locus-tag	class	description
JIX55_RS00015	COG0156	8-amino-7-oxononanoate synthase activity
JIX55_RS00025	COG0142	geranyltranstransferase activity
JIX55_RS00075	COG0515	serine threonine protein kinase
JIX55_RS00075	COG2815	serine threonine protein kinase
JIX55_RS00160	COG3547	Transposase (IS116 IS110 IS902 family)
JIX55_RS00260	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JIX55_RS00320	COG2197	response regulator
JIX55_RS00325	COG4585	Histidine kinase
JIX55_RS00330	COG2409	Drug exporters of the RND superfamily
JIX55_RS00335	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS00345	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS00370	COG0431	NADPH-dependent FMN reductase
JIX55_RS00380	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS00385	COG0745	RESPONSE REGULATOR receiver
JIX55_RS00410	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS00415	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JIX55_RS00440	COG1116	anion transmembrane transporter activity
JIX55_RS00440	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JIX55_RS00445	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JIX55_RS00455	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JIX55_RS00485	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JIX55_RS00495	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS00640	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JIX55_RS00650	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS00655	COG1609	Transcriptional regulator
JIX55_RS00665	COG0148	phosphopyruvate hydratase activity
JIX55_RS00680	COG1063	alcohol dehydrogenase
JIX55_RS00685	COG0583	DNA-binding transcription factor activity
JIX55_RS00715	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JIX55_RS00725	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS00730	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS00740	COG4584	PFAM Integrase catalytic
JIX55_RS00790	COG0471	metal ion transport
JIX55_RS00830	COG1140	nitrate reductase beta subunit
JIX55_RS00835	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JIX55_RS00855	COG2824	Alkylphosphonate utilization operon protein PhnA
JIX55_RS00865	COG0659	secondary active sulfate transmembrane transporter activity
JIX55_RS00895	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JIX55_RS00915	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JIX55_RS00915	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS00965	COG1454	alcohol dehydrogenase
JIX55_RS00965	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS00985	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JIX55_RS01015	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS01035	COG0549	Belongs to the carbamate kinase family
JIX55_RS01050	COG0517	IMP dehydrogenase activity
JIX55_RS01050	COG0516	GMP reductase activity
JIX55_RS01065	COG0517	IMP dehydrogenase activity
JIX55_RS01065	COG0516	GMP reductase activity
JIX55_RS01070	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS01070	COG1042	CoA-binding domain protein
JIX55_RS01070	COG0045	succinate-CoA ligase (ADP-forming) activity
JIX55_RS01075	COG2326	polyphosphate kinase activity
JIX55_RS01110	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS01110	COG2319	Wd-40 repeat
JIX55_RS01155	COG1309	transcriptional regulator
JIX55_RS01165	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS01180	COG2315	Protein conserved in bacteria
JIX55_RS01195	COG2255	four-way junction helicase activity
JIX55_RS01215	COG4221	oxidoreductase activity
JIX55_RS01220	COG1902	pentaerythritol trinitrate reductase activity
JIX55_RS01245	COG3959	Transketolase, thiamine diphosphate binding domain
JIX55_RS01250	COG3958	Transketolase
JIX55_RS01260	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS01270	COG1129	ABC transporter
JIX55_RS01320	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS01325	COG1278	Cold shock
JIX55_RS01360	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS01365	COG0667	Aldo Keto reductase
JIX55_RS01370	COG1309	transcriptional regulator
JIX55_RS01375	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS01385	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS01405	COG1024	Enoyl-CoA hydratase
JIX55_RS01405	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS01420	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS01440	COG4677	pectinesterase activity
JIX55_RS01455	COG3959	Transketolase, thiamine diphosphate binding domain
JIX55_RS01460	COG3958	Transketolase
JIX55_RS01465	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JIX55_RS01470	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS01480	COG0738	Major facilitator superfamily
JIX55_RS01495	COG1414	Transcriptional regulator
JIX55_RS01500	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JIX55_RS01510	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS01510	COG3848	Pyruvate phosphate dikinase
JIX55_RS01560	COG0277	FAD linked oxidase domain protein
JIX55_RS01565	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS01570	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS01580	COG0583	DNA-binding transcription factor activity
JIX55_RS01605	COG2124	cytochrome p450
JIX55_RS01625	COG1309	transcriptional regulator
JIX55_RS01640	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JIX55_RS01650	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS01655	COG1959	2 iron, 2 sulfur cluster binding
JIX55_RS01675	COG2249	NAD(P)H dehydrogenase (quinone) activity
JIX55_RS01685	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS01695	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JIX55_RS01715	COG2815	serine threonine protein kinase
JIX55_RS01715	COG0515	serine threonine protein kinase
JIX55_RS01745	COG2197	response regulator
JIX55_RS01750	COG4585	Histidine kinase
JIX55_RS01785	COG1335	isochorismatase
JIX55_RS01810	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JIX55_RS01950	COG2124	cytochrome p450
JIX55_RS01975	COG1349	DNA-binding transcription factor activity
JIX55_RS01995	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS02020	COG3842	ATPase activity
JIX55_RS02035	COG2193	ferroxidase activity
JIX55_RS02050	COG3655	Transcriptional regulator
JIX55_RS02100	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
JIX55_RS02105	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
JIX55_RS02110	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
JIX55_RS02140	COG0673	inositol 2-dehydrogenase activity
JIX55_RS02165	COG0667	Aldo Keto reductase
JIX55_RS02170	COG0667	Aldo Keto reductase
JIX55_RS02210	COG0667	Aldo Keto reductase
JIX55_RS02235	COG0667	Aldo Keto reductase
JIX55_RS02245	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS02255	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS02260	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS02265	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS02285	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS02290	COG1309	transcriptional regulator
JIX55_RS02300	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS02320	COG1408	metallophosphoesterase
JIX55_RS02335	COG0667	Aldo Keto reductase
JIX55_RS02340	COG0667	Aldo Keto reductase
JIX55_RS02420	COG0300	oxidoreductase activity
JIX55_RS02440	COG0494	nUDIX hydrolase
JIX55_RS02510	COG0395	ABC-type sugar transport system, permease component
JIX55_RS02665	COG1349	DNA-binding transcription factor activity
JIX55_RS02670	COG0395	ABC-type sugar transport system, permease component
JIX55_RS02685	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JIX55_RS02700	COG0366	Alpha amylase catalytic
JIX55_RS02700	COG1470	cell adhesion involved in biofilm formation
JIX55_RS02745	COG0604	alcohol dehydrogenase
JIX55_RS02830	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS02915	COG0640	Transcriptional regulator
JIX55_RS02920	COG3940	Belongs to the glycosyl hydrolase 43 family
JIX55_RS02925	COG3507	Belongs to the glycosyl hydrolase 43 family
JIX55_RS02930	COG0395	ABC-type sugar transport system, permease component
JIX55_RS02935	COG1175	transmembrane transport
JIX55_RS02960	COG0202	RNA polymerase activity
JIX55_RS02965	COG1090	epimerase
JIX55_RS03020	COG1473	amidohydrolase
JIX55_RS03030	COG3655	Transcriptional regulator
JIX55_RS03050	COG0726	polysaccharide deacetylase
JIX55_RS03060	COG1802	Transcriptional regulator
JIX55_RS03075	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JIX55_RS03090	COG0596	Alpha beta hydrolase
JIX55_RS03095	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS03100	COG1942	4-Oxalocrotonate Tautomerase
JIX55_RS03105	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS03110	COG1349	DNA-binding transcription factor activity
JIX55_RS03125	COG0395	ABC-type sugar transport system, permease component
JIX55_RS03130	COG1063	alcohol dehydrogenase
JIX55_RS03160	COG1024	Enoyl-CoA hydratase
JIX55_RS03170	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JIX55_RS03170	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS03175	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS03185	COG0183	Belongs to the thiolase family
JIX55_RS03190	COG0300	oxidoreductase activity
JIX55_RS03195	COG1309	transcriptional regulator
JIX55_RS03205	COG0508	dehydrogenase complex catalyzes the overall conversion of
JIX55_RS03210	COG0022	dehydrogenase e1 component
JIX55_RS03215	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JIX55_RS03225	COG4638	Rieske (2fe-2S)
JIX55_RS03230	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS03245	COG2130	NADP-dependent
JIX55_RS03260	COG4638	Rieske (2fe-2S)
JIX55_RS03270	COG1129	ABC transporter
JIX55_RS03275	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS03280	COG1063	alcohol dehydrogenase
JIX55_RS03295	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS03310	COG0183	Belongs to the thiolase family
JIX55_RS03320	COG1703	isobutyryl-CoA mutase activity
JIX55_RS03320	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS03320	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS03340	COG2814	Major facilitator Superfamily
JIX55_RS03345	COG1073	alpha beta
JIX55_RS03350	COG3250	beta-galactosidase activity
JIX55_RS03360	COG1609	Transcriptional regulator
JIX55_RS03365	COG0747	negative chemotaxis
JIX55_RS03375	COG0444	Belongs to the ABC transporter superfamily
JIX55_RS03380	COG4172	Belongs to the ABC transporter superfamily
JIX55_RS03405	COG3401	FG-GAP repeat protein
JIX55_RS03425	COG0456	acetyltransferase
JIX55_RS03435	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
JIX55_RS03465	COG1191	sigma factor activity
JIX55_RS03480	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS03485	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS03490	COG2172	sigma factor antagonist activity
JIX55_RS03560	COG0583	DNA-binding transcription factor activity
JIX55_RS03565	COG0251	oxidation-reduction process
JIX55_RS03570	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JIX55_RS03575	COG0697	spore germination
JIX55_RS03590	COG0667	Aldo Keto reductase
JIX55_RS03595	COG0477	Major facilitator Superfamily
JIX55_RS03610	COG0494	nUDIX hydrolase
JIX55_RS03650	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS03650	COG2319	Wd-40 repeat
JIX55_RS03655	COG0726	polysaccharide deacetylase
JIX55_RS03660	COG0328	RNA-DNA hybrid ribonuclease activity
JIX55_RS03700	COG0740	serine-type endopeptidase activity
JIX55_RS03705	COG0740	serine-type endopeptidase activity
JIX55_RS03715	COG2318	DinB family
JIX55_RS03740	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS03750	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS03765	COG3486	L-lysine 6-monooxygenase (NADPH) activity
JIX55_RS03770	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JIX55_RS03775	COG1120	ATPase activity
JIX55_RS03780	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS03785	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS03800	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JIX55_RS03805	COG1132	(ABC) transporter
JIX55_RS03820	COG0477	Major facilitator Superfamily
JIX55_RS03830	COG0698	ribose 5-phosphate isomerase
JIX55_RS03845	COG0842	Transport permease protein
JIX55_RS03845	COG1131	(ABC) transporter
JIX55_RS03845	COG1716	ATPase activity
JIX55_RS03865	COG0667	Aldo Keto reductase
JIX55_RS03870	COG0583	DNA-binding transcription factor activity
JIX55_RS03880	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JIX55_RS03885	COG0346	lactoylglutathione lyase activity
JIX55_RS03905	COG0667	Aldo Keto reductase
JIX55_RS03920	COG0745	RESPONSE REGULATOR receiver
JIX55_RS03980	COG3594	Acyltransferase
JIX55_RS04010	COG4191	Histidine kinase
JIX55_RS04075	COG2267	carboxylic ester hydrolase activity
JIX55_RS04080	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS04085	COG2366	antibiotic biosynthetic process
JIX55_RS04100	COG2070	2-Nitropropane dioxygenase
JIX55_RS04105	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS04125	COG0515	serine threonine protein kinase
JIX55_RS04140	COG1131	(ABC) transporter
JIX55_RS04150	COG4585	Histidine kinase
JIX55_RS04160	COG2755	lipolytic protein G-D-S-L family
JIX55_RS04160	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JIX55_RS04200	COG0604	alcohol dehydrogenase
JIX55_RS04200	COG3321	synthase
JIX55_RS04200	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS04205	COG2267	carboxylic ester hydrolase activity
JIX55_RS04230	COG1309	transcriptional regulator
JIX55_RS04235	COG1902	pentaerythritol trinitrate reductase activity
JIX55_RS04250	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS04260	COG4221	oxidoreductase activity
JIX55_RS04290	COG0076	glutamate decarboxylase activity
JIX55_RS04310	COG2267	carboxylic ester hydrolase activity
JIX55_RS04340	COG2409	Drug exporters of the RND superfamily
JIX55_RS04345	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JIX55_RS04365	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS04370	COG0243	molybdopterin cofactor binding
JIX55_RS04380	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS04395	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JIX55_RS04435	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS04460	COG1309	transcriptional regulator
JIX55_RS04485	COG1309	transcriptional regulator
JIX55_RS04490	COG0667	Aldo Keto reductase
JIX55_RS04500	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS04530	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS04535	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS04540	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS04545	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS04565	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JIX55_RS04570	COG1121	(ABC) transporter
JIX55_RS04575	COG0803	Belongs to the bacterial solute-binding protein 9 family
JIX55_RS04585	COG0459	protein refolding
JIX55_RS04590	COG1063	alcohol dehydrogenase
JIX55_RS04620	COG3350	monooxygenase activity
JIX55_RS04635	COG2205	protein histidine kinase activity
JIX55_RS04640	COG0745	RESPONSE REGULATOR receiver
JIX55_RS04655	COG1309	transcriptional regulator
JIX55_RS04660	COG2267	carboxylic ester hydrolase activity
JIX55_RS04670	COG1073	alpha beta
JIX55_RS04675	COG0655	NAD(P)H dehydrogenase (quinone) activity
JIX55_RS04705	COG1063	alcohol dehydrogenase
JIX55_RS04730	COG1609	Transcriptional regulator
JIX55_RS04745	COG0395	ABC-type sugar transport system, permease component
JIX55_RS04760	COG0237	dephospho-CoA kinase activity
JIX55_RS04800	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS04805	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS04810	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS04835	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JIX55_RS04845	COG2124	cytochrome p450
JIX55_RS04855	COG2423	ornithine cyclodeaminase activity
JIX55_RS04870	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS04875	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JIX55_RS04885	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS04890	COG1309	transcriptional regulator
JIX55_RS04900	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS04915	COG0183	Belongs to the thiolase family
JIX55_RS04930	COG1309	transcriptional regulator
JIX55_RS04935	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS04985	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS04990	COG1063	alcohol dehydrogenase
JIX55_RS04995	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS05000	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS05025	COG2079	MmgE PrpD family protein
JIX55_RS05055	COG1129	ABC transporter
JIX55_RS05070	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS05075	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
JIX55_RS05080	COG2301	Belongs to the HpcH HpaI aldolase family
JIX55_RS05085	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JIX55_RS05090	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JIX55_RS05100	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JIX55_RS05105	COG2181	nitrate reductase activity
JIX55_RS05105	COG0247	lactate metabolic process
JIX55_RS05110	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JIX55_RS05125	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS05135	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS05150	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JIX55_RS05160	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS05170	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS05185	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS05195	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS05200	COG1024	Enoyl-CoA hydratase
JIX55_RS05205	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS05210	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS05215	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JIX55_RS05220	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS05230	COG3608	succinylglutamate desuccinylase aspartoacylase
JIX55_RS05230	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JIX55_RS05235	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS05240	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS05245	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS05320	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
JIX55_RS05345	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JIX55_RS05360	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS05385	COG1063	alcohol dehydrogenase
JIX55_RS05430	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS05450	COG0019	diaminopimelate decarboxylase activity
JIX55_RS05455	COG4264	IucA IucC family
JIX55_RS05460	COG2814	Major facilitator Superfamily
JIX55_RS05470	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JIX55_RS05475	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JIX55_RS05480	COG1120	ATPase activity
JIX55_RS05485	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS05490	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS05515	COG0702	epimerase
JIX55_RS05520	COG1595	DNA-templated transcription, initiation
JIX55_RS05525	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JIX55_RS05545	COG0583	DNA-binding transcription factor activity
JIX55_RS05550	COG1522	sequence-specific DNA binding
JIX55_RS05580	COG1063	alcohol dehydrogenase
JIX55_RS05585	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS05595	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS05610	COG1846	Transcriptional regulator
JIX55_RS05630	COG2030	dehydratase
JIX55_RS05630	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS05635	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS05640	COG2814	Major facilitator Superfamily
JIX55_RS05655	COG0640	Transcriptional regulator
JIX55_RS05700	COG0310	cobalt ion transport
JIX55_RS05705	COG1930	Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import
JIX55_RS05715	COG1122	ATPase activity
JIX55_RS05720	COG3618	amidohydrolase
JIX55_RS05735	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS05740	COG4948	Mandelate Racemase Muconate Lactonizing
JIX55_RS05745	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS05755	COG1129	ABC transporter
JIX55_RS05760	COG4214	carbohydrate transport
JIX55_RS05765	COG2188	Transcriptional regulator
JIX55_RS05775	COG2197	response regulator
JIX55_RS05800	COG3250	beta-galactosidase activity
JIX55_RS05815	COG1175	transmembrane transport
JIX55_RS05820	COG1609	Transcriptional regulator
JIX55_RS05850	COG3507	Belongs to the glycosyl hydrolase 43 family
JIX55_RS05855	COG1609	Transcriptional regulator
JIX55_RS05865	COG1609	Transcriptional regulator
JIX55_RS05875	COG4171	peptide transport system, permease
JIX55_RS05900	COG1301	dicarboxylic acid transport
JIX55_RS05905	COG1929	Belongs to the glycerate kinase type-1 family
JIX55_RS05910	COG0583	DNA-binding transcription factor activity
JIX55_RS05935	COG1653	transport
JIX55_RS05940	COG1175	transmembrane transport
JIX55_RS05945	COG0395	ABC-type sugar transport system, permease component
JIX55_RS05955	COG3386	PFAM SMP-30 Gluconolaconase
JIX55_RS05965	COG0800	Aldolase
JIX55_RS05970	COG4948	Mandelate Racemase Muconate Lactonizing
JIX55_RS05975	COG1802	Transcriptional regulator
JIX55_RS05980	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS05990	COG1175	transmembrane transport
JIX55_RS05995	COG0395	ABC-type sugar transport system, permease component
JIX55_RS06000	COG3250	beta-galactosidase activity
JIX55_RS06010	COG2376	Dihydroxyacetone kinase
JIX55_RS06015	COG1461	Dihydroxyacetone kinase
JIX55_RS06045	COG1902	pentaerythritol trinitrate reductase activity
JIX55_RS06045	COG0446	pyridine nucleotide-disulphide oxidoreductase
JIX55_RS06050	COG2890	protein-(glutamine-N5) methyltransferase activity
JIX55_RS06060	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JIX55_RS06080	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JIX55_RS06085	COG3458	cephalosporin-C deacetylase activity
JIX55_RS06095	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS06105	COG0366	Alpha amylase catalytic
JIX55_RS06115	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JIX55_RS06120	COG1686	Belongs to the peptidase S11 family
JIX55_RS06135	COG2066	Belongs to the glutaminase family
JIX55_RS06150	COG1113	amino acid transport
JIX55_RS06160	COG1968	undecaprenyl-diphosphatase activity
JIX55_RS06165	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JIX55_RS06170	COG1993	acr, cog1993
JIX55_RS06175	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JIX55_RS06205	COG1175	transmembrane transport
JIX55_RS06210	COG0395	ABC-type sugar transport system, permease component
JIX55_RS06245	COG0366	Alpha amylase catalytic
JIX55_RS06255	COG3281	Trehalose synthase
JIX55_RS06260	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JIX55_RS06325	COG3591	Belongs to the peptidase S1B family
JIX55_RS06325	COG1864	DNA RNA non-specific endonuclease
JIX55_RS06350	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JIX55_RS06395	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JIX55_RS06400	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JIX55_RS06410	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS06440	COG0714	Associated with various cellular activities
JIX55_RS06455	COG2197	response regulator
JIX55_RS06460	COG4585	Histidine kinase
JIX55_RS06465	COG1136	(ABC) transporter
JIX55_RS06485	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS06535	COG1215	transferase activity, transferring glycosyl groups
JIX55_RS06575	COG1349	DNA-binding transcription factor activity
JIX55_RS06610	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JIX55_RS06625	COG0463	Glycosyl transferase, family 2
JIX55_RS06635	COG1940	carbohydrate kinase activity
JIX55_RS06645	COG2813	Specifically methylates the guanine in position
JIX55_RS06695	COG0738	Major facilitator superfamily
JIX55_RS06720	COG2197	response regulator
JIX55_RS06725	COG4585	Histidine kinase
JIX55_RS06740	COG0445	tRNA wobble uridine modification
JIX55_RS06750	COG1660	Displays ATPase and GTPase activities
JIX55_RS06775	COG0515	serine threonine protein kinase
JIX55_RS06790	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JIX55_RS06815	COG0204	Acyl-transferase
JIX55_RS06840	COG0584	glycerophosphoryl diester phosphodiesterase
JIX55_RS06860	COG0667	Aldo Keto reductase
JIX55_RS06865	COG1846	Transcriptional regulator
JIX55_RS06885	COG0671	phosphoesterase, PA-phosphatase related
JIX55_RS06895	COG1309	transcriptional regulator
JIX55_RS06925	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JIX55_RS06935	COG3509	depolymerase
JIX55_RS06940	COG3509	depolymerase
JIX55_RS06940	COG3693	PFAM glycoside hydrolase, family 10
JIX55_RS06965	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JIX55_RS06995	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JIX55_RS07025	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JIX55_RS07030	COG2151	metal-sulfur cluster biosynthetic enzyme
JIX55_RS07035	COG3396	Phenylacetate-CoA oxygenase
JIX55_RS07040	COG3460	Phenylacetate-CoA oxygenase
JIX55_RS07045	COG3396	Phenylacetate-CoA oxygenase
JIX55_RS07050	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JIX55_RS07055	COG0531	amino acid
JIX55_RS07075	COG1653	transport
JIX55_RS07080	COG1175	transmembrane transport
JIX55_RS07085	COG0395	ABC-type sugar transport system, permease component
JIX55_RS07090	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS07095	COG4948	Mandelate Racemase Muconate Lactonizing
JIX55_RS07100	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JIX55_RS07110	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JIX55_RS07130	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS07135	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS07140	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS07180	COG0714	Associated with various cellular activities
JIX55_RS07190	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS07205	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JIX55_RS07240	COG1174	glycine betaine transport
JIX55_RS07245	COG1174	glycine betaine transport
JIX55_RS07275	COG0135	phosphoribosylanthranilate isomerase activity
JIX55_RS07280	COG3835	regulator
JIX55_RS07290	COG1316	TRANSCRIPTIONal
JIX55_RS07300	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JIX55_RS07320	COG2909	trisaccharide binding
JIX55_RS07320	COG2909	trisaccharide binding
JIX55_RS07325	COG0129	dihydroxy-acid dehydratase activity
JIX55_RS07335	COG1063	alcohol dehydrogenase
JIX55_RS07365	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS07380	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JIX55_RS07385	COG2192	nodulation
JIX55_RS07405	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS07410	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JIX55_RS07415	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JIX55_RS07415	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JIX55_RS07435	COG1982	Orn Lys Arg decarboxylase major
JIX55_RS07440	COG2308	Evidence 4 Homologs of previously reported genes of
JIX55_RS07440	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
JIX55_RS07445	COG0367	asparagine synthase
JIX55_RS07455	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JIX55_RS07505	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JIX55_RS07525	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
JIX55_RS07540	COG2814	Major facilitator Superfamily
JIX55_RS07550	COG4948	Mandelate Racemase Muconate Lactonizing
JIX55_RS07555	COG2610	gluconate transmembrane transporter activity
JIX55_RS07560	COG1414	Transcriptional regulator
JIX55_RS07575	COG1120	ATPase activity
JIX55_RS07585	COG2197	response regulator
JIX55_RS07590	COG4585	Histidine kinase
JIX55_RS07625	COG1132	(ABC) transporter
JIX55_RS07665	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JIX55_RS07685	COG0803	Belongs to the bacterial solute-binding protein 9 family
JIX55_RS07695	COG1121	(ABC) transporter
JIX55_RS07700	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JIX55_RS07720	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JIX55_RS07725	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JIX55_RS07790	COG0395	ABC-type sugar transport system, permease component
JIX55_RS07795	COG1175	transmembrane transport
JIX55_RS07800	COG1653	transport
JIX55_RS07805	COG0366	Alpha amylase catalytic
JIX55_RS07820	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS07825	COG4821	SIS domain
JIX55_RS07830	COG2188	Transcriptional regulator
JIX55_RS07850	COG2072	flavoprotein involved in K transport
JIX55_RS07865	COG0432	Pfam Uncharacterised protein family UPF0047
JIX55_RS07870	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JIX55_RS07875	COG1116	anion transmembrane transporter activity
JIX55_RS07885	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS07890	COG2072	flavoprotein involved in K transport
JIX55_RS07900	COG1132	(ABC) transporter
JIX55_RS07910	COG1301	dicarboxylic acid transport
JIX55_RS07930	COG1132	(ABC) transporter
JIX55_RS07950	COG1946	Acyl-CoA thioesterase
JIX55_RS07960	COG2018	Roadblock/LC7 domain
JIX55_RS08015	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JIX55_RS08040	COG1940	carbohydrate kinase activity
JIX55_RS08055	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS08075	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS08080	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS08095	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS08125	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS08135	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JIX55_RS08205	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS08210	COG1129	ABC transporter
JIX55_RS08225	COG3525	Glycosyl hydrolase, family 20, catalytic domain
JIX55_RS08225	COG3291	Pkd domain containing protein
JIX55_RS08230	COG4821	SIS domain
JIX55_RS08235	COG1737	Transcriptional regulator
JIX55_RS08255	COG1175	transmembrane transport
JIX55_RS08260	COG0395	ABC-type sugar transport system, permease component
JIX55_RS08265	COG1472	Belongs to the glycosyl hydrolase 3 family
JIX55_RS08275	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JIX55_RS08285	COG3387	PFAM Glycoside hydrolase 15-related
JIX55_RS08325	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JIX55_RS08330	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JIX55_RS08335	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JIX55_RS08365	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JIX55_RS08375	COG1472	Belongs to the glycosyl hydrolase 3 family
JIX55_RS08400	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS08425	COG1414	Transcriptional regulator
JIX55_RS08435	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS08440	COG2814	Major facilitator Superfamily
JIX55_RS08445	COG1454	alcohol dehydrogenase
JIX55_RS08450	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS08490	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JIX55_RS08495	COG2218	PFAM glutamate synthase alpha subunit domain protein
JIX55_RS08500	COG0069	glutamate synthase activity
JIX55_RS08510	COG1396	sequence-specific DNA binding
JIX55_RS08515	COG2755	lipolytic protein G-D-S-L family
JIX55_RS08525	COG2366	antibiotic biosynthetic process
JIX55_RS08535	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JIX55_RS08540	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS08545	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS08545	COG3321	synthase
JIX55_RS08590	COG3866	Pectate lyase
JIX55_RS08620	COG0395	ABC-type sugar transport system, permease component
JIX55_RS08625	COG1175	transmembrane transport
JIX55_RS08635	COG1609	Transcriptional regulator
JIX55_RS08640	COG1846	Transcriptional regulator
JIX55_RS08690	COG0642	Histidine kinase
JIX55_RS08730	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS08735	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS08750	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS08750	COG3118	belongs to the thioredoxin family
JIX55_RS08755	COG1793	dna ligase
JIX55_RS08765	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS08775	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS08785	COG0242	peptide deformylase activity
JIX55_RS08795	COG3442	glutamine amidotransferase
JIX55_RS08800	COG0205	6-phosphofructokinase activity
JIX55_RS08815	COG2815	serine threonine protein kinase
JIX55_RS08815	COG0515	serine threonine protein kinase
JIX55_RS08825	COG3275	phosphorelay sensor kinase activity
JIX55_RS08830	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JIX55_RS08840	COG3279	Response regulator of the LytR AlgR family
JIX55_RS08850	COG1834	amidinotransferase
JIX55_RS08855	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JIX55_RS08860	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JIX55_RS08865	COG1126	abc transporter atp-binding protein
JIX55_RS08870	COG0765	amino acid transport
JIX55_RS08875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JIX55_RS08880	COG3835	regulator
JIX55_RS08890	COG3833	ABC-type maltose transport systems, permease component
JIX55_RS08900	COG2182	Extracellular solute-binding protein
JIX55_RS08925	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JIX55_RS08935	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JIX55_RS08940	COG1760	l-serine dehydratase
JIX55_RS08995	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JIX55_RS09010	COG4176	ABC-type proline glycine betaine transport system permease component
JIX55_RS09015	COG4175	Glycine betaine
JIX55_RS09015	COG0517	IMP dehydrogenase activity
JIX55_RS09020	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS09035	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
JIX55_RS09045	COG4638	Rieske (2fe-2S)
JIX55_RS09050	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JIX55_RS09085	COG0829	nickel cation binding
JIX55_RS09090	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JIX55_RS09100	COG0804	urea catabolic process
JIX55_RS09105	COG0832	Belongs to the urease beta subunit family
JIX55_RS09110	COG0831	urea catabolic process
JIX55_RS09125	COG0740	serine-type endopeptidase activity
JIX55_RS09135	COG1388	LysM domain
JIX55_RS09135	COG0791	NLP P60 protein
JIX55_RS09165	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JIX55_RS09170	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JIX55_RS09175	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JIX55_RS09185	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JIX55_RS09205	COG1136	(ABC) transporter
JIX55_RS09205	COG0577	efflux transmembrane transporter activity
JIX55_RS09210	COG0577	efflux transmembrane transporter activity
JIX55_RS09210	COG1136	(ABC) transporter
JIX55_RS09255	COG2226	methyltransferase
JIX55_RS09265	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JIX55_RS09270	COG3663	DNA glycosylase
JIX55_RS09290	COG4585	Histidine kinase
JIX55_RS09295	COG2197	response regulator
JIX55_RS09300	COG1940	carbohydrate kinase activity
JIX55_RS09305	COG2188	Transcriptional regulator
JIX55_RS09310	COG1595	DNA-templated transcription, initiation
JIX55_RS09315	COG2267	carboxylic ester hydrolase activity
JIX55_RS09335	COG0626	cystathionine gamma-synthase activity
JIX55_RS09360	COG1522	sequence-specific DNA binding
JIX55_RS09365	COG0419	ATPase involved in DNA repair
JIX55_RS09370	COG0420	3'-5' exonuclease activity
JIX55_RS09375	COG1739	Uncharacterized protein family UPF0029
JIX55_RS09390	COG1832	CoA-binding protein
JIX55_RS09430	COG0559	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS09455	COG0542	response to heat
JIX55_RS09480	COG0110	maltose O-acetyltransferase activity
JIX55_RS09525	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JIX55_RS09560	COG1968	undecaprenyl-diphosphatase activity
JIX55_RS09575	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS09585	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS09600	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JIX55_RS09610	COG2318	DinB family
JIX55_RS09625	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JIX55_RS09630	COG0747	negative chemotaxis
JIX55_RS09675	COG0697	spore germination
JIX55_RS09710	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS09715	COG0384	phenazine biosynthesis protein PhzF
JIX55_RS09740	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JIX55_RS09740	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JIX55_RS09750	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JIX55_RS09770	COG1716	ATPase activity
JIX55_RS09790	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JIX55_RS09820	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JIX55_RS09830	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JIX55_RS09855	COG3706	GGDEF domain
JIX55_RS09860	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JIX55_RS09865	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JIX55_RS09885	COG2018	Roadblock/LC7 domain
JIX55_RS09930	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS09965	COG2814	Major facilitator Superfamily
JIX55_RS09970	COG4336	lyase activity
JIX55_RS09975	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JIX55_RS09980	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JIX55_RS09985	COG1984	allophanate hydrolase subunit 2
JIX55_RS09990	COG2755	lipolytic protein G-D-S-L family
JIX55_RS09995	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS10025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JIX55_RS10030	COG2364	Membrane
JIX55_RS10040	COG2270	Major facilitator Superfamily
JIX55_RS10055	COG0463	Glycosyl transferase, family 2
JIX55_RS10080	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS10130	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JIX55_RS10135	COG0140	phosphoribosyl-ATP diphosphatase activity
JIX55_RS10140	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JIX55_RS10145	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JIX55_RS10145	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JIX55_RS10150	COG3201	nicotinamide mononucleotide transporter
JIX55_RS10165	COG1846	Transcriptional regulator
JIX55_RS10165	COG1940	carbohydrate kinase activity
JIX55_RS10170	COG2223	nitrite transmembrane transporter activity
JIX55_RS10195	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JIX55_RS10210	COG3842	ATPase activity
JIX55_RS10230	COG2188	Transcriptional regulator
JIX55_RS10240	COG0531	amino acid
JIX55_RS10255	COG2390	Transcriptional regulator
JIX55_RS10260	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JIX55_RS10265	COG2409	Drug exporters of the RND superfamily
JIX55_RS10275	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JIX55_RS10290	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JIX55_RS10300	COG1758	RNA polymerase activity
JIX55_RS10305	COG0194	GDP metabolic process
JIX55_RS10315	COG0284	orotidine-5'-phosphate decarboxylase activity
JIX55_RS10320	COG0167	dihydroorotate dehydrogenase activity
JIX55_RS10325	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JIX55_RS10330	COG0505	Belongs to the CarA family
JIX55_RS10340	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JIX55_RS10345	COG0540	Belongs to the ATCase OTCase family
JIX55_RS10350	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
JIX55_RS10360	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JIX55_RS10365	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JIX55_RS10370	COG0006	proline dipeptidase activity
JIX55_RS10380	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JIX55_RS10385	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JIX55_RS10390	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JIX55_RS10400	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JIX55_RS10405	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JIX55_RS10410	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JIX55_RS10415	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JIX55_RS10430	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JIX55_RS10445	COG0124	histidyl-tRNA synthetase
JIX55_RS10455	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JIX55_RS10460	COG1196	nuclear chromosome segregation
JIX55_RS10465	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JIX55_RS10475	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JIX55_RS10480	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JIX55_RS10485	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JIX55_RS10495	COG2255	four-way junction helicase activity
JIX55_RS10500	COG0632	four-way junction helicase activity
JIX55_RS10505	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JIX55_RS10510	COG0217	transcriptional regulatory protein
JIX55_RS10515	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
JIX55_RS10520	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
JIX55_RS10530	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS10535	COG1560	Kdo2-lipid A biosynthetic process
JIX55_RS10540	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JIX55_RS10560	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JIX55_RS10575	COG5002	protein histidine kinase activity
JIX55_RS10575	COG2176	DNA-directed DNA polymerase activity
JIX55_RS10605	COG0395	ABC-type sugar transport system, permease component
JIX55_RS10610	COG1175	transmembrane transport
JIX55_RS10665	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JIX55_RS10665	COG0512	Glutamine amidotransferase of anthranilate synthase
JIX55_RS10725	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JIX55_RS10725	COG1648	precorrin-2 dehydrogenase activity
JIX55_RS10730	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
JIX55_RS10745	COG1464	Belongs to the NlpA lipoprotein family
JIX55_RS10750	COG2011	ABC-type metal ion transport system permease component
JIX55_RS10755	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JIX55_RS10780	COG0584	glycerophosphoryl diester phosphodiesterase
JIX55_RS10785	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS10785	COG0204	Acyl-transferase
JIX55_RS10790	COG0477	Major facilitator Superfamily
JIX55_RS10805	COG0165	Argininosuccinate lyase
JIX55_RS10810	COG0137	argininosuccinate synthase activity
JIX55_RS10840	COG1438	arginine binding
JIX55_RS10845	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JIX55_RS10850	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JIX55_RS10855	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
JIX55_RS10860	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JIX55_RS10905	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JIX55_RS10910	COG0697	spore germination
JIX55_RS10920	COG1649	PFAM Uncharacterised BCR, COG1649
JIX55_RS10945	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JIX55_RS10945	COG0072	phenylalanine-tRNA ligase activity
JIX55_RS10950	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JIX55_RS10955	COG5002	protein histidine kinase activity
JIX55_RS10965	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JIX55_RS10970	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JIX55_RS10975	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JIX55_RS10980	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JIX55_RS11025	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS11030	COG0174	glutamine synthetase
JIX55_RS11040	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JIX55_RS11070	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JIX55_RS11095	COG2124	cytochrome p450
JIX55_RS11110	COG0564	pseudouridine synthase activity
JIX55_RS11170	COG0805	protein transport
JIX55_RS11175	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JIX55_RS11210	COG0638	Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
JIX55_RS11220	COG1609	Transcriptional regulator
JIX55_RS11225	COG0638	Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
JIX55_RS11230	COG0638	Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side-chain amino group of a substrate lysine
JIX55_RS11245	COG4122	O-methyltransferase activity
JIX55_RS11250	COG1222	aaa ATPase
JIX55_RS11270	COG0517	IMP dehydrogenase activity
JIX55_RS11270	COG1994	Peptidase M50
JIX55_RS11280	COG2197	response regulator
JIX55_RS11285	COG4166	transmembrane transport
JIX55_RS11290	COG0747	negative chemotaxis
JIX55_RS11300	COG1410	methionine synthase
JIX55_RS11300	COG0646	methionine synthase
JIX55_RS11305	COG1414	Transcriptional regulator
JIX55_RS11310	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JIX55_RS11315	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JIX55_RS11320	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JIX55_RS11340	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS11345	COG2186	Transcriptional regulator
JIX55_RS11360	COG0215	cysteine-tRNA ligase activity
JIX55_RS11375	COG0588	phosphoglycerate mutase activity
JIX55_RS11380	COG0598	Magnesium transport protein CorA
JIX55_RS11390	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS11395	COG0667	Aldo Keto reductase
JIX55_RS11435	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JIX55_RS11445	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS11450	COG0308	aminopeptidase N
JIX55_RS11455	COG3012	SEC-C Motif Domain Protein
JIX55_RS11460	COG2186	Transcriptional regulator
JIX55_RS11465	COG3265	gluconokinase activity
JIX55_RS11480	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JIX55_RS11485	COG3573	Dehydrogenase
JIX55_RS11490	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JIX55_RS11495	COG2149	membrane
JIX55_RS11530	COG3876	Protein conserved in bacteria
JIX55_RS11590	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS11635	COG2851	Citrate transporter
JIX55_RS11640	COG0243	molybdopterin cofactor binding
JIX55_RS11645	COG1309	transcriptional regulator
JIX55_RS11650	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JIX55_RS11655	COG2188	Transcriptional regulator
JIX55_RS11680	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS11695	COG1595	DNA-templated transcription, initiation
JIX55_RS11715	COG2815	serine threonine protein kinase
JIX55_RS11715	COG0515	serine threonine protein kinase
JIX55_RS11720	COG2755	lipolytic protein G-D-S-L family
JIX55_RS11750	COG0726	polysaccharide deacetylase
JIX55_RS11775	COG1725	Transcriptional regulator
JIX55_RS11820	COG0662	Cupin 2, conserved barrel domain protein
JIX55_RS11820	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JIX55_RS11825	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JIX55_RS11830	COG0587	DNA-directed DNA polymerase activity
JIX55_RS11855	COG1799	cell septum assembly
JIX55_RS11860	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS11865	COG0477	Major facilitator Superfamily
JIX55_RS11875	COG0671	phosphoesterase, PA-phosphatase related
JIX55_RS11885	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JIX55_RS11900	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS11920	COG1129	ABC transporter
JIX55_RS11930	COG3583	domain protein
JIX55_RS11945	COG1160	GTP binding
JIX55_RS11955	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JIX55_RS11995	COG3541	Predicted nucleotidyltransferase
JIX55_RS12005	COG0494	nUDIX hydrolase
JIX55_RS12010	COG1187	pseudouridine synthase activity
JIX55_RS12015	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JIX55_RS12020	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JIX55_RS12035	COG0686	Belongs to the AlaDH PNT family
JIX55_RS12045	COG0494	nUDIX hydrolase
JIX55_RS12050	COG0504	CTP synthase activity
JIX55_RS12055	COG3387	PFAM Glycoside hydrolase 15-related
JIX55_RS12075	COG0497	DNA recombination
JIX55_RS12080	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JIX55_RS12100	COG1120	ATPase activity
JIX55_RS12105	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS12110	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS12115	COG0647	UMP catabolic process
JIX55_RS12145	COG2094	Belongs to the DNA glycosylase MPG family
JIX55_RS12155	COG1881	PFAM PEBP family protein
JIX55_RS12175	COG1119	ATPase activity
JIX55_RS12195	COG2197	response regulator
JIX55_RS12200	COG4585	Histidine kinase
JIX55_RS12205	COG4221	oxidoreductase activity
JIX55_RS12210	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JIX55_RS12220	COG0842	Transport permease protein
JIX55_RS12220	COG1716	ATPase activity
JIX55_RS12220	COG1131	(ABC) transporter
JIX55_RS12230	COG3830	Belongs to the UPF0237 family
JIX55_RS12230	COG0560	Phosphoserine phosphatase
JIX55_RS12235	COG0588	phosphoglycerate mutase activity
JIX55_RS12255	COG2186	Transcriptional regulator
JIX55_RS12270	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS12275	COG0653	protein targeting
JIX55_RS12290	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JIX55_RS12310	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JIX55_RS12315	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JIX55_RS12335	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS12360	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JIX55_RS12385	COG1966	Carbon starvation protein
JIX55_RS12460	COG0488	(ABC) transporter
JIX55_RS12485	COG0235	Class ii aldolase
JIX55_RS12510	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
JIX55_RS12515	COG1492	cobalamin metabolic process
JIX55_RS12535	COG1797	cobyrinic acid a,c-diamide synthase activity
JIX55_RS12555	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
JIX55_RS12570	COG1609	Transcriptional regulator
JIX55_RS12580	COG0395	ABC-type sugar transport system, permease component
JIX55_RS12585	COG4209	transmembrane transport
JIX55_RS12610	COG0765	amino acid transport
JIX55_RS12620	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JIX55_RS12625	COG0456	acetyltransferase
JIX55_RS12630	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JIX55_RS12635	COG1917	Cupin 2, conserved barrel domain protein
JIX55_RS12640	COG5285	phytanoyl-CoA dioxygenase
JIX55_RS12650	COG1595	DNA-templated transcription, initiation
JIX55_RS12680	COG1414	Transcriptional regulator
JIX55_RS12690	COG2252	PERMEase
JIX55_RS12695	COG1595	DNA-templated transcription, initiation
JIX55_RS12725	COG2018	Roadblock/LC7 domain
JIX55_RS12740	COG4733	cellulase activity
JIX55_RS12760	COG1073	alpha beta
JIX55_RS12765	COG4677	pectinesterase activity
JIX55_RS12770	COG4677	pectinesterase activity
JIX55_RS12780	COG2755	lipolytic protein G-D-S-L family
JIX55_RS12790	COG4677	pectinesterase activity
JIX55_RS12795	COG3507	Belongs to the glycosyl hydrolase 43 family
JIX55_RS12810	COG3866	Pectate lyase
JIX55_RS12815	COG0395	ABC-type sugar transport system, permease component
JIX55_RS12820	COG1175	transmembrane transport
JIX55_RS12830	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS12835	COG1802	Transcriptional regulator
JIX55_RS12875	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS12880	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JIX55_RS12885	COG1349	DNA-binding transcription factor activity
JIX55_RS12900	COG1802	Transcriptional regulator
JIX55_RS12940	COG1295	ribonuclease BN
JIX55_RS12940	COG1959	2 iron, 2 sulfur cluster binding
JIX55_RS12955	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS12965	COG1595	DNA-templated transcription, initiation
JIX55_RS12975	COG2171	N-acyltransferase activity
JIX55_RS12980	COG3226	Transcriptional regulator
JIX55_RS12985	COG2076	Multidrug Resistance protein
JIX55_RS12995	COG2151	metal-sulfur cluster biosynthetic enzyme
JIX55_RS13000	COG0822	iron-sulfur transferase activity
JIX55_RS13005	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JIX55_RS13010	COG0396	ATPase activity
JIX55_RS13020	COG0719	Fe-S assembly protein
JIX55_RS13035	COG2746	aminoglycoside 3-N-acetyltransferase activity
JIX55_RS13050	COG1612	heme a metabolic process
JIX55_RS13070	COG0109	protoheme IX farnesyltransferase activity
JIX55_RS13075	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JIX55_RS13080	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JIX55_RS13095	COG0363	glucosamine-6-phosphate deaminase activity
JIX55_RS13100	COG0477	Major facilitator Superfamily
JIX55_RS13115	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS13120	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JIX55_RS13130	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JIX55_RS13140	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS13160	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JIX55_RS13170	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS13175	COG0166	Belongs to the GPI family
JIX55_RS13195	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JIX55_RS13200	COG0149	triose-phosphate isomerase activity
JIX55_RS13205	COG0126	phosphoglycerate kinase activity
JIX55_RS13210	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JIX55_RS13220	COG1481	regulation of sporulation
JIX55_RS13225	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JIX55_RS13230	COG1660	Displays ATPase and GTPase activities
JIX55_RS13235	COG0322	excinuclease ABC activity
JIX55_RS13240	COG2197	response regulator
JIX55_RS13245	COG4585	Histidine kinase
JIX55_RS13260	COG2197	response regulator
JIX55_RS13285	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JIX55_RS13335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JIX55_RS13340	COG0765	amino acid transport
JIX55_RS13350	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JIX55_RS13355	COG1619	proteins homologs of microcin C7 resistance protein MccF
JIX55_RS13360	COG0477	Major facilitator Superfamily
JIX55_RS13365	COG0387	Pfam Sodium calcium exchanger
JIX55_RS13385	COG0556	nucleotide-excision repair
JIX55_RS13395	COG0584	glycerophosphoryl diester phosphodiesterase
JIX55_RS13400	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JIX55_RS13410	COG2313	pseudouridylate synthase activity
JIX55_RS13420	COG2226	methyltransferase
JIX55_RS13425	COG0598	Magnesium transport protein CorA
JIX55_RS13455	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JIX55_RS13460	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JIX55_RS13465	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS13465	COG3848	Pyruvate phosphate dikinase
JIX55_RS13505	COG1132	(ABC) transporter
JIX55_RS13515	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS13555	COG1953	Uracil, thiamine, allantoin
JIX55_RS13560	COG1802	Transcriptional regulator
JIX55_RS13570	COG2267	carboxylic ester hydrolase activity
JIX55_RS13590	COG2226	methyltransferase
JIX55_RS13610	COG0237	dephospho-CoA kinase activity
JIX55_RS13625	COG0539	negative regulation of cytoplasmic translation
JIX55_RS13630	COG2226	methyltransferase
JIX55_RS13635	COG1643	Atp-dependent helicase
JIX55_RS13670	COG2050	protein possibly involved in aromatic compounds catabolism
JIX55_RS13700	COG0411	ABC transporter
JIX55_RS13735	COG0737	Belongs to the 5'-nucleotidase family
JIX55_RS13765	COG1605	Chorismate mutase
JIX55_RS13765	COG0287	Prephenate dehydrogenase
JIX55_RS13775	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS13785	COG1024	Enoyl-CoA hydratase
JIX55_RS13805	COG0183	Belongs to the thiolase family
JIX55_RS13810	COG1309	transcriptional regulator
JIX55_RS13815	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS13820	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS13825	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS13830	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JIX55_RS13835	COG2304	oxidoreductase activity
JIX55_RS13850	COG0067	glutamate synthase
JIX55_RS13850	COG0069	glutamate synthase activity
JIX55_RS13850	COG0070	glutamate synthase
JIX55_RS13860	COG1397	ADP-ribosylglycohydrolase
JIX55_RS13880	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS13885	COG2301	Belongs to the HpcH HpaI aldolase family
JIX55_RS13890	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JIX55_RS13900	COG0159	tryptophan synthase activity
JIX55_RS13905	COG0133	tryptophan synthase activity
JIX55_RS13910	COG0134	indole-3-glycerol-phosphate synthase activity
JIX55_RS13930	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JIX55_RS13935	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JIX55_RS13950	COG0107	imidazoleglycerol-phosphate synthase activity
JIX55_RS13955	COG0251	oxidation-reduction process
JIX55_RS13960	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JIX55_RS13965	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JIX55_RS13975	COG0131	Imidazoleglycerol-phosphate dehydratase
JIX55_RS13980	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JIX55_RS13985	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JIX55_RS14005	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JIX55_RS14025	COG1432	Conserved Protein
JIX55_RS14035	COG0587	DNA-directed DNA polymerase activity
JIX55_RS14085	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JIX55_RS14095	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JIX55_RS14100	COG3599	regulation of cell shape
JIX55_RS14110	COG1799	cell septum assembly
JIX55_RS14120	COG1496	oxidoreductase activity
JIX55_RS14125	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JIX55_RS14130	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JIX55_RS14135	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JIX55_RS14145	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JIX55_RS14150	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JIX55_RS14160	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JIX55_RS14175	COG0275	rRNA processing
JIX55_RS14185	COG0714	Associated with various cellular activities
JIX55_RS14205	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JIX55_RS14215	COG1121	(ABC) transporter
JIX55_RS14225	COG1309	transcriptional regulator
JIX55_RS14245	COG0352	thiamine-phosphate diphosphorylase activity
JIX55_RS14265	COG2022	thiamine diphosphate biosynthetic process
JIX55_RS14265	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JIX55_RS14275	COG2022	thiamine diphosphate biosynthetic process
JIX55_RS14280	COG2815	serine threonine protein kinase
JIX55_RS14280	COG0515	serine threonine protein kinase
JIX55_RS14285	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JIX55_RS14295	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JIX55_RS14300	COG2193	ferroxidase activity
JIX55_RS14305	COG0243	molybdopterin cofactor binding
JIX55_RS14310	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
JIX55_RS14320	COG0205	6-phosphofructokinase activity
JIX55_RS14330	COG4585	Histidine kinase
JIX55_RS14350	COG1595	DNA-templated transcription, initiation
JIX55_RS14365	COG1940	carbohydrate kinase activity
JIX55_RS14375	COG0003	Pfam Anion-transporting ATPase
JIX55_RS14410	COG0534	Mate efflux family protein
JIX55_RS14460	COG2205	protein histidine kinase activity
JIX55_RS14465	COG0745	RESPONSE REGULATOR receiver
JIX55_RS14475	COG1929	Belongs to the glycerate kinase type-1 family
JIX55_RS14485	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JIX55_RS14490	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JIX55_RS14495	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JIX55_RS14500	COG0723	plastoquinol--plastocyanin reductase activity
JIX55_RS14505	COG2010	Cytochrome c
JIX55_RS14510	COG1845	cytochrome c oxidase, subunit III
JIX55_RS14520	COG1376	ErfK ybiS ycfS ynhG family protein
JIX55_RS14530	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JIX55_RS14535	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JIX55_RS14545	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JIX55_RS14565	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JIX55_RS14570	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JIX55_RS14575	COG2197	response regulator
JIX55_RS14580	COG4585	Histidine kinase
JIX55_RS14620	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
JIX55_RS14635	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
JIX55_RS14665	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JIX55_RS14670	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JIX55_RS14675	COG0508	dehydrogenase complex catalyzes the overall conversion of
JIX55_RS14700	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JIX55_RS14725	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JIX55_RS14750	COG0321	lipoyl(octanoyl) transferase activity
JIX55_RS14755	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JIX55_RS14775	COG0174	glutamine synthetase
JIX55_RS14785	COG0501	Belongs to the peptidase M48B family
JIX55_RS14835	COG0745	RESPONSE REGULATOR receiver
JIX55_RS14865	COG1309	transcriptional regulator
JIX55_RS14890	COG0667	Aldo Keto reductase
JIX55_RS14920	COG0366	Alpha amylase catalytic
JIX55_RS14925	COG3833	ABC-type maltose transport systems, permease component
JIX55_RS14930	COG1175	transmembrane transport
JIX55_RS14940	COG1609	Transcriptional regulator
JIX55_RS14950	COG0583	DNA-binding transcription factor activity
JIX55_RS14960	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JIX55_RS14980	COG0174	glutamine synthetase
JIX55_RS14995	COG1959	2 iron, 2 sulfur cluster binding
JIX55_RS15010	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JIX55_RS15010	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JIX55_RS15015	COG2814	Major facilitator Superfamily
JIX55_RS15025	COG1309	transcriptional regulator
JIX55_RS15030	COG0477	Major facilitator Superfamily
JIX55_RS15035	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JIX55_RS15055	COG1994	Peptidase M50
JIX55_RS15100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS15105	COG1120	ATPase activity
JIX55_RS15110	COG2822	iron ion transport
JIX55_RS15115	COG2837	iron assimilation
JIX55_RS15120	COG0672	)-iron permease
JIX55_RS15170	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS15175	COG2814	Major facilitator Superfamily
JIX55_RS15185	COG3540	Alkaline phosphatase
JIX55_RS15190	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS15195	COG0667	Aldo Keto reductase
JIX55_RS15205	COG2259	Doxx family
JIX55_RS15220	COG2409	Drug exporters of the RND superfamily
JIX55_RS15225	COG4585	Histidine kinase
JIX55_RS15230	COG2197	response regulator
JIX55_RS15235	COG3940	Belongs to the glycosyl hydrolase 43 family
JIX55_RS15240	COG3940	Belongs to the glycosyl hydrolase 43 family
JIX55_RS15275	COG4585	Histidine kinase
JIX55_RS15280	COG2197	response regulator
JIX55_RS15350	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JIX55_RS15435	COG3022	response to hydroperoxide
JIX55_RS15440	COG0800	Aldolase
JIX55_RS15455	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JIX55_RS15470	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS15480	COG2030	dehydratase
JIX55_RS15485	COG4585	Histidine kinase
JIX55_RS15490	COG2197	response regulator
JIX55_RS15515	COG0860	N-Acetylmuramoyl-L-alanine amidase
JIX55_RS15530	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS15550	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS15555	COG1309	transcriptional regulator
JIX55_RS15650	COG2319	Wd-40 repeat
JIX55_RS15650	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS15660	COG0183	Belongs to the thiolase family
JIX55_RS15665	COG2124	cytochrome p450
JIX55_RS15680	COG4122	O-methyltransferase activity
JIX55_RS15730	COG1733	regulation of RNA biosynthetic process
JIX55_RS15765	COG2259	Doxx family
JIX55_RS15780	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JIX55_RS15785	COG0583	DNA-binding transcription factor activity
JIX55_RS15830	COG2197	response regulator
JIX55_RS16135	COG3620	sequence-specific DNA binding
JIX55_RS16180	COG0586	Pfam SNARE associated Golgi protein
JIX55_RS16190	COG1358	cellular component organization or biogenesis
JIX55_RS16235	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JIX55_RS16240	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JIX55_RS16250	COG0477	Major facilitator Superfamily
JIX55_RS16255	COG1309	transcriptional regulator
JIX55_RS16270	COG0667	Aldo Keto reductase
JIX55_RS16275	COG0789	Transcriptional regulator
JIX55_RS16310	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JIX55_RS16315	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JIX55_RS16320	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JIX55_RS16345	COG1309	transcriptional regulator
JIX55_RS16400	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS16405	COG2130	NADP-dependent
JIX55_RS16420	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS16445	COG1132	(ABC) transporter
JIX55_RS16470	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JIX55_RS16480	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS16485	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS16495	COG1879	ABC-type sugar transport system periplasmic component
JIX55_RS16500	COG1609	Transcriptional regulator
JIX55_RS16530	COG4214	carbohydrate transport
JIX55_RS16540	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JIX55_RS16575	COG0730	response to heat
JIX55_RS16605	COG3386	PFAM SMP-30 Gluconolaconase
JIX55_RS16610	COG1414	Transcriptional regulator
JIX55_RS16640	COG4981	capsule polysaccharide biosynthetic process
JIX55_RS16650	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JIX55_RS16700	COG2186	Transcriptional regulator
JIX55_RS16710	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS16715	COG0825	malonyl-CoA metabolic process
JIX55_RS16715	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JIX55_RS16740	COG1077	Cell shape determining protein MreB Mrl
JIX55_RS16775	COG3903	Transcriptional regulator
JIX55_RS16775	COG3629	intracellular signal transduction
JIX55_RS16785	COG1053	succinate dehydrogenase
JIX55_RS16800	COG0583	DNA-binding transcription factor activity
JIX55_RS16820	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JIX55_RS16850	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JIX55_RS16890	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS16895	COG0765	amino acid transport
JIX55_RS16900	COG0765	amino acid transport
JIX55_RS16910	COG1126	abc transporter atp-binding protein
JIX55_RS16915	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JIX55_RS16920	COG2186	Transcriptional regulator
JIX55_RS16935	COG1846	Transcriptional regulator
JIX55_RS16960	COG2197	response regulator
JIX55_RS16965	COG4585	Histidine kinase
JIX55_RS17000	COG0477	Major facilitator Superfamily
JIX55_RS17015	COG0596	Alpha beta hydrolase
JIX55_RS17020	COG0300	oxidoreductase activity
JIX55_RS17035	COG2197	response regulator
JIX55_RS17040	COG2226	methyltransferase
JIX55_RS17045	COG1024	Enoyl-CoA hydratase
JIX55_RS17045	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS17065	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS17070	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS17075	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS17130	COG0395	ABC-type sugar transport system, permease component
JIX55_RS17140	COG1653	transport
JIX55_RS17150	COG1309	transcriptional regulator
JIX55_RS17165	COG1113	amino acid transport
JIX55_RS17180	COG0559	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS17215	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JIX55_RS17265	COG2267	carboxylic ester hydrolase activity
JIX55_RS17305	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JIX55_RS17310	COG0573	inorganic phosphate transmembrane transporter activity
JIX55_RS17320	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JIX55_RS17365	COG2197	response regulator
JIX55_RS17370	COG4585	Histidine kinase
JIX55_RS17415	COG0076	glutamate decarboxylase activity
JIX55_RS17440	COG1070	Carbohydrate kinase
JIX55_RS17455	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JIX55_RS17460	COG0358	DNA primase activity
JIX55_RS17470	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JIX55_RS17480	COG2949	membrane
JIX55_RS17490	COG0243	molybdopterin cofactor binding
JIX55_RS17525	COG0701	Predicted permease
JIX55_RS17565	COG2146	nitrite reductase [NAD(P)H] activity
JIX55_RS17565	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JIX55_RS17570	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JIX55_RS17570	COG2146	nitrite reductase [NAD(P)H] activity
JIX55_RS17585	COG0640	Transcriptional regulator
JIX55_RS17590	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS17600	COG0659	secondary active sulfate transmembrane transporter activity
JIX55_RS17620	COG0642	Histidine kinase
JIX55_RS17640	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS17640	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JIX55_RS17645	COG1940	carbohydrate kinase activity
JIX55_RS17645	COG1846	Transcriptional regulator
JIX55_RS17650	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
JIX55_RS17680	COG0477	Major facilitator Superfamily
JIX55_RS17715	COG0423	glycine-tRNA ligase activity
JIX55_RS17720	COG0803	Belongs to the bacterial solute-binding protein 9 family
JIX55_RS17720	COG3443	Belongs to the bacterial solute-binding protein 9 family
JIX55_RS17725	COG1121	(ABC) transporter
JIX55_RS17730	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JIX55_RS17745	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JIX55_RS17750	COG1381	Involved in DNA repair and RecF pathway recombination
JIX55_RS17780	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
JIX55_RS17785	COG3903	Transcriptional regulator
JIX55_RS17785	COG3629	intracellular signal transduction
JIX55_RS17805	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JIX55_RS17815	COG2186	Transcriptional regulator
JIX55_RS17820	COG0747	negative chemotaxis
JIX55_RS17830	COG0444	Belongs to the ABC transporter superfamily
JIX55_RS17835	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS17865	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JIX55_RS17905	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JIX55_RS17930	COG2315	Protein conserved in bacteria
JIX55_RS17940	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JIX55_RS17950	COG1414	Transcriptional regulator
JIX55_RS17955	COG4948	Mandelate Racemase Muconate Lactonizing
JIX55_RS17960	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JIX55_RS17970	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JIX55_RS17975	COG1234	tRNA 3'-trailer cleavage
JIX55_RS17980	COG0537	adenosine 5'-monophosphoramidase activity
JIX55_RS17985	COG0793	Belongs to the peptidase S41A family
JIX55_RS17985	COG4946	Tricorn protease homolog
JIX55_RS18010	COG0484	heat shock protein binding
JIX55_RS18015	COG1420	regulation of RNA biosynthetic process
JIX55_RS18060	COG0481	GTPase activity
JIX55_RS18065	COG0268	Binds directly to 16S ribosomal RNA
JIX55_RS18090	COG1555	photosystem II stabilization
JIX55_RS18095	COG1307	EDD domain protein, DegV family
JIX55_RS18105	COG0495	leucyl-tRNA aminoacylation
JIX55_RS18115	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
JIX55_RS18145	COG0588	phosphoglycerate mutase activity
JIX55_RS18150	COG0799	negative regulation of ribosome biogenesis
JIX55_RS18160	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JIX55_RS18175	COG0501	Belongs to the peptidase M48B family
JIX55_RS18190	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JIX55_RS18200	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JIX55_RS18210	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JIX55_RS18215	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JIX55_RS18220	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JIX55_RS18230	COG1530	ribonuclease E activity
JIX55_RS18255	COG0772	Belongs to the SEDS family
JIX55_RS18260	COG0768	penicillin binding
JIX55_RS18275	COG1077	Cell shape determining protein MreB Mrl
JIX55_RS18280	COG0105	UTP biosynthetic process
JIX55_RS18290	COG0285	dihydrofolate synthase activity
JIX55_RS18295	COG0525	valine-tRNA ligase activity
JIX55_RS18305	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JIX55_RS18310	COG0740	serine-type endopeptidase activity
JIX55_RS18315	COG0740	serine-type endopeptidase activity
JIX55_RS18320	COG0544	peptidyl-prolyl cis-trans isomerase activity
JIX55_RS18340	COG3594	Acyltransferase
JIX55_RS18355	COG4552	Acetyltransferase involved in intracellular survival and related
JIX55_RS18370	COG1113	amino acid transport
JIX55_RS18375	COG0515	serine threonine protein kinase
JIX55_RS18410	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JIX55_RS18460	COG2337	Toxic component of a toxin-antitoxin (TA) module
JIX55_RS18475	COG0697	spore germination
JIX55_RS18480	COG1846	Transcriptional regulator
JIX55_RS18485	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS18515	COG1136	(ABC) transporter
JIX55_RS18525	COG0668	transmembrane transport
JIX55_RS18550	COG1175	transmembrane transport
JIX55_RS18555	COG0395	ABC-type sugar transport system, permease component
JIX55_RS18560	COG1486	melibiose metabolic process
JIX55_RS18605	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JIX55_RS18615	COG2084	Dehydrogenase
JIX55_RS18640	COG0629	single-stranded DNA binding
JIX55_RS18715	COG1609	Transcriptional regulator
JIX55_RS18730	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JIX55_RS18800	COG2304	oxidoreductase activity
JIX55_RS18820	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS18825	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JIX55_RS18835	COG0728	peptidoglycan biosynthetic process
JIX55_RS18845	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS18865	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JIX55_RS18870	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS18935	COG3962	Belongs to the TPP enzyme family
JIX55_RS18940	COG3718	enzyme involved in inositol metabolism
JIX55_RS18950	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JIX55_RS18970	COG2409	Drug exporters of the RND superfamily
JIX55_RS18995	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JIX55_RS19010	COG1129	ABC transporter
JIX55_RS19025	COG1869	D-ribose catabolic process
JIX55_RS19070	COG1674	ftsk spoiiie
JIX55_RS19085	COG1840	ABC-type Fe3 transport system, periplasmic component
JIX55_RS19095	COG3842	ATPase activity
JIX55_RS19160	COG0673	inositol 2-dehydrogenase activity
JIX55_RS19185	COG2890	protein-(glutamine-N5) methyltransferase activity
JIX55_RS19195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JIX55_RS19195	COG0723	plastoquinol--plastocyanin reductase activity
JIX55_RS19230	COG3340	Belongs to the peptidase S51 family
JIX55_RS19235	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JIX55_RS19245	COG1472	Belongs to the glycosyl hydrolase 3 family
JIX55_RS19255	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JIX55_RS19255	COG0515	serine threonine protein kinase
JIX55_RS19280	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS19300	COG2226	methyltransferase
JIX55_RS19345	COG3958	Transketolase
JIX55_RS19350	COG3959	Transketolase, thiamine diphosphate binding domain
JIX55_RS19355	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JIX55_RS19360	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JIX55_RS19375	COG0189	ligase activity
JIX55_RS19445	COG2356	endonuclease I
JIX55_RS19460	COG0028	Belongs to the TPP enzyme family
JIX55_RS19470	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JIX55_RS19485	COG1946	Acyl-CoA thioesterase
JIX55_RS19490	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS19495	COG1309	transcriptional regulator
JIX55_RS19500	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JIX55_RS19515	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS19565	COG0076	glutamate decarboxylase activity
JIX55_RS19570	COG3486	L-lysine 6-monooxygenase (NADPH) activity
JIX55_RS19600	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JIX55_RS19620	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JIX55_RS19650	COG0395	ABC-type sugar transport system, permease component
JIX55_RS19660	COG1487	ribonuclease activity
JIX55_RS19700	COG2197	response regulator
JIX55_RS19710	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JIX55_RS19715	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JIX55_RS19730	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JIX55_RS19755	COG1309	transcriptional regulator
JIX55_RS19775	COG3629	intracellular signal transduction
JIX55_RS19780	COG4770	biotin carboxylase activity
JIX55_RS19790	COG0667	Aldo Keto reductase
JIX55_RS19805	COG3345	alpha-galactosidase
JIX55_RS19810	COG0395	ABC-type sugar transport system, permease component
JIX55_RS19815	COG1175	transmembrane transport
JIX55_RS19820	COG1653	transport
JIX55_RS19825	COG3842	ATPase activity
JIX55_RS19840	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS19850	COG0745	RESPONSE REGULATOR receiver
JIX55_RS19860	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JIX55_RS19875	COG0406	alpha-ribazole phosphatase activity
JIX55_RS19925	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS19940	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JIX55_RS19990	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JIX55_RS19995	COG0765	amino acid transport
JIX55_RS20000	COG0765	amino acid transport
JIX55_RS20005	COG1126	abc transporter atp-binding protein
JIX55_RS20020	COG2197	response regulator
JIX55_RS20030	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS20040	COG3397	chitin binding
JIX55_RS20105	COG1595	DNA-templated transcription, initiation
JIX55_RS20110	COG1940	carbohydrate kinase activity
JIX55_RS20115	COG0673	inositol 2-dehydrogenase activity
JIX55_RS20120	COG4702	Belongs to the UPF0303 family
JIX55_RS20145	COG1404	Belongs to the peptidase S8 family
JIX55_RS20275	COG1607	acyl-coa hydrolase
JIX55_RS20280	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS20295	COG1917	Cupin 2, conserved barrel domain protein
JIX55_RS20305	COG5285	phytanoyl-CoA dioxygenase
JIX55_RS20315	COG2271	Major facilitator Superfamily
JIX55_RS20345	COG2733	membrane
JIX55_RS20360	COG4555	ABC transporter
JIX55_RS20380	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JIX55_RS20415	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JIX55_RS20425	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JIX55_RS20430	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JIX55_RS20440	COG1263	PTS System
JIX55_RS20445	COG1234	tRNA 3'-trailer cleavage
JIX55_RS20475	COG1113	amino acid transport
JIX55_RS20485	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JIX55_RS20495	COG1335	isochorismatase
JIX55_RS20530	COG0277	FAD linked oxidase domain protein
JIX55_RS20540	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JIX55_RS20550	COG1174	glycine betaine transport
JIX55_RS20560	COG1174	glycine betaine transport
JIX55_RS20570	COG3480	Lon protease (S16) C-terminal proteolytic domain
JIX55_RS20580	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JIX55_RS20580	COG0596	Alpha beta hydrolase
JIX55_RS20595	COG3654	unkown
JIX55_RS20620	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS20635	COG3525	Glycosyl hydrolase, family 20, catalytic domain
JIX55_RS20640	COG0395	ABC-type sugar transport system, permease component
JIX55_RS20645	COG1175	transmembrane transport
JIX55_RS20650	COG1653	transport
JIX55_RS20660	COG1678	Uncharacterized ACR, COG1678
JIX55_RS20665	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JIX55_RS20670	COG0776	regulation of translation
JIX55_RS20680	COG3973	AAA domain
JIX55_RS20705	COG2223	nitrite transmembrane transporter activity
JIX55_RS20820	COG0758	DNA mediated transformation
JIX55_RS20860	COG0583	DNA-binding transcription factor activity
JIX55_RS20875	COG1175	transmembrane transport
JIX55_RS20880	COG0395	ABC-type sugar transport system, permease component
JIX55_RS20885	COG1501	Belongs to the glycosyl hydrolase 31 family
JIX55_RS20900	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JIX55_RS20905	COG0793	Belongs to the peptidase S41A family
JIX55_RS20915	COG2884	Cell division ATP-binding protein ftsE
JIX55_RS20930	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JIX55_RS20935	COG0515	serine threonine protein kinase
JIX55_RS20940	COG0515	serine threonine protein kinase
JIX55_RS20950	COG1653	transport
JIX55_RS20955	COG1175	transmembrane transport
JIX55_RS20960	COG0395	ABC-type sugar transport system, permease component
JIX55_RS20965	COG0463	Glycosyl transferase, family 2
JIX55_RS20965	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JIX55_RS20975	COG1764	response to oxidative stress
JIX55_RS20980	COG1846	Transcriptional regulator
JIX55_RS20985	COG1215	transferase activity, transferring glycosyl groups
JIX55_RS21030	COG1134	teichoic acid transport
JIX55_RS21035	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS21040	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JIX55_RS21055	COG2902	Dehydrogenase
JIX55_RS21080	COG0653	protein targeting
JIX55_RS21090	COG3214	Protein conserved in bacteria
JIX55_RS21095	COG2197	response regulator
JIX55_RS21100	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JIX55_RS21110	COG0823	Involved in the tonB-independent uptake of proteins
JIX55_RS21115	COG5000	phosphorelay sensor kinase activity
JIX55_RS21115	COG5002	protein histidine kinase activity
JIX55_RS21120	COG0745	RESPONSE REGULATOR receiver
JIX55_RS21125	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
JIX55_RS21145	COG0714	Associated with various cellular activities
JIX55_RS21185	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
JIX55_RS21195	COG1482	cell wall glycoprotein biosynthetic process
JIX55_RS21205	COG2835	tetraacyldisaccharide 4'-kinase activity
JIX55_RS21215	COG1620	l-lactate permease
JIX55_RS21250	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JIX55_RS21255	COG1478	Catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives
JIX55_RS21255	COG0778	Nitroreductase
JIX55_RS21265	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JIX55_RS21285	COG1316	TRANSCRIPTIONal
JIX55_RS21295	COG0463	Glycosyl transferase, family 2
JIX55_RS21305	COG1316	TRANSCRIPTIONal
JIX55_RS21320	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JIX55_RS21345	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JIX55_RS21360	COG2205	protein histidine kinase activity
JIX55_RS21365	COG0745	RESPONSE REGULATOR receiver
JIX55_RS21390	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS21395	COG1191	sigma factor activity
JIX55_RS21405	COG1228	amidohydrolase
JIX55_RS21415	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JIX55_RS21420	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JIX55_RS21470	COG2986	histidine ammonia-lyase
JIX55_RS21485	COG2755	lipolytic protein G-D-S-L family
JIX55_RS21490	COG0183	Belongs to the thiolase family
JIX55_RS21520	COG1136	(ABC) transporter
JIX55_RS21520	COG0577	efflux transmembrane transporter activity
JIX55_RS21525	COG0577	efflux transmembrane transporter activity
JIX55_RS21530	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JIX55_RS21535	COG1252	NADH dehydrogenase
JIX55_RS21555	COG0148	phosphopyruvate hydratase activity
JIX55_RS21580	COG2124	cytochrome p450
JIX55_RS21650	COG0577	efflux transmembrane transporter activity
JIX55_RS21655	COG1136	(ABC) transporter
JIX55_RS21660	COG0477	Major facilitator Superfamily
JIX55_RS21670	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JIX55_RS21710	COG4585	Histidine kinase
JIX55_RS21725	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JIX55_RS21730	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JIX55_RS21735	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JIX55_RS21740	COG0193	aminoacyl-tRNA hydrolase activity
JIX55_RS21750	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JIX55_RS21760	COG1309	transcriptional regulator
JIX55_RS21765	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS21775	COG0477	Major facilitator Superfamily
JIX55_RS21785	COG4106	trans-aconitate 2-methyltransferase activity
JIX55_RS21795	COG2197	response regulator
JIX55_RS21805	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JIX55_RS21810	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JIX55_RS21880	COG0488	(ABC) transporter
JIX55_RS21910	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JIX55_RS21915	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JIX55_RS21925	COG0084	hydrolase, TatD family'
JIX55_RS21960	COG0442	prolyl-tRNA aminoacylation
JIX55_RS21990	COG1764	response to oxidative stress
JIX55_RS21995	COG1846	Transcriptional regulator
JIX55_RS22000	COG1122	ATPase activity
JIX55_RS22010	COG0310	cobalt ion transport
JIX55_RS22035	COG2318	DinB family
JIX55_RS22040	COG2409	Drug exporters of the RND superfamily
JIX55_RS22050	COG0793	Belongs to the peptidase S41A family
JIX55_RS22050	COG4946	Tricorn protease homolog
JIX55_RS22060	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS22065	COG2267	carboxylic ester hydrolase activity
JIX55_RS22070	COG2072	flavoprotein involved in K transport
JIX55_RS22080	COG0708	Exodeoxyribonuclease III
JIX55_RS22105	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS22110	COG0315	cyclic pyranopterin monophosphate synthase activity
JIX55_RS22110	COG0521	Mo-molybdopterin cofactor biosynthetic process
JIX55_RS22115	COG0315	cyclic pyranopterin monophosphate synthase activity
JIX55_RS22125	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JIX55_RS22130	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JIX55_RS22155	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JIX55_RS22165	COG1970	mechanosensitive ion channel activity
JIX55_RS22185	COG1376	ErfK ybiS ycfS ynhG family protein
JIX55_RS22200	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JIX55_RS22200	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JIX55_RS22200	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JIX55_RS22210	COG1349	DNA-binding transcription factor activity
JIX55_RS22215	COG0477	Major facilitator Superfamily
JIX55_RS22230	COG1247	-acetyltransferase
JIX55_RS22235	COG3384	dioxygenase
JIX55_RS22240	COG1846	Transcriptional regulator
JIX55_RS22260	COG1414	Transcriptional regulator
JIX55_RS22280	COG4555	ABC transporter
JIX55_RS22295	COG2072	flavoprotein involved in K transport
JIX55_RS22305	COG0640	Transcriptional regulator
JIX55_RS22310	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JIX55_RS22315	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS22330	COG2268	Band 7 protein
JIX55_RS22335	COG1585	Membrane protein implicated in regulation of membrane protease activity
JIX55_RS22350	COG3387	PFAM Glycoside hydrolase 15-related
JIX55_RS22465	COG0582	viral genome integration into host DNA
JIX55_RS22505	COG0789	Transcriptional regulator
JIX55_RS22550	COG4552	Acetyltransferase involved in intracellular survival and related
JIX55_RS22580	COG2409	Drug exporters of the RND superfamily
JIX55_RS22645	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JIX55_RS22650	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS22660	COG0475	glutathione-regulated potassium exporter activity
JIX55_RS22670	COG3903	Transcriptional regulator
JIX55_RS22670	COG3629	intracellular signal transduction
JIX55_RS22675	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JIX55_RS22695	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JIX55_RS22720	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JIX55_RS22725	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JIX55_RS22730	COG2050	protein possibly involved in aromatic compounds catabolism
JIX55_RS22735	COG1280	lysine exporter protein (LysE YggA)
JIX55_RS22740	COG1522	sequence-specific DNA binding
JIX55_RS22780	COG0386	Belongs to the glutathione peroxidase family
JIX55_RS22795	COG1686	Belongs to the peptidase S11 family
JIX55_RS22835	COG3896	Chloramphenicol phosphotransferase-like protein
JIX55_RS22900	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
JIX55_RS22950	COG2226	methyltransferase
JIX55_RS22955	COG4257	antibiotic catabolic process
JIX55_RS22970	COG1660	Displays ATPase and GTPase activities
JIX55_RS22985	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
JIX55_RS23065	COG3629	intracellular signal transduction
JIX55_RS23065	COG3903	Transcriptional regulator
JIX55_RS23095	COG1024	Enoyl-CoA hydratase
JIX55_RS23125	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JIX55_RS23125	COG0515	serine threonine protein kinase
JIX55_RS23145	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS23160	COG0259	pyridoxamine-phosphate oxidase activity
JIX55_RS23190	COG2072	flavoprotein involved in K transport
JIX55_RS23200	COG1024	Enoyl-CoA hydratase
JIX55_RS23240	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS23245	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS23260	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS23265	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS23275	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS23285	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS23330	COG0596	Alpha beta hydrolase
JIX55_RS23330	COG2945	thiolester hydrolase activity
JIX55_RS23340	COG4821	SIS domain
JIX55_RS23360	COG0259	pyridoxamine-phosphate oxidase activity
JIX55_RS23370	COG1024	Enoyl-CoA hydratase
JIX55_RS23375	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS23390	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JIX55_RS23405	COG5006	permease, DMT superfamily
JIX55_RS23460	COG0247	lactate metabolic process
JIX55_RS23460	COG0277	FAD linked oxidase domain protein
JIX55_RS23480	COG2124	cytochrome p450
JIX55_RS23490	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JIX55_RS23525	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
JIX55_RS23565	COG2226	methyltransferase
JIX55_RS23590	COG0667	Aldo Keto reductase
JIX55_RS23625	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JIX55_RS23655	COG1953	Uracil, thiamine, allantoin
JIX55_RS23690	COG2814	Major facilitator Superfamily
JIX55_RS23700	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JIX55_RS23705	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
JIX55_RS23745	COG1061	Type III restriction enzyme res subunit
JIX55_RS23750	COG5650	phosphatidylinositol metabolic process
JIX55_RS23760	COG3973	AAA domain
JIX55_RS23815	COG2755	lipolytic protein G-D-S-L family
JIX55_RS23850	COG1737	Transcriptional regulator
JIX55_RS23855	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
JIX55_RS23865	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS23865	COG2319	Wd-40 repeat
JIX55_RS23895	COG2318	DinB family
JIX55_RS23925	COG0459	protein refolding
JIX55_RS23930	COG1278	Cold shock
JIX55_RS23945	COG0463	Glycosyl transferase, family 2
JIX55_RS23965	COG2182	Extracellular solute-binding protein
JIX55_RS23975	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JIX55_RS24000	COG1595	DNA-templated transcription, initiation
JIX55_RS24005	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JIX55_RS24015	COG0494	nUDIX hydrolase
JIX55_RS24065	COG3842	ATPase activity
JIX55_RS24090	COG0215	cysteine-tRNA ligase activity
JIX55_RS24095	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JIX55_RS24100	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JIX55_RS24105	COG1329	Transcriptional regulator
JIX55_RS24120	COG5002	protein histidine kinase activity
JIX55_RS24140	COG0588	phosphoglycerate mutase activity
JIX55_RS24155	COG1917	Cupin 2, conserved barrel domain protein
JIX55_RS24155	COG2207	Transcriptional regulator
JIX55_RS24165	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS24220	COG2318	DinB family
JIX55_RS24230	COG3973	AAA domain
JIX55_RS24265	COG2188	Transcriptional regulator
JIX55_RS24275	COG2188	Transcriptional regulator
JIX55_RS24280	COG4552	Acetyltransferase involved in intracellular survival and related
JIX55_RS24295	COG1490	D-aminoacyl-tRNA deacylase activity
JIX55_RS24300	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JIX55_RS24305	COG0735	belongs to the Fur family
JIX55_RS24325	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS24360	COG2897	thiosulfate sulfurtransferase activity
JIX55_RS24385	COG0745	RESPONSE REGULATOR receiver
JIX55_RS24390	COG1609	Transcriptional regulator
JIX55_RS24400	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JIX55_RS24410	COG0745	RESPONSE REGULATOR receiver
JIX55_RS24470	COG0737	Belongs to the 5'-nucleotidase family
JIX55_RS24475	COG0456	acetyltransferase
JIX55_RS24480	COG1725	Transcriptional regulator
JIX55_RS24485	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JIX55_RS24500	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JIX55_RS24530	COG1937	Protein conserved in bacteria
JIX55_RS24540	COG0306	phosphate transporter
JIX55_RS24545	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JIX55_RS24565	COG0277	FAD linked oxidase domain protein
JIX55_RS24570	COG0671	phosphoesterase, PA-phosphatase related
JIX55_RS24575	COG0739	heme binding
JIX55_RS24575	COG0741	lytic transglycosylase activity
JIX55_RS24575	COG1196	nuclear chromosome segregation
JIX55_RS24600	COG0640	Transcriptional regulator
JIX55_RS24675	COG1846	Transcriptional regulator
JIX55_RS24690	COG1252	NADH dehydrogenase
JIX55_RS24700	COG0366	Alpha amylase catalytic
JIX55_RS24700	COG1470	cell adhesion involved in biofilm formation
JIX55_RS24720	COG0579	oxidoreductase
JIX55_RS24725	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JIX55_RS24745	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JIX55_RS24755	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JIX55_RS24755	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JIX55_RS24790	COG0596	Alpha beta hydrolase
JIX55_RS24805	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS24830	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS24835	COG0667	Aldo Keto reductase
JIX55_RS24840	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS24865	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS24870	COG0297	glycogen (starch) synthase activity
JIX55_RS24890	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JIX55_RS24990	COG1643	Atp-dependent helicase
JIX55_RS25030	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JIX55_RS25055	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JIX55_RS25060	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JIX55_RS25065	COG0047	phosphoribosylformylglycinamidine synthase activity
JIX55_RS25070	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JIX55_RS25105	COG2197	response regulator
JIX55_RS25115	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JIX55_RS25130	COG0151	Belongs to the GarS family
JIX55_RS25235	COG4974	Belongs to the 'phage' integrase family
JIX55_RS25300	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS25300	COG2319	Wd-40 repeat
JIX55_RS25325	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS25340	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS25375	COG1801	Protein of unknown function DUF72
JIX55_RS25380	COG1276	copper resistance
JIX55_RS25380	COG2372	response to copper ion
JIX55_RS25435	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JIX55_RS25470	COG1191	sigma factor activity
JIX55_RS25475	COG1191	sigma factor activity
JIX55_RS25495	COG2353	YceI-like domain
JIX55_RS25500	COG3467	pyridoxamine 5'-phosphate
JIX55_RS25515	COG0477	Major facilitator Superfamily
JIX55_RS25520	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JIX55_RS25530	COG2205	protein histidine kinase activity
JIX55_RS25535	COG0745	RESPONSE REGULATOR receiver
JIX55_RS25570	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS25575	COG1595	DNA-templated transcription, initiation
JIX55_RS25625	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JIX55_RS25640	COG0653	protein targeting
JIX55_RS25660	COG0006	proline dipeptidase activity
JIX55_RS25675	COG0641	radical SAM
JIX55_RS25705	COG1999	signal sequence binding
JIX55_RS25720	COG2837	iron assimilation
JIX55_RS25730	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JIX55_RS25735	COG0561	phosphatase activity
JIX55_RS25770	COG1131	(ABC) transporter
JIX55_RS25795	COG0789	Transcriptional regulator
JIX55_RS25800	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
JIX55_RS25810	COG0561	phosphatase activity
JIX55_RS25820	COG4988	ABC transporter
JIX55_RS25825	COG1294	oxidase, subunit
JIX55_RS25830	COG1271	oxidase subunit
JIX55_RS25835	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JIX55_RS25840	COG1609	Transcriptional regulator
JIX55_RS25860	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JIX55_RS25885	COG0662	Cupin 2, conserved barrel domain protein
JIX55_RS25890	COG1950	PFAM Membrane protein of
JIX55_RS25895	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JIX55_RS25900	COG0626	cystathionine gamma-synthase activity
JIX55_RS25955	COG0305	Participates in initiation and elongation during chromosome replication
JIX55_RS25965	COG0359	binds to the 23S rRNA
JIX55_RS25970	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JIX55_RS25975	COG0629	single-stranded DNA binding
JIX55_RS25980	COG0360	Binds together with S18 to 16S ribosomal RNA
JIX55_RS26005	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JIX55_RS26025	COG0617	tRNA 3'-terminal CCA addition
JIX55_RS26040	COG2815	serine threonine protein kinase
JIX55_RS26040	COG0515	serine threonine protein kinase
JIX55_RS26045	COG1595	DNA-templated transcription, initiation
JIX55_RS26055	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS26060	COG3118	belongs to the thioredoxin family
JIX55_RS26075	COG1192	Involved in chromosome partitioning
JIX55_RS26080	COG0357	Ribosomal RNA small subunit methyltransferase G
JIX55_RS26090	COG0706	membrane insertase activity
JIX55_RS26095	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JIX55_RS26100	COG0594	ribonuclease P activity
JIX55_RS26110	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JIX55_RS26115	COG0592	DNA-directed DNA polymerase activity
JIX55_RS26120	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JIX55_RS26125	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JIX55_RS26130	COG5512	Zn-ribbon-containing possibly RNA-binding protein and truncated derivatives
JIX55_RS26135	COG0187	DNA topoisomerase II activity
JIX55_RS26140	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JIX55_RS26170	COG0515	serine threonine protein kinase
JIX55_RS26195	COG0705	Rhomboid family
JIX55_RS26210	COG3764	Sortase (surface protein transpeptidase)
JIX55_RS26225	COG3764	Sortase (surface protein transpeptidase)
JIX55_RS26230	COG3764	Sortase (surface protein transpeptidase)
JIX55_RS26235	COG0515	serine threonine protein kinase
JIX55_RS26255	COG1716	ATPase activity
JIX55_RS26260	COG1716	ATPase activity
JIX55_RS26325	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS26330	COG1309	transcriptional regulator
JIX55_RS26335	COG1522	sequence-specific DNA binding
JIX55_RS26380	COG0604	alcohol dehydrogenase
JIX55_RS26380	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS26380	COG3321	synthase
JIX55_RS26395	COG0515	serine threonine protein kinase
JIX55_RS26400	COG0515	serine threonine protein kinase
JIX55_RS26415	COG0022	dehydrogenase e1 component
JIX55_RS26420	COG0508	dehydrogenase complex catalyzes the overall conversion of
JIX55_RS26480	COG1362	aminopeptidase activity
JIX55_RS26485	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS26495	COG1741	Belongs to the pirin family
JIX55_RS26515	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JIX55_RS26530	COG0604	alcohol dehydrogenase
JIX55_RS26560	COG3629	intracellular signal transduction
JIX55_RS26560	COG3903	Transcriptional regulator
JIX55_RS26600	COG2340	Cysteine-rich secretory protein family
JIX55_RS26610	COG3866	Pectate lyase
JIX55_RS26645	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JIX55_RS26710	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JIX55_RS26735	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JIX55_RS26750	COG0596	Alpha beta hydrolase
JIX55_RS26780	COG2205	protein histidine kinase activity
JIX55_RS26785	COG0745	RESPONSE REGULATOR receiver
JIX55_RS26855	COG1595	DNA-templated transcription, initiation
JIX55_RS26895	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JIX55_RS26915	COG4566	intracellular signal transduction
JIX55_RS26975	COG3345	alpha-galactosidase
JIX55_RS26990	COG1733	regulation of RNA biosynthetic process
JIX55_RS27010	COG1522	sequence-specific DNA binding
JIX55_RS27015	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JIX55_RS27040	COG0137	argininosuccinate synthase activity
JIX55_RS27075	COG1309	transcriptional regulator
JIX55_RS27135	COG1116	anion transmembrane transporter activity
JIX55_RS27140	COG4585	Histidine kinase
JIX55_RS27150	COG2197	response regulator
JIX55_RS27155	COG4585	Histidine kinase
JIX55_RS27200	COG0464	growth
JIX55_RS27245	COG3266	domain, Protein
JIX55_RS27255	COG1674	ftsk spoiiie
JIX55_RS27260	COG1404	Belongs to the peptidase S8 family
JIX55_RS27275	COG1595	DNA-templated transcription, initiation
JIX55_RS27295	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS27305	COG1819	glycosyl
JIX55_RS27320	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JIX55_RS27345	COG2197	response regulator
JIX55_RS27350	COG4585	Histidine kinase
JIX55_RS27360	COG1609	Transcriptional regulator
JIX55_RS27370	COG4552	Acetyltransferase involved in intracellular survival and related
JIX55_RS27390	COG3973	AAA domain
JIX55_RS27395	COG1819	glycosyl
JIX55_RS27405	COG2764	glyoxalase bleomycin resistance protein dioxygenase
JIX55_RS27410	COG2027	D-alanyl-D-alanine carboxypeptidase
JIX55_RS27420	COG1278	Cold shock
JIX55_RS27435	COG2197	response regulator
JIX55_RS27445	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JIX55_RS27455	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS27460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS27470	COG0513	Belongs to the DEAD box helicase family
JIX55_RS27475	COG1278	Cold shock
JIX55_RS27485	COG0667	Aldo Keto reductase
JIX55_RS27530	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JIX55_RS27535	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JIX55_RS27545	COG0662	Cupin 2, conserved barrel domain protein
JIX55_RS27565	COG4214	carbohydrate transport
JIX55_RS27575	COG4213	ABC transporter substrate-binding protein
JIX55_RS27615	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JIX55_RS27635	COG0513	Belongs to the DEAD box helicase family
JIX55_RS27640	COG1278	Cold shock
JIX55_RS27725	COG1316	TRANSCRIPTIONal
JIX55_RS27730	COG1215	transferase activity, transferring glycosyl groups
JIX55_RS27855	COG1404	Belongs to the peptidase S8 family
JIX55_RS27870	COG0745	RESPONSE REGULATOR receiver
JIX55_RS27875	COG5002	protein histidine kinase activity
JIX55_RS27905	COG3250	beta-galactosidase activity
JIX55_RS27945	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JIX55_RS27970	COG0494	nUDIX hydrolase
JIX55_RS27980	COG2188	Transcriptional regulator
JIX55_RS27990	COG2188	Transcriptional regulator
JIX55_RS28055	COG0717	Belongs to the dCTP deaminase family
JIX55_RS28115	COG2181	nitrate reductase activity
JIX55_RS28115	COG0247	lactate metabolic process
JIX55_RS28125	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JIX55_RS28130	COG0443	Heat shock 70 kDa protein
JIX55_RS28135	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JIX55_RS28140	COG0484	heat shock protein binding
JIX55_RS28145	COG0789	Transcriptional regulator
JIX55_RS28160	COG4677	pectinesterase activity
JIX55_RS28375	COG4213	ABC transporter substrate-binding protein
JIX55_RS28390	COG1305	Transglutaminase-like
JIX55_RS28435	COG0542	response to heat
JIX55_RS28460	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JIX55_RS28475	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JIX55_RS28480	COG0191	fructose-bisphosphate aldolase activity
JIX55_RS28485	COG0477	Major facilitator Superfamily
JIX55_RS28495	COG3483	tryptophan 2,3-dioxygenase activity
JIX55_RS28500	COG3844	kynureninase activity
JIX55_RS28520	COG4585	Histidine kinase
JIX55_RS28525	COG2197	response regulator
JIX55_RS28530	COG4585	Histidine kinase
JIX55_RS28535	COG2197	response regulator
JIX55_RS28550	COG3559	Exporter of polyketide antibiotics
JIX55_RS28555	COG1131	(ABC) transporter
JIX55_RS28570	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS28620	COG4303	Ethanolamine ammonia lyase large subunit
JIX55_RS28635	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JIX55_RS28650	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JIX55_RS28700	COG1802	Transcriptional regulator
JIX55_RS28705	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JIX55_RS28715	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JIX55_RS28750	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JIX55_RS28755	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JIX55_RS28805	COG3903	Transcriptional regulator
JIX55_RS28805	COG3629	intracellular signal transduction
JIX55_RS28815	COG5002	protein histidine kinase activity
JIX55_RS28820	COG0745	RESPONSE REGULATOR receiver
JIX55_RS28835	COG1595	DNA-templated transcription, initiation
JIX55_RS28885	COG0701	Predicted permease
JIX55_RS28905	COG2319	Wd-40 repeat
JIX55_RS28905	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS28910	COG1408	metallophosphoesterase
JIX55_RS28915	COG2409	Drug exporters of the RND superfamily
JIX55_RS28930	COG2409	Drug exporters of the RND superfamily
JIX55_RS28940	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JIX55_RS28990	COG1408	metallophosphoesterase
JIX55_RS29000	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JIX55_RS29010	COG0003	Pfam Anion-transporting ATPase
JIX55_RS29025	COG0251	oxidation-reduction process
JIX55_RS29035	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JIX55_RS29070	COG2267	carboxylic ester hydrolase activity
JIX55_RS29080	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JIX55_RS29085	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JIX55_RS29090	COG0659	secondary active sulfate transmembrane transporter activity
JIX55_RS29150	COG1111	helicase
JIX55_RS29150	COG1205	dead DEAH box helicase
JIX55_RS29155	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS29165	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
JIX55_RS29180	COG0515	serine threonine protein kinase
JIX55_RS29180	COG2815	serine threonine protein kinase
JIX55_RS29190	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JIX55_RS29190	COG1754	DNA topoisomerase type I activity
JIX55_RS29195	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JIX55_RS29200	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JIX55_RS29235	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS29250	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS29255	COG3268	Saccharopine dehydrogenase
JIX55_RS29310	COG1653	transport
JIX55_RS29355	COG0395	ABC-type sugar transport system, permease component
JIX55_RS29360	COG1175	transmembrane transport
JIX55_RS29410	COG3903	Transcriptional regulator
JIX55_RS29410	COG3629	intracellular signal transduction
JIX55_RS29415	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JIX55_RS29415	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JIX55_RS29445	COG1136	(ABC) transporter
JIX55_RS29445	COG0577	efflux transmembrane transporter activity
JIX55_RS29465	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JIX55_RS29470	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JIX55_RS29475	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JIX55_RS29480	COG0254	rRNA binding
JIX55_RS29490	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JIX55_RS29510	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS29530	COG0076	glutamate decarboxylase activity
JIX55_RS29545	COG0789	Transcriptional regulator
JIX55_RS29560	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JIX55_RS29565	COG2027	D-alanyl-D-alanine carboxypeptidase
JIX55_RS29575	COG0037	tRNA processing
JIX55_RS29590	COG0302	gtp cyclohydrolase
JIX55_RS29605	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JIX55_RS29645	COG0649	NAD binding
JIX55_RS29660	COG2197	response regulator
JIX55_RS29665	COG1660	Displays ATPase and GTPase activities
JIX55_RS29685	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JIX55_RS29690	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JIX55_RS29700	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
JIX55_RS29720	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JIX55_RS29760	COG2205	protein histidine kinase activity
JIX55_RS29765	COG0745	RESPONSE REGULATOR receiver
JIX55_RS29775	COG1595	DNA-templated transcription, initiation
JIX55_RS29780	COG1194	a g-specific adenine glycosylase
JIX55_RS29795	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
JIX55_RS29820	COG0248	Ppx GppA phosphatase
JIX55_RS29825	COG1082	Xylose isomerase domain protein TIM barrel
JIX55_RS29830	COG1309	transcriptional regulator
JIX55_RS29835	COG0129	dihydroxy-acid dehydratase activity
JIX55_RS29840	COG0515	serine threonine protein kinase
JIX55_RS29840	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JIX55_RS29845	COG4991	sh3 domain protein
JIX55_RS29860	COG0659	secondary active sulfate transmembrane transporter activity
JIX55_RS29865	COG0842	Transport permease protein
JIX55_RS29865	COG1129	ABC transporter
JIX55_RS29875	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JIX55_RS29880	COG0180	Tryptophanyl-tRNA synthetase
JIX55_RS29900	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JIX55_RS29905	COG0738	Major facilitator superfamily
JIX55_RS29910	COG0123	including yeast histone deacetylase and acetoin utilization protein
JIX55_RS29960	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
JIX55_RS29965	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
JIX55_RS29970	COG0181	hydroxymethylbilane synthase activity
JIX55_RS29985	COG0113	porphobilinogen synthase activity
JIX55_RS30000	COG3152	Membrane
JIX55_RS30015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JIX55_RS30035	COG0018	arginyl-trna synthetase
JIX55_RS30040	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
JIX55_RS30060	COG1690	Belongs to the RtcB family
JIX55_RS30090	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS30105	COG0745	RESPONSE REGULATOR receiver
JIX55_RS30110	COG2205	protein histidine kinase activity
JIX55_RS30160	COG0725	ABC transporter, periplasmic molybdate-binding protein
JIX55_RS30200	COG0436	Aminotransferase
JIX55_RS30220	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JIX55_RS30235	COG0697	spore germination
JIX55_RS30270	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JIX55_RS30300	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JIX55_RS30305	COG0406	alpha-ribazole phosphatase activity
JIX55_RS30325	COG1333	cytochrome c biogenesis protein
JIX55_RS30330	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JIX55_RS30345	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS30380	COG1725	Transcriptional regulator
JIX55_RS30465	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS30465	COG3321	synthase
JIX55_RS30465	COG0604	alcohol dehydrogenase
JIX55_RS30480	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JIX55_RS30495	COG0163	prenyltransferase activity
JIX55_RS30505	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
JIX55_RS30520	COG1309	transcriptional regulator
JIX55_RS30560	COG1231	oxidoreductase activity
JIX55_RS30565	COG3961	Belongs to the TPP enzyme family
JIX55_RS30650	COG1278	Cold shock
JIX55_RS30655	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
JIX55_RS30660	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JIX55_RS30660	COG0515	serine threonine protein kinase
JIX55_RS30670	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
JIX55_RS30680	COG2226	methyltransferase
JIX55_RS30705	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS30705	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
JIX55_RS30710	COG0791	NLP P60 protein
JIX55_RS30710	COG1388	LysM domain
JIX55_RS30710	COG3103	Sh3 type 3 domain protein
JIX55_RS30720	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS30725	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS30730	COG0649	NAD binding
JIX55_RS30740	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
JIX55_RS30745	COG1034	ATP synthesis coupled electron transport
JIX55_RS30750	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JIX55_RS30755	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS30760	COG0839	Belongs to the complex I subunit 6 family
JIX55_RS30765	COG0713	ATP synthesis coupled electron transport
JIX55_RS30770	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JIX55_RS30780	COG1007	ATP synthesis coupled electron transport
JIX55_RS30785	COG0514	ATP-dependent DNA helicase (RecQ)
JIX55_RS30800	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS30805	COG0561	phosphatase activity
JIX55_RS30815	COG0142	geranyltranstransferase activity
JIX55_RS30840	COG0655	NAD(P)H dehydrogenase (quinone) activity
JIX55_RS30845	COG0494	nUDIX hydrolase
JIX55_RS30850	COG0154	amidase activity
JIX55_RS30900	COG0739	heme binding
JIX55_RS30900	COG0741	lytic transglycosylase activity
JIX55_RS30900	COG1196	nuclear chromosome segregation
JIX55_RS30930	COG0702	epimerase
JIX55_RS30935	COG1733	regulation of RNA biosynthetic process
JIX55_RS30940	COG1013	pyruvate-flavodoxin oxidoreductase activity
JIX55_RS30945	COG0674	pyruvate-flavodoxin oxidoreductase activity
JIX55_RS30945	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JIX55_RS30965	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS30970	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS30975	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS30980	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JIX55_RS30985	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS30990	COG0839	Belongs to the complex I subunit 6 family
JIX55_RS30995	COG0713	ATP synthesis coupled electron transport
JIX55_RS31010	COG1007	ATP synthesis coupled electron transport
JIX55_RS31015	COG0501	Belongs to the peptidase M48B family
JIX55_RS31020	COG3304	Inner membrane component domain
JIX55_RS31035	COG2261	transglycosylase associated protein
JIX55_RS31040	COG1666	GTP binding
JIX55_RS31055	COG0702	epimerase
JIX55_RS31065	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS31080	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JIX55_RS31085	COG2030	dehydratase
JIX55_RS31095	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JIX55_RS31100	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JIX55_RS31105	COG0436	Aminotransferase
JIX55_RS31120	COG0250	Participates in transcription elongation, termination and antitermination
JIX55_RS31130	COG0081	regulation of translation
JIX55_RS31155	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JIX55_RS31160	COG0222	ribosome binding
JIX55_RS31165	COG0085	RNA polymerase activity
JIX55_RS31170	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JIX55_RS31180	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JIX55_RS31185	COG0049	tRNA binding
JIX55_RS31190	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JIX55_RS31195	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JIX55_RS31230	COG0051	transcription antitermination factor activity, RNA binding
JIX55_RS31235	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JIX55_RS31240	COG0088	Forms part of the polypeptide exit tunnel
JIX55_RS31245	COG0089	rRNA binding
JIX55_RS31250	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JIX55_RS31255	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JIX55_RS31260	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JIX55_RS31265	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JIX55_RS31270	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JIX55_RS31275	COG0255	Belongs to the universal ribosomal protein uL29 family
JIX55_RS31280	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JIX55_RS31285	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JIX55_RS31290	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JIX55_RS31295	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JIX55_RS31300	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JIX55_RS31305	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JIX55_RS31310	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JIX55_RS31315	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JIX55_RS31320	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JIX55_RS31325	COG1841	ribosomal large subunit assembly
JIX55_RS31330	COG0200	Binds to the 23S rRNA
JIX55_RS31340	COG0563	adenylate kinase activity
JIX55_RS31350	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JIX55_RS31355	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JIX55_RS31360	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JIX55_RS31365	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JIX55_RS31370	COG0202	RNA polymerase activity
JIX55_RS31375	COG0203	ribosomal protein L17
JIX55_RS31380	COG0101	tRNA pseudouridine synthase activity
JIX55_RS31390	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JIX55_RS31395	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JIX55_RS31400	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JIX55_RS31410	COG1072	(Pantothenic acid kinase))
JIX55_RS31425	COG0736	holo-[acyl-carrier-protein] synthase activity
JIX55_RS31430	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JIX55_RS31440	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JIX55_RS31450	COG0802	atpase or kinase
JIX55_RS31475	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JIX55_RS31490	COG1472	Belongs to the glycosyl hydrolase 3 family
JIX55_RS31500	COG1175	transmembrane transport
JIX55_RS31505	COG1653	transport
JIX55_RS31520	COG1316	TRANSCRIPTIONal
JIX55_RS31530	COG4941	Belongs to the sigma-70 factor family
JIX55_RS31540	COG0726	polysaccharide deacetylase
JIX55_RS31550	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JIX55_RS31555	COG0459	protein refolding
JIX55_RS31565	COG4221	oxidoreductase activity
JIX55_RS31575	COG0583	DNA-binding transcription factor activity
JIX55_RS31585	COG2197	response regulator
JIX55_RS31590	COG1595	DNA-templated transcription, initiation
JIX55_RS31600	COG0516	GMP reductase activity
JIX55_RS31615	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JIX55_RS31635	COG0515	serine threonine protein kinase
JIX55_RS31635	COG2815	serine threonine protein kinase
JIX55_RS31655	COG0515	serine threonine protein kinase
JIX55_RS31660	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS31680	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JIX55_RS31680	COG0519	Catalyzes the synthesis of GMP from XMP
JIX55_RS31725	COG2197	response regulator
JIX55_RS31740	COG0791	NLP P60 protein
JIX55_RS31760	COG0739	heme binding
JIX55_RS31770	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS31770	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS31785	COG0714	Associated with various cellular activities
JIX55_RS31790	COG2425	protein containing a von Willebrand factor type A (vWA) domain
JIX55_RS31800	COG3552	Protein containing von Willebrand factor type A (VWA) domain
JIX55_RS31820	COG0045	succinate-CoA ligase (ADP-forming) activity
JIX55_RS31850	COG0138	bifunctional purine biosynthesis protein purh
JIX55_RS31885	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JIX55_RS31910	COG0039	L-malate dehydrogenase activity
JIX55_RS31915	COG1846	Transcriptional regulator
JIX55_RS31915	COG0456	acetyltransferase
JIX55_RS31925	COG0754	glutathionylspermidine amidase activity
JIX55_RS31930	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JIX55_RS31945	COG1595	DNA-templated transcription, initiation
JIX55_RS31950	COG0180	Tryptophanyl-tRNA synthetase
JIX55_RS31975	COG0671	phosphoesterase, PA-phosphatase related
JIX55_RS31985	COG1295	ribonuclease BN
JIX55_RS31990	COG1686	Belongs to the peptidase S11 family
JIX55_RS32000	COG1408	metallophosphoesterase
JIX55_RS32015	COG2205	protein histidine kinase activity
JIX55_RS32020	COG0745	RESPONSE REGULATOR receiver
JIX55_RS32025	COG2409	Drug exporters of the RND superfamily
JIX55_RS32035	COG1309	transcriptional regulator
JIX55_RS32105	COG1053	succinate dehydrogenase
JIX55_RS32115	COG2009	succinate dehydrogenase
JIX55_RS32155	COG1595	DNA-templated transcription, initiation
JIX55_RS32165	COG1595	DNA-templated transcription, initiation
JIX55_RS32180	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS32180	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS32195	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JIX55_RS32205	COG1216	Glycosyl transferase, family 2
JIX55_RS32220	COG2089	acid synthase
JIX55_RS32235	COG1473	amidohydrolase
JIX55_RS32235	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
JIX55_RS32240	COG1744	ABC transporter substrate-binding protein PnrA-like
JIX55_RS32245	COG1744	ABC transporter substrate-binding protein PnrA-like
JIX55_RS32250	COG3845	ABC transporter
JIX55_RS32255	COG4603	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS32260	COG1079	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS32285	COG2814	Major facilitator Superfamily
JIX55_RS32290	COG0583	DNA-binding transcription factor activity
JIX55_RS32300	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JIX55_RS32325	COG2205	protein histidine kinase activity
JIX55_RS32330	COG0745	RESPONSE REGULATOR receiver
JIX55_RS32335	COG1595	DNA-templated transcription, initiation
JIX55_RS32345	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS32350	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS32355	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JIX55_RS32370	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JIX55_RS32390	COG1349	DNA-binding transcription factor activity
JIX55_RS32400	COG4770	biotin carboxylase activity
JIX55_RS32410	COG0424	maF-like protein
JIX55_RS32425	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JIX55_RS32435	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
JIX55_RS32445	COG1024	Enoyl-CoA hydratase
JIX55_RS32455	COG2986	histidine ammonia-lyase
JIX55_RS32470	COG1376	ErfK ybiS ycfS ynhG family protein
JIX55_RS32480	COG1136	(ABC) transporter
JIX55_RS32495	COG1064	alcohol dehydrogenase
JIX55_RS32500	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS32505	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS32535	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JIX55_RS32565	COG1595	DNA-templated transcription, initiation
JIX55_RS32570	COG2255	four-way junction helicase activity
JIX55_RS32575	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JIX55_RS32590	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JIX55_RS32600	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JIX55_RS32615	COG1331	Highly conserved protein containing a thioredoxin domain
JIX55_RS32670	COG1309	transcriptional regulator
JIX55_RS32675	COG0477	Major facilitator Superfamily
JIX55_RS32685	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
JIX55_RS32740	COG0745	RESPONSE REGULATOR receiver
JIX55_RS32760	COG2205	protein histidine kinase activity
JIX55_RS32775	COG0436	Aminotransferase
JIX55_RS32790	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
JIX55_RS32805	COG1414	Transcriptional regulator
JIX55_RS32815	COG2610	gluconate transmembrane transporter activity
JIX55_RS32910	COG2197	response regulator
JIX55_RS32930	COG2885	chlorophyll binding
JIX55_RS32940	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JIX55_RS32945	COG1733	regulation of RNA biosynthetic process
JIX55_RS32960	COG0741	lytic transglycosylase activity
JIX55_RS32965	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JIX55_RS32970	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JIX55_RS32985	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JIX55_RS32995	COG1136	(ABC) transporter
JIX55_RS33005	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JIX55_RS33015	COG3557	Belongs to the UPF0374 family
JIX55_RS33020	COG0114	fumarate hydratase activity
JIX55_RS33025	COG1122	ATPase activity
JIX55_RS33045	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JIX55_RS33045	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JIX55_RS33070	COG0778	Nitroreductase
JIX55_RS33075	COG1722	exodeoxyribonuclease VII activity
JIX55_RS33080	COG1570	exodeoxyribonuclease VII activity
JIX55_RS33085	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JIX55_RS33100	COG0012	GTP binding
JIX55_RS33110	COG1609	Transcriptional regulator
JIX55_RS33130	COG0133	tryptophan synthase activity
JIX55_RS33180	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JIX55_RS33185	COG1053	succinate dehydrogenase
JIX55_RS33210	COG1217	gtp-binding protein TYPA
JIX55_RS33215	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS33220	COG4166	transmembrane transport
JIX55_RS33225	COG0601	transmembrane transport
JIX55_RS33235	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS33245	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JIX55_RS33275	COG0601	transmembrane transport
JIX55_RS33280	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS33285	COG0444	Belongs to the ABC transporter superfamily
JIX55_RS33290	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS33305	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JIX55_RS33350	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JIX55_RS33370	COG2818	Glycosylase
JIX55_RS33375	COG1024	Enoyl-CoA hydratase
JIX55_RS33390	COG1595	DNA-templated transcription, initiation
JIX55_RS33400	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JIX55_RS33405	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JIX55_RS33430	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JIX55_RS33440	COG0598	Magnesium transport protein CorA
JIX55_RS33455	COG0613	PHP domain protein
JIX55_RS33460	COG2095	MarC family integral membrane protein
JIX55_RS33470	COG1432	Conserved Protein
JIX55_RS33545	COG0596	Alpha beta hydrolase
JIX55_RS33570	COG0210	DNA helicase
JIX55_RS33575	COG0210	DNA helicase
JIX55_RS33620	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JIX55_RS33675	COG3480	Lon protease (S16) C-terminal proteolytic domain
JIX55_RS33685	COG1615	UPF0182 protein
JIX55_RS33715	COG0483	inositol monophosphate 1-phosphatase activity
JIX55_RS33730	COG1162	GTPase activity
JIX55_RS33735	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JIX55_RS33745	COG2135	peptidase activity
JIX55_RS33755	COG1595	DNA-templated transcription, initiation
JIX55_RS33760	COG5662	AntiSigma factor
JIX55_RS33790	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JIX55_RS33790	COG2199	diguanylate cyclase activity
JIX55_RS33805	COG0242	peptide deformylase activity
JIX55_RS33840	COG1957	nucleoside hydrolase
JIX55_RS33855	COG2188	Transcriptional regulator
JIX55_RS33860	COG2182	Extracellular solute-binding protein
JIX55_RS33865	COG1175	transmembrane transport
JIX55_RS33870	COG0395	ABC-type sugar transport system, permease component
JIX55_RS33875	COG1472	Belongs to the glycosyl hydrolase 3 family
JIX55_RS33880	COG0363	glucosamine-6-phosphate deaminase activity
JIX55_RS33895	COG1597	lipid kinase activity
JIX55_RS33925	COG2515	1-aminocyclopropane-1-carboxylate deaminase
JIX55_RS33935	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JIX55_RS33940	COG0142	geranyltranstransferase activity
JIX55_RS34010	COG1126	abc transporter atp-binding protein
JIX55_RS34030	COG0604	alcohol dehydrogenase
JIX55_RS34065	COG0567	Dehydrogenase, E1 component
JIX55_RS34065	COG0508	dehydrogenase complex catalyzes the overall conversion of
JIX55_RS34070	COG2205	protein histidine kinase activity
JIX55_RS34075	COG0745	RESPONSE REGULATOR receiver
JIX55_RS34090	COG2211	Major facilitator Superfamily
JIX55_RS34095	COG1309	transcriptional regulator
JIX55_RS34105	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JIX55_RS34195	COG2205	protein histidine kinase activity
JIX55_RS34215	COG1793	dna ligase
JIX55_RS34215	COG3285	dna ligase
JIX55_RS34225	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JIX55_RS34240	COG3284	Transcriptional regulator
JIX55_RS34310	COG0745	RESPONSE REGULATOR receiver
JIX55_RS34315	COG0018	arginyl-trna synthetase
JIX55_RS34320	COG0019	diaminopimelate decarboxylase activity
JIX55_RS34325	COG0460	homoserine dehydrogenase
JIX55_RS34330	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JIX55_RS34335	COG0083	homoserine kinase activity
JIX55_RS34355	COG0254	rRNA binding
JIX55_RS34360	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JIX55_RS34365	COG2890	protein-(glutamine-N5) methyltransferase activity
JIX55_RS34375	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JIX55_RS34380	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JIX55_RS34405	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JIX55_RS34410	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JIX55_RS34415	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JIX55_RS34420	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JIX55_RS34425	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JIX55_RS34430	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JIX55_RS34435	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JIX55_RS34485	COG2197	response regulator
JIX55_RS34490	COG4585	Histidine kinase
JIX55_RS34515	COG1309	transcriptional regulator
JIX55_RS34520	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS34535	COG1637	Cleaves both 3' and 5' ssDNA extremities of branched DNA structures
JIX55_RS34570	COG1131	(ABC) transporter
JIX55_RS34590	COG0183	Belongs to the thiolase family
JIX55_RS34610	COG0745	RESPONSE REGULATOR receiver
JIX55_RS34675	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS34675	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS34710	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JIX55_RS34715	COG0857	belongs to the CobB CobQ family
JIX55_RS34715	COG0280	phosphate acetyltransferase
JIX55_RS34720	COG0205	6-phosphofructokinase activity
JIX55_RS34745	COG0395	ABC-type sugar transport system, permease component
JIX55_RS34750	COG1175	transmembrane transport
JIX55_RS34765	COG4565	transcriptional regulatory protein
JIX55_RS34770	COG3290	protein histidine kinase activity
JIX55_RS34775	COG1301	dicarboxylic acid transport
JIX55_RS34785	COG3118	belongs to the thioredoxin family
JIX55_RS34785	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS34800	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JIX55_RS34805	COG3281	Trehalose synthase
JIX55_RS34815	COG0366	Alpha amylase catalytic
JIX55_RS34825	COG0058	SHG alpha-glucan phosphorylase activity
JIX55_RS34865	COG1132	(ABC) transporter
JIX55_RS34870	COG1132	(ABC) transporter
JIX55_RS34875	COG1132	(ABC) transporter
JIX55_RS34880	COG1132	(ABC) transporter
JIX55_RS34915	COG1376	ErfK ybiS ycfS ynhG family protein
JIX55_RS34920	COG1024	Enoyl-CoA hydratase
JIX55_RS34955	COG3409	Peptidoglycan-binding domain 1 protein
JIX55_RS34955	COG3757	hydrolase, family 25
JIX55_RS35040	COG0464	growth
JIX55_RS35065	COG1760	l-serine dehydratase
JIX55_RS35070	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JIX55_RS35075	COG0509	glycine decarboxylation via glycine cleavage system
JIX55_RS35080	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JIX55_RS35100	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS35105	COG4166	transmembrane transport
JIX55_RS35115	COG0444	Belongs to the ABC transporter superfamily
JIX55_RS35120	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS35125	COG2860	membrane
JIX55_RS35145	COG1309	transcriptional regulator
JIX55_RS35165	COG2132	Multicopper oxidase
JIX55_RS35170	COG3023	N-Acetylmuramoyl-L-alanine amidase
JIX55_RS35175	COG0482	sulfurtransferase activity
JIX55_RS35185	COG1611	Belongs to the LOG family
JIX55_RS35190	COG4221	oxidoreductase activity
JIX55_RS35200	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JIX55_RS35210	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JIX55_RS35215	COG0154	amidase activity
JIX55_RS35225	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JIX55_RS35230	COG2409	Drug exporters of the RND superfamily
JIX55_RS35235	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS35250	COG2197	response regulator
JIX55_RS35255	COG2133	pyrroloquinoline quinone binding
JIX55_RS35260	COG0667	Aldo Keto reductase
JIX55_RS35270	COG3300	MHYT domain
JIX55_RS35270	COG5001	Diguanylate cyclase
JIX55_RS35280	COG0440	acetolactate synthase activity
JIX55_RS35285	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JIX55_RS35295	COG2197	response regulator
JIX55_RS35300	COG0477	Major facilitator Superfamily
JIX55_RS35310	COG0515	serine threonine protein kinase
JIX55_RS35310	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JIX55_RS35315	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS35325	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS35330	COG4166	transmembrane transport
JIX55_RS35360	COG2508	Transcriptional regulator
JIX55_RS35365	COG0506	proline dehydrogenase activity
JIX55_RS35370	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS35385	COG0473	3-isopropylmalate dehydrogenase activity
JIX55_RS35390	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JIX55_RS35395	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JIX55_RS35450	COG2353	YceI-like domain
JIX55_RS35455	COG5492	domain, Protein
JIX55_RS35460	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JIX55_RS35480	COG2018	Roadblock/LC7 domain
JIX55_RS35500	COG2018	Roadblock/LC7 domain
JIX55_RS35505	COG5002	protein histidine kinase activity
JIX55_RS35515	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS35520	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JIX55_RS35565	COG1414	Transcriptional regulator
JIX55_RS35570	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JIX55_RS35575	COG0066	3-isopropylmalate dehydratase activity
JIX55_RS35585	COG0776	regulation of translation
JIX55_RS35595	COG1920	GTP binding
JIX55_RS35605	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JIX55_RS35610	COG1181	Belongs to the D-alanine--D-alanine ligase family
JIX55_RS35630	COG0351	phosphomethylpyrimidine kinase
JIX55_RS35645	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JIX55_RS35650	COG1461	Dihydroxyacetone kinase
JIX55_RS35660	COG0326	Molecular chaperone. Has ATPase activity
JIX55_RS35670	COG0742	ribosomal rna small subunit methyltransferase
JIX55_RS35675	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JIX55_RS35690	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JIX55_RS35695	COG0571	ribonuclease III activity
JIX55_RS35700	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JIX55_RS35705	COG1733	regulation of RNA biosynthetic process
JIX55_RS35710	COG2340	Cysteine-rich secretory protein family
JIX55_RS35715	COG1254	Belongs to the acylphosphatase family
JIX55_RS35725	COG1196	nuclear chromosome segregation
JIX55_RS35730	COG0477	Major facilitator Superfamily
JIX55_RS35770	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JIX55_RS35785	COG0442	prolyl-tRNA aminoacylation
JIX55_RS35795	COG0228	four-way junction DNA binding
JIX55_RS35800	COG1837	Belongs to the UPF0109 family
JIX55_RS35805	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JIX55_RS35810	COG0336	Belongs to the RNA methyltransferase TrmD family
JIX55_RS35815	COG0335	large ribosomal subunit rRNA binding
JIX55_RS35830	COG0681	Belongs to the peptidase S26 family
JIX55_RS35835	COG0681	Belongs to the peptidase S26 family
JIX55_RS35850	COG0792	nuclease activity
JIX55_RS35865	COG1191	sigma factor activity
JIX55_RS35875	COG4942	peptidase
JIX55_RS35880	COG0052	Belongs to the universal ribosomal protein uS2 family
JIX55_RS35885	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JIX55_RS35890	COG0528	UMP kinase activity
JIX55_RS35895	COG0233	cytoplasmic translational termination
JIX55_RS35900	COG0575	Belongs to the CDS family
JIX55_RS35910	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JIX55_RS35920	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JIX55_RS35925	COG3842	ATPase activity
JIX55_RS35960	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JIX55_RS35970	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS35975	COG1007	ATP synthesis coupled electron transport
JIX55_RS35980	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS36000	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JIX55_RS36010	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JIX55_RS36045	COG2132	Multicopper oxidase
JIX55_RS36050	COG1309	transcriptional regulator
JIX55_RS36105	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JIX55_RS36115	COG2353	YceI-like domain
JIX55_RS36145	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JIX55_RS36170	COG3842	ATPase activity
JIX55_RS36175	COG1176	ABC-type spermidine putrescine transport system, permease component I
JIX55_RS36180	COG1177	transmembrane transport
JIX55_RS36185	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JIX55_RS36210	COG2508	Transcriptional regulator
JIX55_RS36215	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS36220	COG1472	Belongs to the glycosyl hydrolase 3 family
JIX55_RS36230	COG4209	transmembrane transport
JIX55_RS36235	COG0395	ABC-type sugar transport system, permease component
JIX55_RS36265	COG1609	Transcriptional regulator
JIX55_RS36275	COG1175	transmembrane transport
JIX55_RS36285	COG3250	beta-galactosidase activity
JIX55_RS36295	COG0628	permease
JIX55_RS36330	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JIX55_RS36335	COG0750	zinc metalloprotease
JIX55_RS36340	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
JIX55_RS36355	COG0442	prolyl-tRNA aminoacylation
JIX55_RS36385	COG0779	Required for maturation of 30S ribosomal subunits
JIX55_RS36400	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JIX55_RS36410	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JIX55_RS36415	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JIX55_RS36425	COG0455	bacterial-type flagellum organization
JIX55_RS36455	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JIX55_RS36460	COG1185	polyribonucleotide nucleotidyltransferase activity
JIX55_RS36465	COG0612	Peptidase, M16
JIX55_RS36470	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JIX55_RS36500	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS36505	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JIX55_RS36535	COG2770	Histidine kinase
JIX55_RS36535	COG2208	phosphoserine phosphatase activity
JIX55_RS36540	COG3850	Histidine kinase
JIX55_RS36540	COG2205	protein histidine kinase activity
JIX55_RS36540	COG4999	Histidine kinase
JIX55_RS36540	COG3437	response regulator, receiver
JIX55_RS36550	COG1674	ftsk spoiiie
JIX55_RS36560	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JIX55_RS36570	COG1546	Belongs to the CinA family
JIX55_RS36570	COG1058	Belongs to the CinA family
JIX55_RS36575	COG1396	sequence-specific DNA binding
JIX55_RS36580	COG0783	Belongs to the Dps family
JIX55_RS36590	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS36595	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JIX55_RS36600	COG1201	RNA secondary structure unwinding
JIX55_RS36620	COG0628	permease
JIX55_RS36625	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JIX55_RS36640	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS36655	COG3629	intracellular signal transduction
JIX55_RS36655	COG3903	Transcriptional regulator
JIX55_RS36665	COG0765	amino acid transport
JIX55_RS36670	COG0765	amino acid transport
JIX55_RS36675	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JIX55_RS36680	COG1126	abc transporter atp-binding protein
JIX55_RS36685	COG0745	RESPONSE REGULATOR receiver
JIX55_RS36690	COG2205	protein histidine kinase activity
JIX55_RS36745	COG1674	ftsk spoiiie
JIX55_RS36750	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JIX55_RS36770	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JIX55_RS36780	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JIX55_RS36785	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JIX55_RS36795	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JIX55_RS36840	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JIX55_RS36845	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JIX55_RS36850	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JIX55_RS36855	COG4974	Belongs to the 'phage' integrase family
JIX55_RS36890	COG0588	phosphoglycerate mutase activity
JIX55_RS36915	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JIX55_RS36960	COG2186	Transcriptional regulator
JIX55_RS36965	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JIX55_RS36980	COG0187	DNA topoisomerase II activity
JIX55_RS36990	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JIX55_RS36995	COG4565	transcriptional regulatory protein
JIX55_RS37000	COG3290	protein histidine kinase activity
JIX55_RS37015	COG0372	Belongs to the citrate synthase family
JIX55_RS37040	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JIX55_RS37045	COG0612	Peptidase, M16
JIX55_RS37060	COG1802	Transcriptional regulator
JIX55_RS37065	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JIX55_RS37085	COG1435	thymidine kinase activity
JIX55_RS37110	COG0583	DNA-binding transcription factor activity
JIX55_RS37115	COG2814	Major facilitator Superfamily
JIX55_RS37130	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JIX55_RS37165	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JIX55_RS37180	COG0745	RESPONSE REGULATOR receiver
JIX55_RS37185	COG2205	protein histidine kinase activity
JIX55_RS37210	COG0756	dUTP diphosphatase activity
JIX55_RS37245	COG0569	domain protein
JIX55_RS37250	COG0531	amino acid
JIX55_RS37255	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JIX55_RS37265	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JIX55_RS37310	COG0243	molybdopterin cofactor binding
JIX55_RS37315	COG1799	cell septum assembly
JIX55_RS37360	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS37365	COG1609	Transcriptional regulator
JIX55_RS37375	COG0813	purine-nucleoside phosphorylase activity
JIX55_RS37385	COG3845	ABC transporter
JIX55_RS37395	COG1079	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS37400	COG0737	Belongs to the 5'-nucleotidase family
JIX55_RS37420	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JIX55_RS37425	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JIX55_RS37440	COG2235	arginine
JIX55_RS37445	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JIX55_RS37455	COG1024	Enoyl-CoA hydratase
JIX55_RS37475	COG0529	Catalyzes the synthesis of activated sulfate
JIX55_RS37480	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS37560	COG2815	serine threonine protein kinase
JIX55_RS37560	COG0515	serine threonine protein kinase
JIX55_RS37575	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JIX55_RS37580	COG2192	nodulation
JIX55_RS37590	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JIX55_RS37595	COG0859	PFAM glycosyl transferase family 9
JIX55_RS37605	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS37610	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JIX55_RS37615	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JIX55_RS37615	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JIX55_RS37620	COG0859	PFAM glycosyl transferase family 9
JIX55_RS37705	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JIX55_RS37730	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JIX55_RS37740	COG1404	Belongs to the peptidase S8 family
JIX55_RS37750	COG2205	protein histidine kinase activity
JIX55_RS37775	COG1653	transport
JIX55_RS37780	COG1175	transmembrane transport
JIX55_RS37785	COG0395	ABC-type sugar transport system, permease component
JIX55_RS37790	COG1940	carbohydrate kinase activity
JIX55_RS37795	COG4213	ABC transporter substrate-binding protein
JIX55_RS37805	COG4214	carbohydrate transport
JIX55_RS37810	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JIX55_RS37815	COG0531	amino acid
JIX55_RS37830	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS37830	COG1024	Enoyl-CoA hydratase
JIX55_RS37835	COG0183	Belongs to the thiolase family
JIX55_RS37840	COG3250	beta-galactosidase activity
JIX55_RS37845	COG2182	Extracellular solute-binding protein
JIX55_RS37850	COG1175	transmembrane transport
JIX55_RS37855	COG3833	ABC-type maltose transport systems, permease component
JIX55_RS37860	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JIX55_RS37875	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JIX55_RS37890	COG0446	pyridine nucleotide-disulphide oxidoreductase
JIX55_RS37905	COG3253	May function as heme-dependent peroxidase
JIX55_RS37925	COG3220	belongs to the UPF0276 family
JIX55_RS37945	COG4152	abc transporter atp-binding protein
JIX55_RS37985	COG0745	RESPONSE REGULATOR receiver
JIX55_RS37995	COG0330	HflC and HflK could
JIX55_RS38030	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JIX55_RS38035	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JIX55_RS38055	COG0395	ABC-type sugar transport system, permease component
JIX55_RS38060	COG1175	transmembrane transport
JIX55_RS38070	COG1609	Transcriptional regulator
JIX55_RS38095	COG1335	isochorismatase
JIX55_RS38100	COG3619	membrane
JIX55_RS38110	COG3629	intracellular signal transduction
JIX55_RS38110	COG3903	Transcriptional regulator
JIX55_RS38115	COG3629	intracellular signal transduction
JIX55_RS38115	COG3903	Transcriptional regulator
JIX55_RS38160	COG1609	Transcriptional regulator
JIX55_RS38195	COG2018	Roadblock/LC7 domain
JIX55_RS38205	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS38295	COG1404	Belongs to the peptidase S8 family
JIX55_RS38315	COG0504	CTP synthase activity
JIX55_RS38325	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JIX55_RS38330	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JIX55_RS38335	COG1280	lysine exporter protein (LysE YggA)
JIX55_RS38345	COG3173	Aminoglycoside phosphotransferase
JIX55_RS38440	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JIX55_RS38455	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JIX55_RS38460	COG1116	anion transmembrane transporter activity
JIX55_RS38480	COG0529	Catalyzes the synthesis of activated sulfate
JIX55_RS38485	COG0175	sulfate reduction
JIX55_RS38515	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS38520	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JIX55_RS38535	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS38540	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS38640	COG3507	Belongs to the glycosyl hydrolase 43 family
JIX55_RS38645	COG0395	ABC-type sugar transport system, permease component
JIX55_RS38650	COG1175	transmembrane transport
JIX55_RS38665	COG1522	sequence-specific DNA binding
JIX55_RS38670	COG1609	Transcriptional regulator
JIX55_RS38675	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JIX55_RS38685	COG1175	transmembrane transport
JIX55_RS38690	COG0395	ABC-type sugar transport system, permease component
JIX55_RS38740	COG2040	homocysteine
JIX55_RS38745	COG0531	amino acid
JIX55_RS38770	COG2755	lipolytic protein G-D-S-L family
JIX55_RS38810	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS38840	COG0395	ABC-type sugar transport system, permease component
JIX55_RS38845	COG1175	transmembrane transport
JIX55_RS38860	COG0277	FAD linked oxidase domain protein
JIX55_RS38905	COG1162	GTPase activity
JIX55_RS38965	COG1802	Transcriptional regulator
JIX55_RS38975	COG3835	regulator
JIX55_RS38990	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS39020	COG0673	inositol 2-dehydrogenase activity
JIX55_RS39030	COG1175	transmembrane transport
JIX55_RS39035	COG0395	ABC-type sugar transport system, permease component
JIX55_RS39065	COG0673	inositol 2-dehydrogenase activity
JIX55_RS39070	COG2188	Transcriptional regulator
JIX55_RS39075	COG3962	Belongs to the TPP enzyme family
JIX55_RS39110	COG0641	radical SAM
JIX55_RS39145	COG0515	serine threonine protein kinase
JIX55_RS39150	COG2267	carboxylic ester hydrolase activity
JIX55_RS39180	COG0657	acetylesterase activity
JIX55_RS39185	COG0596	Alpha beta hydrolase
JIX55_RS39190	COG0515	serine threonine protein kinase
JIX55_RS39225	COG0697	spore germination
JIX55_RS39245	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS39255	COG0517	IMP dehydrogenase activity
JIX55_RS39265	COG1295	ribonuclease BN
JIX55_RS39275	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JIX55_RS39280	COG2814	Major facilitator Superfamily
JIX55_RS39285	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JIX55_RS39345	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JIX55_RS39365	COG0745	RESPONSE REGULATOR receiver
JIX55_RS39370	COG5002	protein histidine kinase activity
JIX55_RS39390	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JIX55_RS39400	COG4585	Histidine kinase
JIX55_RS39460	COG2801	Transposase and inactivated derivatives
JIX55_RS39460	COG3415	Transposase
JIX55_RS39495	COG1079	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS39525	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JIX55_RS39535	COG2133	pyrroloquinoline quinone binding
JIX55_RS39625	COG2801	Transposase and inactivated derivatives
JIX55_RS39670	COG3321	synthase
JIX55_RS39670	COG0604	alcohol dehydrogenase
JIX55_RS39675	COG3321	synthase
JIX55_RS39675	COG0604	alcohol dehydrogenase
JIX55_RS39680	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS39730	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JIX55_RS39820	COG2197	response regulator
JIX55_RS39875	COG2226	methyltransferase
JIX55_RS39905	COG4974	Belongs to the 'phage' integrase family
JIX55_RS39910	COG0598	Magnesium transport protein CorA
JIX55_RS39930	COG2197	response regulator
JIX55_RS39935	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JIX55_RS39940	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS39950	COG3960	tartronate-semialdehyde synthase activity
JIX55_RS39965	COG2084	Dehydrogenase
JIX55_RS39970	COG3622	Belongs to the hyi family
JIX55_RS40000	COG2351	hydroxyisourate hydrolase activity
JIX55_RS40035	COG0588	phosphoglycerate mutase activity
JIX55_RS40045	COG0436	Aminotransferase
JIX55_RS40050	COG1733	regulation of RNA biosynthetic process
JIX55_RS40060	COG2304	oxidoreductase activity
JIX55_RS40075	COG2072	flavoprotein involved in K transport
JIX55_RS40085	COG1132	(ABC) transporter
JIX55_RS40095	COG3251	PFAM MbtH domain protein
JIX55_RS40115	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS40145	COG1132	(ABC) transporter
JIX55_RS40150	COG1132	(ABC) transporter
JIX55_RS40160	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JIX55_RS40165	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
JIX55_RS40185	COG0076	glutamate decarboxylase activity
JIX55_RS40200	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JIX55_RS40235	COG0582	viral genome integration into host DNA
JIX55_RS40250	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JIX55_RS40265	COG1414	Transcriptional regulator
JIX55_RS40270	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JIX55_RS40275	COG4266	Belongs to the allantoicase family
JIX55_RS40280	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS40310	COG0667	Aldo Keto reductase
JIX55_RS40315	COG2197	response regulator
JIX55_RS40325	COG0673	inositol 2-dehydrogenase activity
JIX55_RS40330	COG2188	Transcriptional regulator
JIX55_RS40335	COG1940	carbohydrate kinase activity
JIX55_RS40345	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JIX55_RS40355	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JIX55_RS40360	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JIX55_RS40380	COG1126	abc transporter atp-binding protein
JIX55_RS40395	COG0405	Gamma-glutamyltransferase
JIX55_RS40400	COG0542	response to heat
JIX55_RS40430	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JIX55_RS40445	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JIX55_RS40455	COG1953	Uracil, thiamine, allantoin
JIX55_RS40470	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JIX55_RS40480	COG0483	inositol monophosphate 1-phosphatase activity
JIX55_RS40490	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JIX55_RS40495	COG1082	Xylose isomerase domain protein TIM barrel
JIX55_RS40525	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JIX55_RS40530	COG0640	Transcriptional regulator
JIX55_RS40545	COG2197	response regulator
JIX55_RS40560	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JIX55_RS40585	COG1929	Belongs to the glycerate kinase type-1 family
JIX55_RS40595	COG0688	phosphatidylethanolamine metabolic process
JIX55_RS40600	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS40615	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS40615	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS40620	COG0604	alcohol dehydrogenase
JIX55_RS40630	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS40645	COG0596	Alpha beta hydrolase
JIX55_RS40675	COG2362	D-Aminopeptidase
JIX55_RS40680	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JIX55_RS40685	COG0823	Involved in the tonB-independent uptake of proteins
JIX55_RS40685	COG4946	Tricorn protease homolog
JIX55_RS40685	COG1506	peptidase
JIX55_RS40690	COG1619	proteins homologs of microcin C7 resistance protein MccF
JIX55_RS40700	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS40715	COG4221	oxidoreductase activity
JIX55_RS40720	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS40730	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JIX55_RS40735	COG1793	dna ligase
JIX55_RS40735	COG3285	dna ligase
JIX55_RS40795	COG2226	methyltransferase
JIX55_RS40805	COG0488	(ABC) transporter
JIX55_RS40830	COG0693	protein deglycase activity
JIX55_RS40840	COG1982	Orn Lys Arg decarboxylase major
JIX55_RS40845	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JIX55_RS40885	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JIX55_RS40925	COG0028	Belongs to the TPP enzyme family
JIX55_RS40965	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JIX55_RS40995	COG1752	Esterase of the alpha-beta hydrolase superfamily
JIX55_RS41000	COG0443	Heat shock 70 kDa protein
JIX55_RS41025	COG2154	pterin-4-alpha-carbinolamine dehydratase
JIX55_RS41030	COG2226	methyltransferase
JIX55_RS41040	COG3401	FG-GAP repeat protein
JIX55_RS41055	COG4733	cellulase activity
JIX55_RS41055	COG5297	Belongs to the glycosyl hydrolase family 6
JIX55_RS41060	COG5297	Belongs to the glycosyl hydrolase family 6
JIX55_RS41075	COG4221	oxidoreductase activity
JIX55_RS41080	COG0656	L-ascorbic acid biosynthetic process
JIX55_RS41115	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JIX55_RS41130	COG3383	formate dehydrogenase (NAD+) activity
JIX55_RS41135	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JIX55_RS41145	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JIX55_RS41155	COG1940	carbohydrate kinase activity
JIX55_RS41160	COG1129	ABC transporter
JIX55_RS41165	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS41175	COG0673	inositol 2-dehydrogenase activity
JIX55_RS41185	COG3507	Belongs to the glycosyl hydrolase 43 family
JIX55_RS41230	COG2223	nitrite transmembrane transporter activity
JIX55_RS41240	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS41250	COG0045	succinate-CoA ligase (ADP-forming) activity
JIX55_RS41260	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS41280	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JIX55_RS41305	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS41305	COG2319	Wd-40 repeat
JIX55_RS41315	COG0673	inositol 2-dehydrogenase activity
JIX55_RS41320	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS41330	COG1183	phosphatidylcholine synthase activity
JIX55_RS41345	COG0438	transferase activity, transferring glycosyl groups
JIX55_RS41365	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JIX55_RS41390	COG0477	Major facilitator Superfamily
JIX55_RS41400	COG3467	pyridoxamine 5'-phosphate
JIX55_RS41410	COG0477	Major facilitator Superfamily
JIX55_RS41420	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JIX55_RS41425	COG1082	Xylose isomerase domain protein TIM barrel
JIX55_RS41425	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JIX55_RS41450	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JIX55_RS41465	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JIX55_RS41480	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JIX55_RS41480	COG0515	serine threonine protein kinase
JIX55_RS41485	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS41490	COG3119	arylsulfatase activity
JIX55_RS41540	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JIX55_RS41545	COG3250	beta-galactosidase activity
JIX55_RS41550	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JIX55_RS41570	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JIX55_RS41575	COG1349	DNA-binding transcription factor activity
JIX55_RS41600	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JIX55_RS41655	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JIX55_RS41660	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JIX55_RS41670	COG1414	Transcriptional regulator
JIX55_RS41700	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS41730	COG4948	Mandelate Racemase Muconate Lactonizing
JIX55_RS41740	COG1609	Transcriptional regulator
JIX55_RS41750	COG1175	transmembrane transport
JIX55_RS41755	COG0395	ABC-type sugar transport system, permease component
JIX55_RS41760	COG0352	thiamine-phosphate diphosphorylase activity
JIX55_RS41770	COG2706	6-phosphogluconolactonase activity
JIX55_RS41800	COG0321	lipoyl(octanoyl) transferase activity
JIX55_RS41820	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS41830	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JIX55_RS41835	COG3511	phospholipase C
JIX55_RS41865	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JIX55_RS41870	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JIX55_RS41875	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS41880	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS41885	COG0183	Belongs to the thiolase family
JIX55_RS41905	COG1470	cell adhesion involved in biofilm formation
JIX55_RS41915	COG1793	dna ligase
JIX55_RS41985	COG1834	amidinotransferase
JIX55_RS41990	COG0488	(ABC) transporter
JIX55_RS42010	COG1515	deoxyribonuclease V activity
JIX55_RS42020	COG3268	Saccharopine dehydrogenase
JIX55_RS42030	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS42035	COG0183	Belongs to the thiolase family
JIX55_RS42040	COG1024	Enoyl-CoA hydratase
JIX55_RS42040	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS42055	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JIX55_RS42065	COG2936	dipeptidyl-peptidase activity
JIX55_RS42075	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JIX55_RS42090	COG0488	(ABC) transporter
JIX55_RS42095	COG2183	response to ionizing radiation
JIX55_RS42120	COG1024	Enoyl-CoA hydratase
JIX55_RS42130	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JIX55_RS42160	COG0371	Dehydrogenase
JIX55_RS42180	COG1134	teichoic acid transport
JIX55_RS42185	COG1562	ergosterol biosynthetic process
JIX55_RS42195	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JIX55_RS42205	COG1657	PFAM Prenyltransferase squalene oxidase
JIX55_RS42220	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
JIX55_RS42225	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JIX55_RS42270	COG2755	lipolytic protein G-D-S-L family
JIX55_RS42275	COG1309	transcriptional regulator
JIX55_RS42280	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JIX55_RS42320	COG1063	alcohol dehydrogenase
JIX55_RS42325	COG0156	8-amino-7-oxononanoate synthase activity
JIX55_RS42330	COG0583	DNA-binding transcription factor activity
JIX55_RS42350	COG3958	Transketolase
JIX55_RS42355	COG3959	Transketolase, thiamine diphosphate binding domain
JIX55_RS42425	COG3938	Belongs to the proline racemase family
JIX55_RS42430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS42435	COG0446	pyridine nucleotide-disulphide oxidoreductase
JIX55_RS42445	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JIX55_RS42450	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JIX55_RS42455	COG4221	oxidoreductase activity
JIX55_RS42465	COG3387	PFAM Glycoside hydrolase 15-related
JIX55_RS42470	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JIX55_RS42485	COG1126	abc transporter atp-binding protein
JIX55_RS42490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JIX55_RS42500	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS42505	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS42520	COG2267	carboxylic ester hydrolase activity
JIX55_RS42600	COG1881	PFAM PEBP family protein
JIX55_RS42605	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JIX55_RS42605	COG1796	DNA polymerase
JIX55_RS42630	COG0596	Alpha beta hydrolase
JIX55_RS42640	COG3284	Transcriptional regulator
JIX55_RS42650	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS42655	COG1454	alcohol dehydrogenase
JIX55_RS42680	COG1192	Involved in chromosome partitioning
JIX55_RS42690	COG1846	Transcriptional regulator
JIX55_RS42700	COG2838	Isocitrate dehydrogenase
JIX55_RS42705	COG0668	transmembrane transport
JIX55_RS42715	COG1132	(ABC) transporter
JIX55_RS42745	COG2824	Alkylphosphonate utilization operon protein PhnA
JIX55_RS42765	COG3250	beta-galactosidase activity
JIX55_RS42770	COG2211	Major facilitator Superfamily
JIX55_RS42775	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS42780	COG3250	beta-galactosidase activity
JIX55_RS42785	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS42795	COG1309	transcriptional regulator
JIX55_RS42810	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JIX55_RS42865	COG1401	restriction endodeoxyribonuclease activity
JIX55_RS42895	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
JIX55_RS42910	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JIX55_RS42930	COG0297	glycogen (starch) synthase activity
JIX55_RS42935	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JIX55_RS42975	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JIX55_RS43005	COG0726	polysaccharide deacetylase
JIX55_RS43050	COG0583	DNA-binding transcription factor activity
JIX55_RS43060	COG1053	succinate dehydrogenase
JIX55_RS43065	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JIX55_RS43085	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS43090	COG3507	Belongs to the glycosyl hydrolase 43 family
JIX55_RS43105	COG1477	protein flavinylation
JIX55_RS43120	COG0745	RESPONSE REGULATOR receiver
JIX55_RS43125	COG2205	protein histidine kinase activity
JIX55_RS43130	COG1063	alcohol dehydrogenase
JIX55_RS43135	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS43140	COG2755	lipolytic protein G-D-S-L family
JIX55_RS43150	COG0745	RESPONSE REGULATOR receiver
JIX55_RS43175	COG2072	flavoprotein involved in K transport
JIX55_RS43190	COG5006	permease, DMT superfamily
JIX55_RS43200	COG2186	Transcriptional regulator
JIX55_RS43205	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JIX55_RS43210	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JIX55_RS43215	COG2828	Protein conserved in bacteria
JIX55_RS43225	COG0657	acetylesterase activity
JIX55_RS43245	COG3360	Dodecin
JIX55_RS43250	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
JIX55_RS43255	COG0121	glutamine amidotransferase
JIX55_RS43260	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JIX55_RS43265	COG3572	ergothioneine biosynthetic process
JIX55_RS43280	COG2268	Band 7 protein
JIX55_RS43310	COG1609	Transcriptional regulator
JIX55_RS43320	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JIX55_RS43330	COG0242	peptide deformylase activity
JIX55_RS43370	COG0667	Aldo Keto reductase
JIX55_RS43375	COG1408	metallophosphoesterase
JIX55_RS43380	COG0656	L-ascorbic acid biosynthetic process
JIX55_RS43390	COG0667	Aldo Keto reductase
JIX55_RS43405	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS43410	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS43415	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS43435	COG4221	oxidoreductase activity
JIX55_RS43480	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS43510	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS43515	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS43540	COG1609	Transcriptional regulator
JIX55_RS43545	COG0747	negative chemotaxis
JIX55_RS43550	COG0601	transmembrane transport
JIX55_RS43555	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS43560	COG0444	Belongs to the ABC transporter superfamily
JIX55_RS43565	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS43625	COG1408	metallophosphoesterase
JIX55_RS43630	COG3693	PFAM glycoside hydrolase, family 10
JIX55_RS43675	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JIX55_RS43680	COG2151	metal-sulfur cluster biosynthetic enzyme
JIX55_RS43685	COG3396	Phenylacetate-CoA oxygenase
JIX55_RS43690	COG3460	Phenylacetate-CoA oxygenase
JIX55_RS43695	COG3396	Phenylacetate-CoA oxygenase
JIX55_RS43700	COG1024	Enoyl-CoA hydratase
JIX55_RS43705	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS43710	COG1024	Enoyl-CoA hydratase
JIX55_RS43715	COG0183	Belongs to the thiolase family
JIX55_RS43720	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS43740	COG1522	sequence-specific DNA binding
JIX55_RS43750	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JIX55_RS43785	COG2326	polyphosphate kinase activity
JIX55_RS43790	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
JIX55_RS43795	COG1063	alcohol dehydrogenase
JIX55_RS43805	COG3795	YCII-related domain
JIX55_RS43810	COG4941	Belongs to the sigma-70 factor family
JIX55_RS43815	COG1082	Xylose isomerase domain protein TIM barrel
JIX55_RS43830	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JIX55_RS43835	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS43845	COG1309	transcriptional regulator
JIX55_RS43850	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS43865	COG4689	acetoacetate decarboxylase
JIX55_RS43880	COG0174	glutamine synthetase
JIX55_RS43885	COG2124	cytochrome p450
JIX55_RS43890	COG1609	Transcriptional regulator
JIX55_RS43900	COG2207	Transcriptional regulator
JIX55_RS43900	COG3708	Transcriptional regulator
JIX55_RS43905	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JIX55_RS43910	COG1082	Xylose isomerase domain protein TIM barrel
JIX55_RS43915	COG0673	inositol 2-dehydrogenase activity
JIX55_RS43920	COG1082	Xylose isomerase domain protein TIM barrel
JIX55_RS43930	COG1609	Transcriptional regulator
JIX55_RS43945	COG1733	regulation of RNA biosynthetic process
JIX55_RS43955	COG1609	Transcriptional regulator
JIX55_RS43970	COG0673	inositol 2-dehydrogenase activity
JIX55_RS43985	COG1063	alcohol dehydrogenase
JIX55_RS43990	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS44005	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS44025	COG1573	uracil-dna glycosylase
JIX55_RS44035	COG1556	Lactate utilization protein
JIX55_RS44040	COG1139	Iron-sulfur cluster binding protein
JIX55_RS44045	COG0247	lactate metabolic process
JIX55_RS44050	COG1070	Carbohydrate kinase
JIX55_RS44055	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS44055	COG3347	Dehydrogenase
JIX55_RS44065	COG1129	ABC transporter
JIX55_RS44075	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS44080	COG1879	ABC-type sugar transport system periplasmic component
JIX55_RS44095	COG1609	Transcriptional regulator
JIX55_RS44120	COG1357	PFAM Pentapeptide repeats (8 copies)
JIX55_RS44130	COG1309	transcriptional regulator
JIX55_RS44135	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JIX55_RS44140	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JIX55_RS44145	COG0475	glutathione-regulated potassium exporter activity
JIX55_RS44155	COG2706	6-phosphogluconolactonase activity
JIX55_RS44200	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JIX55_RS44200	COG1796	DNA polymerase
JIX55_RS44220	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JIX55_RS44235	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS44270	COG0435	Glutathione S-transferase
JIX55_RS44295	COG1846	Transcriptional regulator
JIX55_RS44315	COG1129	ABC transporter
JIX55_RS44330	COG2197	response regulator
JIX55_RS44350	COG2197	response regulator
JIX55_RS44360	COG2207	Transcriptional regulator
JIX55_RS44370	COG3250	beta-galactosidase activity
JIX55_RS44425	COG0248	Ppx GppA phosphatase
JIX55_RS44435	COG0747	negative chemotaxis
JIX55_RS44440	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS44470	COG1132	(ABC) transporter
JIX55_RS44505	COG2197	response regulator
JIX55_RS44510	COG1132	(ABC) transporter
JIX55_RS44515	COG1132	(ABC) transporter
JIX55_RS44525	COG0515	serine threonine protein kinase
JIX55_RS44570	COG1132	(ABC) transporter
JIX55_RS44575	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JIX55_RS44580	COG1937	Protein conserved in bacteria
JIX55_RS44630	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JIX55_RS44635	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS44650	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JIX55_RS44665	COG2182	Extracellular solute-binding protein
JIX55_RS44670	COG0395	ABC-type sugar transport system, permease component
JIX55_RS44675	COG1175	transmembrane transport
JIX55_RS44680	COG1846	Transcriptional regulator
JIX55_RS44680	COG1940	carbohydrate kinase activity
JIX55_RS44725	COG2197	response regulator
JIX55_RS44735	COG1136	(ABC) transporter
JIX55_RS44770	COG1940	carbohydrate kinase activity
JIX55_RS44780	COG1175	transmembrane transport
JIX55_RS44785	COG0395	ABC-type sugar transport system, permease component
JIX55_RS44825	COG2340	Cysteine-rich secretory protein family
JIX55_RS44865	COG1228	amidohydrolase
JIX55_RS44890	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS44940	COG3290	protein histidine kinase activity
JIX55_RS44945	COG4565	transcriptional regulatory protein
JIX55_RS44960	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JIX55_RS44990	COG0009	L-threonylcarbamoyladenylate synthase
JIX55_RS45005	COG0667	Aldo Keto reductase
JIX55_RS45025	COG0673	inositol 2-dehydrogenase activity
JIX55_RS45030	COG3290	protein histidine kinase activity
JIX55_RS45060	COG2409	Drug exporters of the RND superfamily
JIX55_RS45080	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS45135	COG0395	ABC-type sugar transport system, permease component
JIX55_RS45145	COG1653	transport
JIX55_RS45160	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JIX55_RS45170	COG1024	Enoyl-CoA hydratase
JIX55_RS45185	COG0181	hydroxymethylbilane synthase activity
JIX55_RS45225	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS45270	COG0513	Belongs to the DEAD box helicase family
JIX55_RS45320	COG1940	carbohydrate kinase activity
JIX55_RS45320	COG1846	Transcriptional regulator
JIX55_RS45325	COG3345	alpha-galactosidase
JIX55_RS45380	COG0187	DNA topoisomerase II activity
JIX55_RS45415	COG1595	DNA-templated transcription, initiation
JIX55_RS45425	COG1131	(ABC) transporter
JIX55_RS45450	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JIX55_RS45455	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JIX55_RS45465	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS45475	COG3396	Phenylacetate-CoA oxygenase
JIX55_RS45485	COG3396	Phenylacetate-CoA oxygenase
JIX55_RS45490	COG2151	metal-sulfur cluster biosynthetic enzyme
JIX55_RS45495	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JIX55_RS45500	COG3483	tryptophan 2,3-dioxygenase activity
JIX55_RS45515	COG1595	DNA-templated transcription, initiation
JIX55_RS45520	COG0604	alcohol dehydrogenase
JIX55_RS45550	COG4585	Histidine kinase
JIX55_RS45555	COG2197	response regulator
JIX55_RS45560	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS45570	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS45585	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JIX55_RS45595	COG0367	asparagine synthase
JIX55_RS45635	COG2045	Belongs to the ComB family
JIX55_RS45650	COG1609	Transcriptional regulator
JIX55_RS45660	COG3250	beta-galactosidase activity
JIX55_RS45725	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS45730	COG1454	alcohol dehydrogenase
JIX55_RS45760	COG1309	transcriptional regulator
JIX55_RS45785	COG0583	DNA-binding transcription factor activity
JIX55_RS45790	COG0183	Belongs to the thiolase family
JIX55_RS45800	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JIX55_RS45860	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS45880	COG1309	transcriptional regulator
JIX55_RS45900	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS45910	COG1024	Enoyl-CoA hydratase
JIX55_RS45910	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS45945	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS45950	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JIX55_RS45955	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS45995	COG0237	dephospho-CoA kinase activity
JIX55_RS46010	COG0395	ABC-type sugar transport system, permease component
JIX55_RS46025	COG1609	Transcriptional regulator
JIX55_RS46045	COG1063	alcohol dehydrogenase
JIX55_RS46075	COG0655	NAD(P)H dehydrogenase (quinone) activity
JIX55_RS46080	COG1073	alpha beta
JIX55_RS46090	COG2267	carboxylic ester hydrolase activity
JIX55_RS46095	COG1309	transcriptional regulator
JIX55_RS46110	COG0745	RESPONSE REGULATOR receiver
JIX55_RS46115	COG2205	protein histidine kinase activity
JIX55_RS46130	COG3350	monooxygenase activity
JIX55_RS46160	COG1063	alcohol dehydrogenase
JIX55_RS46165	COG0459	protein refolding
JIX55_RS46175	COG0803	Belongs to the bacterial solute-binding protein 9 family
JIX55_RS46180	COG1121	(ABC) transporter
JIX55_RS46185	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JIX55_RS46205	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS46210	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS46215	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS46220	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS46250	COG0402	S-adenosylhomocysteine deaminase activity
JIX55_RS46260	COG0667	Aldo Keto reductase
JIX55_RS46265	COG1309	transcriptional regulator
JIX55_RS46290	COG1309	transcriptional regulator
JIX55_RS46315	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS46355	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JIX55_RS46370	COG0492	ferredoxin-NADP+ reductase activity
JIX55_RS46385	COG0243	molybdopterin cofactor binding
JIX55_RS46390	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS46410	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JIX55_RS46415	COG2409	Drug exporters of the RND superfamily
JIX55_RS46445	COG2267	carboxylic ester hydrolase activity
JIX55_RS46465	COG0076	glutamate decarboxylase activity
JIX55_RS46495	COG4221	oxidoreductase activity
JIX55_RS46505	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS46520	COG1902	pentaerythritol trinitrate reductase activity
JIX55_RS46525	COG1309	transcriptional regulator
JIX55_RS46550	COG2267	carboxylic ester hydrolase activity
JIX55_RS46555	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS46555	COG3321	synthase
JIX55_RS46555	COG0604	alcohol dehydrogenase
JIX55_RS46595	COG2755	lipolytic protein G-D-S-L family
JIX55_RS46595	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JIX55_RS46605	COG4585	Histidine kinase
JIX55_RS46615	COG1131	(ABC) transporter
JIX55_RS46630	COG0515	serine threonine protein kinase
JIX55_RS46650	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JIX55_RS46655	COG2070	2-Nitropropane dioxygenase
JIX55_RS46670	COG2366	antibiotic biosynthetic process
JIX55_RS46675	COG0318	PFAM AMP-dependent synthetase and ligase
JIX55_RS46680	COG2267	carboxylic ester hydrolase activity
JIX55_RS46745	COG4191	Histidine kinase
JIX55_RS46775	COG3594	Acyltransferase
JIX55_RS46835	COG0745	RESPONSE REGULATOR receiver
JIX55_RS46850	COG0667	Aldo Keto reductase
JIX55_RS46870	COG0346	lactoylglutathione lyase activity
JIX55_RS46875	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JIX55_RS46885	COG0583	DNA-binding transcription factor activity
JIX55_RS46890	COG0667	Aldo Keto reductase
JIX55_RS46910	COG1716	ATPase activity
JIX55_RS46910	COG0842	Transport permease protein
JIX55_RS46910	COG1131	(ABC) transporter
JIX55_RS46925	COG0698	ribose 5-phosphate isomerase
JIX55_RS46935	COG0477	Major facilitator Superfamily
JIX55_RS46950	COG1132	(ABC) transporter
JIX55_RS46955	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JIX55_RS46970	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS46975	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JIX55_RS46980	COG1120	ATPase activity
JIX55_RS46985	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JIX55_RS46990	COG3486	L-lysine 6-monooxygenase (NADPH) activity
JIX55_RS47005	COG4608	Belongs to the ABC transporter superfamily
JIX55_RS47015	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JIX55_RS47040	COG2318	DinB family
JIX55_RS47050	COG0740	serine-type endopeptidase activity
JIX55_RS47055	COG0740	serine-type endopeptidase activity
JIX55_RS47095	COG0328	RNA-DNA hybrid ribonuclease activity
JIX55_RS47100	COG0726	polysaccharide deacetylase
JIX55_RS47105	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS47105	COG2319	Wd-40 repeat
JIX55_RS47145	COG0494	nUDIX hydrolase
JIX55_RS47160	COG0477	Major facilitator Superfamily
JIX55_RS47165	COG0667	Aldo Keto reductase
JIX55_RS47180	COG0697	spore germination
JIX55_RS47185	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JIX55_RS47190	COG0251	oxidation-reduction process
JIX55_RS47195	COG0583	DNA-binding transcription factor activity
JIX55_RS47265	COG2172	sigma factor antagonist activity
JIX55_RS47270	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS47275	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS47290	COG1191	sigma factor activity
JIX55_RS47320	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
JIX55_RS47330	COG0456	acetyltransferase
JIX55_RS47350	COG3401	FG-GAP repeat protein
JIX55_RS47375	COG4172	Belongs to the ABC transporter superfamily
JIX55_RS47380	COG0444	Belongs to the ABC transporter superfamily
JIX55_RS47390	COG0747	negative chemotaxis
JIX55_RS47395	COG1609	Transcriptional regulator
JIX55_RS47405	COG3250	beta-galactosidase activity
JIX55_RS47410	COG1073	alpha beta
JIX55_RS47415	COG2814	Major facilitator Superfamily
JIX55_RS47435	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS47435	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JIX55_RS47435	COG1703	isobutyryl-CoA mutase activity
JIX55_RS47445	COG0183	Belongs to the thiolase family
JIX55_RS47460	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS47475	COG1063	alcohol dehydrogenase
JIX55_RS47480	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS47485	COG1129	ABC transporter
JIX55_RS47495	COG4638	Rieske (2fe-2S)
JIX55_RS47510	COG2130	NADP-dependent
JIX55_RS47525	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS47530	COG4638	Rieske (2fe-2S)
JIX55_RS47540	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JIX55_RS47545	COG0022	dehydrogenase e1 component
JIX55_RS47550	COG0508	dehydrogenase complex catalyzes the overall conversion of
JIX55_RS47560	COG1309	transcriptional regulator
JIX55_RS47565	COG0300	oxidoreductase activity
JIX55_RS47570	COG0183	Belongs to the thiolase family
JIX55_RS47580	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS47585	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JIX55_RS47585	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS47595	COG1024	Enoyl-CoA hydratase
JIX55_RS47625	COG1063	alcohol dehydrogenase
JIX55_RS47630	COG0395	ABC-type sugar transport system, permease component
JIX55_RS47645	COG1349	DNA-binding transcription factor activity
JIX55_RS47650	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS47660	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS47665	COG0596	Alpha beta hydrolase
JIX55_RS47680	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JIX55_RS47695	COG1802	Transcriptional regulator
JIX55_RS47705	COG0726	polysaccharide deacetylase
JIX55_RS47725	COG3655	Transcriptional regulator
JIX55_RS47735	COG1473	amidohydrolase
JIX55_RS47785	COG1090	epimerase
JIX55_RS47790	COG0202	RNA polymerase activity
JIX55_RS47815	COG1175	transmembrane transport
JIX55_RS47820	COG0395	ABC-type sugar transport system, permease component
JIX55_RS47825	COG3507	Belongs to the glycosyl hydrolase 43 family
JIX55_RS47830	COG3940	Belongs to the glycosyl hydrolase 43 family
JIX55_RS47835	COG0640	Transcriptional regulator
JIX55_RS47920	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS48005	COG0604	alcohol dehydrogenase
JIX55_RS48050	COG1470	cell adhesion involved in biofilm formation
JIX55_RS48050	COG0366	Alpha amylase catalytic
JIX55_RS48065	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JIX55_RS48080	COG0395	ABC-type sugar transport system, permease component
JIX55_RS48085	COG1349	DNA-binding transcription factor activity
JIX55_RS48235	COG0395	ABC-type sugar transport system, permease component
JIX55_RS48305	COG0494	nUDIX hydrolase
JIX55_RS48325	COG0300	oxidoreductase activity
JIX55_RS48405	COG0667	Aldo Keto reductase
JIX55_RS48410	COG0667	Aldo Keto reductase
JIX55_RS48425	COG1408	metallophosphoesterase
JIX55_RS48445	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS48455	COG1309	transcriptional regulator
JIX55_RS48460	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS48480	COG2080	2 iron, 2 sulfur cluster binding
JIX55_RS48485	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JIX55_RS48490	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JIX55_RS48500	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS48510	COG0667	Aldo Keto reductase
JIX55_RS48525	COG2378	regulation of single-species biofilm formation
JIX55_RS48535	COG0667	Aldo Keto reductase
JIX55_RS48575	COG0667	Aldo Keto reductase
JIX55_RS48580	COG0667	Aldo Keto reductase
JIX55_RS48605	COG0673	inositol 2-dehydrogenase activity
JIX55_RS48635	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
JIX55_RS48640	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
JIX55_RS48645	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
JIX55_RS48695	COG3655	Transcriptional regulator
JIX55_RS48710	COG2193	ferroxidase activity
JIX55_RS48725	COG3842	ATPase activity
JIX55_RS48750	COG3485	protocatechuate 3,4-dioxygenase
JIX55_RS48770	COG1349	DNA-binding transcription factor activity
JIX55_RS48795	COG2124	cytochrome p450
JIX55_RS48935	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JIX55_RS48960	COG1335	isochorismatase
JIX55_RS48995	COG4585	Histidine kinase
JIX55_RS49000	COG2197	response regulator
JIX55_RS49030	COG0515	serine threonine protein kinase
JIX55_RS49030	COG2815	serine threonine protein kinase
JIX55_RS49050	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JIX55_RS49060	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS49070	COG2249	NAD(P)H dehydrogenase (quinone) activity
JIX55_RS49090	COG1959	2 iron, 2 sulfur cluster binding
JIX55_RS49095	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS49105	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JIX55_RS49120	COG1309	transcriptional regulator
JIX55_RS49140	COG2124	cytochrome p450
JIX55_RS49165	COG0583	DNA-binding transcription factor activity
JIX55_RS49175	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS49180	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS49185	COG0277	FAD linked oxidase domain protein
JIX55_RS49235	COG3848	Pyruvate phosphate dikinase
JIX55_RS49235	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS49245	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JIX55_RS49250	COG1414	Transcriptional regulator
JIX55_RS49265	COG0738	Major facilitator superfamily
JIX55_RS49275	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS49280	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JIX55_RS49285	COG3958	Transketolase
JIX55_RS49290	COG3959	Transketolase, thiamine diphosphate binding domain
JIX55_RS49305	COG4677	pectinesterase activity
JIX55_RS49325	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS49340	COG1024	Enoyl-CoA hydratase
JIX55_RS49340	COG1250	3-hydroxyacyl-CoA dehydrogenase
JIX55_RS49360	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS49370	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS49375	COG1309	transcriptional regulator
JIX55_RS49380	COG0667	Aldo Keto reductase
JIX55_RS49385	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS49420	COG1278	Cold shock
JIX55_RS49425	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS49475	COG1129	ABC transporter
JIX55_RS49485	COG1172	Belongs to the binding-protein-dependent transport system permease family
JIX55_RS49495	COG3958	Transketolase
JIX55_RS49500	COG3959	Transketolase, thiamine diphosphate binding domain
JIX55_RS49525	COG1902	pentaerythritol trinitrate reductase activity
JIX55_RS49530	COG4221	oxidoreductase activity
JIX55_RS49550	COG2255	four-way junction helicase activity
JIX55_RS49565	COG2315	Protein conserved in bacteria
JIX55_RS49580	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS49590	COG1309	transcriptional regulator
JIX55_RS49640	COG2319	Wd-40 repeat
JIX55_RS49640	COG4249	Peptidase C14 caspase catalytic subunit p20
JIX55_RS49675	COG2326	polyphosphate kinase activity
JIX55_RS49680	COG0045	succinate-CoA ligase (ADP-forming) activity
JIX55_RS49680	COG1042	CoA-binding domain protein
JIX55_RS49680	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JIX55_RS49685	COG0517	IMP dehydrogenase activity
JIX55_RS49685	COG0516	GMP reductase activity
JIX55_RS49700	COG0517	IMP dehydrogenase activity
JIX55_RS49700	COG0516	GMP reductase activity
JIX55_RS49715	COG0549	Belongs to the carbamate kinase family
JIX55_RS49735	COG1366	Belongs to the anti-sigma-factor antagonist family
JIX55_RS49765	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JIX55_RS49785	COG1012	belongs to the aldehyde dehydrogenase family
JIX55_RS49785	COG1454	alcohol dehydrogenase
JIX55_RS49835	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JIX55_RS49835	COG0574	Belongs to the PEP-utilizing enzyme family
JIX55_RS49855	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JIX55_RS49885	COG0659	secondary active sulfate transmembrane transporter activity
JIX55_RS49895	COG2824	Alkylphosphonate utilization operon protein PhnA
JIX55_RS49915	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JIX55_RS49920	COG1140	nitrate reductase beta subunit
JIX55_RS49960	COG0471	metal ion transport
JIX55_RS50010	COG4584	PFAM Integrase catalytic
JIX55_RS50020	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JIX55_RS50025	COG1960	acyl-CoA dehydrogenase activity
JIX55_RS50035	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JIX55_RS50065	COG0583	DNA-binding transcription factor activity
JIX55_RS50070	COG1063	alcohol dehydrogenase
JIX55_RS50085	COG0148	phosphopyruvate hydratase activity
JIX55_RS50095	COG1609	Transcriptional regulator
JIX55_RS50100	COG0179	Fumarylacetoacetate (FAA) hydrolase
JIX55_RS50110	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JIX55_RS50255	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS50265	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JIX55_RS50295	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JIX55_RS50305	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JIX55_RS50310	COG1116	anion transmembrane transporter activity
JIX55_RS50310	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JIX55_RS50335	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JIX55_RS50340	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS50365	COG0745	RESPONSE REGULATOR receiver
JIX55_RS50370	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JIX55_RS50380	COG0431	NADPH-dependent FMN reductase
JIX55_RS50405	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS50415	COG1028	Short-chain dehydrogenase reductase Sdr
JIX55_RS50420	COG2409	Drug exporters of the RND superfamily
JIX55_RS50425	COG4585	Histidine kinase
JIX55_RS50430	COG2197	response regulator
JIX55_RS50490	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JIX55_RS50585	COG3547	Transposase (IS116 IS110 IS902 family)
JIX55_RS50670	COG2815	serine threonine protein kinase
JIX55_RS50670	COG0515	serine threonine protein kinase
JIX55_RS50720	COG0142	geranyltranstransferase activity
JIX55_RS50730	COG0156	8-amino-7-oxononanoate synthase activity