locus-tag class description LLJ08_RS00005 PF00308 Bacterial dnaA protein LLJ08_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix LLJ08_RS00005 PF11638 DnaA N-terminal domain LLJ08_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LLJ08_RS00010 PF02767 DNA polymerase III beta subunit, central domain LLJ08_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LLJ08_RS00015 PF02463 RecF/RecN/SMC N terminal domain LLJ08_RS00020 PF01751 Toprim domain LLJ08_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus LLJ08_RS00020 PF00204 DNA gyrase B LLJ08_RS00020 PF18053 DNA gyrase B subunit insert domain LLJ08_RS00025 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS00025 PF13192 Thioredoxin domain LLJ08_RS00030 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS00045 PF05746 DALR anticodon binding domain LLJ08_RS00045 PF02092 Glycyl-tRNA synthetase beta subunit LLJ08_RS00050 PF02091 Glycyl-tRNA synthetase alpha subunit LLJ08_RS00055 PF03352 Methyladenine glycosylase LLJ08_RS00075 PF00005 ABC transporter LLJ08_RS00080 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS00085 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS00090 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLJ08_RS00095 PF02254 TrkA-N domain LLJ08_RS00095 PF02080 TrkA-C domain LLJ08_RS00100 PF01189 16S rRNA methyltransferase RsmB/F LLJ08_RS00100 PF01029 NusB family LLJ08_RS00105 PF02911 Formyl transferase, C-terminal domain LLJ08_RS00105 PF00551 Formyl transferase LLJ08_RS00110 PF01327 Polypeptide deformylase LLJ08_RS00115 PF01476 LysM domain LLJ08_RS00120 PF02481 DNA recombination-mediator protein A LLJ08_RS00120 PF17782 DprA winged helix domain LLJ08_RS00125 PF01300 Telomere recombination LLJ08_RS00130 PF00107 Zinc-binding dehydrogenase LLJ08_RS00130 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS00135 PF01218 Coproporphyrinogen III oxidase LLJ08_RS00140 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LLJ08_RS00140 PF08501 Shikimate dehydrogenase substrate binding domain LLJ08_RS00140 PF01488 Shikimate / quinate 5-dehydrogenase LLJ08_RS00155 PF00768 D-alanyl-D-alanine carboxypeptidase LLJ08_RS00190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LLJ08_RS00190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LLJ08_RS00190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LLJ08_RS00190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LLJ08_RS00205 PF00072 Response regulator receiver domain LLJ08_RS00205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS00205 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS00205 PF08448 PAS fold LLJ08_RS00205 PF13188 PAS domain LLJ08_RS00210 PF03466 LysR substrate binding domain LLJ08_RS00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS00215 PF04239 Protein of unknown function (DUF421) LLJ08_RS00245 PF00664 ABC transporter transmembrane region LLJ08_RS00245 PF00005 ABC transporter LLJ08_RS00250 PF03575 Peptidase family S51 LLJ08_RS00280 PF02798 Glutathione S-transferase, N-terminal domain LLJ08_RS00285 PF01381 Helix-turn-helix LLJ08_RS00290 PF07804 HipA-like C-terminal domain LLJ08_RS00290 PF13657 HipA N-terminal domain LLJ08_RS00310 PF00290 Tryptophan synthase alpha chain LLJ08_RS00315 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS00320 PF03466 LysR substrate binding domain LLJ08_RS00330 PF16363 GDP-mannose 4,6 dehydratase LLJ08_RS00340 PF03275 UDP-galactopyranose mutase LLJ08_RS00350 PF00005 ABC transporter LLJ08_RS00350 PF00664 ABC transporter transmembrane region LLJ08_RS00355 PF13619 KTSC domain LLJ08_RS00360 PF07311 Dodecin LLJ08_RS00365 PF00999 Sodium/hydrogen exchanger family LLJ08_RS00370 PF00296 Luciferase-like monooxygenase LLJ08_RS00410 PF16868 NMT1-like family LLJ08_RS00425 PF12706 Beta-lactamase superfamily domain LLJ08_RS00435 PF07969 Amidohydrolase family LLJ08_RS00440 PF00005 ABC transporter LLJ08_RS00445 PF00005 ABC transporter LLJ08_RS00450 PF06007 Phosphonate metabolism protein PhnJ LLJ08_RS00455 PF05861 Bacterial phosphonate metabolism protein (PhnI) LLJ08_RS00465 PF06754 Phosphonate metabolism protein PhnG LLJ08_RS00470 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS00470 PF07702 UTRA domain LLJ08_RS00475 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS00485 PF00005 ABC transporter LLJ08_RS00490 PF00106 short chain dehydrogenase LLJ08_RS00495 PF16957 Malonate decarboxylase, alpha subunit, transporter LLJ08_RS00500 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LLJ08_RS00505 PF06857 Malonate decarboxylase delta subunit (MdcD) LLJ08_RS00510 PF01039 Carboxyl transferase domain LLJ08_RS00520 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG LLJ08_RS00525 PF00698 Acyl transferase domain LLJ08_RS00540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS00540 PF00672 HAMP domain LLJ08_RS00540 PF16591 Helical bimodular sensor domain LLJ08_RS00545 PF01266 FAD dependent oxidoreductase LLJ08_RS00550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS00550 PF03466 LysR substrate binding domain LLJ08_RS00555 PF06532 Negative regulator of sigma F LLJ08_RS00560 PF04542 Sigma-70 region 2 LLJ08_RS00560 PF08281 Sigma-70, region 4 LLJ08_RS00570 PF05114 Protein of unknown function (DUF692) LLJ08_RS00590 PF01764 Lipase (class 3) LLJ08_RS00605 PF04717 Type VI secretion system, phage-baseplate injector LLJ08_RS00610 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS00610 PF00158 Sigma-54 interaction domain LLJ08_RS00610 PF00072 Response regulator receiver domain LLJ08_RS00615 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS00615 PF07724 AAA domain (Cdc48 subfamily) LLJ08_RS00615 PF17871 AAA lid domain LLJ08_RS00615 PF10431 C-terminal, D2-small domain, of ClpB protein LLJ08_RS00625 PF05947 Type VI secretion system, TssF LLJ08_RS00655 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LLJ08_RS00670 PF01263 Aldose 1-epimerase LLJ08_RS00675 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS00680 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS00685 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLJ08_RS00690 PF00005 ABC transporter LLJ08_RS00695 PF02028 BCCT, betaine/carnitine/choline family transporter LLJ08_RS00720 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS00720 PF00593 TonB dependent receptor LLJ08_RS00740 PF04362 Bacterial Fe(2+) trafficking LLJ08_RS00745 PF14815 NUDIX domain LLJ08_RS00745 PF00730 HhH-GPD superfamily base excision DNA repair protein LLJ08_RS00745 PF00633 Helix-hairpin-helix motif LLJ08_RS00745 PF10576 Iron-sulfur binding domain of endonuclease III LLJ08_RS00760 PF00005 ABC transporter LLJ08_RS00765 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS00775 PF08376 Nitrate and nitrite sensing LLJ08_RS00775 PF03861 ANTAR domain LLJ08_RS00780 PF00475 Imidazoleglycerol-phosphate dehydratase LLJ08_RS00785 PF00117 Glutamine amidotransferase class-I LLJ08_RS00795 PF00977 Histidine biosynthesis protein LLJ08_RS00800 PF00977 Histidine biosynthesis protein LLJ08_RS00820 PF13180 PDZ domain LLJ08_RS00820 PF03572 Peptidase family S41 LLJ08_RS00825 PF01551 Peptidase family M23 LLJ08_RS00830 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LLJ08_RS00830 PF01676 Metalloenzyme superfamily LLJ08_RS00835 PF00581 Rhodanese-like domain LLJ08_RS00840 PF00462 Glutaredoxin LLJ08_RS00845 PF02556 Preprotein translocase subunit SecB LLJ08_RS00850 PF00107 Zinc-binding dehydrogenase LLJ08_RS00850 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS00870 PF01812 5-formyltetrahydrofolate cyclo-ligase family LLJ08_RS00880 PF05164 Cell division protein ZapA LLJ08_RS00890 PF03695 Uncharacterised protein family (UPF0149) LLJ08_RS00895 PF05195 Aminopeptidase P, N-terminal domain LLJ08_RS00895 PF00557 Metallopeptidase family M24 LLJ08_RS00900 PF01494 FAD binding domain LLJ08_RS00910 PF01494 FAD binding domain LLJ08_RS00920 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS00925 PF01571 Aminomethyltransferase folate-binding domain LLJ08_RS00925 PF08669 Glycine cleavage T-protein C-terminal barrel domain LLJ08_RS00930 PF01597 Glycine cleavage H-protein LLJ08_RS00935 PF02347 Glycine cleavage system P-protein LLJ08_RS00940 PF01926 50S ribosome-binding GTPase LLJ08_RS00945 PF00034 Cytochrome c LLJ08_RS00950 PF01323 DSBA-like thioredoxin domain LLJ08_RS00960 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS00965 PF01510 N-acetylmuramoyl-L-alanine amidase LLJ08_RS00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS00975 PF00672 HAMP domain LLJ08_RS00975 PF08448 PAS fold LLJ08_RS00975 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB LLJ08_RS00975 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS00980 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS00980 PF00072 Response regulator receiver domain LLJ08_RS00980 PF00158 Sigma-54 interaction domain LLJ08_RS01000 PF07670 Nucleoside recognition LLJ08_RS01010 PF16868 NMT1-like family LLJ08_RS01015 PF17200 Single Cache domain 2 LLJ08_RS01015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS01015 PF00672 HAMP domain LLJ08_RS01025 PF08447 PAS fold LLJ08_RS01025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS01030 PF01590 GAF domain LLJ08_RS01030 PF00563 EAL domain LLJ08_RS01030 PF00360 Phytochrome region LLJ08_RS01030 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS01035 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS01040 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS01045 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS01045 PF00072 Response regulator receiver domain LLJ08_RS01050 PF03573 outer membrane porin, OprD family LLJ08_RS01065 PF01970 Tripartite tricarboxylate transporter TctA family LLJ08_RS01070 PF05145 Transition state regulatory protein AbrB LLJ08_RS01075 PF02690 Na+/Pi-cotransporter LLJ08_RS01085 PF17946 RecC C-terminal domain LLJ08_RS01090 PF12705 PD-(D/E)XK nuclease superfamily LLJ08_RS01090 PF13361 UvrD-like helicase C-terminal domain LLJ08_RS01090 PF00580 UvrD/REP helicase N-terminal domain LLJ08_RS01095 PF13538 UvrD-like helicase C-terminal domain LLJ08_RS01110 PF13426 PAS domain LLJ08_RS01110 PF08448 PAS fold LLJ08_RS01110 PF08447 PAS fold LLJ08_RS01110 PF05231 MASE1 LLJ08_RS01110 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS01110 PF00563 EAL domain LLJ08_RS01115 PF03061 Thioesterase superfamily LLJ08_RS01120 PF12849 PBP superfamily domain LLJ08_RS01125 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS01130 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS01135 PF00005 ABC transporter LLJ08_RS01140 PF01895 PhoU domain LLJ08_RS01145 PF03466 LysR substrate binding domain LLJ08_RS01145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS01155 PF10396 GTP-binding protein TrmE N-terminus LLJ08_RS01155 PF01926 50S ribosome-binding GTPase LLJ08_RS01155 PF12631 MnmE helical domain LLJ08_RS01165 PF03009 Glycerophosphoryl diester phosphodiesterase family LLJ08_RS01170 PF00186 Dihydrofolate reductase LLJ08_RS01200 PF02321 Outer membrane efflux protein LLJ08_RS01205 PF00873 AcrB/AcrD/AcrF family LLJ08_RS01210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS01210 PF00529 HlyD membrane-fusion protein of T1SS LLJ08_RS01215 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS01215 PF00672 HAMP domain LLJ08_RS01220 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS01220 PF00072 Response regulator receiver domain LLJ08_RS01225 PF00920 Dehydratase family LLJ08_RS01235 PF10672 S-adenosylmethionine-dependent methyltransferase LLJ08_RS01235 PF17785 PUA-like domain LLJ08_RS01240 PF01965 DJ-1/PfpI family LLJ08_RS01250 PF06827 Zinc finger found in FPG and IleRS LLJ08_RS01250 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LLJ08_RS01250 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LLJ08_RS01270 PF00037 4Fe-4S binding domain LLJ08_RS01275 PF01467 Cytidylyltransferase-like LLJ08_RS01280 PF05199 GMC oxidoreductase LLJ08_RS01280 PF00732 GMC oxidoreductase LLJ08_RS01290 PF00171 Aldehyde dehydrogenase family LLJ08_RS01295 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS01315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS01335 PF05193 Peptidase M16 inactive domain LLJ08_RS01340 PF00675 Insulinase (Peptidase family M16) LLJ08_RS01340 PF05193 Peptidase M16 inactive domain LLJ08_RS01345 PF02881 SRP54-type protein, helical bundle domain LLJ08_RS01345 PF00448 SRP54-type protein, GTPase domain LLJ08_RS01350 PF00005 ABC transporter LLJ08_RS01355 PF18075 FtsX extracellular domain LLJ08_RS01360 PF04545 Sigma-70, region 4 LLJ08_RS01360 PF04542 Sigma-70 region 2 LLJ08_RS01360 PF00140 Sigma-70 factor, region 1.2 LLJ08_RS01365 PF00072 Response regulator receiver domain LLJ08_RS01365 PF01627 Hpt domain LLJ08_RS01365 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS01365 PF00672 HAMP domain LLJ08_RS01365 PF17149 Periplasmic sensor domain found in signal transduction proteins LLJ08_RS01370 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS01370 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS01370 PF00563 EAL domain LLJ08_RS01375 PF00912 Transglycosylase LLJ08_RS01380 PF04241 Protein of unknown function (DUF423) LLJ08_RS01385 PF05690 Thiazole biosynthesis protein ThiG LLJ08_RS01385 PF02597 ThiS family LLJ08_RS01390 PF05690 Thiazole biosynthesis protein ThiG LLJ08_RS01395 PF02390 Putative methyltransferase LLJ08_RS01400 PF07044 Protein of unknown function (DUF1329) LLJ08_RS01415 PF06969 HemN C-terminal domain LLJ08_RS01415 PF04055 Radical SAM superfamily LLJ08_RS01420 PF01725 Ham1 family LLJ08_RS01430 PF07021 Methionine biosynthesis protein MetW LLJ08_RS01430 PF00561 alpha/beta hydrolase fold LLJ08_RS01435 PF00561 alpha/beta hydrolase fold LLJ08_RS01445 PF02325 YGGT family LLJ08_RS01450 PF03807 NADP oxidoreductase coenzyme F420-dependent LLJ08_RS01450 PF14748 Pyrroline-5-carboxylate reductase dimerisation LLJ08_RS01455 PF01168 Alanine racemase, N-terminal domain LLJ08_RS01460 PF00437 Type II/IV secretion system protein LLJ08_RS01465 PF00437 Type II/IV secretion system protein LLJ08_RS01485 PF01979 Amidohydrolase family LLJ08_RS01490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LLJ08_RS01490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LLJ08_RS01495 PF00156 Phosphoribosyl transferase domain LLJ08_RS01500 PF03652 Holliday junction resolvase LLJ08_RS01505 PF02622 Uncharacterized ACR, COG1678 LLJ08_RS01515 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LLJ08_RS01515 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LLJ08_RS01520 PF00072 Response regulator receiver domain LLJ08_RS01525 PF00072 Response regulator receiver domain LLJ08_RS01530 PF01584 CheW-like domain LLJ08_RS01535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS01535 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LLJ08_RS01540 PF03705 CheR methyltransferase, all-alpha domain LLJ08_RS01540 PF01739 CheR methyltransferase, SAM binding domain LLJ08_RS01545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS01545 PF01627 Hpt domain LLJ08_RS01545 PF00072 Response regulator receiver domain LLJ08_RS01545 PF02895 Signal transducing histidine kinase, homodimeric domain LLJ08_RS01545 PF01584 CheW-like domain LLJ08_RS01550 PF01339 CheB methylesterase LLJ08_RS01550 PF00072 Response regulator receiver domain LLJ08_RS01560 PF04452 RNA methyltransferase LLJ08_RS01565 PF00202 Aminotransferase class-III LLJ08_RS01570 PF01292 Prokaryotic cytochrome b561 LLJ08_RS01575 PF04264 YceI-like domain LLJ08_RS01580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS01580 PF00529 HlyD membrane-fusion protein of T1SS LLJ08_RS01585 PF00873 AcrB/AcrD/AcrF family LLJ08_RS01590 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LLJ08_RS01590 PF02321 Outer membrane efflux protein LLJ08_RS01595 PF00270 DEAD/DEAH box helicase LLJ08_RS01595 PF00271 Helicase conserved C-terminal domain LLJ08_RS01600 PF02219 Methylenetetrahydrofolate reductase LLJ08_RS01605 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LLJ08_RS01605 PF05221 S-adenosyl-L-homocysteine hydrolase LLJ08_RS01625 PF03120 NAD-dependent DNA ligase OB-fold domain LLJ08_RS01625 PF01653 NAD-dependent DNA ligase adenylation domain LLJ08_RS01630 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS01630 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS01630 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS01635 PF00005 ABC transporter LLJ08_RS01640 PF01061 ABC-2 type transporter LLJ08_RS01650 PF02773 S-adenosylmethionine synthetase, C-terminal domain LLJ08_RS01650 PF02772 S-adenosylmethionine synthetase, central domain LLJ08_RS01650 PF00438 S-adenosylmethionine synthetase, N-terminal domain LLJ08_RS01655 PF13649 Methyltransferase domain LLJ08_RS01665 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LLJ08_RS01670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS01670 PF03466 LysR substrate binding domain LLJ08_RS01675 PF02779 Transketolase, pyrimidine binding domain LLJ08_RS01675 PF02780 Transketolase, C-terminal domain LLJ08_RS01675 PF00456 Transketolase, thiamine diphosphate binding domain LLJ08_RS01680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LLJ08_RS01680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LLJ08_RS01685 PF00162 Phosphoglycerate kinase LLJ08_RS01700 PF01116 Fructose-bisphosphate aldolase class-II LLJ08_RS01705 PF00072 Response regulator receiver domain LLJ08_RS01705 PF03861 ANTAR domain LLJ08_RS01725 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS01725 PF00563 EAL domain LLJ08_RS01725 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS01750 PF12805 FUSC-like inner membrane protein yccS LLJ08_RS01755 PF00270 DEAD/DEAH box helicase LLJ08_RS01755 PF00271 Helicase conserved C-terminal domain LLJ08_RS01755 PF03880 DbpA RNA binding domain LLJ08_RS01770 PF00474 Sodium:solute symporter family LLJ08_RS01800 PF02743 Cache domain LLJ08_RS01800 PF00672 HAMP domain LLJ08_RS01800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS01805 PF01274 Malate synthase LLJ08_RS01815 PF00892 EamA-like transporter family LLJ08_RS01825 PF01204 Trehalase LLJ08_RS01840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLJ08_RS01850 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS01855 PF08450 SMP-30/Gluconolactonase/LRE-like region LLJ08_RS01860 PF01370 NAD dependent epimerase/dehydratase family LLJ08_RS01885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS01885 PF03466 LysR substrate binding domain LLJ08_RS01890 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLJ08_RS01890 PF13378 Enolase C-terminal domain-like LLJ08_RS01895 PF01970 Tripartite tricarboxylate transporter TctA family LLJ08_RS01910 PF13378 Enolase C-terminal domain-like LLJ08_RS01915 PF00701 Dihydrodipicolinate synthetase family LLJ08_RS01920 PF00171 Aldehyde dehydrogenase family LLJ08_RS01925 PF13378 Enolase C-terminal domain-like LLJ08_RS01925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLJ08_RS01930 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LLJ08_RS01930 PF08666 SAF domain LLJ08_RS01935 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS01935 PF00593 TonB dependent receptor LLJ08_RS01955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLJ08_RS01955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLJ08_RS01965 PF03573 outer membrane porin, OprD family LLJ08_RS01975 PF16200 C-terminal region of band_7 LLJ08_RS01975 PF01145 SPFH domain / Band 7 family LLJ08_RS01990 PF00106 short chain dehydrogenase LLJ08_RS01995 PF01679 Proteolipid membrane potential modulator LLJ08_RS02000 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LLJ08_RS02000 PF00072 Response regulator receiver domain LLJ08_RS02000 PF01627 Hpt domain LLJ08_RS02000 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS02000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS02000 PF00672 HAMP domain LLJ08_RS02005 PF03705 CheR methyltransferase, all-alpha domain LLJ08_RS02005 PF01739 CheR methyltransferase, SAM binding domain LLJ08_RS02010 PF01339 CheB methylesterase LLJ08_RS02015 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS02015 PF00072 Response regulator receiver domain LLJ08_RS02020 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LLJ08_RS02025 PF00924 Mechanosensitive ion channel LLJ08_RS02025 PF12795 Mechanosensitive ion channel porin domain LLJ08_RS02025 PF12794 Mechanosensitive ion channel inner membrane domain 1 LLJ08_RS02030 PF03471 Transporter associated domain LLJ08_RS02030 PF02080 TrkA-C domain LLJ08_RS02030 PF00999 Sodium/hydrogen exchanger family LLJ08_RS02035 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS02035 PF12806 Acetyl-CoA dehydrogenase C-terminal like LLJ08_RS02035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS02035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS02040 PF00348 Polyprenyl synthetase LLJ08_RS02045 PF01070 FMN-dependent dehydrogenase LLJ08_RS02050 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LLJ08_RS02060 PF01593 Flavin containing amine oxidoreductase LLJ08_RS02070 PF04116 Fatty acid hydroxylase superfamily LLJ08_RS02075 PF03060 Nitronate monooxygenase LLJ08_RS02080 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LLJ08_RS02085 PF01636 Phosphotransferase enzyme family LLJ08_RS02090 PF00156 Phosphoribosyl transferase domain LLJ08_RS02095 PF04055 Radical SAM superfamily LLJ08_RS02095 PF06968 Biotin and Thiamin Synthesis associated domain LLJ08_RS02100 PF00155 Aminotransferase class I and II LLJ08_RS02105 PF12697 Alpha/beta hydrolase family LLJ08_RS02105 PF08241 Methyltransferase domain LLJ08_RS02110 PF08241 Methyltransferase domain LLJ08_RS02125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS02125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS02125 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS02125 PF12806 Acetyl-CoA dehydrogenase C-terminal like LLJ08_RS02130 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS02135 PF12806 Acetyl-CoA dehydrogenase C-terminal like LLJ08_RS02135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS02135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS02135 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS02140 PF01625 Peptide methionine sulfoxide reductase LLJ08_RS02145 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS02145 PF00563 EAL domain LLJ08_RS02145 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS02155 PF02817 e3 binding domain LLJ08_RS02155 PF00364 Biotin-requiring enzyme LLJ08_RS02155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLJ08_RS02160 PF00456 Transketolase, thiamine diphosphate binding domain LLJ08_RS02160 PF17831 Pyruvate dehydrogenase E1 component middle domain LLJ08_RS02165 PF08335 GlnD PII-uridylyltransferase LLJ08_RS02165 PF03710 Glutamate-ammonia ligase adenylyltransferase LLJ08_RS02170 PF01063 Amino-transferase class IV LLJ08_RS02175 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LLJ08_RS02180 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LLJ08_RS02185 PF13439 Glycosyltransferase Family 4 LLJ08_RS02185 PF00534 Glycosyl transferases group 1 LLJ08_RS02210 PF16861 Carbamoyltransferase C-terminus LLJ08_RS02210 PF02543 Carbamoyltransferase N-terminus LLJ08_RS02215 PF00535 Glycosyl transferase family 2 LLJ08_RS02245 PF00664 ABC transporter transmembrane region LLJ08_RS02245 PF00005 ABC transporter LLJ08_RS02260 PF01467 Cytidylyltransferase-like LLJ08_RS02260 PF00294 pfkB family carbohydrate kinase LLJ08_RS02270 PF00248 Aldo/keto reductase family LLJ08_RS02275 PF01266 FAD dependent oxidoreductase LLJ08_RS02280 PF00893 Small Multidrug Resistance protein LLJ08_RS02285 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LLJ08_RS02290 PF02321 Outer membrane efflux protein LLJ08_RS02295 PF13667 ThiC-associated domain LLJ08_RS02295 PF01964 Radical SAM ThiC family LLJ08_RS02305 PF00293 NUDIX domain LLJ08_RS02315 PF00149 Calcineurin-like phosphoesterase LLJ08_RS02320 PF05728 Uncharacterised protein family (UPF0227) LLJ08_RS02325 PF00204 DNA gyrase B LLJ08_RS02325 PF00986 DNA gyrase B subunit, carboxyl terminus LLJ08_RS02325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS02325 PF01751 Toprim domain LLJ08_RS02345 PF00521 DNA gyrase/topoisomerase IV, subunit A LLJ08_RS02345 PF03989 DNA gyrase C-terminal domain, beta-propeller LLJ08_RS02365 PF00107 Zinc-binding dehydrogenase LLJ08_RS02365 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS02370 PF00563 EAL domain LLJ08_RS02370 PF05231 MASE1 LLJ08_RS02380 PF02666 Phosphatidylserine decarboxylase LLJ08_RS02385 PF00581 Rhodanese-like domain LLJ08_RS02395 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS02400 PF00691 OmpA family LLJ08_RS02400 PF13677 Membrane MotB of proton-channel complex MotA/MotB LLJ08_RS02405 PF03193 RsgA GTPase LLJ08_RS02415 PF00929 Exonuclease LLJ08_RS02420 PF13460 NAD(P)H-binding LLJ08_RS02430 PF01575 MaoC like domain LLJ08_RS02435 PF03788 LrgA family LLJ08_RS02440 PF04172 LrgB-like family LLJ08_RS02450 PF12147 Putative methyltransferase LLJ08_RS02450 PF12146 Serine aminopeptidase, S33 LLJ08_RS02455 PF09335 SNARE associated Golgi protein LLJ08_RS02460 PF00171 Aldehyde dehydrogenase family LLJ08_RS02465 PF01467 Cytidylyltransferase-like LLJ08_RS02475 PF02590 Predicted SPOUT methyltransferase LLJ08_RS02480 PF03717 Penicillin-binding Protein dimerisation domain LLJ08_RS02480 PF00905 Penicillin binding protein transpeptidase domain LLJ08_RS02485 PF01098 Cell cycle protein LLJ08_RS02490 PF13406 Transglycosylase SLT domain LLJ08_RS02495 PF03330 Lytic transglycolase LLJ08_RS02495 PF05036 Sporulation related domain LLJ08_RS02500 PF07943 Penicillin-binding protein 5, C-terminal domain LLJ08_RS02500 PF00768 D-alanyl-D-alanine carboxypeptidase LLJ08_RS02505 PF04359 Protein of unknown function (DUF493) LLJ08_RS02510 PF03099 Biotin/lipoate A/B protein ligase family LLJ08_RS02515 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LLJ08_RS02515 PF04055 Radical SAM superfamily LLJ08_RS02525 PF13406 Transglycosylase SLT domain LLJ08_RS02545 PF13603 Leucyl-tRNA synthetase, Domain 2 LLJ08_RS02545 PF00133 tRNA synthetases class I (I, L, M and V) LLJ08_RS02545 PF09334 tRNA synthetases class I (M) LLJ08_RS02545 PF08264 Anticodon-binding domain of tRNA LLJ08_RS02560 PF00795 Carbon-nitrogen hydrolase LLJ08_RS02565 PF00571 CBS domain LLJ08_RS02565 PF03471 Transporter associated domain LLJ08_RS02570 PF02130 Uncharacterized protein family UPF0054 LLJ08_RS02575 PF02562 PhoH-like protein LLJ08_RS02580 PF00919 Uncharacterized protein family UPF0004 LLJ08_RS02580 PF01938 TRAM domain LLJ08_RS02580 PF04055 Radical SAM superfamily LLJ08_RS02595 PF00202 Aminotransferase class-III LLJ08_RS02600 PF02581 Thiamine monophosphate synthase LLJ08_RS02605 PF02581 Thiamine monophosphate synthase LLJ08_RS02605 PF08543 Phosphomethylpyrimidine kinase LLJ08_RS02610 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LLJ08_RS02610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS02610 PF01627 Hpt domain LLJ08_RS02610 PF00672 HAMP domain LLJ08_RS02610 PF00072 Response regulator receiver domain LLJ08_RS02610 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS02615 PF18158 Adaptive response protein AidB N-terminal domain LLJ08_RS02615 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS02615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS02625 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LLJ08_RS02625 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LLJ08_RS02630 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LLJ08_RS02630 PF01048 Phosphorylase superfamily LLJ08_RS02640 PF04955 HupE / UreJ protein LLJ08_RS02645 PF02492 CobW/HypB/UreG, nucleotide-binding domain LLJ08_RS02650 PF01730 UreF LLJ08_RS02655 PF05194 UreE urease accessory protein, C-terminal domain LLJ08_RS02655 PF02814 UreE urease accessory protein, N-terminal domain LLJ08_RS02680 PF01258 Prokaryotic dksA/traR C4-type zinc finger LLJ08_RS02685 PF00360 Phytochrome region LLJ08_RS02685 PF01590 GAF domain LLJ08_RS02685 PF08446 PAS fold LLJ08_RS02685 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS02685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS02690 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LLJ08_RS02700 PF01979 Amidohydrolase family LLJ08_RS02700 PF00449 Urease alpha-subunit, N-terminal domain LLJ08_RS02705 PF00699 Urease beta subunit LLJ08_RS02715 PF00547 Urease, gamma subunit LLJ08_RS02720 PF01774 UreD urease accessory protein LLJ08_RS02725 PF00005 ABC transporter LLJ08_RS02730 PF12399 Branched-chain amino acid ATP-binding cassette transporter LLJ08_RS02730 PF00005 ABC transporter LLJ08_RS02735 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS02740 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS02750 PF00849 RNA pseudouridylate synthase LLJ08_RS02765 PF01037 Lrp/AsnC ligand binding domain LLJ08_RS02765 PF13404 AsnC-type helix-turn-helix domain LLJ08_RS02770 PF16916 Dimerisation domain of Zinc Transporter LLJ08_RS02770 PF01545 Cation efflux family LLJ08_RS02785 PF08482 ATP-dependent helicase C-terminal LLJ08_RS02785 PF00271 Helicase conserved C-terminal domain LLJ08_RS02785 PF04408 Helicase associated domain (HA2) LLJ08_RS02785 PF00270 DEAD/DEAH box helicase LLJ08_RS02815 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LLJ08_RS02815 PF02779 Transketolase, pyrimidine binding domain LLJ08_RS02815 PF02780 Transketolase, C-terminal domain LLJ08_RS02820 PF00348 Polyprenyl synthetase LLJ08_RS02825 PF02609 Exonuclease VII small subunit LLJ08_RS02835 PF06276 Ferric iron reductase FhuF-like transporter LLJ08_RS02835 PF04183 IucA / IucC family LLJ08_RS02850 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LLJ08_RS02855 PF00282 Pyridoxal-dependent decarboxylase conserved domain LLJ08_RS02865 PF13426 PAS domain LLJ08_RS02865 PF00563 EAL domain LLJ08_RS02865 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS02875 PF08448 PAS fold LLJ08_RS02875 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS02880 PF00719 Inorganic pyrophosphatase LLJ08_RS02885 PF06167 Glucose-regulated metallo-peptidase M90 LLJ08_RS02890 PF09423 PhoD-like phosphatase LLJ08_RS02890 PF16655 PhoD-like phosphatase, N-terminal domain LLJ08_RS02895 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LLJ08_RS02900 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LLJ08_RS02910 PF00171 Aldehyde dehydrogenase family LLJ08_RS02915 PF00465 Iron-containing alcohol dehydrogenase LLJ08_RS02920 PF08245 Mur ligase middle domain LLJ08_RS02920 PF02875 Mur ligase family, glutamate ligase domain LLJ08_RS02920 PF01225 Mur ligase family, catalytic domain LLJ08_RS02925 PF02441 Flavoprotein LLJ08_RS02935 PF17862 AAA+ lid domain LLJ08_RS02935 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS02935 PF01434 Peptidase family M41 LLJ08_RS02935 PF06480 FtsH Extracellular LLJ08_RS02940 PF08331 Domain of unknown function (DUF1730) LLJ08_RS02945 PF01256 Carbohydrate kinase LLJ08_RS02945 PF03853 YjeF-related protein N-terminus LLJ08_RS02950 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LLJ08_RS02955 PF01520 N-acetylmuramoyl-L-alanine amidase LLJ08_RS02955 PF11741 AMIN domain LLJ08_RS02960 PF01119 DNA mismatch repair protein, C-terminal domain LLJ08_RS02960 PF08676 MutL C terminal dimerisation domain LLJ08_RS02970 PF17209 Hfq protein LLJ08_RS02975 PF16360 GTP-binding GTPase Middle Region LLJ08_RS02975 PF13167 GTP-binding GTPase N-terminal LLJ08_RS02975 PF01926 50S ribosome-binding GTPase LLJ08_RS02980 PF01145 SPFH domain / Band 7 family LLJ08_RS02980 PF12221 Bacterial membrane protein N terminal LLJ08_RS02985 PF01145 SPFH domain / Band 7 family LLJ08_RS02990 PF13393 Histidyl-tRNA synthetase LLJ08_RS02995 PF00709 Adenylosuccinate synthetase LLJ08_RS03010 PF17876 Cold shock domain LLJ08_RS03010 PF08461 Ribonuclease R winged-helix domain LLJ08_RS03010 PF08206 Ribonuclease B OB domain LLJ08_RS03010 PF00773 RNB domain LLJ08_RS03010 PF00575 S1 RNA binding domain LLJ08_RS03015 PF08032 RNA 2'-O ribose methyltransferase substrate binding LLJ08_RS03015 PF00588 SpoU rRNA Methylase family LLJ08_RS03020 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS03020 PF08448 PAS fold LLJ08_RS03020 PF13188 PAS domain LLJ08_RS03020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS03020 PF00072 Response regulator receiver domain LLJ08_RS03025 PF01250 Ribosomal protein S6 LLJ08_RS03030 PF01084 Ribosomal protein S18 LLJ08_RS03040 PF03948 Ribosomal protein L9, C-terminal domain LLJ08_RS03040 PF01281 Ribosomal protein L9, N-terminal domain LLJ08_RS03045 PF00772 DnaB-like helicase N terminal domain LLJ08_RS03045 PF03796 DnaB-like helicase C terminal domain LLJ08_RS03050 PF00842 Alanine racemase, C-terminal domain LLJ08_RS03050 PF01168 Alanine racemase, N-terminal domain LLJ08_RS03065 PF08497 Radical SAM N-terminal LLJ08_RS03065 PF11842 Domain of unknown function (DUF3362) LLJ08_RS03065 PF04055 Radical SAM superfamily LLJ08_RS03070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS03075 PF00072 Response regulator receiver domain LLJ08_RS03075 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS03085 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS03085 PF00072 Response regulator receiver domain LLJ08_RS03085 PF00158 Sigma-54 interaction domain LLJ08_RS03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS03090 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS03100 PF13525 Outer membrane lipoprotein LLJ08_RS03105 PF00849 RNA pseudouridylate synthase LLJ08_RS03105 PF01479 S4 domain LLJ08_RS03110 PF02578 Multi-copper polyphenol oxidoreductase laccase LLJ08_RS03115 PF17871 AAA lid domain LLJ08_RS03115 PF10431 C-terminal, D2-small domain, of ClpB protein LLJ08_RS03115 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS03115 PF07724 AAA domain (Cdc48 subfamily) LLJ08_RS03115 PF02861 Clp amino terminal domain, pathogenicity island component LLJ08_RS03135 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS03150 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LLJ08_RS03150 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LLJ08_RS03160 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LLJ08_RS03165 PF00579 tRNA synthetases class I (W and Y) LLJ08_RS03170 PF03969 AFG1-like ATPase LLJ08_RS03175 PF12833 Helix-turn-helix domain LLJ08_RS03180 PF04493 Endonuclease V LLJ08_RS03185 PF01510 N-acetylmuramoyl-L-alanine amidase LLJ08_RS03195 PF00672 HAMP domain LLJ08_RS03195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS03200 PF01026 TatD related DNase LLJ08_RS03210 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LLJ08_RS03210 PF12833 Helix-turn-helix domain LLJ08_RS03210 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LLJ08_RS03210 PF02805 Metal binding domain of Ada LLJ08_RS03220 PF02321 Outer membrane efflux protein LLJ08_RS03225 PF00873 AcrB/AcrD/AcrF family LLJ08_RS03230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS03230 PF00529 HlyD membrane-fusion protein of T1SS LLJ08_RS03235 PF00210 Ferritin-like domain LLJ08_RS03240 PF16591 Helical bimodular sensor domain LLJ08_RS03240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS03240 PF00672 HAMP domain LLJ08_RS03245 PF09278 MerR, DNA binding LLJ08_RS03245 PF00376 MerR family regulatory protein LLJ08_RS03250 PF00403 Heavy-metal-associated domain LLJ08_RS03260 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS03260 PF08361 MAATS-type transcriptional repressor, C-terminal region LLJ08_RS03265 PF07690 Major Facilitator Superfamily LLJ08_RS03275 PF00962 Adenosine/AMP deaminase LLJ08_RS03280 PF01205 Uncharacterized protein family UPF0029 LLJ08_RS03285 PF03860 Domain of Unknown Function (DUF326) LLJ08_RS03295 PF02492 CobW/HypB/UreG, nucleotide-binding domain LLJ08_RS03295 PF07683 Cobalamin synthesis protein cobW C-terminal domain LLJ08_RS03300 PF01258 Prokaryotic dksA/traR C4-type zinc finger LLJ08_RS03305 PF01613 Flavin reductase like domain LLJ08_RS03310 PF00881 Nitroreductase family LLJ08_RS03315 PF00561 alpha/beta hydrolase fold LLJ08_RS03320 PF01042 Endoribonuclease L-PSP LLJ08_RS03325 PF00857 Isochorismatase family LLJ08_RS03330 PF00296 Luciferase-like monooxygenase LLJ08_RS03335 PF08362 YcdC-like protein, C-terminal region LLJ08_RS03335 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS03365 PF12833 Helix-turn-helix domain LLJ08_RS03365 PF01965 DJ-1/PfpI family LLJ08_RS03370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLJ08_RS03385 PF02627 Carboxymuconolactone decarboxylase family LLJ08_RS03395 PF01595 Cyclin M transmembrane N-terminal domain LLJ08_RS03395 PF00571 CBS domain LLJ08_RS03405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLJ08_RS03415 PF07995 Glucose / Sorbosone dehydrogenase LLJ08_RS03435 PF02608 ABC transporter substrate-binding protein PnrA-like LLJ08_RS03440 PF00005 ABC transporter LLJ08_RS03450 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS03460 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS03470 PF00313 'Cold-shock' DNA-binding domain LLJ08_RS03475 PF08274 PhnA Zinc-Ribbon LLJ08_RS03475 PF03831 PhnA domain LLJ08_RS03480 PF03061 Thioesterase superfamily LLJ08_RS03490 PF07969 Amidohydrolase family LLJ08_RS03495 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LLJ08_RS03500 PF02560 Cyanate lyase C-terminal domain LLJ08_RS03510 PF00155 Aminotransferase class I and II LLJ08_RS03515 PF01329 Pterin 4 alpha carbinolamine dehydratase LLJ08_RS03520 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LLJ08_RS03525 PF00158 Sigma-54 interaction domain LLJ08_RS03525 PF18024 Helix-turn-helix domain LLJ08_RS03530 PF03315 Serine dehydratase beta chain LLJ08_RS03530 PF03313 Serine dehydratase alpha chain LLJ08_RS03535 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS03540 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS03545 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS03550 PF04343 Protein of unknown function, DUF488 LLJ08_RS03565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS03565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS03565 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS03570 PF04205 FMN-binding domain LLJ08_RS03570 PF12801 4Fe-4S binding domain LLJ08_RS03575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LLJ08_RS03575 PF18793 Nitrous oxide reductase propeller repeat 2 LLJ08_RS03575 PF18764 Nitrous oxide reductase propeller repeat LLJ08_RS03580 PF05048 Periplasmic copper-binding protein (NosD) LLJ08_RS03585 PF00005 ABC transporter LLJ08_RS03590 PF12679 ABC-2 family transporter protein LLJ08_RS03595 PF05573 NosL LLJ08_RS03600 PF02416 mttA/Hcf106 family LLJ08_RS03615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS03620 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLJ08_RS03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS03630 PF03466 LysR substrate binding domain LLJ08_RS03640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LLJ08_RS03640 PF14824 Sirohaem biosynthesis protein central LLJ08_RS03640 PF10414 Sirohaem synthase dimerisation region LLJ08_RS03645 PF13186 Iron-sulfur cluster-binding domain LLJ08_RS03645 PF04055 Radical SAM superfamily LLJ08_RS03650 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LLJ08_RS03655 PF00510 Cytochrome c oxidase subunit III LLJ08_RS03660 PF07728 AAA domain (dynein-related subfamily) LLJ08_RS03660 PF08406 CbbQ/NirQ/NorQ C-terminal LLJ08_RS03665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS03670 PF03264 NapC/NirT cytochrome c family, N-terminal region LLJ08_RS03675 PF09459 Ethylbenzene dehydrogenase LLJ08_RS03680 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS03685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS03695 PF17805 AsnC-like ligand binding domain LLJ08_RS03700 PF17805 AsnC-like ligand binding domain LLJ08_RS03705 PF17805 AsnC-like ligand binding domain LLJ08_RS03705 PF13404 AsnC-type helix-turn-helix domain LLJ08_RS03710 PF17805 AsnC-like ligand binding domain LLJ08_RS03715 PF00034 Cytochrome c LLJ08_RS03720 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLJ08_RS03725 PF00092 von Willebrand factor type A domain LLJ08_RS03730 PF07148 Maltose operon periplasmic protein precursor (MalM) LLJ08_RS03735 PF02264 LamB porin LLJ08_RS03740 PF00686 Starch binding domain LLJ08_RS03740 PF00128 Alpha amylase, catalytic domain LLJ08_RS03740 PF09081 Domain of unknown function (DUF1921) LLJ08_RS03750 PF00128 Alpha amylase, catalytic domain LLJ08_RS03755 PF01547 Bacterial extracellular solute-binding protein LLJ08_RS03760 PF14785 Maltose transport system permease protein MalF P2 domain LLJ08_RS03760 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS03765 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS03770 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS03770 PF17874 MalT-like TPR region LLJ08_RS03780 PF13417 Glutathione S-transferase, N-terminal domain LLJ08_RS03785 PF14602 Hexapeptide repeat of succinyl-transferase LLJ08_RS03785 PF12464 Maltose acetyltransferase LLJ08_RS03790 PF00128 Alpha amylase, catalytic domain LLJ08_RS03795 PF00005 ABC transporter LLJ08_RS03795 PF17912 MalK OB fold domain LLJ08_RS03800 PF01810 LysE type translocator LLJ08_RS03805 PF00293 NUDIX domain LLJ08_RS03805 PF03099 Biotin/lipoate A/B protein ligase family LLJ08_RS03820 PF00271 Helicase conserved C-terminal domain LLJ08_RS03820 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LLJ08_RS03820 PF04851 Type III restriction enzyme, res subunit LLJ08_RS03820 PF08463 EcoEI R protein C-terminal LLJ08_RS03825 PF04471 Restriction endonuclease LLJ08_RS03825 PF14338 Mrr N-terminal domain LLJ08_RS03830 PF02384 N-6 DNA Methylase LLJ08_RS03830 PF12161 HsdM N-terminal domain LLJ08_RS03835 PF01420 Type I restriction modification DNA specificity domain LLJ08_RS03865 PF13356 Arm DNA-binding domain LLJ08_RS03865 PF14659 Phage integrase, N-terminal SAM-like domain LLJ08_RS03865 PF00589 Phage integrase family LLJ08_RS03885 PF02589 LUD domain LLJ08_RS03890 PF11870 Domain of unknown function (DUF3390) LLJ08_RS03890 PF13183 4Fe-4S dicluster domain LLJ08_RS03890 PF02589 LUD domain LLJ08_RS03895 PF02754 Cysteine-rich domain LLJ08_RS03900 PF02652 L-lactate permease LLJ08_RS03905 PF07729 FCD domain LLJ08_RS03905 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS03910 PF01668 SmpB protein LLJ08_RS03915 PF03364 Polyketide cyclase / dehydrase and lipid transport LLJ08_RS03920 PF03658 RnfH family Ubiquitin LLJ08_RS03925 PF04355 SmpA / OmlA family LLJ08_RS03930 PF01475 Ferric uptake regulator family LLJ08_RS03935 PF02463 RecF/RecN/SMC N terminal domain LLJ08_RS03940 PF01025 GrpE LLJ08_RS03945 PF00012 Hsp70 protein LLJ08_RS03950 PF00226 DnaJ domain LLJ08_RS03950 PF01556 DnaJ C terminal domain LLJ08_RS03950 PF00684 DnaJ central domain LLJ08_RS03955 PF01113 Dihydrodipicolinate reductase, N-terminus LLJ08_RS03955 PF05173 Dihydrodipicolinate reductase, C-terminus LLJ08_RS03960 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LLJ08_RS03960 PF00117 Glutamine amidotransferase class-I LLJ08_RS03965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLJ08_RS03965 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LLJ08_RS03965 PF02142 MGS-like domain LLJ08_RS03970 PF01272 Transcription elongation factor, GreA/GreB, C-term LLJ08_RS03970 PF03449 Transcription elongation factor, N-terminal LLJ08_RS03980 PF01985 CRS1 / YhbY (CRM) domain LLJ08_RS03985 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS03985 PF17862 AAA+ lid domain LLJ08_RS03985 PF06480 FtsH Extracellular LLJ08_RS03985 PF01434 Peptidase family M41 LLJ08_RS03990 PF00809 Pterin binding enzyme LLJ08_RS03995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LLJ08_RS03995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LLJ08_RS03995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LLJ08_RS03995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LLJ08_RS04000 PF00121 Triosephosphate isomerase LLJ08_RS04005 PF03840 Preprotein translocase SecG subunit LLJ08_RS04020 PF02576 RimP N-terminal domain LLJ08_RS04020 PF17384 RimP C-terminal SH3 domain LLJ08_RS04025 PF13184 NusA-like KH domain LLJ08_RS04025 PF08529 NusA N-terminal domain LLJ08_RS04025 PF00575 S1 RNA binding domain LLJ08_RS04030 PF04760 Translation initiation factor IF-2, N-terminal region LLJ08_RS04030 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS04030 PF11987 Translation-initiation factor 2 LLJ08_RS04030 PF08364 Bacterial translation initiation factor IF-2 associated region LLJ08_RS04035 PF02033 Ribosome-binding factor A LLJ08_RS04040 PF16198 tRNA pseudouridylate synthase B C-terminal domain LLJ08_RS04040 PF01509 TruB family pseudouridylate synthase (N terminal domain) LLJ08_RS04040 PF09157 Pseudouridine synthase II TruB, C-terminal LLJ08_RS04045 PF00312 Ribosomal protein S15 LLJ08_RS04050 PF03725 3' exoribonuclease family, domain 2 LLJ08_RS04050 PF00575 S1 RNA binding domain LLJ08_RS04050 PF01138 3' exoribonuclease family, domain 1 LLJ08_RS04050 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LLJ08_RS04050 PF00013 KH domain LLJ08_RS04055 PF04972 BON domain LLJ08_RS04075 PF10672 S-adenosylmethionine-dependent methyltransferase LLJ08_RS04075 PF17785 PUA-like domain LLJ08_RS04085 PF00342 Phosphoglucose isomerase LLJ08_RS04090 PF02261 Aspartate decarboxylase LLJ08_RS04095 PF02569 Pantoate-beta-alanine ligase LLJ08_RS04100 PF02548 Ketopantoate hydroxymethyltransferase LLJ08_RS04105 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LLJ08_RS04110 PF01743 Poly A polymerase head domain LLJ08_RS04110 PF12626 Polymerase A arginine-rich C-terminus LLJ08_RS04110 PF12627 Probable RNA and SrmB- binding site of polymerase A LLJ08_RS04115 PF00158 Sigma-54 interaction domain LLJ08_RS04115 PF00072 Response regulator receiver domain LLJ08_RS04115 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS04120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS04120 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS04120 PF00989 PAS fold LLJ08_RS04120 PF08447 PAS fold LLJ08_RS04130 PF00749 tRNA synthetases class I (E and Q), catalytic domain LLJ08_RS04135 PF01258 Prokaryotic dksA/traR C4-type zinc finger LLJ08_RS04140 PF00155 Aminotransferase class I and II LLJ08_RS04145 PF03749 Sugar fermentation stimulation protein RE domain LLJ08_RS04145 PF17746 SfsA N-terminal OB domain LLJ08_RS04150 PF04321 RmlD substrate binding domain LLJ08_RS04155 PF03547 Membrane transport protein LLJ08_RS04170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LLJ08_RS04170 PF00072 Response regulator receiver domain LLJ08_RS04170 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS04170 PF01627 Hpt domain LLJ08_RS04170 PF00672 HAMP domain LLJ08_RS04170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS04175 PF02843 Phosphoribosylglycinamide synthetase, C domain LLJ08_RS04175 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LLJ08_RS04175 PF02844 Phosphoribosylglycinamide synthetase, N domain LLJ08_RS04180 PF01808 AICARFT/IMPCHase bienzyme LLJ08_RS04180 PF02142 MGS-like domain LLJ08_RS04185 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS04190 PF01207 Dihydrouridine synthase (Dus) LLJ08_RS04205 PF02785 Biotin carboxylase C-terminal domain LLJ08_RS04205 PF00289 Biotin carboxylase, N-terminal domain LLJ08_RS04205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLJ08_RS04210 PF00364 Biotin-requiring enzyme LLJ08_RS04215 PF01220 Dehydroquinase class II LLJ08_RS04220 PF11412 Disulphide bond corrector protein DsbC LLJ08_RS04220 PF02683 Cytochrome C biogenesis protein transmembrane region LLJ08_RS04230 PF01032 FecCD transport family LLJ08_RS04235 PF00005 ABC transporter LLJ08_RS04265 PF00912 Transglycosylase LLJ08_RS04265 PF00905 Penicillin binding protein transpeptidase domain LLJ08_RS04265 PF14814 Bifunctional transglycosylase second domain LLJ08_RS04275 PF04287 tRNA pseudouridine synthase C LLJ08_RS04275 PF00849 RNA pseudouridylate synthase LLJ08_RS04285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LLJ08_RS04285 PF00205 Thiamine pyrophosphate enzyme, central domain LLJ08_RS04285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LLJ08_RS04290 PF10369 Small subunit of acetolactate synthase LLJ08_RS04295 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LLJ08_RS04295 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LLJ08_RS04300 PF01066 CDP-alcohol phosphatidyltransferase LLJ08_RS04305 PF00174 Oxidoreductase molybdopterin binding domain LLJ08_RS04310 PF01794 Ferric reductase like transmembrane component LLJ08_RS04340 PF04403 Paraquat-inducible protein A LLJ08_RS04345 PF04403 Paraquat-inducible protein A LLJ08_RS04350 PF02470 MlaD protein LLJ08_RS04370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LLJ08_RS04375 PF16653 Saccharopine dehydrogenase C-terminal domain LLJ08_RS04375 PF03435 Saccharopine dehydrogenase NADP binding domain LLJ08_RS04380 PF00682 HMGL-like LLJ08_RS04380 PF08502 LeuA allosteric (dimerisation) domain LLJ08_RS04390 PF00583 Acetyltransferase (GNAT) family LLJ08_RS04400 PF02358 Trehalose-phosphatase LLJ08_RS04405 PF00982 Glycosyltransferase family 20 LLJ08_RS04410 PF00484 Carbonic anhydrase LLJ08_RS04415 PF00892 EamA-like transporter family LLJ08_RS04430 PF02899 Phage integrase, N-terminal SAM-like domain LLJ08_RS04430 PF00589 Phage integrase family LLJ08_RS04515 PF03573 outer membrane porin, OprD family LLJ08_RS04520 PF07519 Tannase and feruloyl esterase LLJ08_RS04530 PF13185 GAF domain LLJ08_RS04530 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS04530 PF00158 Sigma-54 interaction domain LLJ08_RS04535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLJ08_RS04545 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS04550 PF13411 MerR HTH family regulatory protein LLJ08_RS04555 PF00108 Thiolase, N-terminal domain LLJ08_RS04555 PF02803 Thiolase, C-terminal domain LLJ08_RS04560 PF01144 Coenzyme A transferase LLJ08_RS04565 PF01144 Coenzyme A transferase LLJ08_RS04570 PF00682 HMGL-like LLJ08_RS04575 PF02785 Biotin carboxylase C-terminal domain LLJ08_RS04575 PF00289 Biotin carboxylase, N-terminal domain LLJ08_RS04575 PF00364 Biotin-requiring enzyme LLJ08_RS04575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLJ08_RS04585 PF01039 Carboxyl transferase domain LLJ08_RS04590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS04590 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS04590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS04595 PF03851 UV-endonuclease UvdE LLJ08_RS04600 PF00501 AMP-binding enzyme LLJ08_RS04600 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS04610 PF03573 outer membrane porin, OprD family LLJ08_RS04615 PF00005 ABC transporter LLJ08_RS04615 PF12399 Branched-chain amino acid ATP-binding cassette transporter LLJ08_RS04620 PF00005 ABC transporter LLJ08_RS04630 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS04645 PF01926 50S ribosome-binding GTPase LLJ08_RS04645 PF06071 Protein of unknown function (DUF933) LLJ08_RS04650 PF01195 Peptidyl-tRNA hydrolase LLJ08_RS04655 PF01386 Ribosomal L25p family LLJ08_RS04655 PF14693 Ribosomal protein TL5, C-terminal domain LLJ08_RS04660 PF14572 Phosphoribosyl synthetase-associated domain LLJ08_RS04660 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LLJ08_RS04675 PF08544 GHMP kinases C terminal LLJ08_RS04675 PF00288 GHMP kinases N terminal domain LLJ08_RS04680 PF03550 Outer membrane lipoprotein LolB LLJ08_RS04690 PF01488 Shikimate / quinate 5-dehydrogenase LLJ08_RS04690 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LLJ08_RS04690 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LLJ08_RS04695 PF00472 RF-1 domain LLJ08_RS04695 PF03462 PCRF domain LLJ08_RS04700 PF17827 PrmC N-terminal domain LLJ08_RS04700 PF05175 Methyltransferase small domain LLJ08_RS04705 PF00899 ThiF family LLJ08_RS04710 PF01177 Asp/Glu/Hydantoin racemase LLJ08_RS04715 PF09411 Lipid A 3-O-deacylase (PagL) LLJ08_RS04725 PF00860 Permease family LLJ08_RS04735 PF00156 Phosphoribosyl transferase domain LLJ08_RS04745 PF07044 Protein of unknown function (DUF1329) LLJ08_RS04750 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS04775 PF07516 SecA Wing and Scaffold domain LLJ08_RS04775 PF07517 SecA DEAD-like domain LLJ08_RS04775 PF02810 SEC-C motif LLJ08_RS04775 PF01043 SecA preprotein cross-linking domain LLJ08_RS04780 PF01960 ArgJ family LLJ08_RS04790 PF00293 NUDIX domain LLJ08_RS04795 PF10417 C-terminal domain of 1-Cys peroxiredoxin LLJ08_RS04795 PF00578 AhpC/TSA family LLJ08_RS04800 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS04800 PF13192 Thioredoxin domain LLJ08_RS04820 PF01923 Cobalamin adenosyltransferase LLJ08_RS04825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS04825 PF00072 Response regulator receiver domain LLJ08_RS04825 PF13188 PAS domain LLJ08_RS04825 PF08448 PAS fold LLJ08_RS04825 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS04830 PF02558 Ketopantoate reductase PanE/ApbA LLJ08_RS04830 PF08546 Ketopantoate reductase PanE/ApbA C terminal LLJ08_RS04835 PF00072 Response regulator receiver domain LLJ08_RS04835 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS04840 PF04461 Protein of unknown function (DUF520) LLJ08_RS04845 PF00924 Mechanosensitive ion channel LLJ08_RS04845 PF05552 Conserved TM helix LLJ08_RS04850 PF07690 Major Facilitator Superfamily LLJ08_RS04855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LLJ08_RS04875 PF04186 FxsA cytoplasmic membrane protein LLJ08_RS04885 PF00166 Chaperonin 10 Kd subunit LLJ08_RS04890 PF00118 TCP-1/cpn60 chaperonin family LLJ08_RS04900 PF00873 AcrB/AcrD/AcrF family LLJ08_RS04905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS04910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS04910 PF00672 HAMP domain LLJ08_RS04935 PF04011 LemA family LLJ08_RS04950 PF00563 EAL domain LLJ08_RS04950 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS04950 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS04955 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LLJ08_RS04955 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LLJ08_RS04960 PF01810 LysE type translocator LLJ08_RS04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS04965 PF03466 LysR substrate binding domain LLJ08_RS04980 PF00657 GDSL-like Lipase/Acylhydrolase LLJ08_RS04980 PF03797 Autotransporter beta-domain LLJ08_RS04985 PF05230 MASE2 domain LLJ08_RS04985 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS04990 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LLJ08_RS04990 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LLJ08_RS05005 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS05005 PF00042 Globin LLJ08_RS05005 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS05015 PF00224 Pyruvate kinase, barrel domain LLJ08_RS05015 PF02887 Pyruvate kinase, alpha/beta domain LLJ08_RS05020 PF13660 Domain of unknown function (DUF4147) LLJ08_RS05020 PF05161 MOFRL family LLJ08_RS05025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LLJ08_RS05025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LLJ08_RS05030 PF01261 Xylose isomerase-like TIM barrel LLJ08_RS05035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LLJ08_RS05035 PF00205 Thiamine pyrophosphate enzyme, central domain LLJ08_RS05035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LLJ08_RS05040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS05040 PF03466 LysR substrate binding domain LLJ08_RS05045 PF00576 HIUase/Transthyretin family LLJ08_RS05055 PF00072 Response regulator receiver domain LLJ08_RS05055 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS05060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS05060 PF00672 HAMP domain LLJ08_RS05060 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS05070 PF13188 PAS domain LLJ08_RS05070 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS05070 PF00563 EAL domain LLJ08_RS05070 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS05080 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS05080 PF08360 QacR-like protein, C-terminal region LLJ08_RS05090 PF00860 Permease family LLJ08_RS05095 PF00999 Sodium/hydrogen exchanger family LLJ08_RS05095 PF02254 TrkA-N domain LLJ08_RS05105 PF04115 Ureidoglycolate lyase LLJ08_RS05110 PF03561 Allantoicase repeat LLJ08_RS05115 PF01014 Uricase LLJ08_RS05115 PF09349 OHCU decarboxylase LLJ08_RS05125 PF00576 HIUase/Transthyretin family LLJ08_RS05135 PF00860 Permease family LLJ08_RS05140 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS05140 PF07729 FCD domain LLJ08_RS05145 PF00005 ABC transporter LLJ08_RS05150 PF00950 ABC 3 transport family LLJ08_RS05155 PF01297 Zinc-uptake complex component A periplasmic LLJ08_RS05160 PF01979 Amidohydrolase family LLJ08_RS05170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LLJ08_RS05170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LLJ08_RS05175 PF01799 [2Fe-2S] binding domain LLJ08_RS05175 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS05180 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LLJ08_RS05180 PF03171 2OG-Fe(II) oxygenase superfamily LLJ08_RS05185 PF02608 ABC transporter substrate-binding protein PnrA-like LLJ08_RS05190 PF01979 Amidohydrolase family LLJ08_RS05200 PF00689 Cation transporting ATPase, C-terminus LLJ08_RS05200 PF00690 Cation transporter/ATPase, N-terminus LLJ08_RS05205 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLJ08_RS05205 PF01464 Transglycosylase SLT domain LLJ08_RS05210 PF01541 GIY-YIG catalytic domain LLJ08_RS05225 PF03976 Polyphosphate kinase 2 (PPK2) LLJ08_RS05230 PF04245 37-kD nucleoid-associated bacterial protein LLJ08_RS05240 PF07690 Major Facilitator Superfamily LLJ08_RS05250 PF05971 RNA methyltransferase LLJ08_RS05255 PF06779 Uncharacterised MFS-type transporter YbfB LLJ08_RS05260 PF02080 TrkA-C domain LLJ08_RS05260 PF03600 Citrate transporter LLJ08_RS05270 PF03600 Citrate transporter LLJ08_RS05275 PF08264 Anticodon-binding domain of tRNA LLJ08_RS05275 PF00133 tRNA synthetases class I (I, L, M and V) LLJ08_RS05275 PF10458 Valyl tRNA synthetase tRNA binding arm LLJ08_RS05285 PF04364 DNA polymerase III chi subunit, HolC LLJ08_RS05290 PF00883 Cytosol aminopeptidase family, catalytic domain LLJ08_RS05290 PF02789 Cytosol aminopeptidase family, N-terminal domain LLJ08_RS05295 PF03739 Lipopolysaccharide export system permease LptF/LptG LLJ08_RS05300 PF03739 Lipopolysaccharide export system permease LptF/LptG LLJ08_RS05310 PF00313 'Cold-shock' DNA-binding domain LLJ08_RS05320 PF02547 Queuosine biosynthesis protein LLJ08_RS05325 PF01702 Queuine tRNA-ribosyltransferase LLJ08_RS05330 PF02699 Preprotein translocase subunit LLJ08_RS05335 PF07549 SecD/SecF GG Motif LLJ08_RS05335 PF13721 SecD export protein N-terminal TM region LLJ08_RS05335 PF02355 Protein export membrane protein LLJ08_RS05340 PF02355 Protein export membrane protein LLJ08_RS05340 PF07549 SecD/SecF GG Motif LLJ08_RS05345 PF05433 Glycine zipper 2TM domain LLJ08_RS05350 PF00459 Inositol monophosphatase family LLJ08_RS05355 PF00588 SpoU rRNA Methylase family LLJ08_RS05360 PF00132 Bacterial transferase hexapeptide (six repeats) LLJ08_RS05365 PF02082 Transcriptional regulator LLJ08_RS05370 PF00266 Aminotransferase class-V LLJ08_RS05375 PF01592 NifU-like N terminal domain LLJ08_RS05380 PF01521 Iron-sulphur cluster biosynthesis LLJ08_RS05385 PF07743 HSCB C-terminal oligomerisation domain LLJ08_RS05385 PF00226 DnaJ domain LLJ08_RS05390 PF00012 Hsp70 protein LLJ08_RS05395 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS05400 PF04384 Iron-sulphur cluster assembly LLJ08_RS05405 PF00334 Nucleoside diphosphate kinase LLJ08_RS05410 PF04055 Radical SAM superfamily LLJ08_RS05425 PF04551 GcpE protein LLJ08_RS05430 PF03129 Anticodon binding domain LLJ08_RS05430 PF13393 Histidyl-tRNA synthetase LLJ08_RS05435 PF09976 Tetratricopeptide repeat-like domain LLJ08_RS05440 PF13360 PQQ-like domain LLJ08_RS05445 PF01926 50S ribosome-binding GTPase LLJ08_RS05445 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LLJ08_RS05450 PF00132 Bacterial transferase hexapeptide (six repeats) LLJ08_RS05450 PF06426 Serine acetyltransferase, N-terminal LLJ08_RS05455 PF00155 Aminotransferase class I and II LLJ08_RS05460 PF00795 Carbon-nitrogen hydrolase LLJ08_RS05470 PF09997 Predicted membrane protein (DUF2238) LLJ08_RS05475 PF04231 Endonuclease I LLJ08_RS05480 PF00892 EamA-like transporter family LLJ08_RS05485 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS05485 PF00107 Zinc-binding dehydrogenase LLJ08_RS05490 PF00682 HMGL-like LLJ08_RS05490 PF08502 LeuA allosteric (dimerisation) domain LLJ08_RS05505 PF00924 Mechanosensitive ion channel LLJ08_RS05515 PF01551 Peptidase family M23 LLJ08_RS05515 PF08525 Opacity-associated protein A N-terminal motif LLJ08_RS05515 PF01476 LysM domain LLJ08_RS05520 PF02601 Exonuclease VII, large subunit LLJ08_RS05520 PF13742 OB-fold nucleic acid binding domain LLJ08_RS05530 PF00478 IMP dehydrogenase / GMP reductase domain LLJ08_RS05530 PF00571 CBS domain LLJ08_RS05535 PF02540 NAD synthase LLJ08_RS05535 PF00958 GMP synthase C terminal domain LLJ08_RS05535 PF00117 Glutamine amidotransferase class-I LLJ08_RS05540 PF00394 Multicopper oxidase LLJ08_RS05540 PF07731 Multicopper oxidase LLJ08_RS05540 PF07732 Multicopper oxidase LLJ08_RS05545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LLJ08_RS05550 PF08402 TOBE domain LLJ08_RS05550 PF00005 ABC transporter LLJ08_RS05555 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LLJ08_RS05555 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LLJ08_RS05560 PF00462 Glutaredoxin LLJ08_RS05575 PF00155 Aminotransferase class I and II LLJ08_RS05580 PF00271 Helicase conserved C-terminal domain LLJ08_RS05580 PF04851 Type III restriction enzyme, res subunit LLJ08_RS05580 PF02151 UvrB/uvrC motif LLJ08_RS05580 PF17757 UvrB interaction domain LLJ08_RS05580 PF12344 Ultra-violet resistance protein B LLJ08_RS05585 PF00749 tRNA synthetases class I (E and Q), catalytic domain LLJ08_RS05620 PF00817 impB/mucB/samB family LLJ08_RS05620 PF11798 IMS family HHH motif LLJ08_RS05645 PF03958 Bacterial type II/III secretion system short domain LLJ08_RS05645 PF00263 Bacterial type II and III secretion system protein LLJ08_RS05650 PF13401 AAA domain LLJ08_RS05650 PF01471 Putative peptidoglycan binding domain LLJ08_RS05660 PF00437 Type II/IV secretion system protein LLJ08_RS05665 PF00482 Type II secretion system (T2SS), protein F LLJ08_RS05670 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS05680 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS05720 PF00005 ABC transporter LLJ08_RS05725 PF12399 Branched-chain amino acid ATP-binding cassette transporter LLJ08_RS05725 PF00005 ABC transporter LLJ08_RS05730 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS05730 PF11862 Domain of unknown function (DUF3382) LLJ08_RS05735 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS05740 PF13458 Periplasmic binding protein LLJ08_RS05750 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS05755 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS05760 PF00005 ABC transporter LLJ08_RS05775 PF02673 Bacitracin resistance protein BacA LLJ08_RS05780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LLJ08_RS05780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LLJ08_RS05785 PF01261 Xylose isomerase-like TIM barrel LLJ08_RS05790 PF07690 Major Facilitator Superfamily LLJ08_RS05795 PF00012 Hsp70 protein LLJ08_RS05805 PF00271 Helicase conserved C-terminal domain LLJ08_RS05805 PF12137 RNA polymerase recycling family C-terminal LLJ08_RS05805 PF00176 SNF2 family N-terminal domain LLJ08_RS05805 PF18339 RapA N-terminal Tudor like domain 1 LLJ08_RS05805 PF18337 RapA N-terminal Tudor like domain LLJ08_RS05825 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LLJ08_RS05825 PF11852 Domain of unknown function (DUF3372) LLJ08_RS05825 PF03714 Bacterial pullanase-associated domain LLJ08_RS05825 PF18494 Pullulanase Ins domain LLJ08_RS05825 PF17967 Pullulanase N2 domain LLJ08_RS05830 PF01575 MaoC like domain LLJ08_RS05835 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS05835 PF00501 AMP-binding enzyme LLJ08_RS05840 PF00501 AMP-binding enzyme LLJ08_RS05840 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS05845 PF17200 Single Cache domain 2 LLJ08_RS05845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS05845 PF00672 HAMP domain LLJ08_RS05850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS05850 PF00672 HAMP domain LLJ08_RS05850 PF17200 Single Cache domain 2 LLJ08_RS05855 PF04389 Peptidase family M28 LLJ08_RS05855 PF02225 PA domain LLJ08_RS05860 PF11898 Domain of unknown function (DUF3418) LLJ08_RS05860 PF04408 Helicase associated domain (HA2) LLJ08_RS05860 PF00271 Helicase conserved C-terminal domain LLJ08_RS05860 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LLJ08_RS05860 PF00270 DEAD/DEAH box helicase LLJ08_RS05870 PF16697 Inner membrane component of T3SS, cytoplasmic domain LLJ08_RS05875 PF00069 Protein kinase domain LLJ08_RS05875 PF03793 PASTA domain LLJ08_RS05885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS05885 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS05890 PF00588 SpoU rRNA Methylase family LLJ08_RS05890 PF08032 RNA 2'-O ribose methyltransferase substrate binding LLJ08_RS05900 PF01728 FtsJ-like methyltransferase LLJ08_RS05910 PF12697 Alpha/beta hydrolase family LLJ08_RS05915 PF01738 Dienelactone hydrolase family LLJ08_RS05920 PF12706 Beta-lactamase superfamily domain LLJ08_RS05935 PF03795 YCII-related domain LLJ08_RS05950 PF07687 Peptidase dimerisation domain LLJ08_RS05950 PF01546 Peptidase family M20/M25/M40 LLJ08_RS05955 PF01230 HIT domain LLJ08_RS05960 PF09084 NMT1/THI5 like LLJ08_RS05970 PF00005 ABC transporter LLJ08_RS05975 PF04286 Protein of unknown function (DUF445) LLJ08_RS05995 PF01810 LysE type translocator LLJ08_RS06015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS06015 PF00672 HAMP domain LLJ08_RS06015 PF12729 Four helix bundle sensory module for signal transduction LLJ08_RS06020 PF00364 Biotin-requiring enzyme LLJ08_RS06020 PF00561 alpha/beta hydrolase fold LLJ08_RS06025 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LLJ08_RS06030 PF07690 Major Facilitator Superfamily LLJ08_RS06035 PF00672 HAMP domain LLJ08_RS06035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS06060 PF03600 Citrate transporter LLJ08_RS06060 PF02080 TrkA-C domain LLJ08_RS06070 PF01272 Transcription elongation factor, GreA/GreB, C-term LLJ08_RS06070 PF03449 Transcription elongation factor, N-terminal LLJ08_RS06075 PF01131 DNA topoisomerase LLJ08_RS06075 PF01751 Toprim domain LLJ08_RS06085 PF00375 Sodium:dicarboxylate symporter family LLJ08_RS06100 PF02661 Fic/DOC family LLJ08_RS06105 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS06110 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS06115 PF00005 ABC transporter LLJ08_RS06120 PF12833 Helix-turn-helix domain LLJ08_RS06120 PF06719 AraC-type transcriptional regulator N-terminus LLJ08_RS06130 PF00106 short chain dehydrogenase LLJ08_RS06140 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS06145 PF00005 ABC transporter LLJ08_RS06150 PF09084 NMT1/THI5 like LLJ08_RS06165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS06165 PF13426 PAS domain LLJ08_RS06165 PF00072 Response regulator receiver domain LLJ08_RS06170 PF00072 Response regulator receiver domain LLJ08_RS06170 PF13188 PAS domain LLJ08_RS06170 PF08448 PAS fold LLJ08_RS06170 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS06170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS06175 PF06745 KaiC LLJ08_RS06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS06215 PF03466 LysR substrate binding domain LLJ08_RS06230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS06230 PF03466 LysR substrate binding domain LLJ08_RS06235 PF00106 short chain dehydrogenase LLJ08_RS06250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS06250 PF13360 PQQ-like domain LLJ08_RS06260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLJ08_RS06260 PF00364 Biotin-requiring enzyme LLJ08_RS06260 PF02817 e3 binding domain LLJ08_RS06265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLJ08_RS06265 PF02817 e3 binding domain LLJ08_RS06265 PF00364 Biotin-requiring enzyme LLJ08_RS06270 PF02780 Transketolase, C-terminal domain LLJ08_RS06270 PF02779 Transketolase, pyrimidine binding domain LLJ08_RS06275 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS06275 PF00107 Zinc-binding dehydrogenase LLJ08_RS06280 PF00676 Dehydrogenase E1 component LLJ08_RS06285 PF05199 GMC oxidoreductase LLJ08_RS06285 PF00732 GMC oxidoreductase LLJ08_RS06295 PF01590 GAF domain LLJ08_RS06295 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS06295 PF00158 Sigma-54 interaction domain LLJ08_RS06305 PF00698 Acyl transferase domain LLJ08_RS06305 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS06305 PF16197 Ketoacyl-synthetase C-terminal extension LLJ08_RS06305 PF00109 Beta-ketoacyl synthase, N-terminal domain LLJ08_RS06305 PF02801 Beta-ketoacyl synthase, C-terminal domain LLJ08_RS06305 PF08659 KR domain LLJ08_RS06305 PF00550 Phosphopantetheine attachment site LLJ08_RS06305 PF14765 Polyketide synthase dehydratase LLJ08_RS06310 PF01170 Putative RNA methylase family UPF0020 LLJ08_RS06310 PF02926 THUMP domain LLJ08_RS06310 PF10672 S-adenosylmethionine-dependent methyltransferase LLJ08_RS06315 PF01497 Periplasmic binding protein LLJ08_RS06320 PF00005 ABC transporter LLJ08_RS06325 PF01032 FecCD transport family LLJ08_RS06330 PF01032 FecCD transport family LLJ08_RS06335 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS06335 PF00593 TonB dependent receptor LLJ08_RS06350 PF08443 RimK-like ATP-grasp domain LLJ08_RS06350 PF18030 RimK PreATP-grasp domain LLJ08_RS06355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS06355 PF03466 LysR substrate binding domain LLJ08_RS06360 PF08362 YcdC-like protein, C-terminal region LLJ08_RS06360 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS06380 PF03783 Curli production assembly/transport component CsgG LLJ08_RS06400 PF01810 LysE type translocator LLJ08_RS06410 PF00106 short chain dehydrogenase LLJ08_RS06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS06415 PF03466 LysR substrate binding domain LLJ08_RS06425 PF08267 Cobalamin-independent synthase, N-terminal domain LLJ08_RS06425 PF01717 Cobalamin-independent synthase, Catalytic domain LLJ08_RS06430 PF01266 FAD dependent oxidoreductase LLJ08_RS06430 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LLJ08_RS06435 PF04073 Aminoacyl-tRNA editing domain LLJ08_RS06440 PF00023 Ankyrin repeat LLJ08_RS06440 PF12796 Ankyrin repeats (3 copies) LLJ08_RS06445 PF12843 Putative quorum-sensing-regulated virulence factor LLJ08_RS06455 PF00034 Cytochrome c LLJ08_RS06460 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS06465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LLJ08_RS06465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LLJ08_RS06470 PF02657 Fe-S metabolism associated domain LLJ08_RS06475 PF00266 Aminotransferase class-V LLJ08_RS06480 PF14602 Hexapeptide repeat of succinyl-transferase LLJ08_RS06480 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LLJ08_RS06485 PF03960 ArsC family LLJ08_RS06505 PF00155 Aminotransferase class I and II LLJ08_RS06520 PF00551 Formyl transferase LLJ08_RS06525 PF00586 AIR synthase related protein, N-terminal domain LLJ08_RS06525 PF02769 AIR synthase related protein, C-terminal domain LLJ08_RS06535 PF01594 AI-2E family transporter LLJ08_RS06540 PF00308 Bacterial dnaA protein LLJ08_RS06550 PF03358 NADPH-dependent FMN reductase LLJ08_RS06555 PF03960 ArsC family LLJ08_RS06560 PF03631 Virulence factor BrkB LLJ08_RS06575 PF00578 AhpC/TSA family LLJ08_RS06590 PF03129 Anticodon binding domain LLJ08_RS06590 PF04073 Aminoacyl-tRNA editing domain LLJ08_RS06590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LLJ08_RS06595 PF03573 outer membrane porin, OprD family LLJ08_RS06605 PF04102 SlyX LLJ08_RS06610 PF00313 'Cold-shock' DNA-binding domain LLJ08_RS06615 PF00210 Ferritin-like domain LLJ08_RS06620 PF02938 GAD domain LLJ08_RS06620 PF00152 tRNA synthetases class II (D, K and N) LLJ08_RS06620 PF01336 OB-fold nucleic acid binding domain LLJ08_RS06625 PF01709 Transcriptional regulator LLJ08_RS06630 PF02075 Crossover junction endodeoxyribonuclease RuvC LLJ08_RS06635 PF01330 RuvA N terminal domain LLJ08_RS06635 PF07499 RuvA, C-terminal domain LLJ08_RS06640 PF17864 RuvB AAA lid domain LLJ08_RS06640 PF05491 RuvB C-terminal winged helix domain LLJ08_RS06640 PF05496 Holliday junction DNA helicase RuvB P-loop domain LLJ08_RS06645 PF03061 Thioesterase superfamily LLJ08_RS06650 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS06655 PF02472 Biopolymer transport protein ExbD/TolR LLJ08_RS06665 PF07676 WD40-like Beta Propeller Repeat LLJ08_RS06665 PF04052 TolB amino-terminal domain LLJ08_RS06670 PF00691 OmpA family LLJ08_RS06675 PF16331 TolA binding protein trimerisation LLJ08_RS06675 PF13525 Outer membrane lipoprotein LLJ08_RS06680 PF04055 Radical SAM superfamily LLJ08_RS06685 PF06508 Queuosine biosynthesis protein QueC LLJ08_RS06695 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LLJ08_RS06695 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LLJ08_RS06700 PF02445 Quinolinate synthetase A protein LLJ08_RS06705 PF01435 Peptidase family M48 LLJ08_RS06710 PF01206 Sulfurtransferase TusA LLJ08_RS06715 PF01594 AI-2E family transporter LLJ08_RS06720 PF00578 AhpC/TSA family LLJ08_RS06725 PF01842 ACT domain LLJ08_RS06730 PF00701 Dihydrodipicolinate synthetase family LLJ08_RS06740 PF01259 SAICAR synthetase LLJ08_RS06750 PF00136 DNA polymerase family B LLJ08_RS06750 PF03104 DNA polymerase family B, exonuclease domain LLJ08_RS06765 PF13617 YnbE-like lipoprotein LLJ08_RS06780 PF02646 RmuC family LLJ08_RS06785 PF13194 Domain of unknown function (DUF4010) LLJ08_RS06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS06790 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS06810 PF07690 Major Facilitator Superfamily LLJ08_RS06815 PF04381 Putative exonuclease, RdgC LLJ08_RS06830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LLJ08_RS06830 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LLJ08_RS06835 PF00210 Ferritin-like domain LLJ08_RS06840 PF04324 BFD-like [2Fe-2S] binding domain LLJ08_RS06845 PF07152 YaeQ protein LLJ08_RS06850 PF01566 Natural resistance-associated macrophage protein LLJ08_RS06855 PF02626 Carboxyltransferase domain, subdomain A and B LLJ08_RS06860 PF02682 Carboxyltransferase domain, subdomain C and D LLJ08_RS06865 PF03746 LamB/YcsF family LLJ08_RS06875 PF01368 DHH family LLJ08_RS06875 PF02272 DHHA1 domain LLJ08_RS06875 PF17768 RecJ OB domain LLJ08_RS06880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLJ08_RS06880 PF01568 Molydopterin dinucleotide binding domain LLJ08_RS06880 PF00384 Molybdopterin oxidoreductase LLJ08_RS06885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLJ08_RS06900 PF01336 OB-fold nucleic acid binding domain LLJ08_RS06900 PF00152 tRNA synthetases class II (D, K and N) LLJ08_RS06925 PF01389 OmpA-like transmembrane domain LLJ08_RS06925 PF00691 OmpA family LLJ08_RS06940 PF00311 Phosphoenolpyruvate carboxylase LLJ08_RS06945 PF05191 Adenylate kinase, active site lid LLJ08_RS06950 PF00814 Glycoprotease family LLJ08_RS06970 PF04445 Putative SAM-dependent methyltransferase LLJ08_RS06975 PF08361 MAATS-type transcriptional repressor, C-terminal region LLJ08_RS06975 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS06980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS06985 PF00873 AcrB/AcrD/AcrF family LLJ08_RS06990 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS07005 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS07005 PF00563 EAL domain LLJ08_RS07005 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS07010 PF00155 Aminotransferase class I and II LLJ08_RS07010 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS07015 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LLJ08_RS07015 PF13746 4Fe-4S dicluster domain LLJ08_RS07015 PF12801 4Fe-4S binding domain LLJ08_RS07020 PF03788 LrgA family LLJ08_RS07025 PF04172 LrgB-like family LLJ08_RS07030 PF02567 Phenazine biosynthesis-like protein LLJ08_RS07035 PF14310 Fibronectin type III-like domain LLJ08_RS07035 PF00933 Glycosyl hydrolase family 3 N terminal domain LLJ08_RS07035 PF01915 Glycosyl hydrolase family 3 C-terminal domain LLJ08_RS07040 PF04349 Periplasmic glucan biosynthesis protein, MdoG LLJ08_RS07045 PF00535 Glycosyl transferase family 2 LLJ08_RS07050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LLJ08_RS07055 PF02678 Pirin LLJ08_RS07055 PF17954 Quercetinase C-terminal cupin domain LLJ08_RS07060 PF03358 NADPH-dependent FMN reductase LLJ08_RS07080 PF05275 Copper resistance protein B precursor (CopB) LLJ08_RS07090 PF00394 Multicopper oxidase LLJ08_RS07090 PF07731 Multicopper oxidase LLJ08_RS07090 PF07732 Multicopper oxidase LLJ08_RS07100 PF00403 Heavy-metal-associated domain LLJ08_RS07105 PF00072 Response regulator receiver domain LLJ08_RS07105 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS07110 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS07110 PF00672 HAMP domain LLJ08_RS07110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS07115 PF08521 Two-component sensor kinase N-terminal LLJ08_RS07115 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS07120 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS07120 PF00072 Response regulator receiver domain LLJ08_RS07125 PF02683 Cytochrome C biogenesis protein transmembrane region LLJ08_RS07125 PF11412 Disulphide bond corrector protein DsbC LLJ08_RS07130 PF00578 AhpC/TSA family LLJ08_RS07135 PF13098 Thioredoxin-like domain LLJ08_RS07155 PF01814 Hemerythrin HHE cation binding domain LLJ08_RS07155 PF04405 Domain of Unknown function (DUF542) LLJ08_RS07160 PF00158 Sigma-54 interaction domain LLJ08_RS07160 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS07170 PF01136 Peptidase family U32 LLJ08_RS07175 PF01136 Peptidase family U32 LLJ08_RS07180 PF02036 SCP-2 sterol transfer family LLJ08_RS07185 PF08859 DGC domain LLJ08_RS07195 PF03477 ATP cone domain LLJ08_RS07195 PF00317 Ribonucleotide reductase, all-alpha domain LLJ08_RS07195 PF02867 Ribonucleotide reductase, barrel domain LLJ08_RS07205 PF04055 Radical SAM superfamily LLJ08_RS07225 PF10634 Fe2+ transport protein LLJ08_RS07230 PF07690 Major Facilitator Superfamily LLJ08_RS07240 PF00920 Dehydratase family LLJ08_RS07245 PF02685 Glucokinase LLJ08_RS07250 PF01380 SIS domain LLJ08_RS07250 PF01418 Helix-turn-helix domain, rpiR family LLJ08_RS07255 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LLJ08_RS07255 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LLJ08_RS07260 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LLJ08_RS07265 PF01081 KDPG and KHG aldolase LLJ08_RS07270 PF00171 Aldehyde dehydrogenase family LLJ08_RS07275 PF00248 Aldo/keto reductase family LLJ08_RS07280 PF00893 Small Multidrug Resistance protein LLJ08_RS07290 PF00176 SNF2 family N-terminal domain LLJ08_RS07290 PF12419 SNF2 Helicase protein LLJ08_RS07290 PF00271 Helicase conserved C-terminal domain LLJ08_RS07300 PF02559 CarD-like/TRCF domain LLJ08_RS07300 PF00271 Helicase conserved C-terminal domain LLJ08_RS07300 PF03461 TRCF domain LLJ08_RS07300 PF17757 UvrB interaction domain LLJ08_RS07300 PF00270 DEAD/DEAH box helicase LLJ08_RS07305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LLJ08_RS07305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LLJ08_RS07310 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LLJ08_RS07310 PF11973 NQRA C-terminal domain LLJ08_RS07315 PF03116 NQR2, RnfD, RnfE family LLJ08_RS07320 PF04205 FMN-binding domain LLJ08_RS07325 PF02508 Rnf-Nqr subunit, membrane protein LLJ08_RS07330 PF02508 Rnf-Nqr subunit, membrane protein LLJ08_RS07335 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS07335 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS07335 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS07340 PF02424 ApbE family LLJ08_RS07350 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS07350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLJ08_RS07355 PF03009 Glycerophosphoryl diester phosphodiesterase family LLJ08_RS07370 PF02687 FtsX-like permease family LLJ08_RS07370 PF12704 MacB-like periplasmic core domain LLJ08_RS07375 PF00005 ABC transporter LLJ08_RS07380 PF02687 FtsX-like permease family LLJ08_RS07380 PF12704 MacB-like periplasmic core domain LLJ08_RS07390 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS07390 PF03772 Competence protein LLJ08_RS07395 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS07405 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LLJ08_RS07410 PF03966 Trm112p-like protein LLJ08_RS07415 PF02348 Cytidylyltransferase LLJ08_RS07420 PF01451 Low molecular weight phosphotyrosine protein phosphatase LLJ08_RS07425 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LLJ08_RS07425 PF01565 FAD binding domain LLJ08_RS07430 PF00575 S1 RNA binding domain LLJ08_RS07430 PF12111 Polyribonucleotide phosphorylase C terminal LLJ08_RS07430 PF10150 Ribonuclease E/G family LLJ08_RS07435 PF01479 S4 domain LLJ08_RS07435 PF00849 RNA pseudouridylate synthase LLJ08_RS07440 PF13419 Haloacid dehalogenase-like hydrolase LLJ08_RS07445 PF06965 Na+/H+ antiporter 1 LLJ08_RS07445 PF01343 Peptidase family S49 LLJ08_RS07450 PF02545 Maf-like protein LLJ08_RS07455 PF02620 Large ribosomal RNA subunit accumulation protein YceD LLJ08_RS07460 PF01783 Ribosomal L32p protein family LLJ08_RS07465 PF02504 Fatty acid synthesis protein LLJ08_RS07470 PF00698 Acyl transferase domain LLJ08_RS07480 PF00550 Phosphopantetheine attachment site LLJ08_RS07485 PF00109 Beta-ketoacyl synthase, N-terminal domain LLJ08_RS07485 PF02801 Beta-ketoacyl synthase, C-terminal domain LLJ08_RS07490 PF01063 Amino-transferase class IV LLJ08_RS07495 PF02618 YceG-like family LLJ08_RS07500 PF02223 Thymidylate kinase LLJ08_RS07505 PF09115 DNA polymerase III, delta subunit, C terminal LLJ08_RS07515 PF01026 TatD related DNase LLJ08_RS07520 PF00324 Amino acid permease LLJ08_RS07525 PF00266 Aminotransferase class-V LLJ08_RS07530 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS07555 PF01012 Electron transfer flavoprotein domain LLJ08_RS07560 PF01012 Electron transfer flavoprotein domain LLJ08_RS07560 PF00766 Electron transfer flavoprotein FAD-binding domain LLJ08_RS07565 PF01336 OB-fold nucleic acid binding domain LLJ08_RS07565 PF00152 tRNA synthetases class II (D, K and N) LLJ08_RS07565 PF02938 GAD domain LLJ08_RS07575 PF05736 OprF membrane domain LLJ08_RS07575 PF00691 OmpA family LLJ08_RS07580 PF00155 Aminotransferase class I and II LLJ08_RS07580 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS07590 PF00563 EAL domain LLJ08_RS07590 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS07590 PF08447 PAS fold LLJ08_RS07590 PF08448 PAS fold LLJ08_RS07600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LLJ08_RS07605 PF16884 N-terminal domain of oxidoreductase LLJ08_RS07605 PF00107 Zinc-binding dehydrogenase LLJ08_RS07615 PF03594 Benzoate membrane transport protein LLJ08_RS07620 PF02049 Flagellar hook-basal body complex protein FliE LLJ08_RS07625 PF08345 Flagellar M-ring protein C-terminal LLJ08_RS07625 PF01514 Secretory protein of YscJ/FliF family LLJ08_RS07630 PF14841 FliG middle domain LLJ08_RS07630 PF14842 FliG N-terminal domain LLJ08_RS07630 PF01706 FliG C-terminal domain LLJ08_RS07640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLJ08_RS07640 PF18269 T3SS EscN ATPase C-terminal domain LLJ08_RS07650 PF13466 STAS domain LLJ08_RS07655 PF00072 Response regulator receiver domain LLJ08_RS07655 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS07675 PF02154 Flagellar motor switch protein FliM LLJ08_RS07675 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LLJ08_RS07680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LLJ08_RS07685 PF04347 Flagellar biosynthesis protein, FliO LLJ08_RS07690 PF00813 FliP family LLJ08_RS07695 PF01313 Bacterial export proteins, family 3 LLJ08_RS07700 PF01311 Bacterial export proteins, family 1 LLJ08_RS07705 PF01312 FlhB HrpN YscU SpaS Family LLJ08_RS07710 PF00080 Copper/zinc superoxide dismutase (SODC) LLJ08_RS07715 PF00771 FHIPEP family LLJ08_RS07720 PF00448 SRP54-type protein, GTPase domain LLJ08_RS07725 PF10609 NUBPL iron-transfer P-loop NTPase LLJ08_RS07730 PF04539 Sigma-70 region 3 LLJ08_RS07730 PF04542 Sigma-70 region 2 LLJ08_RS07730 PF04545 Sigma-70, region 4 LLJ08_RS07735 PF00072 Response regulator receiver domain LLJ08_RS07740 PF04344 Chemotaxis phosphatase, CheZ LLJ08_RS07745 PF01584 CheW-like domain LLJ08_RS07745 PF01627 Hpt domain LLJ08_RS07745 PF00072 Response regulator receiver domain LLJ08_RS07745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS07745 PF02895 Signal transducing histidine kinase, homodimeric domain LLJ08_RS07750 PF01339 CheB methylesterase LLJ08_RS07750 PF00072 Response regulator receiver domain LLJ08_RS07755 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS07760 PF00691 OmpA family LLJ08_RS07760 PF13677 Membrane MotB of proton-channel complex MotA/MotB LLJ08_RS07765 PF13614 AAA domain LLJ08_RS07775 PF01584 CheW-like domain LLJ08_RS07790 PF01312 FlhB HrpN YscU SpaS Family LLJ08_RS07800 PF00005 ABC transporter LLJ08_RS07805 PF03379 CcmB protein LLJ08_RS07810 PF01578 Cytochrome C assembly protein LLJ08_RS07815 PF04995 Heme exporter protein D (CcmD) LLJ08_RS07820 PF03100 CcmE LLJ08_RS07825 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LLJ08_RS07825 PF01578 Cytochrome C assembly protein LLJ08_RS07830 PF08534 Redoxin LLJ08_RS07835 PF03918 Cytochrome C biogenesis protein LLJ08_RS07855 PF06490 Flagellar regulatory protein FleQ LLJ08_RS07855 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS07855 PF00158 Sigma-54 interaction domain LLJ08_RS07860 PF13188 PAS domain LLJ08_RS07860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS07860 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS07865 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS07865 PF00158 Sigma-54 interaction domain LLJ08_RS07865 PF00072 Response regulator receiver domain LLJ08_RS07870 PF05724 Thiopurine S-methyltransferase (TPMT) LLJ08_RS07880 PF01435 Peptidase family M48 LLJ08_RS07890 PF00155 Aminotransferase class I and II LLJ08_RS07895 PF01641 SelR domain LLJ08_RS07900 PF00255 Glutathione peroxidase LLJ08_RS07910 PF00043 Glutathione S-transferase, C-terminal domain LLJ08_RS07910 PF02798 Glutathione S-transferase, N-terminal domain LLJ08_RS07940 PF04143 Sulphur transport LLJ08_RS07955 PF00581 Rhodanese-like domain LLJ08_RS07960 PF01740 STAS domain LLJ08_RS07960 PF00916 Sulfate permease family LLJ08_RS07970 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS07975 PF00005 ABC transporter LLJ08_RS07980 PF12704 MacB-like periplasmic core domain LLJ08_RS07980 PF02687 FtsX-like permease family LLJ08_RS07985 PF13533 Biotin-lipoyl like LLJ08_RS07990 PF02535 ZIP Zinc transporter LLJ08_RS07995 PF13677 Membrane MotB of proton-channel complex MotA/MotB LLJ08_RS07995 PF00691 OmpA family LLJ08_RS08000 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS08005 PF01593 Flavin containing amine oxidoreductase LLJ08_RS08020 PF09285 Elongation factor P, C-terminal LLJ08_RS08020 PF01132 Elongation factor P (EF-P) OB domain LLJ08_RS08020 PF08207 Elongation factor P (EF-P) KOW-like domain LLJ08_RS08025 PF01474 Class-II DAHP synthetase family LLJ08_RS08035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS08035 PF00672 HAMP domain LLJ08_RS08035 PF12729 Four helix bundle sensory module for signal transduction LLJ08_RS08040 PF00270 DEAD/DEAH box helicase LLJ08_RS08040 PF03880 DbpA RNA binding domain LLJ08_RS08040 PF00271 Helicase conserved C-terminal domain LLJ08_RS08045 PF00216 Bacterial DNA-binding protein LLJ08_RS08050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LLJ08_RS08050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LLJ08_RS08050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LLJ08_RS08050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LLJ08_RS08055 PF00483 Nucleotidyl transferase LLJ08_RS08055 PF01050 Mannose-6-phosphate isomerase LLJ08_RS08060 PF00535 Glycosyl transferase family 2 LLJ08_RS08065 PF00535 Glycosyl transferase family 2 LLJ08_RS08065 PF01501 Glycosyl transferase family 8 LLJ08_RS08070 PF01370 NAD dependent epimerase/dehydratase family LLJ08_RS08085 PF00005 ABC transporter LLJ08_RS08090 PF16363 GDP-mannose 4,6 dehydratase LLJ08_RS08095 PF01370 NAD dependent epimerase/dehydratase family LLJ08_RS08100 PF00535 Glycosyl transferase family 2 LLJ08_RS08105 PF13439 Glycosyltransferase Family 4 LLJ08_RS08105 PF00534 Glycosyl transferases group 1 LLJ08_RS08115 PF01370 NAD dependent epimerase/dehydratase family LLJ08_RS08120 PF02397 Bacterial sugar transferase LLJ08_RS08125 PF02719 Polysaccharide biosynthesis protein LLJ08_RS08135 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LLJ08_RS08135 PF01648 4'-phosphopantetheinyl transferase superfamily LLJ08_RS08140 PF03976 Polyphosphate kinase 2 (PPK2) LLJ08_RS08145 PF00108 Thiolase, N-terminal domain LLJ08_RS08145 PF02803 Thiolase, C-terminal domain LLJ08_RS08150 PF02563 Polysaccharide biosynthesis/export protein LLJ08_RS08150 PF10531 SLBB domain LLJ08_RS08150 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LLJ08_RS08155 PF03808 Glycosyl transferase WecB/TagA/CpsF family LLJ08_RS08185 PF00150 Cellulase (glycosyl hydrolase family 5) LLJ08_RS08190 PF13614 AAA domain LLJ08_RS08190 PF13807 G-rich domain on putative tyrosine kinase LLJ08_RS08190 PF02706 Chain length determinant protein LLJ08_RS08195 PF01451 Low molecular weight phosphotyrosine protein phosphatase LLJ08_RS08200 PF02397 Bacterial sugar transferase LLJ08_RS08205 PF00781 Diacylglycerol kinase catalytic domain LLJ08_RS08210 PF00072 Response regulator receiver domain LLJ08_RS08215 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS08215 PF03473 MOSC domain LLJ08_RS08215 PF03476 MOSC N-terminal beta barrel domain LLJ08_RS08220 PF14718 Soluble lytic murein transglycosylase L domain LLJ08_RS08220 PF01464 Transglycosylase SLT domain LLJ08_RS08225 PF12848 ABC transporter LLJ08_RS08225 PF16326 ABC transporter C-terminal domain LLJ08_RS08225 PF00005 ABC transporter LLJ08_RS08235 PF00582 Universal stress protein family LLJ08_RS08245 PF13230 Glutamine amidotransferases class-II LLJ08_RS08265 PF17871 AAA lid domain LLJ08_RS08265 PF02861 Clp amino terminal domain, pathogenicity island component LLJ08_RS08265 PF07724 AAA domain (Cdc48 subfamily) LLJ08_RS08265 PF10431 C-terminal, D2-small domain, of ClpB protein LLJ08_RS08265 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS08275 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS08285 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LLJ08_RS08300 PF04304 Protein of unknown function (DUF454) LLJ08_RS08310 PF00270 DEAD/DEAH box helicase LLJ08_RS08310 PF09382 RQC domain LLJ08_RS08310 PF16124 RecQ zinc-binding LLJ08_RS08310 PF00570 HRDC domain LLJ08_RS08310 PF00271 Helicase conserved C-terminal domain LLJ08_RS08320 PF01734 Patatin-like phospholipase LLJ08_RS08335 PF12833 Helix-turn-helix domain LLJ08_RS08340 PF00211 Adenylate and Guanylate cyclase catalytic domain LLJ08_RS08350 PF12833 Helix-turn-helix domain LLJ08_RS08350 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LLJ08_RS08355 PF05661 Protein of unknown function (DUF808) LLJ08_RS08360 PF02386 Cation transport protein LLJ08_RS08365 PF03692 Putative zinc- or iron-chelating domain LLJ08_RS08370 PF00881 Nitroreductase family LLJ08_RS08375 PF00672 HAMP domain LLJ08_RS08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS08375 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS08375 PF16750 Sensor domain of 2-component histidine kinase LLJ08_RS08385 PF00072 Response regulator receiver domain LLJ08_RS08385 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS08395 PF03795 YCII-related domain LLJ08_RS08400 PF02811 PHP domain LLJ08_RS08405 PF01300 Telomere recombination LLJ08_RS08410 PF00579 tRNA synthetases class I (W and Y) LLJ08_RS08415 PF02616 Segregation and condensation protein ScpA LLJ08_RS08420 PF04079 Segregation and condensation complex subunit ScpB LLJ08_RS08425 PF00920 Dehydratase family LLJ08_RS08430 PF02685 Glucokinase LLJ08_RS08435 PF00072 Response regulator receiver domain LLJ08_RS08435 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS08440 PF00672 HAMP domain LLJ08_RS08440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS08440 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS08445 PF01547 Bacterial extracellular solute-binding protein LLJ08_RS08450 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS08455 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS08460 PF00005 ABC transporter LLJ08_RS08460 PF08402 TOBE domain LLJ08_RS08465 PF02264 LamB porin LLJ08_RS08480 PF01264 Chorismate synthase LLJ08_RS08490 PF00596 Class II Aldolase and Adducin N-terminal domain LLJ08_RS08495 PF03079 ARD/ARD' family LLJ08_RS08520 PF12833 Helix-turn-helix domain LLJ08_RS08520 PF00730 HhH-GPD superfamily base excision DNA repair protein LLJ08_RS08520 PF06029 AlkA N-terminal domain LLJ08_RS08520 PF02805 Metal binding domain of Ada LLJ08_RS08525 PF17284 Spermidine synthase tetramerisation domain LLJ08_RS08535 PF03466 LysR substrate binding domain LLJ08_RS08535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS08555 PF01513 ATP-NAD kinase LLJ08_RS08560 PF00149 Calcineurin-like phosphoesterase LLJ08_RS08565 PF01694 Rhomboid family LLJ08_RS08565 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LLJ08_RS08580 PF11940 Domain of unknown function (DUF3458) Ig-like fold LLJ08_RS08580 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LLJ08_RS08580 PF01433 Peptidase family M1 domain LLJ08_RS08585 PF14870 Photosynthesis system II assembly factor YCF48 LLJ08_RS08595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LLJ08_RS08600 PF04324 BFD-like [2Fe-2S] binding domain LLJ08_RS08600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLJ08_RS08600 PF00384 Molybdopterin oxidoreductase LLJ08_RS08600 PF01568 Molydopterin dinucleotide binding domain LLJ08_RS08605 PF00355 Rieske [2Fe-2S] domain LLJ08_RS08610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LLJ08_RS08610 PF04324 BFD-like [2Fe-2S] binding domain LLJ08_RS08610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LLJ08_RS08610 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS08610 PF18267 Rubredoxin NAD+ reductase C-terminal domain LLJ08_RS08620 PF00069 Protein kinase domain LLJ08_RS08620 PF03793 PASTA domain LLJ08_RS08625 PF07690 Major Facilitator Superfamily LLJ08_RS08630 PF00294 pfkB family carbohydrate kinase LLJ08_RS08650 PF00072 Response regulator receiver domain LLJ08_RS08650 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS08665 PF07584 Aerotolerance regulator N-terminal LLJ08_RS08665 PF00092 von Willebrand factor type A domain LLJ08_RS08680 PF01882 Protein of unknown function DUF58 LLJ08_RS08685 PF07726 ATPase family associated with various cellular activities (AAA) LLJ08_RS08685 PF17863 AAA lid domain LLJ08_RS08690 PF05088 Bacterial NAD-glutamate dehydrogenase LLJ08_RS08705 PF01180 Dihydroorotate dehydrogenase LLJ08_RS08710 PF04957 Ribosome modulation factor LLJ08_RS08715 PF02926 THUMP domain LLJ08_RS08715 PF01170 Putative RNA methylase family UPF0020 LLJ08_RS08715 PF10672 S-adenosylmethionine-dependent methyltransferase LLJ08_RS08720 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LLJ08_RS08725 PF04320 Protein with unknown function (DUF469) LLJ08_RS08735 PF01966 HD domain LLJ08_RS08755 PF03573 outer membrane porin, OprD family LLJ08_RS08775 PF12804 MobA-like NTP transferase domain LLJ08_RS08800 PF01266 FAD dependent oxidoreductase LLJ08_RS08810 PF02824 TGS domain LLJ08_RS08810 PF03129 Anticodon binding domain LLJ08_RS08810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LLJ08_RS08810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LLJ08_RS08815 PF05198 Translation initiation factor IF-3, N-terminal domain LLJ08_RS08815 PF00707 Translation initiation factor IF-3, C-terminal domain LLJ08_RS08820 PF01632 Ribosomal protein L35 LLJ08_RS08825 PF00453 Ribosomal protein L20 LLJ08_RS08830 PF01409 tRNA synthetases class II core domain (F) LLJ08_RS08830 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LLJ08_RS08835 PF03483 B3/4 domain LLJ08_RS08835 PF03484 tRNA synthetase B5 domain LLJ08_RS08835 PF03147 Ferredoxin-fold anticodon binding domain LLJ08_RS08835 PF01588 Putative tRNA binding domain LLJ08_RS08835 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LLJ08_RS08840 PF00216 Bacterial DNA-binding protein LLJ08_RS08855 PF03743 Bacterial conjugation TrbI-like protein LLJ08_RS08880 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LLJ08_RS08895 PF00437 Type II/IV secretion system protein LLJ08_RS08905 PF02534 Type IV secretory system Conjugative DNA transfer LLJ08_RS08930 PF12826 Helix-hairpin-helix motif LLJ08_RS08930 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LLJ08_RS08930 PF03120 NAD-dependent DNA ligase OB-fold domain LLJ08_RS08930 PF01653 NAD-dependent DNA ligase adenylation domain LLJ08_RS08930 PF00533 BRCA1 C Terminus (BRCT) domain LLJ08_RS08955 PF03466 LysR substrate binding domain LLJ08_RS08955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS08965 PF00733 Asparagine synthase LLJ08_RS08965 PF13537 Glutamine amidotransferase domain LLJ08_RS08980 PF00155 Aminotransferase class I and II LLJ08_RS08985 PF02929 Beta galactosidase small chain LLJ08_RS08985 PF16353 Domain of unknown function(DUF4981) LLJ08_RS08985 PF00703 Glycosyl hydrolases family 2 LLJ08_RS08985 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LLJ08_RS08985 PF02837 Glycosyl hydrolases family 2, sugar binding domain LLJ08_RS09005 PF13614 AAA domain LLJ08_RS09025 PF01865 Protein of unknown function DUF47 LLJ08_RS09045 PF02599 Global regulator protein family LLJ08_RS09055 PF02586 SOS response associated peptidase (SRAP) LLJ08_RS09060 PF02811 PHP domain LLJ08_RS09060 PF01336 OB-fold nucleic acid binding domain LLJ08_RS09060 PF14579 Helix-hairpin-helix motif LLJ08_RS09060 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LLJ08_RS09060 PF07733 Bacterial DNA polymerase III alpha NTPase domain LLJ08_RS09065 PF04231 Endonuclease I LLJ08_RS09070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS09070 PF00072 Response regulator receiver domain LLJ08_RS09070 PF13426 PAS domain LLJ08_RS09110 PF00664 ABC transporter transmembrane region LLJ08_RS09110 PF00005 ABC transporter LLJ08_RS09115 PF12706 Beta-lactamase superfamily domain LLJ08_RS09120 PF02311 AraC-like ligand binding domain LLJ08_RS09120 PF12833 Helix-turn-helix domain LLJ08_RS09125 PF00857 Isochorismatase family LLJ08_RS09130 PF01965 DJ-1/PfpI family LLJ08_RS09140 PF00005 ABC transporter LLJ08_RS09145 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS09150 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLJ08_RS09155 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS09160 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS09160 PF03472 Autoinducer binding domain LLJ08_RS09180 PF00692 dUTPase LLJ08_RS09190 PF00692 dUTPase LLJ08_RS09205 PF00350 Dynamin family LLJ08_RS09210 PF00350 Dynamin family LLJ08_RS09255 PF02899 Phage integrase, N-terminal SAM-like domain LLJ08_RS09255 PF00589 Phage integrase family LLJ08_RS09285 PF03852 DNA mismatch endonuclease Vsr LLJ08_RS09290 PF00145 C-5 cytosine-specific DNA methylase LLJ08_RS09295 PF08676 MutL C terminal dimerisation domain LLJ08_RS09295 PF01119 DNA mismatch repair protein, C-terminal domain LLJ08_RS09360 PF01434 Peptidase family M41 LLJ08_RS09360 PF17862 AAA+ lid domain LLJ08_RS09360 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS09375 PF07690 Major Facilitator Superfamily LLJ08_RS09380 PF01636 Phosphotransferase enzyme family LLJ08_RS09385 PF00376 MerR family regulatory protein LLJ08_RS09385 PF09278 MerR, DNA binding LLJ08_RS09415 PF12833 Helix-turn-helix domain LLJ08_RS09415 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LLJ08_RS09420 PF00171 Aldehyde dehydrogenase family LLJ08_RS09425 PF04346 Ethanolamine utilisation protein, EutH LLJ08_RS09430 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LLJ08_RS09435 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LLJ08_RS09440 PF01590 GAF domain LLJ08_RS09440 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS09440 PF00158 Sigma-54 interaction domain LLJ08_RS09445 PF00171 Aldehyde dehydrogenase family LLJ08_RS09450 PF13360 PQQ-like domain LLJ08_RS09450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS09455 PF00593 TonB dependent receptor LLJ08_RS09455 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS09460 PF02887 Pyruvate kinase, alpha/beta domain LLJ08_RS09460 PF00224 Pyruvate kinase, barrel domain LLJ08_RS09465 PF04608 Phosphatidylglycerophosphatase A LLJ08_RS09470 PF00999 Sodium/hydrogen exchanger family LLJ08_RS09470 PF03471 Transporter associated domain LLJ08_RS09470 PF02080 TrkA-C domain LLJ08_RS09480 PF00027 Cyclic nucleotide-binding domain LLJ08_RS09480 PF00325 Bacterial regulatory proteins, crp family LLJ08_RS09485 PF04002 RadC-like JAB domain LLJ08_RS09495 PF05284 Protein of unknown function (DUF736) LLJ08_RS09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS09500 PF00672 HAMP domain LLJ08_RS09520 PF14579 Helix-hairpin-helix motif LLJ08_RS09520 PF07733 Bacterial DNA polymerase III alpha NTPase domain LLJ08_RS09520 PF02811 PHP domain LLJ08_RS09520 PF01336 OB-fold nucleic acid binding domain LLJ08_RS09520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LLJ08_RS09535 PF01008 Initiation factor 2 subunit family LLJ08_RS09540 PF03989 DNA gyrase C-terminal domain, beta-propeller LLJ08_RS09540 PF00521 DNA gyrase/topoisomerase IV, subunit A LLJ08_RS09545 PF00266 Aminotransferase class-V LLJ08_RS09550 PF01842 ACT domain LLJ08_RS09550 PF01817 Chorismate mutase type II LLJ08_RS09550 PF00800 Prephenate dehydratase LLJ08_RS09555 PF00155 Aminotransferase class I and II LLJ08_RS09560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LLJ08_RS09565 PF02224 Cytidylate kinase LLJ08_RS09570 PF00575 S1 RNA binding domain LLJ08_RS09580 PF00155 Aminotransferase class I and II LLJ08_RS09585 PF02798 Glutathione S-transferase, N-terminal domain LLJ08_RS09590 PF01227 GTP cyclohydrolase I LLJ08_RS09595 PF01713 Smr domain LLJ08_RS09605 PF05175 Methyltransferase small domain LLJ08_RS09610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LLJ08_RS09610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LLJ08_RS09615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LLJ08_RS09620 PF01081 KDPG and KHG aldolase LLJ08_RS09625 PF00849 RNA pseudouridylate synthase LLJ08_RS09625 PF01479 S4 domain LLJ08_RS09630 PF00106 short chain dehydrogenase LLJ08_RS09635 PF13419 Haloacid dehalogenase-like hydrolase LLJ08_RS09645 PF01979 Amidohydrolase family LLJ08_RS09680 PF01242 6-pyruvoyl tetrahydropterin synthase LLJ08_RS09685 PF13726 Na+-H+ antiporter family LLJ08_RS09685 PF03553 Na+/H+ antiporter family LLJ08_RS09690 PF01594 AI-2E family transporter LLJ08_RS09700 PF00463 Isocitrate lyase family LLJ08_RS09715 PF13673 Acetyltransferase (GNAT) domain LLJ08_RS09720 PF08007 Cupin superfamily protein LLJ08_RS09725 PF08328 Adenylosuccinate lyase C-terminal LLJ08_RS09725 PF00206 Lyase LLJ08_RS09730 PF04356 Protein of unknown function (DUF489) LLJ08_RS09740 PF00293 NUDIX domain LLJ08_RS09745 PF03971 Monomeric isocitrate dehydrogenase LLJ08_RS09750 PF00180 Isocitrate/isopropylmalate dehydrogenase LLJ08_RS09760 PF02617 ATP-dependent Clp protease adaptor protein ClpS LLJ08_RS09765 PF17871 AAA lid domain LLJ08_RS09765 PF10431 C-terminal, D2-small domain, of ClpB protein LLJ08_RS09765 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS09765 PF07724 AAA domain (Cdc48 subfamily) LLJ08_RS09765 PF02861 Clp amino terminal domain, pathogenicity island component LLJ08_RS09770 PF01176 Translation initiation factor 1A / IF-1 LLJ08_RS09775 PF04377 Arginine-tRNA-protein transferase, C terminus LLJ08_RS09775 PF04376 Arginine-tRNA-protein transferase, N terminus LLJ08_RS09780 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LLJ08_RS09785 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS09790 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LLJ08_RS09790 PF17854 FtsK alpha domain LLJ08_RS09790 PF09397 Ftsk gamma domain LLJ08_RS09790 PF01580 FtsK/SpoIIIE family LLJ08_RS09795 PF03548 Outer membrane lipoprotein carrier protein LolA LLJ08_RS09800 PF12002 MgsA AAA+ ATPase C terminal LLJ08_RS09800 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS09800 PF16193 AAA C-terminal domain LLJ08_RS09805 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LLJ08_RS09810 PF02403 Seryl-tRNA synthetase N-terminal domain LLJ08_RS09810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LLJ08_RS09815 PF10414 Sirohaem synthase dimerisation region LLJ08_RS09815 PF14824 Sirohaem biosynthesis protein central LLJ08_RS09815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LLJ08_RS09820 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS09820 PF00072 Response regulator receiver domain LLJ08_RS09835 PF00005 ABC transporter LLJ08_RS09855 PF00672 HAMP domain LLJ08_RS09855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS09865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS09865 PF07730 Histidine kinase LLJ08_RS09865 PF05231 MASE1 LLJ08_RS09870 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS09870 PF00072 Response regulator receiver domain LLJ08_RS09890 PF13426 PAS domain LLJ08_RS09890 PF08447 PAS fold LLJ08_RS09890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS09900 PF13360 PQQ-like domain LLJ08_RS09900 PF01011 PQQ enzyme repeat LLJ08_RS09905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS09920 PF16123 Hydroxyacylglutathione hydrolase C-terminus LLJ08_RS09920 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS09930 PF01011 PQQ enzyme repeat LLJ08_RS09930 PF13360 PQQ-like domain LLJ08_RS09935 PF12833 Helix-turn-helix domain LLJ08_RS09950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LLJ08_RS09950 PF00005 ABC transporter LLJ08_RS09955 PF12911 N-terminal TM domain of oligopeptide transport permease C LLJ08_RS09955 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS09960 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS09965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLJ08_RS09970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LLJ08_RS09980 PF01476 LysM domain LLJ08_RS09980 PF01464 Transglycosylase SLT domain LLJ08_RS09985 PF16123 Hydroxyacylglutathione hydrolase C-terminus LLJ08_RS09985 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS09995 PF00075 RNase H LLJ08_RS10000 PF00929 Exonuclease LLJ08_RS10005 PF01276 Orn/Lys/Arg decarboxylase, major domain LLJ08_RS10005 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LLJ08_RS10005 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LLJ08_RS10010 PF00378 Enoyl-CoA hydratase/isomerase LLJ08_RS10020 PF09297 NADH pyrophosphatase zinc ribbon domain LLJ08_RS10020 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LLJ08_RS10020 PF00293 NUDIX domain LLJ08_RS10025 PF01925 Sulfite exporter TauE/SafE LLJ08_RS10055 PF01343 Peptidase family S49 LLJ08_RS10055 PF08496 Peptidase family S49 N-terminal LLJ08_RS10060 PF00107 Zinc-binding dehydrogenase LLJ08_RS10060 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS10070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LLJ08_RS10070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LLJ08_RS10080 PF00011 Hsp20/alpha crystallin family LLJ08_RS10090 PF00069 Protein kinase domain LLJ08_RS10095 PF04055 Radical SAM superfamily LLJ08_RS10100 PF07690 Major Facilitator Superfamily LLJ08_RS10130 PF00809 Pterin binding enzyme LLJ08_RS10130 PF02965 Vitamin B12 dependent methionine synthase, activation domain LLJ08_RS10130 PF02574 Homocysteine S-methyltransferase LLJ08_RS10130 PF02310 B12 binding domain LLJ08_RS10130 PF02607 B12 binding domain LLJ08_RS10140 PF01521 Iron-sulphur cluster biosynthesis LLJ08_RS10140 PF01106 NifU-like domain LLJ08_RS10145 PF00072 Response regulator receiver domain LLJ08_RS10145 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS10150 PF05230 MASE2 domain LLJ08_RS10150 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS10165 PF04239 Protein of unknown function (DUF421) LLJ08_RS10180 PF00672 HAMP domain LLJ08_RS10180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS10180 PF17200 Single Cache domain 2 LLJ08_RS10185 PF02673 Bacitracin resistance protein BacA LLJ08_RS10190 PF00561 alpha/beta hydrolase fold LLJ08_RS10195 PF00005 ABC transporter LLJ08_RS10195 PF12848 ABC transporter LLJ08_RS10200 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS10200 PF00593 TonB dependent receptor LLJ08_RS10215 PF01266 FAD dependent oxidoreductase LLJ08_RS10220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS10220 PF03466 LysR substrate binding domain LLJ08_RS10225 PF03969 AFG1-like ATPase LLJ08_RS10240 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLJ08_RS10245 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS10250 PF00356 Bacterial regulatory proteins, lacI family LLJ08_RS10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS10255 PF03466 LysR substrate binding domain LLJ08_RS10260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS10260 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS10260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS10265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LLJ08_RS10265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LLJ08_RS10270 PF01232 Mannitol dehydrogenase Rossmann domain LLJ08_RS10270 PF08125 Mannitol dehydrogenase C-terminal domain LLJ08_RS10275 PF17912 MalK OB fold domain LLJ08_RS10275 PF00005 ABC transporter LLJ08_RS10280 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS10285 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS10300 PF00294 pfkB family carbohydrate kinase LLJ08_RS10305 PF12849 PBP superfamily domain LLJ08_RS10310 PF03372 Endonuclease/Exonuclease/phosphatase family LLJ08_RS10320 PF01103 Surface antigen LLJ08_RS10320 PF17243 POTRA domain TamA domain 1 LLJ08_RS10320 PF07244 Surface antigen variable number repeat LLJ08_RS10325 PF04357 TamB, inner membrane protein subunit of TAM complex LLJ08_RS10330 PF01235 Sodium:alanine symporter family LLJ08_RS10335 PF08534 Redoxin LLJ08_RS10345 PF03023 Lipid II flippase MurJ LLJ08_RS10350 PF13533 Biotin-lipoyl like LLJ08_RS10355 PF00873 AcrB/AcrD/AcrF family LLJ08_RS10360 PF00873 AcrB/AcrD/AcrF family LLJ08_RS10365 PF02321 Outer membrane efflux protein LLJ08_RS10370 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS10375 PF02321 Outer membrane efflux protein LLJ08_RS10380 PF00873 AcrB/AcrD/AcrF family LLJ08_RS10385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS10390 PF03466 LysR substrate binding domain LLJ08_RS10395 PF00698 Acyl transferase domain LLJ08_RS10395 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS10395 PF16197 Ketoacyl-synthetase C-terminal extension LLJ08_RS10395 PF00109 Beta-ketoacyl synthase, N-terminal domain LLJ08_RS10395 PF02801 Beta-ketoacyl synthase, C-terminal domain LLJ08_RS10395 PF08659 KR domain LLJ08_RS10395 PF00550 Phosphopantetheine attachment site LLJ08_RS10395 PF14765 Polyketide synthase dehydratase LLJ08_RS10405 PF02735 Ku70/Ku80 beta-barrel domain LLJ08_RS10410 PF01068 ATP dependent DNA ligase domain LLJ08_RS10410 PF04679 ATP dependent DNA ligase C terminal region LLJ08_RS10410 PF13298 DNA polymerase Ligase (LigD) LLJ08_RS10420 PF00128 Alpha amylase, catalytic domain LLJ08_RS10420 PF11896 Domain of unknown function (DUF3416) LLJ08_RS10425 PF00128 Alpha amylase, catalytic domain LLJ08_RS10425 PF16657 Maltogenic Amylase, C-terminal domain LLJ08_RS10430 PF00128 Alpha amylase, catalytic domain LLJ08_RS10430 PF02806 Alpha amylase, C-terminal all-beta domain LLJ08_RS10430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LLJ08_RS10435 PF03706 Lysylphosphatidylglycerol synthase TM region LLJ08_RS10440 PF13091 PLD-like domain LLJ08_RS10445 PF03372 Endonuclease/Exonuclease/phosphatase family LLJ08_RS10455 PF03466 LysR substrate binding domain LLJ08_RS10455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS10460 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LLJ08_RS10470 PF01476 LysM domain LLJ08_RS10470 PF08525 Opacity-associated protein A N-terminal motif LLJ08_RS10470 PF01551 Peptidase family M23 LLJ08_RS10475 PF00128 Alpha amylase, catalytic domain LLJ08_RS10475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LLJ08_RS10485 PF00128 Alpha amylase, catalytic domain LLJ08_RS10490 PF02446 4-alpha-glucanotransferase LLJ08_RS10495 PF00128 Alpha amylase, catalytic domain LLJ08_RS10495 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LLJ08_RS10495 PF11941 Domain of unknown function (DUF3459) LLJ08_RS10500 PF08323 Starch synthase catalytic domain LLJ08_RS10500 PF00534 Glycosyl transferases group 1 LLJ08_RS10505 PF00994 Probable molybdopterin binding domain LLJ08_RS10505 PF02464 Competence-damaged protein LLJ08_RS10505 PF18146 Damage-inducible protein CinA KH domain LLJ08_RS10510 PF12795 Mechanosensitive ion channel porin domain LLJ08_RS10510 PF12794 Mechanosensitive ion channel inner membrane domain 1 LLJ08_RS10510 PF00924 Mechanosensitive ion channel LLJ08_RS10515 PF05974 Domain of unknown function (DUF892) LLJ08_RS10535 PF13298 DNA polymerase Ligase (LigD) LLJ08_RS10535 PF01068 ATP dependent DNA ligase domain LLJ08_RS10535 PF04679 ATP dependent DNA ligase C terminal region LLJ08_RS10545 PF07759 Protein of unknown function (DUF1615) LLJ08_RS10555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS10555 PF03466 LysR substrate binding domain LLJ08_RS10560 PF02321 Outer membrane efflux protein LLJ08_RS10565 PF13533 Biotin-lipoyl like LLJ08_RS10570 PF07869 Protein of unknown function (DUF1656) LLJ08_RS10575 PF04632 Fusaric acid resistance protein family LLJ08_RS10585 PF01219 Prokaryotic diacylglycerol kinase LLJ08_RS10610 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS10610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLJ08_RS10615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLJ08_RS10620 PF00483 Nucleotidyl transferase LLJ08_RS10625 PF00672 HAMP domain LLJ08_RS10625 PF12729 Four helix bundle sensory module for signal transduction LLJ08_RS10625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS10630 PF06969 HemN C-terminal domain LLJ08_RS10630 PF04055 Radical SAM superfamily LLJ08_RS10635 PF18081 Fanconi anemia-associated nuclease SAP domain LLJ08_RS10635 PF08774 VRR-NUC domain LLJ08_RS10650 PF09722 Protein of unknown function (DUF2384) LLJ08_RS10675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LLJ08_RS10675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LLJ08_RS10680 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LLJ08_RS10690 PF03358 NADPH-dependent FMN reductase LLJ08_RS10695 PF01451 Low molecular weight phosphotyrosine protein phosphatase LLJ08_RS10700 PF01022 Bacterial regulatory protein, arsR family LLJ08_RS10705 PF01451 Low molecular weight phosphotyrosine protein phosphatase LLJ08_RS10715 PF01758 Sodium Bile acid symporter family LLJ08_RS10750 PF01066 CDP-alcohol phosphatidyltransferase LLJ08_RS10755 PF01541 GIY-YIG catalytic domain LLJ08_RS10755 PF02151 UvrB/uvrC motif LLJ08_RS10755 PF08459 UvrC Helix-hairpin-helix N-terminal LLJ08_RS10760 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS10760 PF00072 Response regulator receiver domain LLJ08_RS10770 PF00873 AcrB/AcrD/AcrF family LLJ08_RS10775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LLJ08_RS10775 PF00529 HlyD membrane-fusion protein of T1SS LLJ08_RS10790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS10790 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS10790 PF09456 RcsC Alpha-Beta-Loop (ABL) LLJ08_RS10790 PF00072 Response regulator receiver domain LLJ08_RS10795 PF00465 Iron-containing alcohol dehydrogenase LLJ08_RS10800 PF00326 Prolyl oligopeptidase family LLJ08_RS10805 PF13186 Iron-sulfur cluster-binding domain LLJ08_RS10805 PF04055 Radical SAM superfamily LLJ08_RS10810 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LLJ08_RS10815 PF03070 TENA/THI-4/PQQC family LLJ08_RS10820 PF12706 Beta-lactamase superfamily domain LLJ08_RS10825 PF08042 PqqA family LLJ08_RS10830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLJ08_RS10830 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS10835 PF00171 Aldehyde dehydrogenase family LLJ08_RS10845 PF05402 Coenzyme PQQ synthesis protein D (PqqD) LLJ08_RS10850 PF13186 Iron-sulfur cluster-binding domain LLJ08_RS10850 PF04055 Radical SAM superfamily LLJ08_RS10860 PF00266 Aminotransferase class-V LLJ08_RS10865 PF01180 Dihydroorotate dehydrogenase LLJ08_RS10870 PF09312 SurA N-terminal domain LLJ08_RS10875 PF00216 Bacterial DNA-binding protein LLJ08_RS10880 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS10880 PF02190 ATP-dependent protease La (LON) substrate-binding domain LLJ08_RS10880 PF05362 Lon protease (S16) C-terminal proteolytic domain LLJ08_RS10885 PF06689 ClpX C4-type zinc finger LLJ08_RS10885 PF07724 AAA domain (Cdc48 subfamily) LLJ08_RS10885 PF10431 C-terminal, D2-small domain, of ClpB protein LLJ08_RS10890 PF00574 Clp protease LLJ08_RS10895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LLJ08_RS10895 PF05698 Bacterial trigger factor protein (TF) C-terminus LLJ08_RS10895 PF05697 Bacterial trigger factor protein (TF) LLJ08_RS10905 PF07728 AAA domain (dynein-related subfamily) LLJ08_RS10905 PF08406 CbbQ/NirQ/NorQ C-terminal LLJ08_RS10910 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLJ08_RS10915 PF00034 Cytochrome c LLJ08_RS10920 PF07732 Multicopper oxidase LLJ08_RS10925 PF01047 MarR family LLJ08_RS10930 PF02566 OsmC-like protein LLJ08_RS10940 PF16750 Sensor domain of 2-component histidine kinase LLJ08_RS10940 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS10940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS10940 PF00672 HAMP domain LLJ08_RS10945 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS10945 PF00072 Response regulator receiver domain LLJ08_RS10955 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS10955 PF07729 FCD domain LLJ08_RS10980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LLJ08_RS10980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LLJ08_RS10985 PF09190 DALR domain LLJ08_RS10985 PF01406 tRNA synthetases class I (C) catalytic domain LLJ08_RS10990 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LLJ08_RS10990 PF00749 tRNA synthetases class I (E and Q), catalytic domain LLJ08_RS10995 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LLJ08_RS11000 PF00149 Calcineurin-like phosphoesterase LLJ08_RS11005 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LLJ08_RS11020 PF00330 Aconitase family (aconitate hydratase) LLJ08_RS11020 PF06434 Aconitate hydratase 2 N-terminus LLJ08_RS11020 PF11791 Aconitate B N-terminal domain LLJ08_RS11025 PF05736 OprF membrane domain LLJ08_RS11025 PF00691 OmpA family LLJ08_RS11035 PF05552 Conserved TM helix LLJ08_RS11045 PF01544 CorA-like Mg2+ transporter protein LLJ08_RS11050 PF03737 Aldolase/RraA LLJ08_RS11055 PF00391 PEP-utilising enzyme, mobile domain LLJ08_RS11055 PF02896 PEP-utilising enzyme, TIM barrel domain LLJ08_RS11055 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LLJ08_RS11060 PF03618 Kinase/pyrophosphorylase LLJ08_RS11065 PF04303 PrpF protein LLJ08_RS11070 PF00330 Aconitase family (aconitate hydratase) LLJ08_RS11070 PF00694 Aconitase C-terminal domain LLJ08_RS11075 PF00285 Citrate synthase, C-terminal domain LLJ08_RS11085 PF07729 FCD domain LLJ08_RS11085 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS11105 PF04715 Anthranilate synthase component I, N terminal region LLJ08_RS11105 PF00425 chorismate binding enzyme LLJ08_RS11115 PF01507 Phosphoadenosine phosphosulfate reductase family LLJ08_RS11120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS11120 PF03466 LysR substrate binding domain LLJ08_RS11125 PF02558 Ketopantoate reductase PanE/ApbA LLJ08_RS11125 PF08546 Ketopantoate reductase PanE/ApbA C terminal LLJ08_RS11130 PF00793 DAHP synthetase I family LLJ08_RS11140 PF11839 Alanine-zipper, major outer membrane lipoprotein LLJ08_RS11145 PF03734 L,D-transpeptidase catalytic domain LLJ08_RS11145 PF17969 L,D-transpeptidase C-terminal domain LLJ08_RS11155 PF13472 GDSL-like Lipase/Acylhydrolase family LLJ08_RS11160 PF00005 ABC transporter LLJ08_RS11170 PF03449 Transcription elongation factor, N-terminal LLJ08_RS11170 PF01272 Transcription elongation factor, GreA/GreB, C-term LLJ08_RS11175 PF00561 alpha/beta hydrolase fold LLJ08_RS11180 PF03280 Proteobacterial lipase chaperone protein LLJ08_RS11185 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLJ08_RS11185 PF01464 Transglycosylase SLT domain LLJ08_RS11190 PF01026 TatD related DNase LLJ08_RS11195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS11195 PF00672 HAMP domain LLJ08_RS11195 PF12729 Four helix bundle sensory module for signal transduction LLJ08_RS11205 PF08402 TOBE domain LLJ08_RS11205 PF00005 ABC transporter LLJ08_RS11210 PF09347 Domain of unknown function (DUF1989) LLJ08_RS11220 PF00364 Biotin-requiring enzyme LLJ08_RS11220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLJ08_RS11220 PF02785 Biotin carboxylase C-terminal domain LLJ08_RS11220 PF18140 Propionyl-coenzyme A carboxylase BT domain LLJ08_RS11220 PF00289 Biotin carboxylase, N-terminal domain LLJ08_RS11225 PF01425 Amidase LLJ08_RS11230 PF00924 Mechanosensitive ion channel LLJ08_RS11240 PF09084 NMT1/THI5 like LLJ08_RS11265 PF02633 Creatinine amidohydrolase LLJ08_RS11270 PF00857 Isochorismatase family LLJ08_RS11275 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS11285 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS11290 PF00005 ABC transporter LLJ08_RS11295 PF00561 alpha/beta hydrolase fold LLJ08_RS11300 PF00120 Glutamine synthetase, catalytic domain LLJ08_RS11310 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS11310 PF08361 MAATS-type transcriptional repressor, C-terminal region LLJ08_RS11325 PF01027 Inhibitor of apoptosis-promoting Bax1 LLJ08_RS11330 PF02635 DsrE/DsrF-like family LLJ08_RS11335 PF02635 DsrE/DsrF-like family LLJ08_RS11345 PF04358 DsrC like protein LLJ08_RS11350 PF02885 Glycosyl transferase family, helical bundle domain LLJ08_RS11350 PF00591 Glycosyl transferase family, a/b domain LLJ08_RS11355 PF13409 Glutathione S-transferase, N-terminal domain LLJ08_RS11360 PF00072 Response regulator receiver domain LLJ08_RS11360 PF09456 RcsC Alpha-Beta-Loop (ABL) LLJ08_RS11360 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS11360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS11375 PF00675 Insulinase (Peptidase family M16) LLJ08_RS11375 PF05193 Peptidase M16 inactive domain LLJ08_RS11380 PF13411 MerR HTH family regulatory protein LLJ08_RS11395 PF01227 GTP cyclohydrolase I LLJ08_RS11400 PF02152 Dihydroneopterin aldolase LLJ08_RS11420 PF13426 PAS domain LLJ08_RS11420 PF01740 STAS domain LLJ08_RS11425 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS11425 PF00563 EAL domain LLJ08_RS11425 PF13426 PAS domain LLJ08_RS11430 PF00762 Ferrochelatase LLJ08_RS11435 PF08338 Domain of unknown function (DUF1731) LLJ08_RS11435 PF01370 NAD dependent epimerase/dehydratase family LLJ08_RS11440 PF08349 Protein of unknown function (DUF1722) LLJ08_RS11445 PF13411 MerR HTH family regulatory protein LLJ08_RS11450 PF03441 FAD binding domain of DNA photolyase LLJ08_RS11450 PF00875 DNA photolyase LLJ08_RS11460 PF00106 short chain dehydrogenase LLJ08_RS11480 PF12729 Four helix bundle sensory module for signal transduction LLJ08_RS11480 PF00672 HAMP domain LLJ08_RS11480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS11485 PF04055 Radical SAM superfamily LLJ08_RS11485 PF06969 HemN C-terminal domain LLJ08_RS11490 PF02146 Sir2 family LLJ08_RS11495 PF04324 BFD-like [2Fe-2S] binding domain LLJ08_RS11495 PF18267 Rubredoxin NAD+ reductase C-terminal domain LLJ08_RS11495 PF13806 Rieske-like [2Fe-2S] domain LLJ08_RS11495 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS11495 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LLJ08_RS11495 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LLJ08_RS11500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LLJ08_RS11500 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS11500 PF13806 Rieske-like [2Fe-2S] domain LLJ08_RS11500 PF18267 Rubredoxin NAD+ reductase C-terminal domain LLJ08_RS11500 PF04324 BFD-like [2Fe-2S] binding domain LLJ08_RS11500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LLJ08_RS11510 PF00069 Protein kinase domain LLJ08_RS11515 PF13361 UvrD-like helicase C-terminal domain LLJ08_RS11515 PF00580 UvrD/REP helicase N-terminal domain LLJ08_RS11515 PF12462 DNA helicase IV / RNA helicase N terminal LLJ08_RS11520 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS11520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS11520 PF08448 PAS fold LLJ08_RS11520 PF13188 PAS domain LLJ08_RS11520 PF00072 Response regulator receiver domain LLJ08_RS11525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS11525 PF00672 HAMP domain LLJ08_RS11545 PF02472 Biopolymer transport protein ExbD/TolR LLJ08_RS11550 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS11555 PF02333 Phytase LLJ08_RS11565 PF00563 EAL domain LLJ08_RS11565 PF13426 PAS domain LLJ08_RS11565 PF08448 PAS fold LLJ08_RS11565 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS11565 PF05231 MASE1 LLJ08_RS11565 PF08447 PAS fold LLJ08_RS11570 PF12833 Helix-turn-helix domain LLJ08_RS11570 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LLJ08_RS11575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS11575 PF03466 LysR substrate binding domain LLJ08_RS11580 PF02634 FdhD/NarQ family LLJ08_RS11585 PF00384 Molybdopterin oxidoreductase LLJ08_RS11585 PF01568 Molydopterin dinucleotide binding domain LLJ08_RS11600 PF02386 Cation transport protein LLJ08_RS11605 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS11605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS11605 PF00072 Response regulator receiver domain LLJ08_RS11605 PF08448 PAS fold LLJ08_RS11605 PF13188 PAS domain LLJ08_RS11610 PF03741 Integral membrane protein TerC family LLJ08_RS11610 PF03471 Transporter associated domain LLJ08_RS11615 PF08239 Bacterial SH3 domain LLJ08_RS11630 PF00343 Carbohydrate phosphorylase LLJ08_RS11630 PF11897 Protein of unknown function (DUF3417) LLJ08_RS11635 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS11635 PF00072 Response regulator receiver domain LLJ08_RS11640 PF02702 Osmosensitive K+ channel His kinase sensor domain LLJ08_RS11640 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS11640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS11640 PF13492 GAF domain LLJ08_RS11640 PF13493 Domain of unknown function (DUF4118) LLJ08_RS11645 PF02669 K+-transporting ATPase, c chain LLJ08_RS11655 PF03814 Potassium-transporting ATPase A subunit LLJ08_RS11675 PF00171 Aldehyde dehydrogenase family LLJ08_RS11680 PF00378 Enoyl-CoA hydratase/isomerase LLJ08_RS11685 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LLJ08_RS11685 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LLJ08_RS11690 PF00378 Enoyl-CoA hydratase/isomerase LLJ08_RS11695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS11695 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS11695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS11705 PF02515 CoA-transferase family III LLJ08_RS11710 PF00501 AMP-binding enzyme LLJ08_RS11710 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS11715 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS11715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS11715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS11720 PF00108 Thiolase, N-terminal domain LLJ08_RS11720 PF02803 Thiolase, C-terminal domain LLJ08_RS11725 PF00106 short chain dehydrogenase LLJ08_RS11735 PF09335 SNARE associated Golgi protein LLJ08_RS11755 PF01292 Prokaryotic cytochrome b561 LLJ08_RS11770 PF11992 Domain of unknown function (DUF3488) LLJ08_RS11770 PF13559 Domain of unknown function (DUF4129) LLJ08_RS11770 PF01841 Transglutaminase-like superfamily LLJ08_RS11780 PF17863 AAA lid domain LLJ08_RS11780 PF07726 ATPase family associated with various cellular activities (AAA) LLJ08_RS11795 PF02769 AIR synthase related protein, C-terminal domain LLJ08_RS11795 PF00586 AIR synthase related protein, N-terminal domain LLJ08_RS11800 PF01734 Patatin-like phospholipase LLJ08_RS11805 PF01594 AI-2E family transporter LLJ08_RS11825 PF03061 Thioesterase superfamily LLJ08_RS11840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LLJ08_RS11840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LLJ08_RS11845 PF07977 FabA-like domain LLJ08_RS11850 PF00109 Beta-ketoacyl synthase, N-terminal domain LLJ08_RS11850 PF02801 Beta-ketoacyl synthase, C-terminal domain LLJ08_RS11855 PF00375 Sodium:dicarboxylate symporter family LLJ08_RS11860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS11860 PF00672 HAMP domain LLJ08_RS11860 PF12729 Four helix bundle sensory module for signal transduction LLJ08_RS11865 PF00672 HAMP domain LLJ08_RS11865 PF12729 Four helix bundle sensory module for signal transduction LLJ08_RS11865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS11885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS11885 PF00183 Hsp90 protein LLJ08_RS11910 PF05525 Branched-chain amino acid transport protein LLJ08_RS11915 PF00549 CoA-ligase LLJ08_RS11915 PF02629 CoA binding domain LLJ08_RS11920 PF08442 ATP-grasp domain LLJ08_RS11920 PF00549 CoA-ligase LLJ08_RS11925 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS11925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LLJ08_RS11930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LLJ08_RS11930 PF00364 Biotin-requiring enzyme LLJ08_RS11930 PF02817 e3 binding domain LLJ08_RS11935 PF02779 Transketolase, pyrimidine binding domain LLJ08_RS11935 PF16870 2-oxoglutarate dehydrogenase C-terminal LLJ08_RS11935 PF00676 Dehydrogenase E1 component LLJ08_RS11935 PF16078 2-oxoglutarate dehydrogenase N-terminus LLJ08_RS11940 PF13085 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS11945 PF02910 Fumarate reductase flavoprotein C-term LLJ08_RS11945 PF00890 FAD binding domain LLJ08_RS11950 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LLJ08_RS11955 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LLJ08_RS11960 PF00285 Citrate synthase, C-terminal domain LLJ08_RS11965 PF03692 Putative zinc- or iron-chelating domain LLJ08_RS11975 PF06865 Pyrimidine/purine nucleoside phosphorylase LLJ08_RS11985 PF02561 Flagellar protein FliS LLJ08_RS11990 PF02465 Flagellar hook-associated protein 2 N-terminus LLJ08_RS11990 PF07195 Flagellar hook-associated protein 2 C-terminus LLJ08_RS11990 PF07196 Flagellin hook IN motif LLJ08_RS12000 PF00669 Bacterial flagellin N-terminal helical region LLJ08_RS12000 PF07196 Flagellin hook IN motif LLJ08_RS12000 PF00700 Bacterial flagellin C-terminal helical region LLJ08_RS12015 PF03120 NAD-dependent DNA ligase OB-fold domain LLJ08_RS12015 PF00533 BRCA1 C Terminus (BRCT) domain LLJ08_RS12015 PF12826 Helix-hairpin-helix motif LLJ08_RS12015 PF01653 NAD-dependent DNA ligase adenylation domain LLJ08_RS12015 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LLJ08_RS12020 PF04354 ZipA, C-terminal FtsZ-binding domain LLJ08_RS12025 PF02463 RecF/RecN/SMC N terminal domain LLJ08_RS12030 PF06463 Molybdenum Cofactor Synthesis C LLJ08_RS12030 PF04055 Radical SAM superfamily LLJ08_RS12035 PF00027 Cyclic nucleotide-binding domain LLJ08_RS12035 PF00520 Ion transport protein LLJ08_RS12050 PF00034 Cytochrome c LLJ08_RS12050 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LLJ08_RS12050 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LLJ08_RS12055 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLJ08_RS12070 PF01206 Sulfurtransferase TusA LLJ08_RS12075 PF01728 FtsJ-like methyltransferase LLJ08_RS12075 PF18125 RlmM ferredoxin-like domain LLJ08_RS12080 PF00330 Aconitase family (aconitate hydratase) LLJ08_RS12080 PF00694 Aconitase C-terminal domain LLJ08_RS12085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS12085 PF08447 PAS fold LLJ08_RS12095 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLJ08_RS12105 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS12105 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LLJ08_RS12110 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLJ08_RS12125 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LLJ08_RS12125 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS12130 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LLJ08_RS12130 PF12801 4Fe-4S binding domain LLJ08_RS12130 PF13746 4Fe-4S dicluster domain LLJ08_RS12140 PF00403 Heavy-metal-associated domain LLJ08_RS12155 PF02540 NAD synthase LLJ08_RS12160 PF04055 Radical SAM superfamily LLJ08_RS12160 PF06969 HemN C-terminal domain LLJ08_RS12165 PF00325 Bacterial regulatory proteins, crp family LLJ08_RS12165 PF00027 Cyclic nucleotide-binding domain LLJ08_RS12170 PF00156 Phosphoribosyl transferase domain LLJ08_RS12175 PF02630 SCO1/SenC LLJ08_RS12185 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS12190 PF00005 ABC transporter LLJ08_RS12200 PF02132 RecR protein LLJ08_RS12200 PF13662 Toprim domain LLJ08_RS12205 PF02575 YbaB/EbfC DNA-binding family LLJ08_RS12210 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LLJ08_RS12210 PF12170 DNA polymerase III tau subunit V interacting with alpha LLJ08_RS12210 PF12169 DNA polymerase III subunits gamma and tau domain III LLJ08_RS12215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLJ08_RS12215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLJ08_RS12215 PF11890 Domain of unknown function (DUF3410) LLJ08_RS12220 PF01554 MatE LLJ08_RS12230 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS12245 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS12245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLJ08_RS12255 PF12833 Helix-turn-helix domain LLJ08_RS12255 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LLJ08_RS12265 PF02322 Cytochrome bd terminal oxidase subunit II LLJ08_RS12270 PF01654 Cytochrome bd terminal oxidase subunit I LLJ08_RS12275 PF01447 Thermolysin metallopeptidase, catalytic domain LLJ08_RS12275 PF02868 Thermolysin metallopeptidase, alpha-helical domain LLJ08_RS12275 PF16485 Protealysin propeptide LLJ08_RS12285 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS12285 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS12285 PF00563 EAL domain LLJ08_RS12295 PF03358 NADPH-dependent FMN reductase LLJ08_RS12300 PF03466 LysR substrate binding domain LLJ08_RS12300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS12305 PF01212 Beta-eliminating lyase LLJ08_RS12330 PF03958 Bacterial type II/III secretion system short domain LLJ08_RS12330 PF00263 Bacterial type II and III secretion system protein LLJ08_RS12335 PF01053 Cys/Met metabolism PLP-dependent enzyme LLJ08_RS12340 PF00156 Phosphoribosyl transferase domain LLJ08_RS12345 PF02674 Colicin V production protein LLJ08_RS12355 PF08245 Mur ligase middle domain LLJ08_RS12355 PF02875 Mur ligase family, glutamate ligase domain LLJ08_RS12360 PF17848 Acetyl-coA carboxylase zinc finger domain LLJ08_RS12360 PF01039 Carboxyl transferase domain LLJ08_RS12365 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LLJ08_RS12370 PF01416 tRNA pseudouridine synthase LLJ08_RS12380 PF01118 Semialdehyde dehydrogenase, NAD binding domain LLJ08_RS12380 PF02774 Semialdehyde dehydrogenase, dimerisation domain LLJ08_RS12385 PF02774 Semialdehyde dehydrogenase, dimerisation domain LLJ08_RS12385 PF01118 Semialdehyde dehydrogenase, NAD binding domain LLJ08_RS12390 PF00180 Isocitrate/isopropylmalate dehydrogenase LLJ08_RS12395 PF00694 Aconitase C-terminal domain LLJ08_RS12400 PF00330 Aconitase family (aconitate hydratase) LLJ08_RS12405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS12410 PF00011 Hsp20/alpha crystallin family LLJ08_RS12420 PF01207 Dihydrouridine synthase (Dus) LLJ08_RS12455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LLJ08_RS12465 PF00535 Glycosyl transferase family 2 LLJ08_RS12470 PF13614 AAA domain LLJ08_RS12470 PF02706 Chain length determinant protein LLJ08_RS12470 PF13807 G-rich domain on putative tyrosine kinase LLJ08_RS12480 PF02357 Transcription termination factor nusG LLJ08_RS12485 PF00534 Glycosyl transferases group 1 LLJ08_RS12485 PF13439 Glycosyltransferase Family 4 LLJ08_RS12500 PF13439 Glycosyltransferase Family 4 LLJ08_RS12500 PF00534 Glycosyl transferases group 1 LLJ08_RS12510 PF00534 Glycosyl transferases group 1 LLJ08_RS12510 PF13439 Glycosyltransferase Family 4 LLJ08_RS12530 PF01757 Acyltransferase family LLJ08_RS12550 PF00437 Type II/IV secretion system protein LLJ08_RS12580 PF04972 BON domain LLJ08_RS12580 PF13629 Pilus formation protein N terminal region LLJ08_RS12580 PF00263 Bacterial type II and III secretion system protein LLJ08_RS12610 PF04055 Radical SAM superfamily LLJ08_RS12610 PF18693 TRAM domain LLJ08_RS12610 PF00919 Uncharacterized protein family UPF0004 LLJ08_RS12615 PF05199 GMC oxidoreductase LLJ08_RS12615 PF00732 GMC oxidoreductase LLJ08_RS12620 PF00171 Aldehyde dehydrogenase family LLJ08_RS12625 PF02028 BCCT, betaine/carnitine/choline family transporter LLJ08_RS12630 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS12635 PF01980 tRNA-methyltransferase O LLJ08_RS12635 PF18389 TrmO C-terminal domain LLJ08_RS12640 PF01804 Penicillin amidase LLJ08_RS12650 PF07516 SecA Wing and Scaffold domain LLJ08_RS12650 PF01043 SecA preprotein cross-linking domain LLJ08_RS12650 PF07517 SecA DEAD-like domain LLJ08_RS12650 PF02810 SEC-C motif LLJ08_RS12660 PF01048 Phosphorylase superfamily LLJ08_RS12665 PF00933 Glycosyl hydrolase family 3 N terminal domain LLJ08_RS12675 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS12680 PF00717 Peptidase S24-like LLJ08_RS12680 PF01726 LexA DNA binding domain LLJ08_RS12685 PF03846 Cell division inhibitor SulA LLJ08_RS12695 PF00892 EamA-like transporter family LLJ08_RS12705 PF01396 Topoisomerase DNA binding C4 zinc finger LLJ08_RS12705 PF01751 Toprim domain LLJ08_RS12705 PF01131 DNA topoisomerase LLJ08_RS12705 PF08272 Topoisomerase I zinc-ribbon-like LLJ08_RS12715 PF02803 Thiolase, C-terminal domain LLJ08_RS12715 PF00108 Thiolase, N-terminal domain LLJ08_RS12720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLJ08_RS12720 PF00378 Enoyl-CoA hydratase/isomerase LLJ08_RS12720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLJ08_RS12725 PF00326 Prolyl oligopeptidase family LLJ08_RS12725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LLJ08_RS12735 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS12735 PF00501 AMP-binding enzyme LLJ08_RS12735 PF16177 Acetyl-coenzyme A synthetase N-terminus LLJ08_RS12740 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS12745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS12745 PF03466 LysR substrate binding domain LLJ08_RS12750 PF02515 CoA-transferase family III LLJ08_RS12755 PF00682 HMGL-like LLJ08_RS12760 PF07007 Lysozyme inhibitor LprI LLJ08_RS12770 PF00561 alpha/beta hydrolase fold LLJ08_RS12775 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS12780 PF03328 HpcH/HpaI aldolase/citrate lyase family LLJ08_RS12785 PF02515 CoA-transferase family III LLJ08_RS12790 PF03972 MmgE/PrpD family LLJ08_RS12795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLJ08_RS12800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS12800 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS12800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS12810 PF03466 LysR substrate binding domain LLJ08_RS12810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS12815 PF10011 Predicted membrane protein (DUF2254) LLJ08_RS12825 PF00472 RF-1 domain LLJ08_RS12835 PF16591 Helical bimodular sensor domain LLJ08_RS12835 PF00672 HAMP domain LLJ08_RS12835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS12840 PF00664 ABC transporter transmembrane region LLJ08_RS12840 PF00005 ABC transporter LLJ08_RS12850 PF00581 Rhodanese-like domain LLJ08_RS12850 PF17773 UPF0176 acylphosphatase like domain LLJ08_RS12855 PF01722 BolA-like protein LLJ08_RS12865 PF00206 Lyase LLJ08_RS12865 PF10415 Fumarase C C-terminus LLJ08_RS12895 PF03573 outer membrane porin, OprD family LLJ08_RS12900 PF03594 Benzoate membrane transport protein LLJ08_RS12905 PF00775 Dioxygenase LLJ08_RS12905 PF04444 Catechol dioxygenase N terminus LLJ08_RS12910 PF02426 Muconolactone delta-isomerase LLJ08_RS12915 PF13378 Enolase C-terminal domain-like LLJ08_RS12915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LLJ08_RS12920 PF07690 Major Facilitator Superfamily LLJ08_RS12925 PF00106 short chain dehydrogenase LLJ08_RS12930 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS12930 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS12930 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS12935 PF00866 Ring hydroxylating beta subunit LLJ08_RS12940 PF00355 Rieske [2Fe-2S] domain LLJ08_RS12940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LLJ08_RS12945 PF12833 Helix-turn-helix domain LLJ08_RS12945 PF14525 AraC-binding-like domain LLJ08_RS12950 PF01207 Dihydrouridine synthase (Dus) LLJ08_RS12955 PF00923 Transaldolase/Fructose-6-phosphate aldolase LLJ08_RS12965 PF00072 Response regulator receiver domain LLJ08_RS12975 PF04333 MlaA lipoprotein LLJ08_RS12985 PF14489 QueF-like protein LLJ08_RS12985 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LLJ08_RS12990 PF01061 ABC-2 type transporter LLJ08_RS12995 PF00005 ABC transporter LLJ08_RS13000 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LLJ08_RS13010 PF00202 Aminotransferase class-III LLJ08_RS13020 PF01966 HD domain LLJ08_RS13020 PF11871 Domain of unknown function (DUF3391) LLJ08_RS13040 PF00581 Rhodanese-like domain LLJ08_RS13045 PF00924 Mechanosensitive ion channel LLJ08_RS13050 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS13050 PF09317 Domain of unknown function (DUF1974) LLJ08_RS13050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS13050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS13060 PF04675 DNA ligase N terminus LLJ08_RS13060 PF01068 ATP dependent DNA ligase domain LLJ08_RS13060 PF04679 ATP dependent DNA ligase C terminal region LLJ08_RS13065 PF00270 DEAD/DEAH box helicase LLJ08_RS13065 PF00271 Helicase conserved C-terminal domain LLJ08_RS13065 PF08494 DEAD/H associated LLJ08_RS13080 PF00156 Phosphoribosyl transferase domain LLJ08_RS13080 PF05139 Erythromycin esterase LLJ08_RS13095 PF03819 MazG nucleotide pyrophosphohydrolase domain LLJ08_RS13100 PF04607 Region found in RelA / SpoT proteins LLJ08_RS13100 PF02824 TGS domain LLJ08_RS13100 PF13291 ACT domain LLJ08_RS13105 PF01938 TRAM domain LLJ08_RS13105 PF05958 tRNA (Uracil-5-)-methyltransferase LLJ08_RS13110 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS13115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS13115 PF03466 LysR substrate binding domain LLJ08_RS13120 PF03458 UPF0126 domain LLJ08_RS13125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LLJ08_RS13125 PF00072 Response regulator receiver domain LLJ08_RS13125 PF01627 Hpt domain LLJ08_RS13125 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS13125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS13125 PF00672 HAMP domain LLJ08_RS13130 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LLJ08_RS13130 PF01266 FAD dependent oxidoreductase LLJ08_RS13140 PF01925 Sulfite exporter TauE/SafE LLJ08_RS13150 PF03466 LysR substrate binding domain LLJ08_RS13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS13165 PF00271 Helicase conserved C-terminal domain LLJ08_RS13165 PF00270 DEAD/DEAH box helicase LLJ08_RS13185 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LLJ08_RS13200 PF07396 Phosphate-selective porin O and P LLJ08_RS13205 PF00899 ThiF family LLJ08_RS13210 PF07687 Peptidase dimerisation domain LLJ08_RS13210 PF01546 Peptidase family M20/M25/M40 LLJ08_RS13215 PF13847 Methyltransferase domain LLJ08_RS13225 PF00313 'Cold-shock' DNA-binding domain LLJ08_RS13240 PF00005 ABC transporter LLJ08_RS13255 PF00905 Penicillin binding protein transpeptidase domain LLJ08_RS13270 PF00141 Peroxidase LLJ08_RS13275 PF01553 Acyltransferase LLJ08_RS13290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS13290 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS13290 PF00672 HAMP domain LLJ08_RS13295 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS13295 PF00072 Response regulator receiver domain LLJ08_RS13300 PF03477 ATP cone domain LLJ08_RS13300 PF00317 Ribonucleotide reductase, all-alpha domain LLJ08_RS13300 PF02867 Ribonucleotide reductase, barrel domain LLJ08_RS13305 PF00268 Ribonucleotide reductase, small chain LLJ08_RS13340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS13340 PF03466 LysR substrate binding domain LLJ08_RS13345 PF02525 Flavodoxin-like fold LLJ08_RS13350 PF04993 TfoX N-terminal domain LLJ08_RS13360 PF01047 MarR family LLJ08_RS13365 PF07690 Major Facilitator Superfamily LLJ08_RS13375 PF13649 Methyltransferase domain LLJ08_RS13395 PF08447 PAS fold LLJ08_RS13395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS13395 PF13426 PAS domain LLJ08_RS13405 PF02525 Flavodoxin-like fold LLJ08_RS13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS13410 PF03466 LysR substrate binding domain LLJ08_RS13415 PF01638 HxlR-like helix-turn-helix LLJ08_RS13445 PF13411 MerR HTH family regulatory protein LLJ08_RS13470 PF10091 Putative glucoamylase LLJ08_RS13470 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LLJ08_RS13470 PF06165 Glycosyltransferase family 36 LLJ08_RS13475 PF11008 Protein of unknown function (DUF2846) LLJ08_RS13480 PF12392 Collagenase LLJ08_RS13480 PF01136 Peptidase family U32 LLJ08_RS13490 PF07690 Major Facilitator Superfamily LLJ08_RS13510 PF07885 Ion channel LLJ08_RS13520 PF00270 DEAD/DEAH box helicase LLJ08_RS13520 PF00271 Helicase conserved C-terminal domain LLJ08_RS13520 PF03880 DbpA RNA binding domain LLJ08_RS13530 PF00230 Major intrinsic protein LLJ08_RS13535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LLJ08_RS13535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LLJ08_RS13540 PF00455 DeoR C terminal sensor domain LLJ08_RS13540 PF08220 DeoR-like helix-turn-helix domain LLJ08_RS13545 PF01266 FAD dependent oxidoreductase LLJ08_RS13545 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LLJ08_RS13560 PF05698 Bacterial trigger factor protein (TF) C-terminus LLJ08_RS13565 PF00672 HAMP domain LLJ08_RS13565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS13590 PF00459 Inositol monophosphatase family LLJ08_RS13610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLJ08_RS13615 PF00909 Ammonium Transporter Family LLJ08_RS13620 PF01966 HD domain LLJ08_RS13620 PF13286 Phosphohydrolase-associated domain LLJ08_RS13630 PF03475 3-alpha domain LLJ08_RS13630 PF03473 MOSC domain LLJ08_RS13640 PF00892 EamA-like transporter family LLJ08_RS13645 PF01709 Transcriptional regulator LLJ08_RS13650 PF01844 HNH endonuclease LLJ08_RS13655 PF00582 Universal stress protein family LLJ08_RS13665 PF01725 Ham1 family LLJ08_RS13680 PF00474 Sodium:solute symporter family LLJ08_RS13685 PF00293 NUDIX domain LLJ08_RS13695 PF00140 Sigma-70 factor, region 1.2 LLJ08_RS13695 PF04542 Sigma-70 region 2 LLJ08_RS13695 PF04545 Sigma-70, region 4 LLJ08_RS13695 PF04539 Sigma-70 region 3 LLJ08_RS13700 PF01551 Peptidase family M23 LLJ08_RS13700 PF01476 LysM domain LLJ08_RS13715 PF01975 Survival protein SurE LLJ08_RS13720 PF01142 tRNA pseudouridine synthase D (TruD) LLJ08_RS13725 PF02542 YgbB family LLJ08_RS13735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLJ08_RS13740 PF00756 Putative esterase LLJ08_RS13745 PF00107 Zinc-binding dehydrogenase LLJ08_RS13745 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS13750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS13750 PF03466 LysR substrate binding domain LLJ08_RS13765 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LLJ08_RS13770 PF04977 Septum formation initiator LLJ08_RS13775 PF00113 Enolase, C-terminal TIM barrel domain LLJ08_RS13775 PF03952 Enolase, N-terminal domain LLJ08_RS13780 PF00793 DAHP synthetase I family LLJ08_RS13785 PF00117 Glutamine amidotransferase class-I LLJ08_RS13785 PF06418 CTP synthase N-terminus LLJ08_RS13790 PF11734 TilS substrate C-terminal domain LLJ08_RS13790 PF01171 PP-loop family LLJ08_RS13790 PF09179 TilS substrate binding domain LLJ08_RS13795 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LLJ08_RS13800 PF02811 PHP domain LLJ08_RS13800 PF01336 OB-fold nucleic acid binding domain LLJ08_RS13800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LLJ08_RS13800 PF07733 Bacterial DNA polymerase III alpha NTPase domain LLJ08_RS13800 PF14579 Helix-hairpin-helix motif LLJ08_RS13805 PF01351 Ribonuclease HII LLJ08_RS13810 PF02684 Lipid-A-disaccharide synthetase LLJ08_RS13815 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LLJ08_RS13815 PF00132 Bacterial transferase hexapeptide (six repeats) LLJ08_RS13820 PF07977 FabA-like domain LLJ08_RS13825 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LLJ08_RS13825 PF00132 Bacterial transferase hexapeptide (six repeats) LLJ08_RS13830 PF03938 Outer membrane protein (OmpH-like) LLJ08_RS13835 PF01103 Surface antigen LLJ08_RS13835 PF07244 Surface antigen variable number repeat LLJ08_RS13840 PF02163 Peptidase family M50 LLJ08_RS13840 PF13180 PDZ domain LLJ08_RS13840 PF17820 PDZ domain LLJ08_RS13845 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LLJ08_RS13845 PF13288 DXP reductoisomerase C-terminal domain LLJ08_RS13845 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LLJ08_RS13855 PF01255 Putative undecaprenyl diphosphate synthase LLJ08_RS13860 PF01765 Ribosome recycling factor LLJ08_RS13865 PF00696 Amino acid kinase family LLJ08_RS13870 PF00889 Elongation factor TS LLJ08_RS13875 PF00318 Ribosomal protein S2 LLJ08_RS13880 PF00557 Metallopeptidase family M24 LLJ08_RS13885 PF01842 ACT domain LLJ08_RS13885 PF08335 GlnD PII-uridylyltransferase LLJ08_RS13885 PF01966 HD domain LLJ08_RS13885 PF01909 Nucleotidyltransferase domain LLJ08_RS13890 PF03334 Na+/H+ antiporter subunit LLJ08_RS13895 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LLJ08_RS13900 PF01899 Na+/H+ ion antiporter subunit LLJ08_RS13905 PF00361 Proton-conducting membrane transporter LLJ08_RS13910 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LLJ08_RS13915 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LLJ08_RS13915 PF13244 Domain of unknown function (DUF4040) LLJ08_RS13915 PF00361 Proton-conducting membrane transporter LLJ08_RS13915 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LLJ08_RS13920 PF05433 Glycine zipper 2TM domain LLJ08_RS13930 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LLJ08_RS13930 PF01243 Pyridoxamine 5'-phosphate oxidase LLJ08_RS13935 PF04972 BON domain LLJ08_RS13935 PF00691 OmpA family LLJ08_RS13940 PF00144 Beta-lactamase LLJ08_RS13945 PF06733 DEAD_2 LLJ08_RS13945 PF13307 Helicase C-terminal domain LLJ08_RS13965 PF02810 SEC-C motif LLJ08_RS13970 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS13970 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS13975 PF03466 LysR substrate binding domain LLJ08_RS13980 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS13980 PF00072 Response regulator receiver domain LLJ08_RS13985 PF00892 EamA-like transporter family LLJ08_RS13990 PF03942 DTW domain LLJ08_RS14000 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase LLJ08_RS14000 PF09364 XFP N-terminal domain LLJ08_RS14000 PF09363 XFP C-terminal domain LLJ08_RS14005 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS14005 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LLJ08_RS14005 PF10996 Beta-Casp domain LLJ08_RS14015 PF02631 RecX family LLJ08_RS14020 PF00154 recA bacterial DNA recombination protein LLJ08_RS14025 PF02464 Competence-damaged protein LLJ08_RS14035 PF00488 MutS domain V LLJ08_RS14035 PF05190 MutS family domain IV LLJ08_RS14035 PF05192 MutS domain III LLJ08_RS14035 PF05188 MutS domain II LLJ08_RS14035 PF01624 MutS domain I LLJ08_RS14040 PF11953 Domain of unknown function (DUF3470) LLJ08_RS14040 PF00037 4Fe-4S binding domain LLJ08_RS14060 PF13439 Glycosyltransferase Family 4 LLJ08_RS14060 PF00534 Glycosyl transferases group 1 LLJ08_RS14065 PF03631 Virulence factor BrkB LLJ08_RS14070 PF10431 C-terminal, D2-small domain, of ClpB protein LLJ08_RS14070 PF07724 AAA domain (Cdc48 subfamily) LLJ08_RS14075 PF00795 Carbon-nitrogen hydrolase LLJ08_RS14080 PF09723 Zinc ribbon domain LLJ08_RS14085 PF03069 Acetamidase/Formamidase family LLJ08_RS14090 PF00005 ABC transporter LLJ08_RS14095 PF08402 TOBE domain LLJ08_RS14095 PF00005 ABC transporter LLJ08_RS14105 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS14105 PF11862 Domain of unknown function (DUF3382) LLJ08_RS14115 PF00072 Response regulator receiver domain LLJ08_RS14115 PF18415 Histidine kinase receptor ArcB trans-membrane domain LLJ08_RS14115 PF01627 Hpt domain LLJ08_RS14115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS14115 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS14115 PF00989 PAS fold LLJ08_RS14120 PF00072 Response regulator receiver domain LLJ08_RS14130 PF03062 MBOAT, membrane-bound O-acyltransferase family LLJ08_RS14140 PF00550 Phosphopantetheine attachment site LLJ08_RS14155 PF01590 GAF domain LLJ08_RS14155 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS14155 PF00158 Sigma-54 interaction domain LLJ08_RS14165 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS14165 PF00072 Response regulator receiver domain LLJ08_RS14170 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS14170 PF00593 TonB dependent receptor LLJ08_RS14175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS14175 PF00672 HAMP domain LLJ08_RS14200 PF00150 Cellulase (glycosyl hydrolase family 5) LLJ08_RS14215 PF13509 S1 domain LLJ08_RS14215 PF17783 CvfB-like winged helix domain LLJ08_RS14220 PF01011 PQQ enzyme repeat LLJ08_RS14225 PF07995 Glucose / Sorbosone dehydrogenase LLJ08_RS14235 PF00849 RNA pseudouridylate synthase LLJ08_RS14235 PF01479 S4 domain LLJ08_RS14260 PF00270 DEAD/DEAH box helicase LLJ08_RS14260 PF00271 Helicase conserved C-terminal domain LLJ08_RS14260 PF08494 DEAD/H associated LLJ08_RS14270 PF00106 short chain dehydrogenase LLJ08_RS14280 PF03781 Sulfatase-modifying factor enzyme 1 LLJ08_RS14280 PF12867 DinB superfamily LLJ08_RS14290 PF01483 Proprotein convertase P-domain LLJ08_RS14290 PF00082 Subtilase family LLJ08_RS14300 PF00733 Asparagine synthase LLJ08_RS14300 PF13537 Glutamine amidotransferase domain LLJ08_RS14305 PF08443 RimK-like ATP-grasp domain LLJ08_RS14305 PF08245 Mur ligase middle domain LLJ08_RS14305 PF02875 Mur ligase family, glutamate ligase domain LLJ08_RS14310 PF05343 M42 glutamyl aminopeptidase LLJ08_RS14315 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS14315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS14315 PF01627 Hpt domain LLJ08_RS14315 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LLJ08_RS14315 PF00072 Response regulator receiver domain LLJ08_RS14315 PF00672 HAMP domain LLJ08_RS14320 PF06794 Uncharacterised protein family (UPF0270) LLJ08_RS14335 PF00561 alpha/beta hydrolase fold LLJ08_RS14335 PF00106 short chain dehydrogenase LLJ08_RS14340 PF00474 Sodium:solute symporter family LLJ08_RS14345 PF04341 Protein of unknown function, DUF485 LLJ08_RS14360 PF04333 MlaA lipoprotein LLJ08_RS14365 PF02678 Pirin LLJ08_RS14365 PF05726 Pirin C-terminal cupin domain LLJ08_RS14370 PF03279 Bacterial lipid A biosynthesis acyltransferase LLJ08_RS14375 PF03775 Septum formation inhibitor MinC, C-terminal domain LLJ08_RS14375 PF05209 Septum formation inhibitor MinC, N-terminal domain LLJ08_RS14380 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LLJ08_RS14385 PF03776 Septum formation topological specificity factor MinE LLJ08_RS14390 PF00849 RNA pseudouridylate synthase LLJ08_RS14395 PF02127 Aminopeptidase I zinc metalloprotease (M18) LLJ08_RS14400 PF09277 Erythronolide synthase, docking LLJ08_RS14400 PF00550 Phosphopantetheine attachment site LLJ08_RS14400 PF00698 Acyl transferase domain LLJ08_RS14400 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS14400 PF08990 Erythronolide synthase docking LLJ08_RS14400 PF16197 Ketoacyl-synthetase C-terminal extension LLJ08_RS14400 PF00109 Beta-ketoacyl synthase, N-terminal domain LLJ08_RS14400 PF02801 Beta-ketoacyl synthase, C-terminal domain LLJ08_RS14400 PF08659 KR domain LLJ08_RS14400 PF14765 Polyketide synthase dehydratase LLJ08_RS14405 PF11818 C-terminal domain of tail specific protease (DUF3340) LLJ08_RS14405 PF00595 PDZ domain LLJ08_RS14405 PF03572 Peptidase family S41 LLJ08_RS14405 PF17804 Tail specific protease N-terminal domain LLJ08_RS14410 PF00563 EAL domain LLJ08_RS14410 PF05231 MASE1 LLJ08_RS14440 PF00460 Flagella basal body rod protein LLJ08_RS14440 PF00700 Bacterial flagellin C-terminal helical region LLJ08_RS14440 PF00669 Bacterial flagellin N-terminal helical region LLJ08_RS14445 PF00460 Flagella basal body rod protein LLJ08_RS14445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS14450 PF10135 Rod binding protein LLJ08_RS14450 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LLJ08_RS14455 PF02119 Flagellar P-ring protein LLJ08_RS14460 PF02107 Flagellar L-ring protein LLJ08_RS14465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS14465 PF00460 Flagella basal body rod protein LLJ08_RS14470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS14470 PF00460 Flagella basal body rod protein LLJ08_RS14475 PF00460 Flagella basal body rod protein LLJ08_RS14475 PF07559 Flagellar basal body protein FlaE LLJ08_RS14475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS14480 PF13861 FlgD Tudor-like domain LLJ08_RS14480 PF03963 Flagellar hook capping protein - N-terminal region LLJ08_RS14480 PF13860 FlgD Ig-like domain LLJ08_RS14485 PF00460 Flagella basal body rod protein LLJ08_RS14485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS14490 PF00460 Flagella basal body rod protein LLJ08_RS14495 PF01739 CheR methyltransferase, SAM binding domain LLJ08_RS14495 PF03705 CheR methyltransferase, all-alpha domain LLJ08_RS14500 PF01584 CheW-like domain LLJ08_RS14500 PF00072 Response regulator receiver domain LLJ08_RS14520 PF07317 Flagellar regulator YcgR LLJ08_RS14520 PF07238 PilZ domain LLJ08_RS14540 PF03869 Arc-like DNA binding domain LLJ08_RS14545 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LLJ08_RS14550 PF00364 Biotin-requiring enzyme LLJ08_RS14550 PF00682 HMGL-like LLJ08_RS14550 PF02436 Conserved carboxylase domain LLJ08_RS14555 PF04277 Oxaloacetate decarboxylase, gamma chain LLJ08_RS14560 PF01769 Divalent cation transporter LLJ08_RS14560 PF00571 CBS domain LLJ08_RS14560 PF03448 MgtE intracellular N domain LLJ08_RS14585 PF02599 Global regulator protein family LLJ08_RS14590 PF00696 Amino acid kinase family LLJ08_RS14590 PF01842 ACT domain LLJ08_RS14590 PF13840 ACT domain LLJ08_RS14595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LLJ08_RS14595 PF02272 DHHA1 domain LLJ08_RS14595 PF01411 tRNA synthetases class II (A) LLJ08_RS14600 PF01212 Beta-eliminating lyase LLJ08_RS14610 PF03692 Putative zinc- or iron-chelating domain LLJ08_RS14620 PF05166 YcgL domain LLJ08_RS14625 PF01612 3'-5' exonuclease LLJ08_RS14625 PF00570 HRDC domain LLJ08_RS14630 PF00581 Rhodanese-like domain LLJ08_RS14635 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LLJ08_RS14640 PF00255 Glutathione peroxidase LLJ08_RS14650 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS14655 PF03459 TOBE domain LLJ08_RS14655 PF00005 ABC transporter LLJ08_RS14660 PF01042 Endoribonuclease L-PSP LLJ08_RS14665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS14665 PF03466 LysR substrate binding domain LLJ08_RS14670 PF02654 Cobalamin-5-phosphate synthase LLJ08_RS14675 PF00300 Histidine phosphatase superfamily (branch 1) LLJ08_RS14680 PF02277 Phosphoribosyltransferase LLJ08_RS14685 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LLJ08_RS14690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LLJ08_RS14690 PF07685 CobB/CobQ-like glutamine amidotransferase domain LLJ08_RS14695 PF00155 Aminotransferase class I and II LLJ08_RS14700 PF17113 Regulatory signalling modulator protein AmpE LLJ08_RS14700 PF03186 CobD/Cbib protein LLJ08_RS14710 PF00881 Nitroreductase family LLJ08_RS14715 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LLJ08_RS14715 PF07685 CobB/CobQ-like glutamine amidotransferase domain LLJ08_RS14720 PF12557 Cob(I)alamin adenosyltransferase N terminal LLJ08_RS14720 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LLJ08_RS14730 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS14730 PF00593 TonB dependent receptor LLJ08_RS14745 PF00877 NlpC/P60 family LLJ08_RS14750 PF00877 NlpC/P60 family LLJ08_RS14755 PF02146 Sir2 family LLJ08_RS14765 PF08173 Membrane bound YbgT-like protein LLJ08_RS14770 PF02322 Cytochrome bd terminal oxidase subunit II LLJ08_RS14775 PF01654 Cytochrome bd terminal oxidase subunit I LLJ08_RS14800 PF00793 DAHP synthetase I family LLJ08_RS14805 PF01171 PP-loop family LLJ08_RS14815 PF04893 Yip1 domain LLJ08_RS14825 PF10263 SprT-like family LLJ08_RS14825 PF17283 SprT-like zinc ribbon domain LLJ08_RS14830 PF07690 Major Facilitator Superfamily LLJ08_RS14835 PF06796 Periplasmic nitrate reductase protein NapE LLJ08_RS14845 PF01568 Molydopterin dinucleotide binding domain LLJ08_RS14845 PF00384 Molybdopterin oxidoreductase LLJ08_RS14845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LLJ08_RS14850 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LLJ08_RS14855 PF03264 NapC/NirT cytochrome c family, N-terminal region LLJ08_RS14860 PF00692 dUTPase LLJ08_RS14865 PF00313 'Cold-shock' DNA-binding domain LLJ08_RS14870 PF10609 NUBPL iron-transfer P-loop NTPase LLJ08_RS14875 PF09334 tRNA synthetases class I (M) LLJ08_RS14875 PF01588 Putative tRNA binding domain LLJ08_RS14885 PF01479 S4 domain LLJ08_RS14885 PF00849 RNA pseudouridylate synthase LLJ08_RS14895 PF12146 Serine aminopeptidase, S33 LLJ08_RS14900 PF00108 Thiolase, N-terminal domain LLJ08_RS14900 PF02803 Thiolase, C-terminal domain LLJ08_RS14905 PF01144 Coenzyme A transferase LLJ08_RS14910 PF01144 Coenzyme A transferase LLJ08_RS14915 PF09339 IclR helix-turn-helix domain LLJ08_RS14915 PF01614 Bacterial transcriptional regulator LLJ08_RS14935 PF00474 Sodium:solute symporter family LLJ08_RS14940 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS14940 PF00593 TonB dependent receptor LLJ08_RS14950 PF00474 Sodium:solute symporter family LLJ08_RS14955 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LLJ08_RS14955 PF00171 Aldehyde dehydrogenase family LLJ08_RS14955 PF01619 Proline dehydrogenase LLJ08_RS14955 PF14850 DNA-binding domain of Proline dehydrogenase LLJ08_RS14960 PF12833 Helix-turn-helix domain LLJ08_RS14965 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS14965 PF05362 Lon protease (S16) C-terminal proteolytic domain LLJ08_RS14965 PF02190 ATP-dependent protease La (LON) substrate-binding domain LLJ08_RS14975 PF13649 Methyltransferase domain LLJ08_RS14980 PF08003 Protein of unknown function (DUF1698) LLJ08_RS14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS14990 PF03466 LysR substrate binding domain LLJ08_RS15000 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LLJ08_RS15005 PF11967 Recombination protein O N terminal LLJ08_RS15005 PF02565 Recombination protein O C terminal LLJ08_RS15010 PF01926 50S ribosome-binding GTPase LLJ08_RS15010 PF07650 KH domain LLJ08_RS15015 PF00035 Double-stranded RNA binding motif LLJ08_RS15015 PF14622 Ribonuclease-III-like LLJ08_RS15025 PF10502 Signal peptidase, peptidase S26 LLJ08_RS15030 PF00679 Elongation factor G C-terminus LLJ08_RS15030 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS15030 PF03144 Elongation factor Tu domain 2 LLJ08_RS15030 PF06421 GTP-binding protein LepA C-terminus LLJ08_RS15035 PF13180 PDZ domain LLJ08_RS15045 PF03888 MucB/RseB N-terminal domain LLJ08_RS15045 PF17188 MucB/RseB C-terminal domain LLJ08_RS15050 PF03873 Anti sigma-E protein RseA, C-terminal domain LLJ08_RS15050 PF03872 Anti sigma-E protein RseA, N-terminal domain LLJ08_RS15055 PF08281 Sigma-70, region 4 LLJ08_RS15055 PF04542 Sigma-70 region 2 LLJ08_RS15060 PF00890 FAD binding domain LLJ08_RS15060 PF02910 Fumarate reductase flavoprotein C-term LLJ08_RS15070 PF03937 Flavinator of succinate dehydrogenase LLJ08_RS15075 PF01571 Aminomethyltransferase folate-binding domain LLJ08_RS15090 PF03167 Uracil DNA glycosylase superfamily LLJ08_RS15095 PF13458 Periplasmic binding protein LLJ08_RS15100 PF00378 Enoyl-CoA hydratase/isomerase LLJ08_RS15115 PF02508 Rnf-Nqr subunit, membrane protein LLJ08_RS15120 PF04060 Putative Fe-S cluster LLJ08_RS15125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LLJ08_RS15125 PF12838 4Fe-4S dicluster domain LLJ08_RS15125 PF13375 RnfC Barrel sandwich hybrid domain LLJ08_RS15125 PF10531 SLBB domain LLJ08_RS15130 PF03116 NQR2, RnfD, RnfE family LLJ08_RS15135 PF04205 FMN-binding domain LLJ08_RS15140 PF02508 Rnf-Nqr subunit, membrane protein LLJ08_RS15145 PF10576 Iron-sulfur binding domain of endonuclease III LLJ08_RS15145 PF00633 Helix-hairpin-helix motif LLJ08_RS15145 PF00730 HhH-GPD superfamily base excision DNA repair protein LLJ08_RS15155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLJ08_RS15160 PF00764 Arginosuccinate synthase LLJ08_RS15170 PF01979 Amidohydrolase family LLJ08_RS15175 PF00929 Exonuclease LLJ08_RS15180 PF14821 Threonine synthase N terminus LLJ08_RS15180 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS15185 PF01842 ACT domain LLJ08_RS15185 PF03447 Homoserine dehydrogenase, NAD binding domain LLJ08_RS15185 PF00742 Homoserine dehydrogenase LLJ08_RS15190 PF04828 Glutathione-dependent formaldehyde-activating enzyme LLJ08_RS15195 PF10411 Disulfide bond isomerase protein N-terminus LLJ08_RS15195 PF13098 Thioredoxin-like domain LLJ08_RS15200 PF02899 Phage integrase, N-terminal SAM-like domain LLJ08_RS15200 PF00589 Phage integrase family LLJ08_RS15205 PF01245 Ribosomal protein L19 LLJ08_RS15210 PF01746 tRNA (Guanine-1)-methyltransferase LLJ08_RS15215 PF01782 RimM N-terminal domain LLJ08_RS15215 PF05239 PRC-barrel domain LLJ08_RS15220 PF00886 Ribosomal protein S16 LLJ08_RS15225 PF00448 SRP54-type protein, GTPase domain LLJ08_RS15225 PF02978 Signal peptide binding domain LLJ08_RS15225 PF02881 SRP54-type protein, helical bundle domain LLJ08_RS15230 PF01578 Cytochrome C assembly protein LLJ08_RS15235 PF00571 CBS domain LLJ08_RS15235 PF03471 Transporter associated domain LLJ08_RS15235 PF01595 Cyclin M transmembrane N-terminal domain LLJ08_RS15240 PF02222 ATP-grasp domain LLJ08_RS15240 PF01370 NAD dependent epimerase/dehydratase family LLJ08_RS15250 PF00132 Bacterial transferase hexapeptide (six repeats) LLJ08_RS15255 PF00293 NUDIX domain LLJ08_RS15260 PF09297 NADH pyrophosphatase zinc ribbon domain LLJ08_RS15260 PF00293 NUDIX domain LLJ08_RS15265 PF03734 L,D-transpeptidase catalytic domain LLJ08_RS15270 PF01784 NIF3 (NGG1p interacting factor 3) LLJ08_RS15275 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LLJ08_RS15275 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LLJ08_RS15275 PF02769 AIR synthase related protein, C-terminal domain LLJ08_RS15280 PF00005 ABC transporter LLJ08_RS15285 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS15290 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS15295 PF00497 Bacterial extracellular solute-binding proteins, family 3 LLJ08_RS15300 PF02230 Phospholipase/Carboxylesterase LLJ08_RS15305 PF00270 DEAD/DEAH box helicase LLJ08_RS15305 PF00271 Helicase conserved C-terminal domain LLJ08_RS15315 PF02391 MoaE protein LLJ08_RS15320 PF02597 ThiS family LLJ08_RS15325 PF01967 MoaC family LLJ08_RS15330 PF02562 PhoH-like protein LLJ08_RS15330 PF13638 PIN domain LLJ08_RS15335 PF01545 Cation efflux family LLJ08_RS15335 PF16916 Dimerisation domain of Zinc Transporter LLJ08_RS15340 PF03883 Peroxide stress protein YaaA LLJ08_RS15350 PF01050 Mannose-6-phosphate isomerase LLJ08_RS15350 PF00483 Nucleotidyl transferase LLJ08_RS15360 PF05872 Bacterial protein of unknown function (DUF853) LLJ08_RS15370 PF01842 ACT domain LLJ08_RS15370 PF00551 Formyl transferase LLJ08_RS15380 PF08411 Exonuclease C-terminal LLJ08_RS15380 PF00929 Exonuclease LLJ08_RS15405 PF07726 ATPase family associated with various cellular activities (AAA) LLJ08_RS15405 PF17863 AAA lid domain LLJ08_RS15430 PF02887 Pyruvate kinase, alpha/beta domain LLJ08_RS15430 PF00224 Pyruvate kinase, barrel domain LLJ08_RS15435 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS15435 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS15440 PF08448 PAS fold LLJ08_RS15440 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS15445 PF05683 Fumarase C-terminus LLJ08_RS15445 PF05681 Fumarate hydratase (Fumerase) LLJ08_RS15450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS15450 PF08447 PAS fold LLJ08_RS15455 PF09905 DNA-binding protein VF530 LLJ08_RS15460 PF01965 DJ-1/PfpI family LLJ08_RS15465 PF13091 PLD-like domain LLJ08_RS15465 PF13396 Phospholipase_D-nuclease N-terminal LLJ08_RS15490 PF00596 Class II Aldolase and Adducin N-terminal domain LLJ08_RS15495 PF00258 Flavodoxin LLJ08_RS15510 PF02152 Dihydroneopterin aldolase LLJ08_RS15530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LLJ08_RS15530 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS15535 PF16925 Tetracyclin repressor-like, C-terminal domain LLJ08_RS15535 PF00440 Bacterial regulatory proteins, tetR family LLJ08_RS15540 PF00255 Glutathione peroxidase LLJ08_RS15545 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LLJ08_RS15550 PF00871 Acetokinase family LLJ08_RS15555 PF07085 DRTGG domain LLJ08_RS15555 PF01515 Phosphate acetyl/butaryl transferase LLJ08_RS15560 PF01553 Acyltransferase LLJ08_RS15565 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS15565 PF00563 EAL domain LLJ08_RS15565 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS15570 PF09308 LuxQ, periplasmic LLJ08_RS15570 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS15570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS15570 PF00072 Response regulator receiver domain LLJ08_RS15575 PF13488 Glycine zipper LLJ08_RS15575 PF00691 OmpA family LLJ08_RS15580 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS15585 PF00501 AMP-binding enzyme LLJ08_RS15585 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS15590 PF01810 LysE type translocator LLJ08_RS15595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLJ08_RS15595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLJ08_RS15600 PF08468 Methyltransferase small domain N-terminal LLJ08_RS15600 PF05175 Methyltransferase small domain LLJ08_RS15605 PF01169 Uncharacterized protein family UPF0016 LLJ08_RS15615 PF01435 Peptidase family M48 LLJ08_RS15620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS15620 PF02743 Cache domain LLJ08_RS15620 PF00672 HAMP domain LLJ08_RS15650 PF07044 Protein of unknown function (DUF1329) LLJ08_RS15665 PF06039 Malate:quinone oxidoreductase (Mqo) LLJ08_RS15675 PF01740 STAS domain LLJ08_RS15675 PF00916 Sulfate permease family LLJ08_RS15680 PF00106 short chain dehydrogenase LLJ08_RS15685 PF03641 Possible lysine decarboxylase LLJ08_RS15705 PF02308 MgtC family LLJ08_RS15710 PF07995 Glucose / Sorbosone dehydrogenase LLJ08_RS15730 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LLJ08_RS15735 PF00091 Tubulin/FtsZ family, GTPase domain LLJ08_RS15735 PF12327 FtsZ family, C-terminal domain LLJ08_RS15740 PF02491 SHS2 domain inserted in FTSA LLJ08_RS15745 PF03799 Cell division protein FtsQ LLJ08_RS15745 PF08478 POTRA domain, FtsQ-type LLJ08_RS15750 PF01820 D-ala D-ala ligase N-terminus LLJ08_RS15750 PF07478 D-ala D-ala ligase C-terminus LLJ08_RS15755 PF02875 Mur ligase family, glutamate ligase domain LLJ08_RS15755 PF08245 Mur ligase middle domain LLJ08_RS15755 PF01225 Mur ligase family, catalytic domain LLJ08_RS15760 PF04101 Glycosyltransferase family 28 C-terminal domain LLJ08_RS15760 PF03033 Glycosyltransferase family 28 N-terminal domain LLJ08_RS15765 PF01098 Cell cycle protein LLJ08_RS15770 PF08245 Mur ligase middle domain LLJ08_RS15770 PF02875 Mur ligase family, glutamate ligase domain LLJ08_RS15775 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LLJ08_RS15775 PF00953 Glycosyl transferase family 4 LLJ08_RS15780 PF01225 Mur ligase family, catalytic domain LLJ08_RS15780 PF02875 Mur ligase family, glutamate ligase domain LLJ08_RS15780 PF08245 Mur ligase middle domain LLJ08_RS15785 PF01225 Mur ligase family, catalytic domain LLJ08_RS15785 PF02875 Mur ligase family, glutamate ligase domain LLJ08_RS15785 PF08245 Mur ligase middle domain LLJ08_RS15790 PF03717 Penicillin-binding Protein dimerisation domain LLJ08_RS15790 PF00905 Penicillin binding protein transpeptidase domain LLJ08_RS15795 PF04999 Cell division protein FtsL LLJ08_RS15800 PF01795 MraW methylase family LLJ08_RS15805 PF02381 MraZ protein, putative antitoxin-like LLJ08_RS15815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LLJ08_RS15820 PF04348 LppC putative lipoprotein LLJ08_RS15825 PF02021 Uncharacterised protein family UPF0102 LLJ08_RS15830 PF13580 SIS domain LLJ08_RS15835 PF04972 BON domain LLJ08_RS15840 PF04386 Stringent starvation protein B LLJ08_RS15845 PF02798 Glutathione S-transferase, N-terminal domain LLJ08_RS15845 PF00043 Glutathione S-transferase, C-terminal domain LLJ08_RS15850 PF02167 Cytochrome C1 family LLJ08_RS15855 PF00032 Cytochrome b(C-terminal)/b6/petD LLJ08_RS15855 PF00033 Cytochrome b/b6/petB LLJ08_RS15860 PF00355 Rieske [2Fe-2S] domain LLJ08_RS15860 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LLJ08_RS15865 PF00380 Ribosomal protein S9/S16 LLJ08_RS15870 PF00572 Ribosomal protein L13 LLJ08_RS15875 PF00248 Aldo/keto reductase family LLJ08_RS15885 PF03884 DNA gyrase inhibitor YacG LLJ08_RS15890 PF01121 Dephospho-CoA kinase LLJ08_RS15895 PF01478 Type IV leader peptidase family LLJ08_RS15895 PF06750 Bacterial Peptidase A24 N-terminal domain LLJ08_RS15900 PF00482 Type II secretion system (T2SS), protein F LLJ08_RS15905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LLJ08_RS15905 PF00437 Type II/IV secretion system protein LLJ08_RS15920 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS15925 PF01507 Phosphoadenosine phosphosulfate reductase family LLJ08_RS15930 PF01784 NIF3 (NGG1p interacting factor 3) LLJ08_RS15935 PF13180 PDZ domain LLJ08_RS15940 PF00155 Aminotransferase class I and II LLJ08_RS15945 PF00815 Histidinol dehydrogenase LLJ08_RS15950 PF01634 ATP phosphoribosyltransferase LLJ08_RS15955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LLJ08_RS15965 PF06146 Phosphate-starvation-inducible E LLJ08_RS15975 PF05494 MlaC protein LLJ08_RS15980 PF02470 MlaD protein LLJ08_RS15985 PF02405 Permease MlaE LLJ08_RS15990 PF00005 ABC transporter LLJ08_RS15995 PF00571 CBS domain LLJ08_RS15995 PF01380 SIS domain LLJ08_RS16015 PF12399 Branched-chain amino acid ATP-binding cassette transporter LLJ08_RS16015 PF00005 ABC transporter LLJ08_RS16020 PF00309 Sigma-54 factor, Activator interacting domain (AID) LLJ08_RS16020 PF04963 Sigma-54 factor, core binding domain LLJ08_RS16020 PF04552 Sigma-54, DNA binding domain LLJ08_RS16025 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LLJ08_RS16030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LLJ08_RS16035 PF03668 P-loop ATPase protein family LLJ08_RS16040 PF00381 PTS HPr component phosphorylation site LLJ08_RS16045 PF01523 Putative modulator of DNA gyrase LLJ08_RS16050 PF04751 Protein of unknown function (DUF615) LLJ08_RS16055 PF01523 Putative modulator of DNA gyrase LLJ08_RS16060 PF00795 Carbon-nitrogen hydrolase LLJ08_RS16070 PF10150 Ribonuclease E/G family LLJ08_RS16070 PF00575 S1 RNA binding domain LLJ08_RS16075 PF02545 Maf-like protein LLJ08_RS16090 PF04085 rod shape-determining protein MreC LLJ08_RS16100 PF02686 Glu-tRNAGln amidotransferase C subunit LLJ08_RS16105 PF01425 Amidase LLJ08_RS16110 PF02934 GatB/GatE catalytic domain LLJ08_RS16110 PF02637 GatB domain LLJ08_RS16115 PF03330 Lytic transglycolase LLJ08_RS16120 PF01699 Sodium/calcium exchanger protein LLJ08_RS16125 PF01699 Sodium/calcium exchanger protein LLJ08_RS16140 PF08525 Opacity-associated protein A N-terminal motif LLJ08_RS16140 PF01551 Peptidase family M23 LLJ08_RS16140 PF01476 LysM domain LLJ08_RS16150 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS16150 PF00072 Response regulator receiver domain LLJ08_RS16155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS16155 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS16165 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS16165 PF00593 TonB dependent receptor LLJ08_RS16185 PF00258 Flavodoxin LLJ08_RS16185 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS16185 PF00667 FAD binding domain LLJ08_RS16190 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS16190 PF00593 TonB dependent receptor LLJ08_RS16195 PF13640 2OG-Fe(II) oxygenase superfamily LLJ08_RS16195 PF18331 PKHD-type hydroxylase C-terminal domain LLJ08_RS16205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LLJ08_RS16205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LLJ08_RS16210 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS16210 PF03144 Elongation factor Tu domain 2 LLJ08_RS16210 PF16658 Class II release factor RF3, C-terminal domain LLJ08_RS16215 PF04480 Protein of unknown function (DUF559) LLJ08_RS16220 PF01011 PQQ enzyme repeat LLJ08_RS16225 PF02378 Phosphotransferase system, EIIC LLJ08_RS16225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LLJ08_RS16230 PF00294 pfkB family carbohydrate kinase LLJ08_RS16235 PF00391 PEP-utilising enzyme, mobile domain LLJ08_RS16235 PF02896 PEP-utilising enzyme, TIM barrel domain LLJ08_RS16235 PF00381 PTS HPr component phosphorylation site LLJ08_RS16235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LLJ08_RS16235 PF05524 PEP-utilising enzyme, N-terminal LLJ08_RS16240 PF00356 Bacterial regulatory proteins, lacI family LLJ08_RS16240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LLJ08_RS16250 PF13847 Methyltransferase domain LLJ08_RS16280 PF01554 MatE LLJ08_RS16290 PF17810 Arginine decarboxylase helical bundle domain LLJ08_RS16290 PF17944 Arginine decarboxylase C-terminal helical extension LLJ08_RS16290 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LLJ08_RS16295 PF01253 Translation initiation factor SUI1 LLJ08_RS16300 PF01266 FAD dependent oxidoreductase LLJ08_RS16305 PF14245 Type IV pilin PilA LLJ08_RS16305 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS16310 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS16310 PF00114 Pilin (bacterial filament) LLJ08_RS16330 PF05567 Neisseria PilC beta-propeller domain LLJ08_RS16335 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LLJ08_RS16335 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS16340 PF02401 LytB protein LLJ08_RS16345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LLJ08_RS16350 PF01252 Signal peptidase (SPase) II LLJ08_RS16355 PF06827 Zinc finger found in FPG and IleRS LLJ08_RS16355 PF00133 tRNA synthetases class I (I, L, M and V) LLJ08_RS16355 PF08264 Anticodon-binding domain of tRNA LLJ08_RS16360 PF06574 FAD synthetase LLJ08_RS16360 PF01687 Riboflavin kinase LLJ08_RS16365 PF03023 Lipid II flippase MurJ LLJ08_RS16370 PF01649 Ribosomal protein S20 LLJ08_RS16375 PF05981 CreA protein LLJ08_RS16380 PF00696 Amino acid kinase family LLJ08_RS16380 PF01472 PUA domain LLJ08_RS16385 PF01018 GTP1/OBG LLJ08_RS16385 PF01926 50S ribosome-binding GTPase LLJ08_RS16390 PF01016 Ribosomal L27 protein LLJ08_RS16395 PF00829 Ribosomal prokaryotic L21 protein LLJ08_RS16400 PF00348 Polyprenyl synthetase LLJ08_RS16410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LLJ08_RS16410 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LLJ08_RS16420 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LLJ08_RS16430 PF03350 Uncharacterized protein family, UPF0114 LLJ08_RS16440 PF13654 AAA domain LLJ08_RS16440 PF05362 Lon protease (S16) C-terminal proteolytic domain LLJ08_RS16445 PF03150 Di-haem cytochrome c peroxidase LLJ08_RS16445 PF00034 Cytochrome c LLJ08_RS16450 PF01741 Large-conductance mechanosensitive channel, MscL LLJ08_RS16465 PF18073 Rubredoxin metal binding domain LLJ08_RS16470 PF07238 PilZ domain LLJ08_RS16480 PF00464 Serine hydroxymethyltransferase LLJ08_RS16485 PF12848 ABC transporter LLJ08_RS16485 PF00005 ABC transporter LLJ08_RS16500 PF09345 Domain of unknown function (DUF1987) LLJ08_RS16505 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS16510 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LLJ08_RS16510 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LLJ08_RS16515 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS16515 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS16520 PF05175 Methyltransferase small domain LLJ08_RS16525 PF13411 MerR HTH family regulatory protein LLJ08_RS16535 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LLJ08_RS16535 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LLJ08_RS16540 PF03450 CO dehydrogenase flavoprotein C-terminal domain LLJ08_RS16540 PF00941 FAD binding domain in molybdopterin dehydrogenase LLJ08_RS16545 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS16545 PF01799 [2Fe-2S] binding domain LLJ08_RS16555 PF13478 XdhC Rossmann domain LLJ08_RS16555 PF02625 XdhC and CoxI family LLJ08_RS16560 PF01965 DJ-1/PfpI family LLJ08_RS16565 PF00860 Permease family LLJ08_RS16570 PF05958 tRNA (Uracil-5-)-methyltransferase LLJ08_RS16575 PF00753 Metallo-beta-lactamase superfamily LLJ08_RS16580 PF00111 2Fe-2S iron-sulfur cluster binding domain LLJ08_RS16580 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS16580 PF00970 Oxidoreductase FAD-binding domain LLJ08_RS16605 PF01219 Prokaryotic diacylglycerol kinase LLJ08_RS16620 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS16620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS16620 PF00672 HAMP domain LLJ08_RS16625 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS16625 PF00072 Response regulator receiver domain LLJ08_RS16635 PF00501 AMP-binding enzyme LLJ08_RS16645 PF00106 short chain dehydrogenase LLJ08_RS16655 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS16655 PF00072 Response regulator receiver domain LLJ08_RS16660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS16660 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS16665 PF01292 Prokaryotic cytochrome b561 LLJ08_RS16670 PF00994 Probable molybdopterin binding domain LLJ08_RS16670 PF03454 MoeA C-terminal region (domain IV) LLJ08_RS16670 PF03453 MoeA N-terminal region (domain I and II) LLJ08_RS16675 PF00994 Probable molybdopterin binding domain LLJ08_RS16680 PF04055 Radical SAM superfamily LLJ08_RS16680 PF06463 Molybdenum Cofactor Synthesis C LLJ08_RS16685 PF09312 SurA N-terminal domain LLJ08_RS16690 PF02665 Nitrate reductase gamma subunit LLJ08_RS16695 PF02613 Nitrate reductase delta subunit LLJ08_RS16700 PF14711 Respiratory nitrate reductase beta C-terminal LLJ08_RS16700 PF13247 4Fe-4S dicluster domain LLJ08_RS16705 PF14710 Respiratory nitrate reductase alpha N-terminal LLJ08_RS16705 PF00384 Molybdopterin oxidoreductase LLJ08_RS16705 PF01568 Molydopterin dinucleotide binding domain LLJ08_RS16710 PF07690 Major Facilitator Superfamily LLJ08_RS16720 PF07690 Major Facilitator Superfamily LLJ08_RS16725 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LLJ08_RS16725 PF00672 HAMP domain LLJ08_RS16725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS16725 PF07730 Histidine kinase LLJ08_RS16730 PF00072 Response regulator receiver domain LLJ08_RS16730 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS16755 PF04228 Putative neutral zinc metallopeptidase LLJ08_RS16775 PF00850 Histone deacetylase domain LLJ08_RS16785 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS16785 PF00107 Zinc-binding dehydrogenase LLJ08_RS16800 PF00271 Helicase conserved C-terminal domain LLJ08_RS16800 PF00270 DEAD/DEAH box helicase LLJ08_RS16805 PF02254 TrkA-N domain LLJ08_RS16805 PF00999 Sodium/hydrogen exchanger family LLJ08_RS16820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS16820 PF00672 HAMP domain LLJ08_RS16820 PF02743 Cache domain LLJ08_RS16825 PF00209 Sodium:neurotransmitter symporter family LLJ08_RS16830 PF02798 Glutathione S-transferase, N-terminal domain LLJ08_RS16830 PF14497 Glutathione S-transferase, C-terminal domain LLJ08_RS16840 PF04209 homogentisate 1,2-dioxygenase LLJ08_RS16845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLJ08_RS16850 PF00209 Sodium:neurotransmitter symporter family LLJ08_RS16855 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LLJ08_RS16855 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LLJ08_RS16865 PF13404 AsnC-type helix-turn-helix domain LLJ08_RS16865 PF01037 Lrp/AsnC ligand binding domain LLJ08_RS16875 PF02667 Short chain fatty acid transporter LLJ08_RS16885 PF00106 short chain dehydrogenase LLJ08_RS16895 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LLJ08_RS16895 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LLJ08_RS16900 PF00849 RNA pseudouridylate synthase LLJ08_RS16930 PF00072 Response regulator receiver domain LLJ08_RS16930 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS16935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS16950 PF00149 Calcineurin-like phosphoesterase LLJ08_RS16950 PF12320 Type 5 capsule protein repressor C-terminal domain LLJ08_RS16960 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS16960 PF00593 TonB dependent receptor LLJ08_RS16965 PF01497 Periplasmic binding protein LLJ08_RS16975 PF00925 GTP cyclohydrolase II LLJ08_RS16985 PF04608 Phosphatidylglycerophosphatase A LLJ08_RS16990 PF02769 AIR synthase related protein, C-terminal domain LLJ08_RS16990 PF00586 AIR synthase related protein, N-terminal domain LLJ08_RS16995 PF01029 NusB family LLJ08_RS17000 PF00885 6,7-dimethyl-8-ribityllumazine synthase LLJ08_RS17005 PF00925 GTP cyclohydrolase II LLJ08_RS17005 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LLJ08_RS17010 PF00677 Lumazine binding domain LLJ08_RS17015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LLJ08_RS17015 PF01872 RibD C-terminal domain LLJ08_RS17020 PF03477 ATP cone domain LLJ08_RS17040 PF01206 Sulfurtransferase TusA LLJ08_RS17045 PF04143 Sulphur transport LLJ08_RS17050 PF00085 Thioredoxin LLJ08_RS17065 PF00005 ABC transporter LLJ08_RS17085 PF03544 Gram-negative bacterial TonB protein C-terminal LLJ08_RS17090 PF02472 Biopolymer transport protein ExbD/TolR LLJ08_RS17095 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS17100 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS17110 PF03922 OmpW family LLJ08_RS17115 PF16363 GDP-mannose 4,6 dehydratase LLJ08_RS17125 PF00436 Single-strand binding protein family LLJ08_RS17130 PF07690 Major Facilitator Superfamily LLJ08_RS17135 PF17755 UvrA DNA-binding domain LLJ08_RS17135 PF17760 UvrA interaction domain LLJ08_RS17145 PF00199 Catalase LLJ08_RS17145 PF06628 Catalase-related immune-responsive LLJ08_RS17150 PF01196 Ribosomal protein L17 LLJ08_RS17155 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LLJ08_RS17155 PF01000 RNA polymerase Rpb3/RpoA insert domain LLJ08_RS17155 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LLJ08_RS17160 PF00163 Ribosomal protein S4/S9 N-terminal domain LLJ08_RS17160 PF01479 S4 domain LLJ08_RS17165 PF00411 Ribosomal protein S11 LLJ08_RS17170 PF00416 Ribosomal protein S13/S18 LLJ08_RS17175 PF00444 Ribosomal protein L36 LLJ08_RS17180 PF00344 SecY translocase LLJ08_RS17185 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LLJ08_RS17190 PF00327 Ribosomal protein L30p/L7e LLJ08_RS17195 PF00333 Ribosomal protein S5, N-terminal domain LLJ08_RS17195 PF03719 Ribosomal protein S5, C-terminal domain LLJ08_RS17200 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LLJ08_RS17205 PF00347 Ribosomal protein L6 LLJ08_RS17210 PF00410 Ribosomal protein S8 LLJ08_RS17215 PF00253 Ribosomal protein S14p/S29e LLJ08_RS17220 PF00281 Ribosomal protein L5 LLJ08_RS17220 PF00673 ribosomal L5P family C-terminus LLJ08_RS17225 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LLJ08_RS17225 PF00467 KOW motif LLJ08_RS17230 PF00238 Ribosomal protein L14p/L23e LLJ08_RS17235 PF00366 Ribosomal protein S17 LLJ08_RS17240 PF00831 Ribosomal L29 protein LLJ08_RS17245 PF00252 Ribosomal protein L16p/L10e LLJ08_RS17250 PF07650 KH domain LLJ08_RS17250 PF00189 Ribosomal protein S3, C-terminal domain LLJ08_RS17255 PF00237 Ribosomal protein L22p/L17e LLJ08_RS17260 PF00203 Ribosomal protein S19 LLJ08_RS17265 PF00181 Ribosomal Proteins L2, RNA binding domain LLJ08_RS17265 PF03947 Ribosomal Proteins L2, C-terminal domain LLJ08_RS17270 PF00276 Ribosomal protein L23 LLJ08_RS17275 PF00573 Ribosomal protein L4/L1 family LLJ08_RS17280 PF00297 Ribosomal protein L3 LLJ08_RS17285 PF00338 Ribosomal protein S10p/S20e LLJ08_RS17290 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS17290 PF03144 Elongation factor Tu domain 2 LLJ08_RS17290 PF03143 Elongation factor Tu C-terminal domain LLJ08_RS17295 PF00679 Elongation factor G C-terminus LLJ08_RS17295 PF14492 Elongation Factor G, domain II LLJ08_RS17295 PF03144 Elongation factor Tu domain 2 LLJ08_RS17295 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS17295 PF03764 Elongation factor G, domain IV LLJ08_RS17300 PF00177 Ribosomal protein S7p/S5e LLJ08_RS17305 PF00164 Ribosomal protein S12/S23 LLJ08_RS17310 PF04997 RNA polymerase Rpb1, domain 1 LLJ08_RS17310 PF00623 RNA polymerase Rpb1, domain 2 LLJ08_RS17310 PF04983 RNA polymerase Rpb1, domain 3 LLJ08_RS17310 PF05000 RNA polymerase Rpb1, domain 4 LLJ08_RS17310 PF04998 RNA polymerase Rpb1, domain 5 LLJ08_RS17315 PF04565 RNA polymerase Rpb2, domain 3 LLJ08_RS17315 PF04560 RNA polymerase Rpb2, domain 7 LLJ08_RS17315 PF00562 RNA polymerase Rpb2, domain 6 LLJ08_RS17315 PF10385 RNA polymerase beta subunit external 1 domain LLJ08_RS17315 PF04563 RNA polymerase beta subunit LLJ08_RS17315 PF04561 RNA polymerase Rpb2, domain 2 LLJ08_RS17320 PF00542 Ribosomal protein L7/L12 C-terminal domain LLJ08_RS17320 PF16320 Ribosomal protein L7/L12 dimerisation domain LLJ08_RS17325 PF00466 Ribosomal protein L10 LLJ08_RS17330 PF00687 Ribosomal protein L1p/L10e family LLJ08_RS17335 PF03946 Ribosomal protein L11, N-terminal domain LLJ08_RS17335 PF00298 Ribosomal protein L11, RNA binding domain LLJ08_RS17340 PF02357 Transcription termination factor nusG LLJ08_RS17340 PF00467 KOW motif LLJ08_RS17345 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LLJ08_RS17355 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS17355 PF03144 Elongation factor Tu domain 2 LLJ08_RS17355 PF03143 Elongation factor Tu C-terminal domain LLJ08_RS17380 PF03309 Type III pantothenate kinase LLJ08_RS17385 PF08279 HTH domain LLJ08_RS17385 PF03099 Biotin/lipoate A/B protein ligase family LLJ08_RS17385 PF02237 Biotin protein ligase C terminal domain LLJ08_RS17420 PF01479 S4 domain LLJ08_RS17420 PF00579 tRNA synthetases class I (W and Y) LLJ08_RS17425 PF04225 Opacity-associated protein A LysM-like domain LLJ08_RS17425 PF01551 Peptidase family M23 LLJ08_RS17430 PF03702 Anhydro-N-acetylmuramic acid kinase LLJ08_RS17435 PF01521 Iron-sulphur cluster biosynthesis LLJ08_RS17440 PF01118 Semialdehyde dehydrogenase, NAD binding domain LLJ08_RS17440 PF02774 Semialdehyde dehydrogenase, dimerisation domain LLJ08_RS17445 PF03653 Uncharacterised protein family (UPF0093) LLJ08_RS17455 PF06480 FtsH Extracellular LLJ08_RS17455 PF01434 Peptidase family M41 LLJ08_RS17455 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS17455 PF17862 AAA+ lid domain LLJ08_RS17460 PF01230 HIT domain LLJ08_RS17465 PF03232 Ubiquinone biosynthesis protein COQ7 LLJ08_RS17470 PF02675 S-adenosylmethionine decarboxylase LLJ08_RS17475 PF02566 OsmC-like protein LLJ08_RS17480 PF00027 Cyclic nucleotide-binding domain LLJ08_RS17480 PF13545 Crp-like helix-turn-helix domain LLJ08_RS17485 PF00218 Indole-3-glycerol phosphate synthase LLJ08_RS17490 PF02885 Glycosyl transferase family, helical bundle domain LLJ08_RS17490 PF00591 Glycosyl transferase family, a/b domain LLJ08_RS17495 PF00117 Glutamine amidotransferase class-I LLJ08_RS17500 PF04715 Anthranilate synthase component I, N terminal region LLJ08_RS17500 PF00425 chorismate binding enzyme LLJ08_RS17505 PF13419 Haloacid dehalogenase-like hydrolase LLJ08_RS17510 PF00834 Ribulose-phosphate 3 epimerase family LLJ08_RS17515 PF00202 Aminotransferase class-III LLJ08_RS17520 PF00171 Aldehyde dehydrogenase family LLJ08_RS17525 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS17530 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS17540 PF00005 ABC transporter LLJ08_RS17540 PF08402 TOBE domain LLJ08_RS17545 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS17545 PF00072 Response regulator receiver domain LLJ08_RS17550 PF07730 Histidine kinase LLJ08_RS17550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS17550 PF05384 Sensor protein DegS LLJ08_RS17560 PF00226 DnaJ domain LLJ08_RS17560 PF05099 Tellurite resistance protein TerB LLJ08_RS17565 PF00483 Nucleotidyl transferase LLJ08_RS17570 PF01636 Phosphotransferase enzyme family LLJ08_RS17575 PF04453 LPS transport system D LLJ08_RS17575 PF03968 OstA-like protein LLJ08_RS17580 PF00639 PPIC-type PPIASE domain LLJ08_RS17580 PF09312 SurA N-terminal domain LLJ08_RS17585 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LLJ08_RS17590 PF00398 Ribosomal RNA adenine dimethylase LLJ08_RS17595 PF04379 ApaG domain LLJ08_RS17600 PF00149 Calcineurin-like phosphoesterase LLJ08_RS17605 PF00581 Rhodanese-like domain LLJ08_RS17610 PF08298 PrkA AAA domain LLJ08_RS17610 PF06798 PrkA serine protein kinase C-terminal domain LLJ08_RS17615 PF04285 Protein of unknown function (DUF444) LLJ08_RS17620 PF04293 SpoVR like protein LLJ08_RS17625 PF01966 HD domain LLJ08_RS17625 PF01743 Poly A polymerase head domain LLJ08_RS17625 PF12627 Probable RNA and SrmB- binding site of polymerase A LLJ08_RS17630 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LLJ08_RS17640 PF02660 Glycerol-3-phosphate acyltransferase LLJ08_RS17645 PF00814 Glycoprotease family LLJ08_RS17650 PF01165 Ribosomal protein S21 LLJ08_RS17655 PF08278 DNA primase DnaG DnaB-binding LLJ08_RS17655 PF13662 Toprim domain LLJ08_RS17655 PF08275 DNA primase catalytic core, N-terminal domain LLJ08_RS17655 PF01807 CHC2 zinc finger LLJ08_RS17655 PF10410 DnaB-helicase binding domain of primase LLJ08_RS17660 PF04539 Sigma-70 region 3 LLJ08_RS17660 PF04545 Sigma-70, region 4 LLJ08_RS17660 PF00140 Sigma-70 factor, region 1.2 LLJ08_RS17660 PF04546 Sigma-70, non-essential region LLJ08_RS17660 PF04542 Sigma-70 region 2 LLJ08_RS17660 PF03979 Sigma-70 factor, region 1.1 LLJ08_RS17670 PF03600 Citrate transporter LLJ08_RS17670 PF02080 TrkA-C domain LLJ08_RS17675 PF01053 Cys/Met metabolism PLP-dependent enzyme LLJ08_RS17680 PF00085 Thioredoxin LLJ08_RS17695 PF00550 Phosphopantetheine attachment site LLJ08_RS17700 PF00550 Phosphopantetheine attachment site LLJ08_RS17710 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS17710 PF00501 AMP-binding enzyme LLJ08_RS17715 PF00535 Glycosyl transferase family 2 LLJ08_RS17725 PF00221 Aromatic amino acid lyase LLJ08_RS17755 PF00109 Beta-ketoacyl synthase, N-terminal domain LLJ08_RS17755 PF02801 Beta-ketoacyl synthase, C-terminal domain LLJ08_RS17770 PF00109 Beta-ketoacyl synthase, N-terminal domain LLJ08_RS17770 PF02801 Beta-ketoacyl synthase, C-terminal domain LLJ08_RS17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS17785 PF03466 LysR substrate binding domain LLJ08_RS17790 PF07690 Major Facilitator Superfamily LLJ08_RS17795 PF01208 Uroporphyrinogen decarboxylase (URO-D) LLJ08_RS17800 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS17800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LLJ08_RS17805 PF00310 Glutamine amidotransferases class-II LLJ08_RS17805 PF04898 Glutamate synthase central domain LLJ08_RS17805 PF01645 Conserved region in glutamate synthase LLJ08_RS17805 PF01493 GXGXG motif LLJ08_RS17815 PF01761 3-dehydroquinate synthase LLJ08_RS17820 PF01202 Shikimate kinase LLJ08_RS17825 PF11741 AMIN domain LLJ08_RS17825 PF00263 Bacterial type II and III secretion system protein LLJ08_RS17825 PF03958 Bacterial type II/III secretion system short domain LLJ08_RS17825 PF07660 Secretin and TonB N terminus short domain LLJ08_RS17830 PF04351 Pilus assembly protein, PilP LLJ08_RS17835 PF04350 Pilus assembly protein, PilO LLJ08_RS17840 PF05137 Fimbrial assembly protein (PilN) LLJ08_RS17845 PF11104 Type IV pilus assembly protein PilM; LLJ08_RS17850 PF17092 Penicillin-binding protein OB-like domain LLJ08_RS17850 PF00912 Transglycosylase LLJ08_RS17850 PF00905 Penicillin binding protein transpeptidase domain LLJ08_RS17855 PF00390 Malic enzyme, N-terminal domain LLJ08_RS17855 PF03949 Malic enzyme, NAD binding domain LLJ08_RS17865 PF01197 Ribosomal protein L31 LLJ08_RS17870 PF00270 DEAD/DEAH box helicase LLJ08_RS17870 PF00271 Helicase conserved C-terminal domain LLJ08_RS17870 PF17764 3′ DNA-binding domain (3′BD) LLJ08_RS17870 PF18074 Primosomal protein N C-terminal domain LLJ08_RS17870 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LLJ08_RS17875 PF00750 tRNA synthetases class I (R) LLJ08_RS17875 PF03485 Arginyl tRNA synthetase N terminal domain LLJ08_RS17875 PF05746 DALR anticodon binding domain LLJ08_RS17885 PF00175 Oxidoreductase NAD-binding domain LLJ08_RS17890 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LLJ08_RS17895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLJ08_RS17895 PF07498 Rho termination factor, N-terminal domain LLJ08_RS17895 PF07497 Rho termination factor, RNA-binding domain LLJ08_RS17900 PF00085 Thioredoxin LLJ08_RS17905 PF02541 Ppx/GppA phosphatase family LLJ08_RS17910 PF13089 Polyphosphate kinase N-terminal domain LLJ08_RS17910 PF02503 Polyphosphate kinase middle domain LLJ08_RS17910 PF13090 Polyphosphate kinase C-terminal domain 2 LLJ08_RS17910 PF17941 Polyphosphate kinase C-terminal domain 1 LLJ08_RS17915 PF00490 Delta-aminolevulinic acid dehydratase LLJ08_RS17925 PF03061 Thioesterase superfamily LLJ08_RS17930 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS17930 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS17930 PF00563 EAL domain LLJ08_RS17935 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LLJ08_RS17940 PF01810 LysE type translocator LLJ08_RS17945 PF03741 Integral membrane protein TerC family LLJ08_RS17955 PF12848 ABC transporter LLJ08_RS17955 PF00005 ABC transporter LLJ08_RS17970 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LLJ08_RS17975 PF02600 Disulfide bond formation protein DsbB LLJ08_RS17990 PF02602 Uroporphyrinogen-III synthase HemD LLJ08_RS17995 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LLJ08_RS17995 PF03900 Porphobilinogen deaminase, C-terminal domain LLJ08_RS18000 PF04397 LytTr DNA-binding domain LLJ08_RS18000 PF00072 Response regulator receiver domain LLJ08_RS18005 PF06580 Histidine kinase LLJ08_RS18005 PF07694 5TMR of 5TMR-LYT LLJ08_RS18010 PF14698 Argininosuccinate lyase C-terminal LLJ08_RS18010 PF00206 Lyase LLJ08_RS18015 PF02224 Cytidylate kinase LLJ08_RS18045 PF12633 Adenylate cyclase NT domain LLJ08_RS18045 PF01295 Adenylate cyclase, class-I LLJ08_RS18050 PF14760 Rnk N-terminus LLJ08_RS18050 PF01272 Transcription elongation factor, GreA/GreB, C-term LLJ08_RS18055 PF01491 Frataxin-like domain LLJ08_RS18060 PF13627 Prokaryotic lipoprotein-attachment site LLJ08_RS18065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LLJ08_RS18065 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LLJ08_RS18070 PF01678 Diaminopimelate epimerase LLJ08_RS18080 PF00589 Phage integrase family LLJ08_RS18080 PF02899 Phage integrase, N-terminal SAM-like domain LLJ08_RS18085 PF13419 Haloacid dehalogenase-like hydrolase LLJ08_RS18095 PF01894 Uncharacterised protein family UPF0047 LLJ08_RS18100 PF00909 Ammonium Transporter Family LLJ08_RS18105 PF00909 Ammonium Transporter Family LLJ08_RS18110 PF00543 Nitrogen regulatory protein P-II LLJ08_RS18120 PF13335 Magnesium chelatase, subunit ChlI C-terminal LLJ08_RS18120 PF01078 Magnesium chelatase, subunit ChlI LLJ08_RS18125 PF02028 BCCT, betaine/carnitine/choline family transporter LLJ08_RS18130 PF00563 EAL domain LLJ08_RS18130 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS18130 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS18135 PF13361 UvrD-like helicase C-terminal domain LLJ08_RS18135 PF00580 UvrD/REP helicase N-terminal domain LLJ08_RS18140 PF03006 Haemolysin-III related LLJ08_RS18145 PF09339 IclR helix-turn-helix domain LLJ08_RS18145 PF01614 Bacterial transcriptional regulator LLJ08_RS18150 PF00171 Aldehyde dehydrogenase family LLJ08_RS18155 PF00465 Iron-containing alcohol dehydrogenase LLJ08_RS18165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LLJ08_RS18165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LLJ08_RS18170 PF00128 Alpha amylase, catalytic domain LLJ08_RS18175 PF00128 Alpha amylase, catalytic domain LLJ08_RS18175 PF16657 Maltogenic Amylase, C-terminal domain LLJ08_RS18185 PF00156 Phosphoribosyl transferase domain LLJ08_RS18195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LLJ08_RS18210 PF01266 FAD dependent oxidoreductase LLJ08_RS18215 PF01037 Lrp/AsnC ligand binding domain LLJ08_RS18220 PF01266 FAD dependent oxidoreductase LLJ08_RS18225 PF13091 PLD-like domain LLJ08_RS18240 PF17200 Single Cache domain 2 LLJ08_RS18240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS18240 PF00672 HAMP domain LLJ08_RS18245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLJ08_RS18245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLJ08_RS18245 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LLJ08_RS18260 PF04002 RadC-like JAB domain LLJ08_RS18265 PF04127 DNA / pantothenate metabolism flavoprotein LLJ08_RS18265 PF02441 Flavoprotein LLJ08_RS18270 PF00692 dUTPase LLJ08_RS18275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LLJ08_RS18275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LLJ08_RS18275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LLJ08_RS18275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LLJ08_RS18280 PF00696 Amino acid kinase family LLJ08_RS18295 PF00156 Phosphoribosyl transferase domain LLJ08_RS18300 PF03372 Endonuclease/Exonuclease/phosphatase family LLJ08_RS18310 PF01138 3' exoribonuclease family, domain 1 LLJ08_RS18310 PF03725 3' exoribonuclease family, domain 2 LLJ08_RS18315 PF03755 YicC-like family, N-terminal region LLJ08_RS18315 PF08340 Domain of unknown function (DUF1732) LLJ08_RS18320 PF00625 Guanylate kinase LLJ08_RS18325 PF01192 RNA polymerase Rpb6 LLJ08_RS18330 PF02824 TGS domain LLJ08_RS18330 PF13291 ACT domain LLJ08_RS18330 PF04607 Region found in RelA / SpoT proteins LLJ08_RS18335 PF01042 Endoribonuclease L-PSP LLJ08_RS18355 PF01434 Peptidase family M41 LLJ08_RS18355 PF17862 AAA+ lid domain LLJ08_RS18355 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS18360 PF12833 Helix-turn-helix domain LLJ08_RS18360 PF02311 AraC-like ligand binding domain LLJ08_RS18375 PF04536 TPM domain LLJ08_RS18380 PF04011 LemA family LLJ08_RS18385 PF03466 LysR substrate binding domain LLJ08_RS18385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS18390 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS18390 PF00107 Zinc-binding dehydrogenase LLJ08_RS18395 PF02515 CoA-transferase family III LLJ08_RS18400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS18400 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS18400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS18405 PF03466 LysR substrate binding domain LLJ08_RS18415 PF00216 Bacterial DNA-binding protein LLJ08_RS18420 PF07992 Pyridine nucleotide-disulphide oxidoreductase LLJ08_RS18420 PF18113 Rubredoxin binding C-terminal domain LLJ08_RS18425 PF00301 Rubredoxin LLJ08_RS18430 PF02652 L-lactate permease LLJ08_RS18435 PF01274 Malate synthase LLJ08_RS18440 PF03928 Haem-degrading LLJ08_RS18445 PF13183 4Fe-4S dicluster domain LLJ08_RS18445 PF02754 Cysteine-rich domain LLJ08_RS18450 PF01565 FAD binding domain LLJ08_RS18455 PF02913 FAD linked oxidases, C-terminal domain LLJ08_RS18455 PF01565 FAD binding domain LLJ08_RS18460 PF07729 FCD domain LLJ08_RS18460 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS18465 PF04345 Chorismate lyase LLJ08_RS18470 PF01040 UbiA prenyltransferase family LLJ08_RS18475 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS18475 PF00072 Response regulator receiver domain LLJ08_RS18480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS18480 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS18480 PF00989 PAS fold LLJ08_RS18480 PF11808 Phosphate regulon sensor protein PhoR LLJ08_RS18485 PF03471 Transporter associated domain LLJ08_RS18485 PF01595 Cyclin M transmembrane N-terminal domain LLJ08_RS18485 PF00571 CBS domain LLJ08_RS18495 PF08525 Opacity-associated protein A N-terminal motif LLJ08_RS18495 PF01551 Peptidase family M23 LLJ08_RS18495 PF01476 LysM domain LLJ08_RS18500 PF00072 Response regulator receiver domain LLJ08_RS18515 PF12399 Branched-chain amino acid ATP-binding cassette transporter LLJ08_RS18515 PF00005 ABC transporter LLJ08_RS18520 PF00005 ABC transporter LLJ08_RS18525 PF02653 Branched-chain amino acid transport system / permease component LLJ08_RS18535 PF13614 AAA domain LLJ08_RS18540 PF00303 Thymidylate synthase LLJ08_RS18545 PF01790 Prolipoprotein diacylglyceryl transferase LLJ08_RS18550 PF01925 Sulfite exporter TauE/SafE LLJ08_RS18560 PF05524 PEP-utilising enzyme, N-terminal LLJ08_RS18560 PF00391 PEP-utilising enzyme, mobile domain LLJ08_RS18560 PF02896 PEP-utilising enzyme, TIM barrel domain LLJ08_RS18560 PF01590 GAF domain LLJ08_RS18565 PF00293 NUDIX domain LLJ08_RS18580 PF00291 Pyridoxal-phosphate dependent enzyme LLJ08_RS18580 PF00585 C-terminal regulatory domain of Threonine dehydratase LLJ08_RS18585 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LLJ08_RS18590 PF07411 Domain of unknown function (DUF1508) LLJ08_RS18600 PF06977 SdiA-regulated LLJ08_RS18605 PF01557 Fumarylacetoacetate (FAA) hydrolase family LLJ08_RS18610 PF02913 FAD linked oxidases, C-terminal domain LLJ08_RS18610 PF01565 FAD binding domain LLJ08_RS18615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLJ08_RS18615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLJ08_RS18640 PF00072 Response regulator receiver domain LLJ08_RS18640 PF00196 Bacterial regulatory proteins, luxR family LLJ08_RS18665 PF00361 Proton-conducting membrane transporter LLJ08_RS18670 PF00361 Proton-conducting membrane transporter LLJ08_RS18675 PF00361 Proton-conducting membrane transporter LLJ08_RS18675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LLJ08_RS18690 PF03334 Na+/H+ antiporter subunit LLJ08_RS18705 PF01738 Dienelactone hydrolase family LLJ08_RS18705 PF00156 Phosphoribosyl transferase domain LLJ08_RS18710 PF01738 Dienelactone hydrolase family LLJ08_RS18710 PF00156 Phosphoribosyl transferase domain LLJ08_RS18715 PF13416 Bacterial extracellular solute-binding protein LLJ08_RS18720 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS18720 PF00563 EAL domain LLJ08_RS18730 PF00034 Cytochrome c LLJ08_RS18740 PF07308 Protein of unknown function (DUF1456) LLJ08_RS18745 PF00158 Sigma-54 interaction domain LLJ08_RS18745 PF00072 Response regulator receiver domain LLJ08_RS18745 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS18750 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS18750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS18770 PF12697 Alpha/beta hydrolase family LLJ08_RS18780 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS18780 PF00360 Phytochrome region LLJ08_RS18780 PF00563 EAL domain LLJ08_RS18780 PF01590 GAF domain LLJ08_RS18790 PF12833 Helix-turn-helix domain LLJ08_RS18795 PF00593 TonB dependent receptor LLJ08_RS18795 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS18805 PF00756 Putative esterase LLJ08_RS18820 PF00072 Response regulator receiver domain LLJ08_RS18825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS18825 PF00989 PAS fold LLJ08_RS18825 PF17203 Single cache domain 3 LLJ08_RS18825 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LLJ08_RS18830 PF03390 2-hydroxycarboxylate transporter family LLJ08_RS18835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS18835 PF00672 HAMP domain LLJ08_RS18840 PF00679 Elongation factor G C-terminus LLJ08_RS18840 PF03144 Elongation factor Tu domain 2 LLJ08_RS18840 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS18845 PF02926 THUMP domain LLJ08_RS18845 PF02568 Thiamine biosynthesis protein (ThiI) LLJ08_RS18850 PF03951 Glutamine synthetase, beta-Grasp domain LLJ08_RS18850 PF00120 Glutamine synthetase, catalytic domain LLJ08_RS18865 PF00989 PAS fold LLJ08_RS18865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS18865 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS18870 PF00158 Sigma-54 interaction domain LLJ08_RS18870 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS18870 PF00072 Response regulator receiver domain LLJ08_RS18880 PF00588 SpoU rRNA Methylase family LLJ08_RS18885 PF00384 Molybdopterin oxidoreductase LLJ08_RS18890 PF00227 Proteasome subunit LLJ08_RS18895 PF00004 ATPase family associated with various cellular activities (AAA) LLJ08_RS18895 PF07724 AAA domain (Cdc48 subfamily) LLJ08_RS18905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS18905 PF16591 Helical bimodular sensor domain LLJ08_RS18905 PF00672 HAMP domain LLJ08_RS18915 PF01209 ubiE/COQ5 methyltransferase family LLJ08_RS18925 PF03109 ABC1 family LLJ08_RS18930 PF01502 Phosphoribosyl-AMP cyclohydrolase LLJ08_RS18935 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LLJ08_RS18940 PF02416 mttA/Hcf106 family LLJ08_RS18945 PF02416 mttA/Hcf106 family LLJ08_RS18950 PF00902 Sec-independent protein translocase protein (TatC) LLJ08_RS18960 PF03682 Uncharacterised protein family (UPF0158) LLJ08_RS18965 PF02580 D-Tyr-tRNA(Tyr) deacylase LLJ08_RS18970 PF00561 alpha/beta hydrolase fold LLJ08_RS18995 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LLJ08_RS19000 PF00343 Carbohydrate phosphorylase LLJ08_RS19015 PF00459 Inositol monophosphatase family LLJ08_RS19020 PF00293 NUDIX domain LLJ08_RS19025 PF13419 Haloacid dehalogenase-like hydrolase LLJ08_RS19030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19030 PF13426 PAS domain LLJ08_RS19030 PF00072 Response regulator receiver domain LLJ08_RS19035 PF02634 FdhD/NarQ family LLJ08_RS19050 PF00465 Iron-containing alcohol dehydrogenase LLJ08_RS19055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS19055 PF12806 Acetyl-CoA dehydrogenase C-terminal like LLJ08_RS19055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS19055 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS19060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLJ08_RS19060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLJ08_RS19060 PF00378 Enoyl-CoA hydratase/isomerase LLJ08_RS19065 PF03466 LysR substrate binding domain LLJ08_RS19065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS19070 PF08678 Rsbr N terminal LLJ08_RS19070 PF01740 STAS domain LLJ08_RS19075 PF01740 STAS domain LLJ08_RS19080 PF13581 Histidine kinase-like ATPase domain LLJ08_RS19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19090 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS19095 PF13426 PAS domain LLJ08_RS19095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19095 PF00072 Response regulator receiver domain LLJ08_RS19100 PF00313 'Cold-shock' DNA-binding domain LLJ08_RS19125 PF00248 Aldo/keto reductase family LLJ08_RS19135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS19135 PF00672 HAMP domain LLJ08_RS19140 PF13426 PAS domain LLJ08_RS19140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LLJ08_RS19140 PF00672 HAMP domain LLJ08_RS19145 PF00270 DEAD/DEAH box helicase LLJ08_RS19145 PF00570 HRDC domain LLJ08_RS19145 PF16124 RecQ zinc-binding LLJ08_RS19145 PF09382 RQC domain LLJ08_RS19145 PF00271 Helicase conserved C-terminal domain LLJ08_RS19150 PF00881 Nitroreductase family LLJ08_RS19155 PF01293 Phosphoenolpyruvate carboxykinase LLJ08_RS19160 PF01430 Hsp33 protein LLJ08_RS19165 PF01479 S4 domain LLJ08_RS19170 PF18030 RimK PreATP-grasp domain LLJ08_RS19170 PF08443 RimK-like ATP-grasp domain LLJ08_RS19175 PF18030 RimK PreATP-grasp domain LLJ08_RS19175 PF08443 RimK-like ATP-grasp domain LLJ08_RS19180 PF00672 HAMP domain LLJ08_RS19180 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS19180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19185 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS19185 PF00072 Response regulator receiver domain LLJ08_RS19190 PF17674 HHH domain LLJ08_RS19190 PF00575 S1 RNA binding domain LLJ08_RS19190 PF09371 Tex-like protein N-terminal domain LLJ08_RS19190 PF16921 Tex protein YqgF-like domain LLJ08_RS19200 PF04262 Glutamate-cysteine ligase LLJ08_RS19205 PF00696 Amino acid kinase family LLJ08_RS19205 PF00583 Acetyltransferase (GNAT) family LLJ08_RS19210 PF07687 Peptidase dimerisation domain LLJ08_RS19210 PF01546 Peptidase family M20/M25/M40 LLJ08_RS19215 PF01384 Phosphate transporter family LLJ08_RS19220 PF01865 Protein of unknown function DUF47 LLJ08_RS19230 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LLJ08_RS19230 PF00437 Type II/IV secretion system protein LLJ08_RS19240 PF01471 Putative peptidoglycan binding domain LLJ08_RS19240 PF03734 L,D-transpeptidase catalytic domain LLJ08_RS19245 PF00072 Response regulator receiver domain LLJ08_RS19245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19245 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS19245 PF08448 PAS fold LLJ08_RS19245 PF13188 PAS domain LLJ08_RS19255 PF02566 OsmC-like protein LLJ08_RS19260 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS19270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLJ08_RS19290 PF03466 LysR substrate binding domain LLJ08_RS19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS19310 PF00202 Aminotransferase class-III LLJ08_RS19320 PF08543 Phosphomethylpyrimidine kinase LLJ08_RS19325 PF00155 Aminotransferase class I and II LLJ08_RS19325 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS19330 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS19330 PF00155 Aminotransferase class I and II LLJ08_RS19340 PF03475 3-alpha domain LLJ08_RS19340 PF03473 MOSC domain LLJ08_RS19345 PF00155 Aminotransferase class I and II LLJ08_RS19350 PF10417 C-terminal domain of 1-Cys peroxiredoxin LLJ08_RS19350 PF00578 AhpC/TSA family LLJ08_RS19360 PF10055 Uncharacterized small protein (DUF2292) LLJ08_RS19370 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS19375 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS19380 PF00005 ABC transporter LLJ08_RS19380 PF12857 TOBE-like domain LLJ08_RS19385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LLJ08_RS19385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LLJ08_RS19405 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LLJ08_RS19405 PF02222 ATP-grasp domain LLJ08_RS19410 PF00731 AIR carboxylase LLJ08_RS19415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19415 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS19420 PF01261 Xylose isomerase-like TIM barrel LLJ08_RS19420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LLJ08_RS19425 PF00501 AMP-binding enzyme LLJ08_RS19425 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS19430 PF03466 LysR substrate binding domain LLJ08_RS19430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS19435 PF00206 Lyase LLJ08_RS19435 PF10415 Fumarase C C-terminus LLJ08_RS19440 PF00375 Sodium:dicarboxylate symporter family LLJ08_RS19445 PF00392 Bacterial regulatory proteins, gntR family LLJ08_RS19445 PF00155 Aminotransferase class I and II LLJ08_RS19465 PF01235 Sodium:alanine symporter family LLJ08_RS19470 PF00710 Asparaginase, N-terminal LLJ08_RS19470 PF17763 Glutaminase/Asparaginase C-terminal domain LLJ08_RS19480 PF00484 Carbonic anhydrase LLJ08_RS19485 PF04960 Glutaminase LLJ08_RS19500 PF02436 Conserved carboxylase domain LLJ08_RS19500 PF00682 HMGL-like LLJ08_RS19500 PF00364 Biotin-requiring enzyme LLJ08_RS19505 PF02785 Biotin carboxylase C-terminal domain LLJ08_RS19505 PF00289 Biotin carboxylase, N-terminal domain LLJ08_RS19505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LLJ08_RS19510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS19510 PF03466 LysR substrate binding domain LLJ08_RS19520 PF01418 Helix-turn-helix domain, rpiR family LLJ08_RS19520 PF01380 SIS domain LLJ08_RS19520 PF02685 Glucokinase LLJ08_RS19525 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LLJ08_RS19525 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LLJ08_RS19530 PF00583 Acetyltransferase (GNAT) family LLJ08_RS19535 PF00202 Aminotransferase class-III LLJ08_RS19540 PF06339 Ectoine synthase LLJ08_RS19545 PF05721 Phytanoyl-CoA dioxygenase (PhyH) LLJ08_RS19550 PF00696 Amino acid kinase family LLJ08_RS19550 PF13840 ACT domain LLJ08_RS19555 PF04325 Protein of unknown function (DUF465) LLJ08_RS19560 PF01136 Peptidase family U32 LLJ08_RS19560 PF16325 Peptidase family U32 C-terminal domain LLJ08_RS19565 PF00563 EAL domain LLJ08_RS19565 PF03707 Bacterial signalling protein N terminal repeat LLJ08_RS19565 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS19570 PF13361 UvrD-like helicase C-terminal domain LLJ08_RS19570 PF00580 UvrD/REP helicase N-terminal domain LLJ08_RS19575 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS19585 PF00561 alpha/beta hydrolase fold LLJ08_RS19590 PF02566 OsmC-like protein LLJ08_RS19605 PF13247 4Fe-4S dicluster domain LLJ08_RS19605 PF09163 Formate dehydrogenase N, transmembrane LLJ08_RS19610 PF01292 Prokaryotic cytochrome b561 LLJ08_RS19615 PF04216 Protein involved in formate dehydrogenase formation LLJ08_RS19620 PF12390 Selenocysteine synthase N terminal LLJ08_RS19620 PF03841 L-seryl-tRNA selenium transferase LLJ08_RS19625 PF09107 Elongation factor SelB, winged helix LLJ08_RS19625 PF00009 Elongation factor Tu GTP binding domain LLJ08_RS19625 PF09106 Elongation factor SelB, winged helix LLJ08_RS19625 PF03144 Elongation factor Tu domain 2 LLJ08_RS19635 PF02899 Phage integrase, N-terminal SAM-like domain LLJ08_RS19635 PF00589 Phage integrase family LLJ08_RS19690 PF01597 Glycine cleavage H-protein LLJ08_RS19705 PF00582 Universal stress protein family LLJ08_RS19710 PF01740 STAS domain LLJ08_RS19710 PF00916 Sulfate permease family LLJ08_RS19715 PF11871 Domain of unknown function (DUF3391) LLJ08_RS19715 PF01966 HD domain LLJ08_RS19720 PF02743 Cache domain LLJ08_RS19720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19720 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS19725 PF00072 Response regulator receiver domain LLJ08_RS19725 PF00158 Sigma-54 interaction domain LLJ08_RS19725 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS19730 PF08281 Sigma-70, region 4 LLJ08_RS19730 PF04542 Sigma-70 region 2 LLJ08_RS19735 PF03795 YCII-related domain LLJ08_RS19745 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS19745 PF00593 TonB dependent receptor LLJ08_RS19760 PF13426 PAS domain LLJ08_RS19760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS19760 PF00072 Response regulator receiver domain LLJ08_RS19765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS19765 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS19765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS19770 PF10282 Lactonase, 7-bladed beta-propeller LLJ08_RS19785 PF00460 Flagella basal body rod protein LLJ08_RS19785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS19790 PF01464 Transglycosylase SLT domain LLJ08_RS19790 PF14718 Soluble lytic murein transglycosylase L domain LLJ08_RS19795 PF02119 Flagellar P-ring protein LLJ08_RS19800 PF02107 Flagellar L-ring protein LLJ08_RS19805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS19805 PF00460 Flagella basal body rod protein LLJ08_RS19810 PF00460 Flagella basal body rod protein LLJ08_RS19810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS19815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS19815 PF00460 Flagella basal body rod protein LLJ08_RS19815 PF07559 Flagellar basal body protein FlaE LLJ08_RS19820 PF13861 FlgD Tudor-like domain LLJ08_RS19820 PF03963 Flagellar hook capping protein - N-terminal region LLJ08_RS19820 PF13860 FlgD Ig-like domain LLJ08_RS19825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LLJ08_RS19825 PF00460 Flagella basal body rod protein LLJ08_RS19830 PF00460 Flagella basal body rod protein LLJ08_RS19840 PF00700 Bacterial flagellin C-terminal helical region LLJ08_RS19840 PF00669 Bacterial flagellin N-terminal helical region LLJ08_RS19855 PF13677 Membrane MotB of proton-channel complex MotA/MotB LLJ08_RS19855 PF00691 OmpA family LLJ08_RS19860 PF01618 MotA/TolQ/ExbB proton channel family LLJ08_RS19865 PF04545 Sigma-70, region 4 LLJ08_RS19865 PF04542 Sigma-70 region 2 LLJ08_RS19890 PF07196 Flagellin hook IN motif LLJ08_RS19890 PF07195 Flagellar hook-associated protein 2 C-terminus LLJ08_RS19890 PF02465 Flagellar hook-associated protein 2 N-terminus LLJ08_RS19910 PF18269 T3SS EscN ATPase C-terminal domain LLJ08_RS19910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLJ08_RS19920 PF01706 FliG C-terminal domain LLJ08_RS19920 PF14841 FliG middle domain LLJ08_RS19920 PF14842 FliG N-terminal domain LLJ08_RS19925 PF08345 Flagellar M-ring protein C-terminal LLJ08_RS19925 PF01514 Secretory protein of YscJ/FliF family LLJ08_RS19930 PF02049 Flagellar hook-basal body complex protein FliE LLJ08_RS19935 PF00072 Response regulator receiver domain LLJ08_RS19935 PF00158 Sigma-54 interaction domain LLJ08_RS19935 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS19945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LLJ08_RS19950 PF00813 FliP family LLJ08_RS19955 PF01313 Bacterial export proteins, family 3 LLJ08_RS19960 PF01311 Bacterial export proteins, family 1 LLJ08_RS19965 PF01312 FlhB HrpN YscU SpaS Family LLJ08_RS19970 PF00771 FHIPEP family LLJ08_RS20005 PF00107 Zinc-binding dehydrogenase LLJ08_RS20005 PF13823 Alcohol dehydrogenase GroES-associated LLJ08_RS20005 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS20015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LLJ08_RS20015 PF03466 LysR substrate binding domain LLJ08_RS20020 PF00270 DEAD/DEAH box helicase LLJ08_RS20020 PF17191 RecG wedge domain LLJ08_RS20020 PF00271 Helicase conserved C-terminal domain LLJ08_RS20035 PF05134 Type II secretion system (T2SS), protein L LLJ08_RS20035 PF12693 GspL periplasmic domain LLJ08_RS20040 PF03934 Type II secretion system (T2SS), protein K LLJ08_RS20045 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS20045 PF11612 Type II secretion system (T2SS), protein J LLJ08_RS20050 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS20050 PF02501 Type II secretion system (T2SS), protein I LLJ08_RS20055 PF12019 Type II transport protein GspH LLJ08_RS20055 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS20060 PF07963 Prokaryotic N-terminal methylation motif LLJ08_RS20060 PF08334 Type II secretion system (T2SS), protein G LLJ08_RS20065 PF00482 Type II secretion system (T2SS), protein F LLJ08_RS20070 PF00437 Type II/IV secretion system protein LLJ08_RS20080 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LLJ08_RS20080 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LLJ08_RS20085 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LLJ08_RS20090 PF02233 NAD(P) transhydrogenase beta subunit LLJ08_RS20095 PF02525 Flavodoxin-like fold LLJ08_RS20100 PF13593 SBF-like CPA transporter family (DUF4137) LLJ08_RS20105 PF02311 AraC-like ligand binding domain LLJ08_RS20105 PF12833 Helix-turn-helix domain LLJ08_RS20150 PF04717 Type VI secretion system, phage-baseplate injector LLJ08_RS20155 PF05638 Type VI secretion system effector, Hcp LLJ08_RS20160 PF00476 DNA polymerase family A LLJ08_RS20160 PF01612 3'-5' exonuclease LLJ08_RS20160 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LLJ08_RS20160 PF01367 5'-3' exonuclease, C-terminal SAM fold LLJ08_RS20170 PF01636 Phosphotransferase enzyme family LLJ08_RS20175 PF01066 CDP-alcohol phosphatidyltransferase LLJ08_RS20190 PF11892 Domain of unknown function (DUF3412) LLJ08_RS20190 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LLJ08_RS20190 PF03641 Possible lysine decarboxylase LLJ08_RS20205 PF08471 Class II vitamin B12-dependent ribonucleotide reductase LLJ08_RS20205 PF02867 Ribonucleotide reductase, barrel domain LLJ08_RS20210 PF00471 Ribosomal protein L33 LLJ08_RS20215 PF00830 Ribosomal L28 family LLJ08_RS20220 PF00501 AMP-binding enzyme LLJ08_RS20220 PF13193 AMP-binding enzyme C-terminal domain LLJ08_RS20225 PF09339 IclR helix-turn-helix domain LLJ08_RS20240 PF07690 Major Facilitator Superfamily LLJ08_RS20260 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS20260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS20260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS20265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LLJ08_RS20265 PF02770 Acyl-CoA dehydrogenase, middle domain LLJ08_RS20265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LLJ08_RS20270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LLJ08_RS20270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LLJ08_RS20270 PF00378 Enoyl-CoA hydratase/isomerase LLJ08_RS20275 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS20275 PF00072 Response regulator receiver domain LLJ08_RS20280 PF00171 Aldehyde dehydrogenase family LLJ08_RS20285 PF01322 Cytochrome C' LLJ08_RS20290 PF01292 Prokaryotic cytochrome b561 LLJ08_RS20315 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LLJ08_RS20325 PF06761 Intracellular multiplication and human macrophage-killing LLJ08_RS20325 PF14331 ImcF-related N-terminal domain LLJ08_RS20325 PF06744 Type VI secretion protein IcmF C-terminal LLJ08_RS20335 PF00069 Protein kinase domain LLJ08_RS20340 PF04717 Type VI secretion system, phage-baseplate injector LLJ08_RS20345 PF00182 Chitinase class I LLJ08_RS20365 PF00199 Catalase LLJ08_RS20370 PF02405 Permease MlaE LLJ08_RS20375 PF00005 ABC transporter LLJ08_RS20390 PF13533 Biotin-lipoyl like LLJ08_RS20395 PF00005 ABC transporter LLJ08_RS20405 PF16363 GDP-mannose 4,6 dehydratase LLJ08_RS20410 PF00483 Nucleotidyl transferase LLJ08_RS20415 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LLJ08_RS20420 PF04321 RmlD substrate binding domain LLJ08_RS20425 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS20425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS20425 PF02743 Cache domain LLJ08_RS20430 PF00158 Sigma-54 interaction domain LLJ08_RS20430 PF00072 Response regulator receiver domain LLJ08_RS20430 PF02954 Bacterial regulatory protein, Fis family LLJ08_RS20435 PF03480 Bacterial extracellular solute-binding protein, family 7 LLJ08_RS20440 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LLJ08_RS20445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LLJ08_RS20470 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS20470 PF00593 TonB dependent receptor LLJ08_RS20485 PF00005 ABC transporter LLJ08_RS20495 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS20500 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS20505 PF00005 ABC transporter LLJ08_RS20505 PF08402 TOBE domain LLJ08_RS20510 PF13416 Bacterial extracellular solute-binding protein LLJ08_RS20515 PF13416 Bacterial extracellular solute-binding protein LLJ08_RS20520 PF00202 Aminotransferase class-III LLJ08_RS20525 PF00120 Glutamine synthetase, catalytic domain LLJ08_RS20530 PF07722 Peptidase C26 LLJ08_RS20535 PF00120 Glutamine synthetase, catalytic domain LLJ08_RS20545 PF00795 Carbon-nitrogen hydrolase LLJ08_RS20550 PF04371 Porphyromonas-type peptidyl-arginine deiminase LLJ08_RS20570 PF07694 5TMR of 5TMR-LYT LLJ08_RS20570 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS20580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS20580 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS20580 PF00989 PAS fold LLJ08_RS20585 PF00072 Response regulator receiver domain LLJ08_RS20585 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS20590 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS20590 PF00989 PAS fold LLJ08_RS20590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS20590 PF16736 Single Cache-like LLJ08_RS20595 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS20595 PF00072 Response regulator receiver domain LLJ08_RS20600 PF00990 Diguanylate cyclase, GGDEF domain LLJ08_RS20600 PF00072 Response regulator receiver domain LLJ08_RS20605 PF01627 Hpt domain LLJ08_RS20605 PF00672 HAMP domain LLJ08_RS20605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS20605 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS20605 PF00072 Response regulator receiver domain LLJ08_RS20605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LLJ08_RS20610 PF00486 Transcriptional regulatory protein, C terminal LLJ08_RS20610 PF00072 Response regulator receiver domain LLJ08_RS20625 PF00535 Glycosyl transferase family 2 LLJ08_RS20630 PF00171 Aldehyde dehydrogenase family LLJ08_RS20635 PF00202 Aminotransferase class-III LLJ08_RS20640 PF01297 Zinc-uptake complex component A periplasmic LLJ08_RS20645 PF01475 Ferric uptake regulator family LLJ08_RS20650 PF00005 ABC transporter LLJ08_RS20655 PF00950 ABC 3 transport family LLJ08_RS20660 PF01863 Protein of unknown function DUF45 LLJ08_RS20665 PF00939 Sodium:sulfate symporter transmembrane region LLJ08_RS20670 PF18011 C-terminal domain found in long catalases LLJ08_RS20670 PF06628 Catalase-related immune-responsive LLJ08_RS20670 PF00199 Catalase LLJ08_RS20675 PF09383 NIL domain LLJ08_RS20675 PF00005 ABC transporter LLJ08_RS20680 PF00528 Binding-protein-dependent transport system inner membrane component LLJ08_RS20685 PF03180 NLPA lipoprotein LLJ08_RS20690 PF08240 Alcohol dehydrogenase GroES-like domain LLJ08_RS20700 PF00132 Bacterial transferase hexapeptide (six repeats) LLJ08_RS20705 PF01432 Peptidase family M3 LLJ08_RS20720 PF01757 Acyltransferase family LLJ08_RS20725 PF04055 Radical SAM superfamily LLJ08_RS20730 PF00484 Carbonic anhydrase LLJ08_RS20735 PF01740 STAS domain LLJ08_RS20735 PF00916 Sulfate permease family LLJ08_RS20745 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LLJ08_RS20745 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LLJ08_RS20750 PF00115 Cytochrome C and Quinol oxidase polypeptide I LLJ08_RS20755 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LLJ08_RS20760 PF00510 Cytochrome c oxidase subunit III LLJ08_RS20780 PF02628 Cytochrome oxidase assembly protein LLJ08_RS20785 PF01040 UbiA prenyltransferase family LLJ08_RS20790 PF02630 SCO1/SenC LLJ08_RS20800 PF00593 TonB dependent receptor LLJ08_RS20800 PF07715 TonB-dependent Receptor Plug Domain LLJ08_RS20810 PF08281 Sigma-70, region 4 LLJ08_RS20810 PF04542 Sigma-70 region 2 LLJ08_RS20815 PF12276 Protein of unknown function (DUF3617) LLJ08_RS20825 PF02492 CobW/HypB/UreG, nucleotide-binding domain LLJ08_RS20825 PF07683 Cobalamin synthesis protein cobW C-terminal domain LLJ08_RS20840 PF00512 His Kinase A (phospho-acceptor) domain LLJ08_RS20840 PF08446 PAS fold LLJ08_RS20840 PF00360 Phytochrome region LLJ08_RS20840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS20840 PF01590 GAF domain LLJ08_RS20845 PF00072 Response regulator receiver domain LLJ08_RS20850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LLJ08_RS20850 PF13426 PAS domain LLJ08_RS20850 PF00072 Response regulator receiver domain LLJ08_RS20855 PF01126 Heme oxygenase LLJ08_RS20860 PF01380 SIS domain LLJ08_RS20865 PF00455 DeoR C terminal sensor domain LLJ08_RS20865 PF08220 DeoR-like helix-turn-helix domain LLJ08_RS20870 PF00132 Bacterial transferase hexapeptide (six repeats) LLJ08_RS20870 PF14602 Hexapeptide repeat of succinyl-transferase LLJ08_RS20870 PF12804 MobA-like NTP transferase domain LLJ08_RS20875 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LLJ08_RS20875 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LLJ08_RS20880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLJ08_RS20880 PF02874 ATP synthase alpha/beta family, beta-barrel domain LLJ08_RS20885 PF00231 ATP synthase LLJ08_RS20890 PF02874 ATP synthase alpha/beta family, beta-barrel domain LLJ08_RS20890 PF00306 ATP synthase alpha/beta chain, C terminal domain LLJ08_RS20890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LLJ08_RS20895 PF00213 ATP synthase delta (OSCP) subunit LLJ08_RS20900 PF00430 ATP synthase B/B' CF(0) LLJ08_RS20905 PF00137 ATP synthase subunit C LLJ08_RS20910 PF00119 ATP synthase A chain LLJ08_RS20915 PF03899 ATP synthase I chain LLJ08_RS20920 PF17762 HTH domain found in ParB protein LLJ08_RS20920 PF02195 ParB-like nuclease domain LLJ08_RS20925 PF13614 AAA domain LLJ08_RS20930 PF02527 rRNA small subunit methyltransferase G LLJ08_RS20935 PF01134 Glucose inhibited division protein A LLJ08_RS20935 PF13932 GidA associated domain LLJ08_RS20940 PF12631 MnmE helical domain LLJ08_RS20940 PF01926 50S ribosome-binding GTPase LLJ08_RS20940 PF10396 GTP-binding protein TrmE N-terminus LLJ08_RS20945 PF02096 60Kd inner membrane protein LLJ08_RS20945 PF14849 YidC periplasmic domain LLJ08_RS20950 PF01809 Putative membrane protein insertion efficiency factor LLJ08_RS20955 PF00825 Ribonuclease P LLJ08_RS20960 PF00468 Ribosomal protein L34 LLJ08_RS20985 PF00691 OmpA family LLJ08_RS20985 PF05736 OprF membrane domain LLJ08_RS20995 PF07690 Major Facilitator Superfamily LLJ08_RS21000 PF07690 Major Facilitator Superfamily