	cheY-homologous receiver domain
BFF78_RS22450	SM00873	B3/4 domain
BFF78_RS22475	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS22525	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS22525	SM01043	Bacterial transcriptional activator domain
BFF78_RS22535	SM00776	BFF78_RS22535
BFF78_RS22550	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS22560	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS22645	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS22655	SM00014	Acid phosphatase homologues
BFF78_RS22685	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS22730	SM00880	BFF78_RS22730
BFF78_RS22745	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS22750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS22765	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS22780	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS22780	SM00419	helix_turn_helix, cAMP Regulatory protein
BFF78_RS22785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS22785	SM00387	Histidine kinase-like ATPases
BFF78_RS22785	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS22790	SM00448	cheY-homologous receiver domain
BFF78_RS22790	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS22805	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS22810	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS22840	SM00450	Rhodanese Homology Domain
BFF78_RS22870	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS22930	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS22940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS22950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS22995	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS23015	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS23030	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS23030	SM00448	cheY-homologous receiver domain
BFF78_RS23060	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS23100	SM00855	Phosphoglycerate mutase family
BFF78_RS23150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS23150	SM00866	BFF78_RS23150
BFF78_RS23180	SM01012	BFF78_RS23180
BFF78_RS23185	SM01012	BFF78_RS23185
BFF78_RS23200	SM00387	Histidine kinase-like ATPases
BFF78_RS23200	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS23205	SM00448	cheY-homologous receiver domain
BFF78_RS23205	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS23215	SM01058	CarD-like/TRCF domain
BFF78_RS23235	SM00840	BFF78_RS23235
BFF78_RS23240	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BFF78_RS23260	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS23335	SM00903	Flavin reductase like domain
BFF78_RS23340	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS23340	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFF78_RS23340	SM00091	PAS domain
BFF78_RS23340	SM00267	diguanylate cyclase
BFF78_RS23400	SM00357	Cold shock protein domain
BFF78_RS23525	SM00487	DEAD-like helicases superfamily
BFF78_RS23525	SM00490	helicase superfamily c-terminal domain
BFF78_RS23550	SM00357	Cold shock protein domain
BFF78_RS23615	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS23655	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS23665	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS23715	SM00878	Biotin carboxylase C-terminal domain
BFF78_RS23760	SM00091	PAS domain
BFF78_RS23765	SM00529	Helix-turn-helix diphteria tox regulatory element
BFF78_RS23765	SM00899	BFF78_RS23765
BFF78_RS23780	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS23785	SM00943	Bifunctional DNA primase/polymerase, N-terminal
BFF78_RS23830	SM00054	EF-hand, calcium binding motif
BFF78_RS23870	SM00822	BFF78_RS23870
BFF78_RS23880	SM00829	Enoylreductase
BFF78_RS23885	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS23900	SM00903	Flavin reductase like domain
BFF78_RS23915	SM00881	CoA binding domain
BFF78_RS23970	SM00344	helix_turn_helix ASNC type
BFF78_RS23985	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS23985	SM00564	beta-propeller repeat
BFF78_RS24015	SM00028	Tetratricopeptide repeats
BFF78_RS24015	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS24015	SM01043	Bacterial transcriptional activator domain
BFF78_RS24070	SM00481	DNA polymerase alpha chain like domain
BFF78_RS24080	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS24095	SM00028	Tetratricopeptide repeats
BFF78_RS24150	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS24160	SM00422	helix_turn_helix, mercury resistance
BFF78_RS24170	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS24180	SM00244	prohibitin homologues
BFF78_RS24185	SM01260	BFF78_RS24185
BFF78_RS24190	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS24195	SM00226	Low molecular weight phosphatase family
BFF78_RS24205	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS24250	SM00752	Horizontally Transferred TransMembrane Domain
BFF78_RS24290	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS24315	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS24335	SM00422	helix_turn_helix, mercury resistance
BFF78_RS24355	SM00420	helix_turn_helix, Deoxyribose operon repressor
BFF78_RS24355	SM01134	BFF78_RS24355
BFF78_RS24435	SM00852	Probable molybdopterin binding domain
BFF78_RS24445	SM00852	Probable molybdopterin binding domain
BFF78_RS24475	SM00422	helix_turn_helix, mercury resistance
BFF78_RS24490	SM00822	BFF78_RS24490
BFF78_RS24500	SM00245	tail specific protease
BFF78_RS24545	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS24580	SM01208	BFF78_RS24580
BFF78_RS24585	SM00650	Ribosomal RNA adenine dimethylases
BFF78_RS24595	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS24610	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS24645	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS24645	SM00448	cheY-homologous receiver domain
BFF78_RS24650	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS24695	SM01400	BFF78_RS24695
BFF78_RS24730	SM00860	SMI1 / KNR4 family
BFF78_RS24780	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS24790	SM00487	DEAD-like helicases superfamily
BFF78_RS24790	SM00490	helicase superfamily c-terminal domain
BFF78_RS24790	SM00982	BFF78_RS24790
BFF78_RS24790	SM01058	CarD-like/TRCF domain
BFF78_RS24825	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS24845	SM00257	Lysin motif
BFF78_RS24850	SM00257	Lysin motif
BFF78_RS24855	SM01192	BFF78_RS24855
BFF78_RS24855	SM01193	BFF78_RS24855
BFF78_RS24885	SM00828	Methyltransferase  in polyketide synthase (PKS) enzymes.
BFF78_RS24895	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS24940	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS24975	SM00960	Roadblock/LC7 domain
BFF78_RS25015	SM00458	Ricin-type beta-trefoil
BFF78_RS25060	SM00448	cheY-homologous receiver domain
BFF78_RS25060	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS25065	SM00387	Histidine kinase-like ATPases
BFF78_RS25065	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS25080	SM01001	AIR carboxylase
BFF78_RS25095	SM00422	helix_turn_helix, mercury resistance
BFF78_RS25120	SM00984	UDP binding domain
BFF78_RS25215	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
BFF78_RS25220	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS25280	SM00644	BFF78_RS25280
BFF78_RS25280	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
BFF78_RS25360	SM00996	S-adenosyl-L-homocysteine hydrolase
BFF78_RS25360	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BFF78_RS25430	SM00448	cheY-homologous receiver domain
BFF78_RS25430	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS25435	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS25435	SM00387	Histidine kinase-like ATPases
BFF78_RS25435	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS25440	SM00909	Sporulation and spore germination
BFF78_RS25455	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS25455	SM00448	cheY-homologous receiver domain
BFF78_RS25470	SM00957	SecA DEAD-like domain
BFF78_RS25470	SM00958	SecA preprotein cross-linking domain
BFF78_RS25520	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS25550	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS25590	SM00240	Forkhead associated domain
BFF78_RS25590	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS25595	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS25600	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS25605	SM00937	BFF78_RS25605
BFF78_RS25620	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS25630	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFF78_RS25630	SM00245	tail specific protease
BFF78_RS25680	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS25720	SM00919	Malic enzyme, NAD binding domain
BFF78_RS25720	SM01274	BFF78_RS25720
BFF78_RS25725	SM00411	bacterial (prokaryotic) histone like domain
BFF78_RS25760	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BFF78_RS25795	SM00487	DEAD-like helicases superfamily
BFF78_RS25800	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS25825	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFF78_RS25845	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS25855	SM00344	helix_turn_helix ASNC type
BFF78_RS25865	SM00028	Tetratricopeptide repeats
BFF78_RS25935	SM00232	JAB/MPN domain
BFF78_RS25950	SM00736	Dystroglycan-type cadherin-like domains.
BFF78_RS25965	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS26005	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS26025	SM00883	Chaperonin 10 Kd subunit
BFF78_RS26070	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS26100	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS26110	SM00487	DEAD-like helicases superfamily
BFF78_RS26110	SM00490	helicase superfamily c-terminal domain
BFF78_RS26190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS26190	SM00866	BFF78_RS26190
BFF78_RS26205	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS26255	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS26255	SM00895	BFF78_RS26255
BFF78_RS26270	SM00244	prohibitin homologues
BFF78_RS26295	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS26310	SM00062	Bacterial periplasmic substrate-binding proteins
BFF78_RS26365	SM00052	Putative diguanylate phosphodiesterase
BFF78_RS26365	SM00091	PAS domain
BFF78_RS26365	SM00267	diguanylate cyclase
BFF78_RS26410	SM00855	Phosphoglycerate mutase family
BFF78_RS26435	SM00448	cheY-homologous receiver domain
BFF78_RS26435	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS26440	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS26440	SM00387	Histidine kinase-like ATPases
BFF78_RS26440	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS26475	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS26505	SM00479	BFF78_RS26505
BFF78_RS26510	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS26555	SM00257	Lysin motif
BFF78_RS26565	SM01006	Siderophore biosynthesis protein domain
BFF78_RS26605	SM00878	Biotin carboxylase C-terminal domain
BFF78_RS26665	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS26705	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS26740	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS26750	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS26775	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS26830	SM00829	Enoylreductase
BFF78_RS26880	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS26880	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BFF78_RS26975	SM00756	BFF78_RS26975
BFF78_RS27115	SM00822	BFF78_RS27115
BFF78_RS27120	SM00824	Thioesterase
BFF78_RS27125	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS27135	SM00823	Phosphopantetheine attachment site
BFF78_RS27135	SM00825	Beta-ketoacyl synthase
BFF78_RS27135	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS27140	SM00822	BFF78_RS27140
BFF78_RS27140	SM00823	Phosphopantetheine attachment site
BFF78_RS27140	SM00825	Beta-ketoacyl synthase
BFF78_RS27140	SM00826	BFF78_RS27140
BFF78_RS27140	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS27140	SM01294	BFF78_RS27140
BFF78_RS27145	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS27165	SM00822	BFF78_RS27165
BFF78_RS27165	SM00825	Beta-ketoacyl synthase
BFF78_RS27165	SM00826	BFF78_RS27165
BFF78_RS27165	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS27170	SM00822	BFF78_RS27170
BFF78_RS27170	SM00823	Phosphopantetheine attachment site
BFF78_RS27170	SM00825	Beta-ketoacyl synthase
BFF78_RS27170	SM00826	BFF78_RS27170
BFF78_RS27170	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS27170	SM01294	BFF78_RS27170
BFF78_RS27205	SM00822	BFF78_RS27205
BFF78_RS27205	SM00823	Phosphopantetheine attachment site
BFF78_RS27205	SM00825	Beta-ketoacyl synthase
BFF78_RS27205	SM00826	BFF78_RS27205
BFF78_RS27205	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS27205	SM01294	BFF78_RS27205
BFF78_RS27210	SM00923	MbtH-like protein
BFF78_RS27220	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS27275	SM00829	Enoylreductase
BFF78_RS27335	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS27335	SM00866	BFF78_RS27335
BFF78_RS27350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS27350	SM00866	BFF78_RS27350
BFF78_RS27425	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS27460	SM00240	Forkhead associated domain
BFF78_RS27465	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS27470	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS27470	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BFF78_RS27490	SM00062	Bacterial periplasmic substrate-binding proteins
BFF78_RS27525	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS27540	SM00507	HNH nucleases
BFF78_RS27580	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS27625	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BFF78_RS27720	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS27745	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BFF78_RS27745	SM01232	BFF78_RS27745
BFF78_RS27765	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS27810	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS27810	SM00994	ClpX C4-type zinc finger
BFF78_RS27810	SM01086	C-terminal, D2-small domain, of ClpB protein
BFF78_RS27835	SM00562	BFF78_RS27835
BFF78_RS27865	SM00880	BFF78_RS27865
BFF78_RS27865	SM01118	BFF78_RS27865
BFF78_RS27870	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS27975	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS27975	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFF78_RS27975	SM00091	PAS domain
BFF78_RS27975	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS27980	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS28015	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS28045	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BFF78_RS28090	SM00855	Phosphoglycerate mutase family
BFF78_RS28110	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
BFF78_RS28135	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BFF78_RS28140	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS28165	SM00838	Elongation factor G C-terminus
BFF78_RS28175	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS28180	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS28190	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS28200	SM00271	DnaJ molecular chaperone homology domain
BFF78_RS28225	SM00245	tail specific protease
BFF78_RS28250	SM01130	BFF78_RS28250
BFF78_RS28255	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFF78_RS28275	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS28275	SM01091	Transporter associated domain
BFF78_RS28295	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS28320	SM00938	Nitrogen regulatory protein P-II
BFF78_RS28335	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS28365	SM00917	LeuA allosteric (dimerisation) domain
BFF78_RS28380	SM00387	Histidine kinase-like ATPases
BFF78_RS28385	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS28385	SM00448	cheY-homologous receiver domain
BFF78_RS28395	SM01130	BFF78_RS28395
BFF78_RS28400	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS28405	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS28420	SM00014	Acid phosphatase homologues
BFF78_RS28440	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS28475	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS28520	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS28535	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS28580	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS28665	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BFF78_RS28685	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFF78_RS28695	SM00400	zinc finger
BFF78_RS28695	SM00493	BFF78_RS28695
BFF78_RS28695	SM00766	DNA primase DnaG DnaB-binding
BFF78_RS28705	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS28710	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS28830	SM00830	Chorismate mutase type II
BFF78_RS28855	SM00470	ParB-like nuclease domain
BFF78_RS28875	SM01012	BFF78_RS28875
BFF78_RS28925	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS28950	SM01029	Beta-galactosidase, domain 2
BFF78_RS28965	SM00100	Cyclic nucleotide-monophosphate binding domain
BFF78_RS29000	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS29015	SM00829	Enoylreductase
BFF78_RS29020	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BFF78_RS29040	SM00829	Enoylreductase
BFF78_RS29045	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS29075	SM01217	BFF78_RS29075
BFF78_RS29100	SM00825	Beta-ketoacyl synthase
BFF78_RS29115	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS29140	SM00422	helix_turn_helix, mercury resistance
BFF78_RS29360	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS29395	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS29430	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS29435	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS29505	SM00646	BFF78_RS29505
BFF78_RS29525	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS29575	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS29575	SM00448	cheY-homologous receiver domain
BFF78_RS29585	SM00387	Histidine kinase-like ATPases
BFF78_RS29595	SM00829	Enoylreductase
BFF78_RS29600	SM00822	BFF78_RS29600
BFF78_RS29620	SM00855	Phosphoglycerate mutase family
BFF78_RS29635	SM00955	BFF78_RS29635
BFF78_RS29645	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS29740	SM00320	WD40 repeats
BFF78_RS29770	SM00852	Probable molybdopterin binding domain
BFF78_RS29770	SM01329	BFF78_RS29770
BFF78_RS29830	SM00943	Bifunctional DNA primase/polymerase, N-terminal
BFF78_RS29910	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS29950	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS29960	SM00944	Pro-kumamolisin, activation domain
BFF78_RS29990	SM01230	BFF78_RS29990
BFF78_RS30030	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS30050	SM00642	Alpha-amylase domain
BFF78_RS30055	SM00632	BFF78_RS30055
BFF78_RS30055	SM00642	Alpha-amylase domain
BFF78_RS30060	SM00642	Alpha-amylase domain
BFF78_RS30100	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS30100	SM00448	cheY-homologous receiver domain
BFF78_RS30105	SM00387	Histidine kinase-like ATPases
BFF78_RS30115	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS30120	SM01230	BFF78_RS30120
BFF78_RS30175	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS30180	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS30185	SM01230	BFF78_RS30185
BFF78_RS30195	SM00903	Flavin reductase like domain
BFF78_RS30210	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS30245	SM00644	BFF78_RS30245
BFF78_RS30245	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
BFF78_RS30270	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS30270	SM00895	BFF78_RS30270
BFF78_RS30340	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BFF78_RS30370	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS30370	SM00448	cheY-homologous receiver domain
BFF78_RS30565	SM00563	Phosphate acyltransferases
BFF78_RS30575	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS30575	SM00448	cheY-homologous receiver domain
BFF78_RS30610	SM00518	AP endonuclease family 2
BFF78_RS30615	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS30615	SM00740	BFF78_RS30615
BFF78_RS30695	SM00460	Transglutaminase/protease-like homologues
BFF78_RS30710	SM00947	Carbonic anhydrase
BFF78_RS30765	SM00864	Tubulin/FtsZ family, GTPase domain
BFF78_RS30765	SM00865	Tubulin/FtsZ family, C-terminal domain
BFF78_RS30825	SM00822	BFF78_RS30825
BFF78_RS30860	SM00481	DNA polymerase alpha chain like domain
BFF78_RS30870	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS30890	SM00464	Found in ATP-dependent protease La (LON)
BFF78_RS30940	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS31065	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS31075	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS31095	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS31100	SM00830	Chorismate mutase type II
BFF78_RS31135	SM00448	cheY-homologous receiver domain
BFF78_RS31135	SM01012	BFF78_RS31135
BFF78_RS31140	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS31145	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS31175	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BFF78_RS31175	SM00474	3'-5' exonuclease
BFF78_RS31175	SM00475	5'-3' exonuclease
BFF78_RS31175	SM00482	DNA polymerase A domain
BFF78_RS31200	SM00487	DEAD-like helicases superfamily
BFF78_RS31200	SM00490	helicase superfamily c-terminal domain
BFF78_RS31200	SM00847	Helicase associated domain (HA2)  Add an annotation
BFF78_RS31210	SM00316	Ribosomal protein S1-like RNA-binding domain
BFF78_RS31225	SM00028	Tetratricopeptide repeats
BFF78_RS31250	SM00363	S4 RNA-binding domain
BFF78_RS31255	SM00986	Uracil DNA glycosylase superfamily
BFF78_RS31255	SM00987	UreE urease accessory protein, C-terminal domain 
BFF78_RS31315	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS31330	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS31345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS31420	SM00487	DEAD-like helicases superfamily
BFF78_RS31420	SM00490	helicase superfamily c-terminal domain
BFF78_RS31455	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS31465	SM00062	Bacterial periplasmic substrate-binding proteins
BFF78_RS31465	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BFF78_RS31470	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS31490	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS31510	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BFF78_RS31510	SM00465	GIY-YIG type nucleases (URI domain)
BFF78_RS31530	SM00631	BFF78_RS31530
BFF78_RS31535	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BFF78_RS31580	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS31600	SM00642	Alpha-amylase domain
BFF78_RS31640	SM00861	Transketolase, pyrimidine binding domain
BFF78_RS31670	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS31700	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS31745	SM01130	BFF78_RS31745
BFF78_RS31810	SM00829	Enoylreductase
BFF78_RS31830	SM00420	helix_turn_helix, Deoxyribose operon repressor
BFF78_RS31830	SM01134	BFF78_RS31830
BFF78_RS31840	SM01130	BFF78_RS31840
BFF78_RS31865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS31865	SM00895	BFF78_RS31865
BFF78_RS31870	SM01130	BFF78_RS31870
BFF78_RS31895	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS31895	SM00448	cheY-homologous receiver domain
BFF78_RS31915	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS31980	SM00028	Tetratricopeptide repeats
BFF78_RS31980	SM00671	Sel1-like repeats.
BFF78_RS31990	SM00062	Bacterial periplasmic substrate-binding proteins
BFF78_RS31990	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BFF78_RS32000	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32075	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS32075	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32105	SM00641	Glycosyl hydrolases family 25
BFF78_RS32110	SM01007	Class II Aldolase and Adducin N-terminal domain
BFF78_RS32130	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32195	SM00292	breast cancer carboxy-terminal domain
BFF78_RS32195	SM00479	BFF78_RS32195
BFF78_RS32260	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS32295	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS32325	SM00822	BFF78_RS32325
BFF78_RS32340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS32340	SM00895	BFF78_RS32340
BFF78_RS32355	SM00855	Phosphoglycerate mutase family
BFF78_RS32370	SM00240	Forkhead associated domain
BFF78_RS32370	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32390	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS32390	SM00387	Histidine kinase-like ATPases
BFF78_RS32395	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS32395	SM00448	cheY-homologous receiver domain
BFF78_RS32410	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32420	SM00244	prohibitin homologues
BFF78_RS32425	SM00507	HNH nucleases
BFF78_RS32495	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32510	SM00363	S4 RNA-binding domain
BFF78_RS32560	SM00028	Tetratricopeptide repeats
BFF78_RS32565	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BFF78_RS32565	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BFF78_RS32590	SM00363	S4 RNA-binding domain
BFF78_RS32630	SM00563	Phosphate acyltransferases
BFF78_RS32635	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32650	SM00257	Lysin motif
BFF78_RS32665	SM00014	Acid phosphatase homologues
BFF78_RS32715	SM00481	DNA polymerase alpha chain like domain
BFF78_RS32730	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS32770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS32780	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32820	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS32830	SM00028	Tetratricopeptide repeats
BFF78_RS32865	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS32880	SM00866	BFF78_RS32880
BFF78_RS32900	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BFF78_RS32915	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS32925	SM00829	Enoylreductase
BFF78_RS32935	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS32965	SM00422	helix_turn_helix, mercury resistance
BFF78_RS32970	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS32970	SM01043	Bacterial transcriptional activator domain
BFF78_RS32975	SM00822	BFF78_RS32975
BFF78_RS33040	SM00829	Enoylreductase
BFF78_RS33085	SM00822	BFF78_RS33085
BFF78_RS33100	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS33100	SM00895	BFF78_RS33100
BFF78_RS33115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BFF78_RS33115	SM00481	DNA polymerase alpha chain like domain
BFF78_RS33115	SM00483	DNA polymerase X family
BFF78_RS33125	SM00823	Phosphopantetheine attachment site
BFF78_RS33185	SM00855	Phosphoglycerate mutase family
BFF78_RS33210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS33210	SM00895	BFF78_RS33210
BFF78_RS33235	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS33240	SM01018	B12 binding domain
BFF78_RS33260	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS33260	SM00448	cheY-homologous receiver domain
BFF78_RS33290	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS33320	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS33375	SM00487	DEAD-like helicases superfamily
BFF78_RS33375	SM00490	helicase superfamily c-terminal domain
BFF78_RS33375	SM01142	BFF78_RS33375
BFF78_RS33385	SM00960	Roadblock/LC7 domain
BFF78_RS33420	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS33440	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BFF78_RS33440	SM00475	5'-3' exonuclease
BFF78_RS33445	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS33470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS33470	SM00895	BFF78_RS33470
BFF78_RS33475	SM01230	BFF78_RS33475
BFF78_RS33550	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BFF78_RS33555	SM00387	Histidine kinase-like ATPases
BFF78_RS33555	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS33565	SM00873	B3/4 domain
BFF78_RS33565	SM00874	tRNA synthetase B5 domain
BFF78_RS33565	SM00896	Ferredoxin-fold anticodon binding domain
BFF78_RS33570	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS33610	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS33615	SM00855	Phosphoglycerate mutase family
BFF78_RS33630	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BFF78_RS33675	SM00900	BFF78_RS33675
BFF78_RS33685	SM00900	BFF78_RS33685
BFF78_RS33695	SM00448	cheY-homologous receiver domain
BFF78_RS33695	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS33700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS33700	SM00387	Histidine kinase-like ATPases
BFF78_RS33700	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS33740	SM00563	Phosphate acyltransferases
BFF78_RS33770	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS33770	SM00930	BFF78_RS33770
BFF78_RS33810	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS33910	SM00479	BFF78_RS33910
BFF78_RS33925	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BFF78_RS33940	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS33940	SM00838	Elongation factor G C-terminus
BFF78_RS33940	SM00889	Elongation factor G, domain IV
BFF78_RS33985	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BFF78_RS33990	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS33995	SM01323	BFF78_RS33995
BFF78_RS34015	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BFF78_RS34015	SM00954	Region found in RelA / SpoT proteins
BFF78_RS34035	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS34060	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS34065	SM00756	BFF78_RS34065
BFF78_RS34070	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS34075	SM00363	S4 RNA-binding domain
BFF78_RS34075	SM01390	BFF78_RS34075
BFF78_RS34095	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BFF78_RS34100	SM00732	Likely ribonuclease with RNase H fold.
BFF78_RS34140	SM00841	Elongation factor P, C-terminal
BFF78_RS34140	SM01185	BFF78_RS34140
BFF78_RS34150	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS34175	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BFF78_RS34180	SM00851	MGS-like domain
BFF78_RS34180	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BFF78_RS34190	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BFF78_RS34200	SM00072	Guanylate kinase homologues.
BFF78_RS34205	SM01409	BFF78_RS34205
BFF78_RS34265	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS34265	SM01240	BFF78_RS34265
BFF78_RS34275	SM00344	helix_turn_helix ASNC type
BFF78_RS34280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS34280	SM00866	BFF78_RS34280
BFF78_RS34300	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS34310	SM00387	Histidine kinase-like ATPases
BFF78_RS34315	SM00960	Roadblock/LC7 domain
BFF78_RS34430	SM01091	Transporter associated domain
BFF78_RS34435	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS34440	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS34470	SM00636	BFF78_RS34470
BFF78_RS34495	SM00344	helix_turn_helix ASNC type
BFF78_RS34535	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS34550	SM00248	ankyrin repeats
BFF78_RS34575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS34575	SM00895	BFF78_RS34575
BFF78_RS34600	SM00387	Histidine kinase-like ATPases
BFF78_RS34605	SM00960	Roadblock/LC7 domain
BFF78_RS34630	SM00052	Putative diguanylate phosphodiesterase
BFF78_RS34630	SM00267	diguanylate cyclase
BFF78_RS34665	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS34735	SM00240	Forkhead associated domain
BFF78_RS34740	SM00422	helix_turn_helix, mercury resistance
BFF78_RS34750	SM00422	helix_turn_helix, mercury resistance
BFF78_RS34775	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS34860	SM00422	helix_turn_helix, mercury resistance
BFF78_RS34935	SM00822	BFF78_RS34935
BFF78_RS34950	SM00986	Uracil DNA glycosylase superfamily
BFF78_RS34950	SM00987	UreE urease accessory protein, C-terminal domain 
BFF78_RS35070	SM00829	Enoylreductase
BFF78_RS35075	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS35120	SM00458	Ricin-type beta-trefoil
BFF78_RS35125	SM00822	BFF78_RS35125
BFF78_RS35125	SM00825	Beta-ketoacyl synthase
BFF78_RS35125	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BFF78_RS35195	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS35210	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS35225	SM00881	CoA binding domain
BFF78_RS35235	SM00855	Phosphoglycerate mutase family
BFF78_RS35255	SM00344	helix_turn_helix ASNC type
BFF78_RS35260	SM00450	Rhodanese Homology Domain
BFF78_RS35300	SM00344	helix_turn_helix ASNC type
BFF78_RS35335	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS35335	SM00866	BFF78_RS35335
BFF78_RS35365	SM00998	Adenylosuccinate lyase C-terminus
BFF78_RS35375	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS35380	SM01091	Transporter associated domain
BFF78_RS35405	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS35435	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS35435	SM00876	Biotin and Thiamin Synthesis associated domain
BFF78_RS35450	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS35520	SM00563	Phosphate acyltransferases
BFF78_RS35530	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS35530	SM00091	PAS domain
BFF78_RS35530	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS35545	SM00344	helix_turn_helix ASNC type
BFF78_RS35630	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS35635	SM00829	Enoylreductase
BFF78_RS35690	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS35710	SM01092	CO dehydrogenase flavoprotein C-terminal domain
BFF78_RS35715	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BFF78_RS35740	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS35745	SM00028	Tetratricopeptide repeats
BFF78_RS35745	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS35745	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS35745	SM01043	Bacterial transcriptional activator domain
BFF78_RS35785	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS35785	SM01043	Bacterial transcriptional activator domain
BFF78_RS35815	SM00923	MbtH-like protein
BFF78_RS35825	SM00823	Phosphopantetheine attachment site
BFF78_RS35840	SM00823	Phosphopantetheine attachment site
BFF78_RS35840	SM00825	Beta-ketoacyl synthase
BFF78_RS35865	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS35925	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BFF78_RS35945	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BFF78_RS35955	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS35980	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS36000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS36010	SM00320	WD40 repeats
BFF78_RS36015	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BFF78_RS36025	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS36120	SM00028	Tetratricopeptide repeats
BFF78_RS36120	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS36120	SM01043	Bacterial transcriptional activator domain
BFF78_RS36145	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
BFF78_RS36205	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS36225	SM00870	BFF78_RS36225
BFF78_RS36270	SM00028	Tetratricopeptide repeats
BFF78_RS36270	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS36270	SM00320	WD40 repeats
BFF78_RS36325	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS36340	SM00478	endonuclease III
BFF78_RS36370	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS36375	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS36430	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS36435	SM00644	BFF78_RS36435
BFF78_RS36505	SM00387	Histidine kinase-like ATPases
BFF78_RS36510	SM00960	Roadblock/LC7 domain
BFF78_RS36530	SM00960	Roadblock/LC7 domain
BFF78_RS36545	SM00487	DEAD-like helicases superfamily
BFF78_RS36545	SM00490	helicase superfamily c-terminal domain
BFF78_RS36565	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS36585	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS36590	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS36610	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS36680	SM00344	helix_turn_helix ASNC type
BFF78_RS36705	SM00986	Uracil DNA glycosylase superfamily
BFF78_RS36705	SM00987	UreE urease accessory protein, C-terminal domain 
BFF78_RS36740	SM00487	DEAD-like helicases superfamily
BFF78_RS36740	SM00490	helicase superfamily c-terminal domain
BFF78_RS36760	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS36805	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS36875	SM00563	Phosphate acyltransferases
BFF78_RS36890	SM00903	Flavin reductase like domain
BFF78_RS36895	SM00893	Electron transfer flavoprotein domain
BFF78_RS36900	SM00893	Electron transfer flavoprotein domain
BFF78_RS36910	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS36920	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS36930	SM00776	BFF78_RS36930
BFF78_RS36960	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS36985	SM00387	Histidine kinase-like ATPases
BFF78_RS36990	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS36990	SM00448	cheY-homologous receiver domain
BFF78_RS37005	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS37030	SM00420	helix_turn_helix, Deoxyribose operon repressor
BFF78_RS37030	SM01134	BFF78_RS37030
BFF78_RS37090	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS37120	SM00960	Roadblock/LC7 domain
BFF78_RS37145	SM00420	helix_turn_helix, Deoxyribose operon repressor
BFF78_RS37145	SM01134	BFF78_RS37145
BFF78_RS37155	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS37155	SM00710	Parallel beta-helix repeats
BFF78_RS37155	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
BFF78_RS37215	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS37255	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS37280	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS37330	SM00357	Cold shock protein domain
BFF78_RS37335	SM00487	DEAD-like helicases superfamily
BFF78_RS37335	SM00490	helicase superfamily c-terminal domain
BFF78_RS37430	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS37455	SM00944	Pro-kumamolisin, activation domain
BFF78_RS37460	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS37485	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS37545	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS37590	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS37655	SM00320	WD40 repeats
BFF78_RS37655	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS37655	SM00564	beta-propeller repeat
BFF78_RS37665	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS37675	SM00327	von Willebrand factor (vWF) type A domain
BFF78_RS37680	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS37735	SM00829	Enoylreductase
BFF78_RS37760	SM00829	Enoylreductase
BFF78_RS37770	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS37770	SM00091	PAS domain
BFF78_RS37770	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS37790	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS37815	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS37860	SM01321	BFF78_RS37860
BFF78_RS37920	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS37940	SM00458	Ricin-type beta-trefoil
BFF78_RS37945	SM00458	Ricin-type beta-trefoil
BFF78_RS37960	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS38020	SM00829	Enoylreductase
BFF78_RS38060	SM00387	Histidine kinase-like ATPases
BFF78_RS38065	SM00960	Roadblock/LC7 domain
BFF78_RS38095	SM00823	Phosphopantetheine attachment site
BFF78_RS38135	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
BFF78_RS38155	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS38155	SM00091	PAS domain
BFF78_RS38155	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS38170	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS38210	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS38260	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS38260	SM00866	BFF78_RS38260
BFF78_RS38275	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS38320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS38320	SM00895	BFF78_RS38320
BFF78_RS38360	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS38380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BFF78_RS38405	SM00829	Enoylreductase
BFF78_RS38415	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS38445	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS38445	SM00091	PAS domain
BFF78_RS38445	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS38480	SM00060	Fibronectin type 3 domain
BFF78_RS38495	SM01120	BFF78_RS38495
BFF78_RS38520	SM01012	BFF78_RS38520
BFF78_RS38545	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS38545	SM00448	cheY-homologous receiver domain
BFF78_RS38560	SM00829	Enoylreductase
BFF78_RS38565	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS38575	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS38575	SM00387	Histidine kinase-like ATPases
BFF78_RS38580	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS38585	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS38605	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS38625	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS38660	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS38740	SM00644	BFF78_RS38740
BFF78_RS38755	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BFF78_RS38755	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS38820	SM00422	helix_turn_helix, mercury resistance
BFF78_RS38855	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS39025	SM00240	Forkhead associated domain
BFF78_RS39025	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS39035	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS39060	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS39090	SM00100	Cyclic nucleotide-monophosphate binding domain
BFF78_RS39095	SM00829	Enoylreductase
BFF78_RS39175	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS39190	SM00028	Tetratricopeptide repeats
BFF78_RS39225	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS39235	SM00387	Histidine kinase-like ATPases
BFF78_RS39240	SM00448	cheY-homologous receiver domain
BFF78_RS39270	SM00357	Cold shock protein domain
BFF78_RS39320	SM00320	WD40 repeats
BFF78_RS39340	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS39370	SM00448	cheY-homologous receiver domain
BFF78_RS39370	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS39375	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS39375	SM00387	Histidine kinase-like ATPases
BFF78_RS39375	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS39400	SM00100	Cyclic nucleotide-monophosphate binding domain
BFF78_RS39450	SM00642	Alpha-amylase domain
BFF78_RS39460	SM00642	Alpha-amylase domain
BFF78_RS39465	SM00642	Alpha-amylase domain
BFF78_RS39480	SM00642	Alpha-amylase domain
BFF78_RS39490	SM01012	BFF78_RS39490
BFF78_RS39500	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS39545	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS39555	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS39560	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS39575	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS39600	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS39600	SM00091	PAS domain
BFF78_RS39600	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS39695	SM00344	helix_turn_helix ASNC type
BFF78_RS39700	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS39790	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BFF78_RS39810	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS39845	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BFF78_RS39870	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS39880	SM01012	BFF78_RS39880
BFF78_RS39945	SM00641	Glycosyl hydrolases family 25
BFF78_RS39970	SM00354	helix_turn _helix lactose operon repressor
BFF78_RS39995	SM01012	BFF78_RS39995
BFF78_RS40105	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS40110	SM00421	helix_turn_helix, Lux Regulon
BFF78_RS40110	SM00448	cheY-homologous receiver domain
BFF78_RS40155	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS40180	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BFF78_RS40265	SM00448	cheY-homologous receiver domain
BFF78_RS40265	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS40270	SM00387	Histidine kinase-like ATPases
BFF78_RS40270	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS40295	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS40305	SM00458	Ricin-type beta-trefoil
BFF78_RS40310	SM00458	Ricin-type beta-trefoil
BFF78_RS40335	SM00342	helix_turn_helix, arabinose operon control protein
BFF78_RS40380	SM00822	BFF78_RS40380
BFF78_RS40395	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS40400	SM00829	Enoylreductase
BFF78_RS40450	SM00796	Allophanate hydrolase subunit 1
BFF78_RS40455	SM00797	Allophanate hydrolase subunit 2
BFF78_RS40495	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS40525	SM00450	Rhodanese Homology Domain
BFF78_RS40555	SM00854	Bacterial capsule synthesis protein PGA_cap
BFF78_RS40565	SM00116	Domain in cystathionine beta-synthase and other proteins.
BFF78_RS40570	SM00829	Enoylreductase
BFF78_RS40575	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS40595	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS40615	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS40670	SM00346	helix_turn_helix isocitrate lyase regulation
BFF78_RS40690	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BFF78_RS40700	SM01150	BFF78_RS40700
BFF78_RS40715	SM00650	Ribosomal RNA adenine dimethylases
BFF78_RS40740	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS40770	SM00448	cheY-homologous receiver domain
BFF78_RS40770	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS40775	SM00387	Histidine kinase-like ATPases
BFF78_RS40775	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS40795	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS40815	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS40855	SM00881	CoA binding domain
BFF78_RS40890	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS41040	SM00984	UDP binding domain
BFF78_RS41095	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS41095	SM00387	Histidine kinase-like ATPases
BFF78_RS41095	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS41100	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS41100	SM00387	Histidine kinase-like ATPases
BFF78_RS41100	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS41105	SM00448	cheY-homologous receiver domain
BFF78_RS41105	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS41175	SM00729	Elongator protein 3, MiaB family, Radical SAM
BFF78_RS41190	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS41200	SM00825	Beta-ketoacyl synthase
BFF78_RS41255	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS41255	SM00091	PAS domain
BFF78_RS41255	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS41260	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS41280	SM00448	cheY-homologous receiver domain
BFF78_RS41280	SM00862	Transcriptional regulatory protein, C terminal
BFF78_RS41285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BFF78_RS41285	SM00387	Histidine kinase-like ATPases
BFF78_RS41285	SM00388	His Kinase A (phosphoacceptor) domain
BFF78_RS41430	SM00530	Helix-turn-helix XRE-family like proteins 
BFF78_RS41435	SM00947	Carbonic anhydrase
BFF78_RS41520	SM00382	ATPases associated with a variety of cellular activities
BFF78_RS41550	SM00320	WD40 repeats
BFF78_RS41555	SM00458	Ricin-type beta-trefoil
BFF78_RS41560	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS41615	SM00855	Phosphoglycerate mutase family
BFF78_RS41655	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BFF78_RS41655	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS41725	SM00347	helix_turn_helix multiple antibiotic resistance protein
BFF78_RS41740	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS41780	SM00220	Serine/Threonine protein kinases, catalytic domain
BFF78_RS41840	SM00271	DnaJ molecular chaperone homology domain
BFF78_RS41880	SM00487	DEAD-like helicases superfamily
BFF78_RS41880	SM00490	helicase superfamily c-terminal domain
BFF78_RS41895	SM00849	Metallo-beta-lactamase superfamily
BFF78_RS41900	SM00357	Cold shock protein domain
BFF78_RS41930	SM00458	Ricin-type beta-trefoil
BFF78_RS41960	SM00331	Sigma factor PP2C-like phosphatases
BFF78_RS42055	SM00829	Enoylreductase
BFF78_RS42145	SM00331	Sigma factor PP2C-like phosphatases
