locus-tag	class	description
PSJM300_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
PSJM300_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
PSJM300_RS00030	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
PSJM300_RS00115	COG2856	Zn peptidase
PSJM300_RS00130	COG3706	GGDEF domain
PSJM300_RS00145	COG0751	glycine-tRNA ligase activity
PSJM300_RS00150	COG0752	glycyl-tRNA synthetase alpha subunit
PSJM300_RS00155	COG2818	Glycosylase
PSJM300_RS00175	COG1126	abc transporter atp-binding protein
PSJM300_RS00180	COG0765	amino acid transport
PSJM300_RS00185	COG0765	amino acid transport
PSJM300_RS00190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PSJM300_RS00195	COG0569	domain protein
PSJM300_RS00200	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
PSJM300_RS00205	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
PSJM300_RS00210	COG0242	peptide deformylase activity
PSJM300_RS00215	COG1652	LysM domain
PSJM300_RS00220	COG0758	DNA mediated transformation
PSJM300_RS00225	COG0009	L-threonylcarbamoyladenylate synthase
PSJM300_RS00235	COG0408	coproporphyrinogen oxidase activity
PSJM300_RS00240	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
PSJM300_RS00255	COG1686	Belongs to the peptidase S11 family
PSJM300_RS00275	COG1132	(ABC) transporter
PSJM300_RS00300	COG0625	glutathione transferase activity
PSJM300_RS00305	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
PSJM300_RS00325	COG1132	(ABC) transporter
PSJM300_RS00330	COG4249	Peptidase C14 caspase catalytic subunit p20
PSJM300_RS00340	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PSJM300_RS00375	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
PSJM300_RS00380	COG2207	Transcriptional regulator
PSJM300_RS00395	COG0339	signal peptide processing
PSJM300_RS00425	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
PSJM300_RS00430	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
PSJM300_RS00435	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
PSJM300_RS00465	COG0109	protoheme IX farnesyltransferase activity
PSJM300_RS00480	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
PSJM300_RS00495	COG4771	TonB-dependent receptor
PSJM300_RS00545	COG1091	dTDP-4-dehydrorhamnose reductase activity
PSJM300_RS00565	COG0842	Transport permease protein
PSJM300_RS00570	COG1129	ABC transporter
PSJM300_RS00570	COG0842	Transport permease protein
PSJM300_RS00575	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PSJM300_RS00585	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
PSJM300_RS00585	COG3218	ABC-type transport auxiliary lipoprotein component
PSJM300_RS00590	COG1127	ABC transporter
PSJM300_RS00595	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
PSJM300_RS00610	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
PSJM300_RS00610	COG0506	proline dehydrogenase activity
PSJM300_RS00610	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
PSJM300_RS00635	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
PSJM300_RS00640	COG1611	Belongs to the LOG family
PSJM300_RS00645	COG4589	Belongs to the CDS family
PSJM300_RS00655	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
PSJM300_RS00660	COG4991	sh3 domain protein
PSJM300_RS00810	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PSJM300_RS00815	COG0583	DNA-binding transcription factor activity
PSJM300_RS00820	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PSJM300_RS00865	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
PSJM300_RS00875	COG1987	bacterial-type flagellum assembly
PSJM300_RS00910	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
PSJM300_RS00940	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
PSJM300_RS00965	COG1191	sigma factor activity
PSJM300_RS00970	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
PSJM300_RS00990	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
PSJM300_RS01000	COG1815	bacterial-type flagellum-dependent cell motility
PSJM300_RS01005	COG1558	bacterial-type flagellum-dependent cell motility
PSJM300_RS01010	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
PSJM300_RS01020	COG4787	bacterial-type flagellum-dependent cell motility
PSJM300_RS01025	COG4786	Flagellar basal body rod
PSJM300_RS01035	COG1706	bacterial-type flagellum-dependent cell motility
PSJM300_RS01040	COG0741	lytic transglycosylase activity
PSJM300_RS01045	COG4786	Flagellar basal body rod
PSJM300_RS01045	COG1256	bacterial-type flagellum assembly
PSJM300_RS01060	COG2706	6-phosphogluconolactonase activity
PSJM300_RS01085	COG3795	YCII-related domain
PSJM300_RS01090	COG4941	Belongs to the sigma-70 factor family
PSJM300_RS01095	COG2204	response regulator
PSJM300_RS01105	COG0659	secondary active sulfate transmembrane transporter activity
PSJM300_RS01110	COG0589	response to stress
PSJM300_RS01115	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
PSJM300_RS01130	COG3276	selenocysteine insertion sequence binding
PSJM300_RS01135	COG1921	L-seryl-tRNASec selenium transferase activity
PSJM300_RS01140	COG3058	Necessary for formate dehydrogenase activity
PSJM300_RS01145	COG2864	formate dehydrogenase
PSJM300_RS01150	COG0437	4 iron, 4 sulfur cluster binding
PSJM300_RS01175	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
PSJM300_RS01180	COG0210	DNA helicase
PSJM300_RS01200	COG3675	Pfam Lipase (class 3)
PSJM300_RS01205	COG0826	peptidase U32
PSJM300_RS01215	COG4774	siderophore transport
PSJM300_RS01225	COG0527	aspartate kinase activity
PSJM300_RS01230	COG5285	phytanoyl-CoA dioxygenase
PSJM300_RS01235	COG1917	Cupin 2, conserved barrel domain protein
PSJM300_RS01240	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
PSJM300_RS01250	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
PSJM300_RS01265	COG0583	DNA-binding transcription factor activity
PSJM300_RS01270	COG0439	Biotin carboxylase
PSJM300_RS01275	COG0511	ligase activity, forming carbon-carbon bonds
PSJM300_RS01275	COG5016	pyruvate
PSJM300_RS01285	COG0252	asparaginase activity
PSJM300_RS01290	COG1115	amino acid carrier protein
PSJM300_RS01310	COG1027	Aspartate ammonia-lyase
PSJM300_RS01315	COG0583	DNA-binding transcription factor activity
PSJM300_RS01345	COG0676	glucose-6-phosphate 1-epimerase activity
PSJM300_RS01355	COG4215	(ABC) transporter
PSJM300_RS01360	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PSJM300_RS01370	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
PSJM300_RS01380	COG2233	PERMEase
PSJM300_RS01385	COG1422	Protein of unknown function (DUF1090)
PSJM300_RS01390	COG2233	PERMEase
PSJM300_RS01395	COG0129	dihydroxy-acid dehydratase activity
PSJM300_RS01400	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PSJM300_RS01405	COG0693	protein deglycase activity
PSJM300_RS01415	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
PSJM300_RS01430	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
PSJM300_RS01440	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
PSJM300_RS01465	COG0742	ribosomal rna small subunit methyltransferase
PSJM300_RS01470	COG0612	Peptidase, M16
PSJM300_RS01475	COG0612	Peptidase, M16
PSJM300_RS01480	COG0552	protein localization to endoplasmic reticulum
PSJM300_RS01485	COG2884	Cell division ATP-binding protein ftsE
PSJM300_RS01490	COG2177	Part of the ABC transporter FtsEX involved in
PSJM300_RS01510	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PSJM300_RS01515	COG2363	Small membrane protein
PSJM300_RS01525	COG2022	thiamine diphosphate biosynthetic process
PSJM300_RS01530	COG0220	tRNA (guanine-N7-)-methyltransferase activity
PSJM300_RS01545	COG0635	Involved in the biosynthesis of porphyrin-containing compound
PSJM300_RS01550	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PSJM300_RS01560	COG2813	Specifically methylates the guanine in position
PSJM300_RS01560	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PSJM300_RS01565	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PSJM300_RS01570	COG1160	GTP binding
PSJM300_RS01620	COG0540	Belongs to the ATCase OTCase family
PSJM300_RS01625	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
PSJM300_RS01635	COG1678	Uncharacterized ACR, COG1678
PSJM300_RS01675	COG0784	Response regulator, receiver
PSJM300_RS01675	COG2198	Histidine kinase
PSJM300_RS01675	COG0643	Histidine kinase
PSJM300_RS01690	COG1385	rRNA (uridine-N3-)-methyltransferase activity
PSJM300_RS01700	COG3038	cytochrome b561
PSJM300_RS01705	COG2353	YceI-like domain
PSJM300_RS01725	COG0513	Belongs to the DEAD box helicase family
PSJM300_RS01730	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
PSJM300_RS01735	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
PSJM300_RS01755	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PSJM300_RS01760	COG1017	nitric oxide dioxygenase activity
PSJM300_RS01760	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
PSJM300_RS01765	COG1131	(ABC) transporter
PSJM300_RS01770	COG0842	Transport permease protein
PSJM300_RS01785	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
PSJM300_RS01800	COG2175	clavaminate synthase activity
PSJM300_RS01805	COG0583	DNA-binding transcription factor activity
PSJM300_RS01810	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
PSJM300_RS01815	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
PSJM300_RS01820	COG0126	phosphoglycerate kinase activity
PSJM300_RS01835	COG0191	fructose-bisphosphate aldolase activity
PSJM300_RS01875	COG2081	HI0933 family
PSJM300_RS01895	COG1289	transmembrane transporter activity
PSJM300_RS01900	COG0513	Belongs to the DEAD box helicase family
PSJM300_RS01915	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PSJM300_RS01970	COG0330	HflC and HflK could
PSJM300_RS02000	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
PSJM300_RS02010	COG0784	Response regulator, receiver
PSJM300_RS02010	COG2205	protein histidine kinase activity
PSJM300_RS02015	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
PSJM300_RS02020	COG3264	Mechanosensitive ion channel
PSJM300_RS02020	COG1196	nuclear chromosome segregation
PSJM300_RS02025	COG3263	regulation of cellular component size
PSJM300_RS02030	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS02035	COG1304	FMN binding
PSJM300_RS02045	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
PSJM300_RS02050	COG0815	Transfers the fatty acyl group on membrane lipoproteins
PSJM300_RS02055	COG4535	Mg2 and Co2 transporter CorC
PSJM300_RS02060	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
PSJM300_RS02065	COG1702	phosphate starvation-inducible protein PhoH
PSJM300_RS02070	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PSJM300_RS02085	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
PSJM300_RS02090	COG0352	thiamine-phosphate diphosphorylase activity
PSJM300_RS02095	COG0352	thiamine-phosphate diphosphorylase activity
PSJM300_RS02095	COG0351	phosphomethylpyrimidine kinase
PSJM300_RS02100	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS02115	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
PSJM300_RS02125	COG0859	PFAM glycosyl transferase family 9
PSJM300_RS02135	COG0438	transferase activity, transferring glycosyl groups
PSJM300_RS02160	COG2192	nodulation
PSJM300_RS02165	COG1215	transferase activity, transferring glycosyl groups
PSJM300_RS02170	COG0438	transferase activity, transferring glycosyl groups
PSJM300_RS02175	COG1215	transferase activity, transferring glycosyl groups
PSJM300_RS02185	COG1132	(ABC) transporter
PSJM300_RS02190	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
PSJM300_RS02190	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
PSJM300_RS02200	COG0667	Aldo Keto reductase
PSJM300_RS02210	COG1519	Transferase
PSJM300_RS02225	COG1538	Outer membrane efflux protein
PSJM300_RS02230	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
PSJM300_RS02240	COG0494	nUDIX hydrolase
PSJM300_RS02250	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
PSJM300_RS02255	COG0708	Exodeoxyribonuclease III
PSJM300_RS02260	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
PSJM300_RS02270	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
PSJM300_RS02280	COG0756	dUTP diphosphatase activity
PSJM300_RS02285	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
PSJM300_RS02290	COG2003	Belongs to the UPF0758 family
PSJM300_RS02300	COG0840	transmembrane signaling receptor activity
PSJM300_RS02310	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PSJM300_RS02315	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PSJM300_RS02325	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PSJM300_RS02350	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
PSJM300_RS02360	COG0366	Alpha amylase catalytic
PSJM300_RS02375	COG1454	alcohol dehydrogenase
PSJM300_RS02385	COG1414	Transcriptional regulator
PSJM300_RS02400	COG0606	chelatase, subunit chli
PSJM300_RS02405	COG2960	long-chain fatty acid transporting porin activity
PSJM300_RS02410	COG0347	Belongs to the P(II) protein family
PSJM300_RS02415	COG0004	ammonium transporteR
PSJM300_RS02420	COG0432	Pfam Uncharacterised protein family UPF0047
PSJM300_RS02430	COG1011	Hydrolase
PSJM300_RS02435	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
PSJM300_RS02445	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
PSJM300_RS02460	COG1965	Belongs to the frataxin family
PSJM300_RS02465	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
PSJM300_RS02495	COG0165	Argininosuccinate lyase
PSJM300_RS02505	COG3275	phosphorelay sensor kinase activity
PSJM300_RS02515	COG0181	hydroxymethylbilane synthase activity
PSJM300_RS02535	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
PSJM300_RS02555	COG0488	(ABC) transporter
PSJM300_RS02565	COG0861	Integral membrane protein TerC family
PSJM300_RS02575	COG1671	Belongs to the UPF0178 family
PSJM300_RS02580	COG2050	protein possibly involved in aromatic compounds catabolism
PSJM300_RS02585	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
PSJM300_RS02595	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
PSJM300_RS02625	COG0248	Ppx GppA phosphatase
PSJM300_RS02640	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
PSJM300_RS02655	COG0018	arginyl-trna synthetase
PSJM300_RS02660	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
PSJM300_RS02665	COG0254	rRNA binding
PSJM300_RS02675	COG0281	malic enzyme
PSJM300_RS02710	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
PSJM300_RS02715	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
PSJM300_RS02725	COG0069	glutamate synthase activity
PSJM300_RS02725	COG0070	glutamate synthase
PSJM300_RS02725	COG0067	glutamate synthase
PSJM300_RS02730	COG0493	'glutamate synthase
PSJM300_RS02735	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
PSJM300_RS02750	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PSJM300_RS02755	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS02765	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PSJM300_RS02795	COG2986	histidine ammonia-lyase
PSJM300_RS02820	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PSJM300_RS02825	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PSJM300_RS02840	COG3118	belongs to the thioredoxin family
PSJM300_RS02845	COG2873	o-acetylhomoserine
PSJM300_RS02850	COG0471	metal ion transport
PSJM300_RS02850	COG3273	potassium ion transport
PSJM300_RS02875	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
PSJM300_RS02885	COG0828	Belongs to the bacterial ribosomal protein bS21 family
PSJM300_RS02890	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
PSJM300_RS02895	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
PSJM300_RS02900	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PSJM300_RS02915	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
PSJM300_RS02970	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
PSJM300_RS02975	COG0537	adenosine 5'-monophosphoramidase activity
PSJM300_RS02980	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PSJM300_RS02995	COG1981	membrane
PSJM300_RS03000	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
PSJM300_RS03005	COG0316	Belongs to the HesB IscA family
PSJM300_RS03010	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
PSJM300_RS03015	COG0739	heme binding
PSJM300_RS03020	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
PSJM300_RS03050	COG2204	response regulator
PSJM300_RS03100	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS03105	COG3901	Regulator of nitric oxide reductase transcription
PSJM300_RS03105	COG0348	domain, Protein
PSJM300_RS03110	COG4263	nitrous-oxide reductase activity
PSJM300_RS03125	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
PSJM300_RS03145	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS03150	COG0840	transmembrane signaling receptor activity
PSJM300_RS03155	COG3278	Belongs to the heme-copper respiratory oxidase family
PSJM300_RS03160	COG2239	Acts as a magnesium transporter
PSJM300_RS03175	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PSJM300_RS03175	COG1648	precorrin-2 dehydrogenase activity
PSJM300_RS03180	COG0535	radical SAM domain protein
PSJM300_RS03215	COG3391	amine dehydrogenase activity
PSJM300_RS03220	COG2010	Cytochrome c
PSJM300_RS03240	COG2010	Cytochrome c
PSJM300_RS03245	COG0714	Associated with various cellular activities
PSJM300_RS03250	COG1845	cytochrome c oxidase, subunit III
PSJM300_RS03260	COG2010	Cytochrome c
PSJM300_RS03265	COG3256	nitric oxide reductase
PSJM300_RS03280	COG3385	transposase activity
PSJM300_RS03290	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PSJM300_RS03300	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
PSJM300_RS03305	COG3604	Transcriptional regulator
PSJM300_RS03315	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
PSJM300_RS03320	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PSJM300_RS03325	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
PSJM300_RS03335	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
PSJM300_RS03350	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
PSJM300_RS03355	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
PSJM300_RS03360	COG0546	phosphoglycolate phosphatase activity
PSJM300_RS03370	COG0512	Glutamine amidotransferase of anthranilate synthase
PSJM300_RS03375	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PSJM300_RS03380	COG0134	indole-3-glycerol-phosphate synthase activity
PSJM300_RS03390	COG1765	OsmC-like protein
PSJM300_RS03415	COG1252	NADH dehydrogenase
PSJM300_RS03445	COG0180	Tryptophanyl-tRNA synthetase
PSJM300_RS03450	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
PSJM300_RS03455	COG4977	sequence-specific DNA binding
PSJM300_RS03460	COG1515	deoxyribonuclease V activity
PSJM300_RS03465	COG3023	N-Acetylmuramoyl-L-alanine amidase
PSJM300_RS03480	COG0084	hydrolase, TatD family'
PSJM300_RS03490	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PSJM300_RS03490	COG2169	Transcriptional regulator
PSJM300_RS03500	COG1538	Outer membrane efflux protein
PSJM300_RS03505	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PSJM300_RS03510	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PSJM300_RS03525	COG0840	transmembrane signaling receptor activity
PSJM300_RS03530	COG1309	transcriptional regulator
PSJM300_RS03535	COG2814	Major facilitator Superfamily
PSJM300_RS03540	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
PSJM300_RS03600	COG0534	Mate efflux family protein
PSJM300_RS03625	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
PSJM300_RS03635	COG4993	Dehydrogenase
PSJM300_RS03645	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
PSJM300_RS03650	COG0019	diaminopimelate decarboxylase activity
PSJM300_RS03655	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
PSJM300_RS03675	COG4771	TonB-dependent receptor
PSJM300_RS03690	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
PSJM300_RS03700	COG0739	heme binding
PSJM300_RS03715	COG0530	calcium, potassium:sodium antiporter activity
PSJM300_RS03725	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
PSJM300_RS03730	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
PSJM300_RS03745	COG1077	Cell shape determining protein MreB Mrl
PSJM300_RS03750	COG1792	Involved in formation and maintenance of cell shape
PSJM300_RS03765	COG0424	maF-like protein
PSJM300_RS03770	COG1530	ribonuclease E activity
PSJM300_RS03780	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
PSJM300_RS03785	COG0312	modulator of DNA gyrase
PSJM300_RS03795	COG0312	modulator of DNA gyrase
PSJM300_RS03805	COG1660	Displays ATPase and GTPase activities
PSJM300_RS03820	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
PSJM300_RS03825	COG1137	ATPase activity
PSJM300_RS03840	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
PSJM300_RS03850	COG1127	ABC transporter
PSJM300_RS03855	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
PSJM300_RS03880	COG5007	Belongs to the BolA IbaG family
PSJM300_RS03885	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
PSJM300_RS03890	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
PSJM300_RS03900	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
PSJM300_RS03905	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PSJM300_RS03915	COG0175	sulfate reduction
PSJM300_RS03965	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
PSJM300_RS03970	COG0237	dephospho-CoA kinase activity
PSJM300_RS04005	COG0631	protein serine/threonine phosphatase activity
PSJM300_RS04030	COG0667	Aldo Keto reductase
PSJM300_RS04035	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
PSJM300_RS04040	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
PSJM300_RS04045	COG0723	plastoquinol--plastocyanin reductase activity
PSJM300_RS04050	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
PSJM300_RS04055	COG2857	Cytochrome c1
PSJM300_RS04060	COG0625	glutathione transferase activity
PSJM300_RS04065	COG2969	positive regulation of protein catabolic process
PSJM300_RS04070	COG2823	Periplasmic or secreted lipoprotein
PSJM300_RS04075	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
PSJM300_RS04080	COG0792	nuclease activity
PSJM300_RS04100	COG0275	rRNA processing
PSJM300_RS04115	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PSJM300_RS04120	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
PSJM300_RS04125	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
PSJM300_RS04130	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
PSJM300_RS04135	COG0772	Belongs to the SEDS family
PSJM300_RS04140	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
PSJM300_RS04145	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PSJM300_RS04150	COG1181	Belongs to the D-alanine--D-alanine ligase family
PSJM300_RS04165	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
PSJM300_RS04170	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
PSJM300_RS04185	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PSJM300_RS04195	COG0679	Auxin Efflux Carrier
PSJM300_RS04210	COG2124	cytochrome p450
PSJM300_RS04215	COG0784	Response regulator, receiver
PSJM300_RS04215	COG2205	protein histidine kinase activity
PSJM300_RS04215	COG5002	protein histidine kinase activity
PSJM300_RS04230	COG0138	bifunctional purine biosynthesis protein purh
PSJM300_RS04265	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
PSJM300_RS04300	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
PSJM300_RS04320	COG0028	Belongs to the TPP enzyme family
PSJM300_RS04330	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
PSJM300_RS04335	COG1183	phosphatidylcholine synthase activity
PSJM300_RS04345	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
PSJM300_RS04380	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PSJM300_RS04385	COG0693	protein deglycase activity
PSJM300_RS04390	COG4628	conserved protein (DUF2132)
PSJM300_RS04405	COG0469	pyruvate kinase activity
PSJM300_RS04430	COG0714	Associated with various cellular activities
PSJM300_RS04455	COG2925	Exonuclease
PSJM300_RS04465	COG0788	formyltetrahydrofolate deformylase activity
PSJM300_RS04475	COG0433	COG0433 Predicted ATPase
PSJM300_RS04480	COG3039	Transposase
PSJM300_RS04495	COG3022	response to hydroperoxide
PSJM300_RS04500	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
PSJM300_RS04505	COG0315	cyclic pyranopterin monophosphate synthase activity
PSJM300_RS04510	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
PSJM300_RS04530	COG0400	carboxylic ester hydrolase activity
PSJM300_RS04535	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PSJM300_RS04540	COG4597	amino acid ABC transporter
PSJM300_RS04545	COG0765	amino acid transport
PSJM300_RS04550	COG1126	abc transporter atp-binding protein
PSJM300_RS04555	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
PSJM300_RS04555	COG0047	phosphoribosylformylglycinamidine synthase activity
PSJM300_RS04565	COG3034	peptidoglycan biosynthetic process
PSJM300_RS04585	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
PSJM300_RS04590	COG4536	flavin adenine dinucleotide binding
PSJM300_RS04595	COG4137	Cytochrome C assembly protein
PSJM300_RS04600	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
PSJM300_RS04605	COG0228	four-way junction DNA binding
PSJM300_RS04610	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
PSJM300_RS04615	COG0336	Belongs to the RNA methyltransferase TrmD family
PSJM300_RS04620	COG0335	large ribosomal subunit rRNA binding
PSJM300_RS04625	COG1607	acyl-coa hydrolase
PSJM300_RS04635	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
PSJM300_RS04640	COG3791	Glutathione-dependent formaldehyde-activating
PSJM300_RS04655	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
PSJM300_RS04660	COG0418	dihydroorotase activity
PSJM300_RS04670	COG3008	intermembrane lipid transfer
PSJM300_RS04675	COG2995	paraquat-inducible protein a
PSJM300_RS04680	COG2995	paraquat-inducible protein a
PSJM300_RS04685	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PSJM300_RS04695	COG0137	argininosuccinate synthase activity
PSJM300_RS04700	COG0346	lactoylglutathione lyase activity
PSJM300_RS04710	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
PSJM300_RS04720	COG4659	FMN binding
PSJM300_RS04725	COG4658	electron transport chain
PSJM300_RS04735	COG2878	Part of a membrane complex involved in electron transport
PSJM300_RS04740	COG4657	Part of a membrane complex involved in electron transport
PSJM300_RS04750	COG1024	Enoyl-CoA hydratase
PSJM300_RS04760	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
PSJM300_RS04815	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
PSJM300_RS04820	COG0481	GTPase activity
PSJM300_RS04835	COG0571	ribonuclease III activity
PSJM300_RS04840	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
PSJM300_RS04845	COG1381	Involved in DNA repair and RecF pathway recombination
PSJM300_RS04850	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
PSJM300_RS04860	COG0583	DNA-binding transcription factor activity
PSJM300_RS04870	COG0500	methyltransferase
PSJM300_RS04875	COG2226	methyltransferase
PSJM300_RS04885	COG3385	transposase activity
PSJM300_RS04890	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
PSJM300_RS04900	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PSJM300_RS04915	COG3039	Transposase
PSJM300_RS04935	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PSJM300_RS04935	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
PSJM300_RS04940	COG0489	protein tyrosine kinase activity
PSJM300_RS04945	COG1278	Cold shock
PSJM300_RS04950	COG0717	Belongs to the dCTP deaminase family
PSJM300_RS05005	COG3639	organic phosphonate transmembrane transporter activity
PSJM300_RS05015	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
PSJM300_RS05030	COG2084	Dehydrogenase
PSJM300_RS05035	COG3622	Belongs to the hyi family
PSJM300_RS05040	COG2271	Major facilitator Superfamily
PSJM300_RS05045	COG0443	Heat shock 70 kDa protein
PSJM300_RS05060	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
PSJM300_RS05080	COG2030	dehydratase
PSJM300_RS05085	COG0318	PFAM AMP-dependent synthetase and ligase
PSJM300_RS05090	COG0318	PFAM AMP-dependent synthetase and ligase
PSJM300_RS05100	COG1643	Atp-dependent helicase
PSJM300_RS05135	COG1280	lysine exporter protein (LysE YggA)
PSJM300_RS05140	COG5001	Diguanylate cyclase
PSJM300_RS05140	COG3300	MHYT domain
PSJM300_RS05145	COG1234	tRNA 3'-trailer cleavage
PSJM300_RS05150	COG2814	Major facilitator Superfamily
PSJM300_RS05160	COG2610	gluconate transmembrane transporter activity
PSJM300_RS05170	COG2258	MOSC domain
PSJM300_RS05175	COG0537	adenosine 5'-monophosphoramidase activity
PSJM300_RS05180	COG2733	membrane
PSJM300_RS05210	COG0625	glutathione transferase activity
PSJM300_RS05230	COG3530	Putative quorum-sensing-regulated virulence factor
PSJM300_RS05280	COG0513	Belongs to the DEAD box helicase family
PSJM300_RS05295	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
PSJM300_RS05310	COG1262	PFAM Formylglycine-generating sulfatase enzyme
PSJM300_RS05350	COG2133	pyrroloquinoline quinone binding
PSJM300_RS05355	COG4993	Dehydrogenase
PSJM300_RS05360	COG2996	Protein conserved in bacteria
PSJM300_RS05365	COG0250	Participates in transcription elongation, termination and antitermination
PSJM300_RS05380	COG0489	protein tyrosine kinase activity
PSJM300_RS05405	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PSJM300_RS05440	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
PSJM300_RS05465	COG4974	Belongs to the 'phage' integrase family
PSJM300_RS05500	COG3093	addiction module antidote protein HigA
PSJM300_RS05520	COG1295	ribonuclease BN
PSJM300_RS05545	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
PSJM300_RS05550	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
PSJM300_RS05555	COG1546	Belongs to the CinA family
PSJM300_RS05560	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
PSJM300_RS05565	COG2137	regulation of response to DNA damage stimulus
PSJM300_RS05575	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PSJM300_RS05600	COG0656	L-ascorbic acid biosynthetic process
PSJM300_RS05605	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS05610	COG0583	DNA-binding transcription factor activity
PSJM300_RS05615	COG3932	Exopolysaccharide synthesis, ExoD
PSJM300_RS05620	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
PSJM300_RS05630	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
PSJM300_RS05645	COG3081	Nucleoid-associated protein
PSJM300_RS05670	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
PSJM300_RS05675	COG0477	Major facilitator Superfamily
PSJM300_RS05680	COG0471	metal ion transport
PSJM300_RS05680	COG0490	domain, Protein
PSJM300_RS05710	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
PSJM300_RS05715	COG0795	lipopolysaccharide-transporting ATPase activity
PSJM300_RS05720	COG0795	lipopolysaccharide-transporting ATPase activity
PSJM300_RS05725	COG0084	hydrolase, TatD family'
PSJM300_RS05785	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PSJM300_RS05790	COG5001	Diguanylate cyclase
PSJM300_RS05800	COG2130	NADP-dependent
PSJM300_RS05810	COG3135	benzoate transporter
PSJM300_RS05815	COG1677	Flagellar hook-basal body complex protein FliE
PSJM300_RS05850	COG0745	RESPONSE REGULATOR receiver
PSJM300_RS05865	COG1580	Controls the rotational direction of flagella during chemotaxis
PSJM300_RS05890	COG1987	bacterial-type flagellum assembly
PSJM300_RS05905	COG2032	superoxide dismutase activity
PSJM300_RS05935	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
PSJM300_RS05940	COG0784	Response regulator, receiver
PSJM300_RS05940	COG2198	Histidine kinase
PSJM300_RS05940	COG0643	Histidine kinase
PSJM300_RS05945	COG2201	protein-glutamate methylesterase activity
PSJM300_RS05950	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
PSJM300_RS05955	COG1360	Flagellar Motor Protein
PSJM300_RS05960	COG1192	Involved in chromosome partitioning
PSJM300_RS05970	COG0835	chemotaxis
PSJM300_RS05985	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
PSJM300_RS06015	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
PSJM300_RS06065	COG0500	methyltransferase
PSJM300_RS06075	COG0501	Belongs to the peptidase M48B family
PSJM300_RS06085	COG0436	Aminotransferase
PSJM300_RS06090	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PSJM300_RS06095	COG0386	Belongs to the glutathione peroxidase family
PSJM300_RS06105	COG0625	glutathione transferase activity
PSJM300_RS06130	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
PSJM300_RS06140	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
PSJM300_RS06145	COG0471	metal ion transport
PSJM300_RS06150	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
PSJM300_RS06165	COG3005	denitrification pathway
PSJM300_RS06175	COG0243	molybdopterin cofactor binding
PSJM300_RS06185	COG4459	periplasmic nitrate reductase
PSJM300_RS06190	COG2814	Major facilitator Superfamily
PSJM300_RS06195	COG3091	SprT-like family
PSJM300_RS06215	COG0037	tRNA processing
PSJM300_RS06220	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PSJM300_RS06230	COG0791	NLP P60 protein
PSJM300_RS06235	COG0791	NLP P60 protein
PSJM300_RS06250	COG2067	long-chain fatty acid transport protein
PSJM300_RS06265	COG3100	YcgL domain-containing protein
PSJM300_RS06270	COG2983	Belongs to the UPF0260 family
PSJM300_RS06280	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
PSJM300_RS06285	COG0527	aspartate kinase activity
PSJM300_RS06290	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
PSJM300_RS06315	COG2239	Acts as a magnesium transporter
PSJM300_RS06340	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
PSJM300_RS06355	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
PSJM300_RS06360	COG0784	Response regulator, receiver
PSJM300_RS06360	COG0835	chemotaxis
PSJM300_RS06365	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
PSJM300_RS06370	COG1815	bacterial-type flagellum-dependent cell motility
PSJM300_RS06380	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
PSJM300_RS06390	COG4787	bacterial-type flagellum-dependent cell motility
PSJM300_RS06400	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
PSJM300_RS06405	COG1706	bacterial-type flagellum-dependent cell motility
PSJM300_RS06415	COG1256	bacterial-type flagellum assembly
PSJM300_RS06425	COG1555	photosystem II stabilization
PSJM300_RS06455	COG0793	Belongs to the peptidase S41A family
PSJM300_RS06465	COG1362	aminopeptidase activity
PSJM300_RS06475	COG0564	pseudouridine synthase activity
PSJM300_RS06480	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
PSJM300_RS06485	COG2894	cell division
PSJM300_RS06490	COG0850	regulation of cytokinetic process
PSJM300_RS06495	COG1560	Kdo2-lipid A biosynthetic process
PSJM300_RS06500	COG2853	Lipoprotein
PSJM300_RS06510	COG3162	membrane
PSJM300_RS06515	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
PSJM300_RS06535	COG3089	Belongs to the UPF0270 family
PSJM300_RS06540	COG1363	Peptidase, m42
PSJM300_RS06545	COG0189	ligase activity
PSJM300_RS06545	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
PSJM300_RS06550	COG0367	asparagine synthase
PSJM300_RS06555	COG0583	DNA-binding transcription factor activity
PSJM300_RS06565	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PSJM300_RS06565	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
PSJM300_RS06575	COG0183	Belongs to the thiolase family
PSJM300_RS06580	COG0114	fumarate hydratase activity
PSJM300_RS06590	COG0271	Belongs to the BolA IbaG family
PSJM300_RS06595	COG1054	Belongs to the UPF0176 family
PSJM300_RS06605	COG1132	(ABC) transporter
PSJM300_RS06610	COG0840	transmembrane signaling receptor activity
PSJM300_RS06630	COG0583	DNA-binding transcription factor activity
PSJM300_RS06635	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
PSJM300_RS06640	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS06650	COG2079	MmgE PrpD family protein
PSJM300_RS06670	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PSJM300_RS06675	COG1804	L-carnitine dehydratase bile acid-inducible protein F
PSJM300_RS06680	COG0583	DNA-binding transcription factor activity
PSJM300_RS06700	COG4149	molybdate abc transporter
PSJM300_RS06705	COG0725	ABC transporter, periplasmic molybdate-binding protein
PSJM300_RS06710	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
PSJM300_RS06715	COG0668	transmembrane transport
PSJM300_RS06730	COG4303	Ethanolamine ammonia lyase large subunit
PSJM300_RS06735	COG3192	ethanolamine utilization protein
PSJM300_RS06765	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PSJM300_RS06780	COG1770	oligopeptidase
PSJM300_RS06785	COG1024	Enoyl-CoA hydratase
PSJM300_RS06785	COG1250	3-hydroxyacyl-CoA dehydrogenase
PSJM300_RS06790	COG0183	Belongs to the thiolase family
PSJM300_RS06825	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PSJM300_RS06870	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
PSJM300_RS06915	COG0438	transferase activity, transferring glycosyl groups
PSJM300_RS06920	COG0250	Participates in transcription elongation, termination and antitermination
PSJM300_RS06955	COG3039	Transposase
PSJM300_RS06990	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS07010	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
PSJM300_RS07015	COG0066	3-isopropylmalate dehydratase activity
PSJM300_RS07040	COG0135	phosphoribosylanthranilate isomerase activity
PSJM300_RS07045	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
PSJM300_RS07050	COG0285	dihydrofolate synthase activity
PSJM300_RS07055	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
PSJM300_RS07060	COG3385	transposase activity
PSJM300_RS07065	COG1286	toxin biosynthetic process
PSJM300_RS07120	COG3039	Transposase
PSJM300_RS07150	COG1131	(ABC) transporter
PSJM300_RS07165	COG1278	Cold shock
PSJM300_RS07175	COG2226	methyltransferase
PSJM300_RS07180	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
PSJM300_RS07185	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
PSJM300_RS07195	COG2166	iron-sulfur cluster assembly
PSJM300_RS07200	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
PSJM300_RS07205	COG2171	N-acyltransferase activity
PSJM300_RS07210	COG1393	Belongs to the ArsC family
PSJM300_RS07225	COG0436	Aminotransferase
PSJM300_RS07240	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
PSJM300_RS07245	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
PSJM300_RS07255	COG0628	permease
PSJM300_RS07265	COG0427	acetyl-CoA hydrolase
PSJM300_RS07280	COG1393	Belongs to the ArsC family
PSJM300_RS07285	COG1295	ribonuclease BN
PSJM300_RS07305	COG0442	prolyl-tRNA aminoacylation
PSJM300_RS07320	COG2900	Belongs to the SlyX family
PSJM300_RS07330	COG0783	Belongs to the Dps family
PSJM300_RS07335	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
PSJM300_RS07345	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
PSJM300_RS07350	COG0632	four-way junction helicase activity
PSJM300_RS07355	COG2255	four-way junction helicase activity
PSJM300_RS07360	COG0824	Thioesterase
PSJM300_RS07380	COG0823	Involved in the tonB-independent uptake of proteins
PSJM300_RS07385	COG2885	chlorophyll binding
PSJM300_RS07390	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
PSJM300_RS07395	COG0602	queuosine metabolic process
PSJM300_RS07400	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
PSJM300_RS07410	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
PSJM300_RS07415	COG4783	chaperone-mediated protein folding
PSJM300_RS07420	COG0425	Belongs to the sulfur carrier protein TusA family
PSJM300_RS07425	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
PSJM300_RS07435	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PSJM300_RS07445	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
PSJM300_RS07455	COG4974	Belongs to the 'phage' integrase family
PSJM300_RS07495	COG0789	Transcriptional regulator
PSJM300_RS07515	COG1126	abc transporter atp-binding protein
PSJM300_RS07520	COG0765	amino acid transport
PSJM300_RS07525	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PSJM300_RS07540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PSJM300_RS07550	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
PSJM300_RS07560	COG1335	isochorismatase
PSJM300_RS07590	COG0640	Transcriptional regulator
PSJM300_RS07620	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PSJM300_RS07635	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
PSJM300_RS07665	COG1917	Cupin 2, conserved barrel domain protein
PSJM300_RS07665	COG4977	sequence-specific DNA binding
PSJM300_RS07670	COG1764	response to oxidative stress
PSJM300_RS07680	COG0840	transmembrane signaling receptor activity
PSJM300_RS07690	COG0583	DNA-binding transcription factor activity
PSJM300_RS07700	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
PSJM300_RS07715	COG0471	metal ion transport
PSJM300_RS07720	COG1929	Belongs to the glycerate kinase type-1 family
PSJM300_RS07725	COG2814	Major facilitator Superfamily
PSJM300_RS07740	COG0583	DNA-binding transcription factor activity
PSJM300_RS07745	COG0431	NADPH-dependent FMN reductase
PSJM300_RS07750	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PSJM300_RS07760	COG0640	Transcriptional regulator
PSJM300_RS07775	COG2223	nitrite transmembrane transporter activity
PSJM300_RS07785	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
PSJM300_RS07815	COG3174	membrane
PSJM300_RS07830	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
PSJM300_RS07840	COG2814	Major facilitator Superfamily
PSJM300_RS07845	COG2182	Extracellular solute-binding protein
PSJM300_RS07855	COG4580	involved in the transport of maltose and maltodextrins
PSJM300_RS07875	COG0366	Alpha amylase catalytic
PSJM300_RS07885	COG1175	transmembrane transport
PSJM300_RS07890	COG3833	ABC-type maltose transport systems, permease component
PSJM300_RS07900	COG0366	Alpha amylase catalytic
PSJM300_RS07910	COG2076	Multidrug Resistance protein
PSJM300_RS07915	COG2974	May be involved in recombination
PSJM300_RS07935	COG0545	Peptidyl-prolyl cis-trans isomerase
PSJM300_RS07950	COG0556	nucleotide-excision repair
PSJM300_RS07970	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PSJM300_RS08005	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
PSJM300_RS08035	COG3409	Peptidoglycan-binding domain 1 protein
PSJM300_RS08035	COG3267	Type II secretory pathway component ExeA
PSJM300_RS08045	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PSJM300_RS08050	COG1459	type II secretion system
PSJM300_RS08055	COG2165	general secretion pathway protein
PSJM300_RS08060	COG2165	general secretion pathway protein
PSJM300_RS08105	COG0776	regulation of translation
PSJM300_RS08130	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
PSJM300_RS08135	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
PSJM300_RS08160	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PSJM300_RS08180	COG1007	ATP synthesis coupled electron transport
PSJM300_RS08195	COG0713	ATP synthesis coupled electron transport
PSJM300_RS08205	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PSJM300_RS08235	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PSJM300_RS08240	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
PSJM300_RS08265	COG3707	response regulator
PSJM300_RS08295	COG0714	Associated with various cellular activities
PSJM300_RS08310	COG1131	(ABC) transporter
PSJM300_RS08315	COG0842	Transport permease protein
PSJM300_RS08330	COG2853	Lipoprotein
PSJM300_RS08340	COG0745	RESPONSE REGULATOR receiver
PSJM300_RS08350	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
PSJM300_RS08355	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
PSJM300_RS08385	COG3206	protein involved in exopolysaccharide biosynthesis
PSJM300_RS08385	COG0489	protein tyrosine kinase activity
PSJM300_RS08390	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PSJM300_RS08395	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
PSJM300_RS08415	COG0741	lytic transglycosylase activity
PSJM300_RS08420	COG0488	(ABC) transporter
PSJM300_RS08430	COG0589	response to stress
PSJM300_RS08440	COG0121	glutamine amidotransferase
PSJM300_RS08460	COG0542	response to heat
PSJM300_RS08470	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
PSJM300_RS08475	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
PSJM300_RS08485	COG2832	Protein of unknown function (DUF454)
PSJM300_RS08515	COG0167	dihydroorotate dehydrogenase activity
PSJM300_RS08520	COG3130	regulation of translation
PSJM300_RS08525	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
PSJM300_RS08525	COG0116	Belongs to the methyltransferase superfamily
PSJM300_RS08530	COG2027	D-alanyl-D-alanine carboxypeptidase
PSJM300_RS08535	COG3171	Protein conserved in bacteria
PSJM300_RS08590	COG0521	Mo-molybdopterin cofactor biosynthetic process
PSJM300_RS08595	COG0303	'Molybdopterin
PSJM300_RS08625	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
PSJM300_RS08635	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
PSJM300_RS08640	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
PSJM300_RS08645	COG0291	Belongs to the bacterial ribosomal protein bL35 family
PSJM300_RS08655	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
PSJM300_RS08660	COG0072	phenylalanine-tRNA ligase activity
PSJM300_RS08665	COG0776	regulation of translation
PSJM300_RS08690	COG5642	Protein of unknown function (DUF2384)
PSJM300_RS08700	COG0243	molybdopterin cofactor binding
PSJM300_RS08710	COG0477	Major facilitator Superfamily
PSJM300_RS08750	COG2207	Transcriptional regulator
PSJM300_RS08800	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
PSJM300_RS08805	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
PSJM300_RS08805	COG2010	Cytochrome c
PSJM300_RS08815	COG1981	membrane
PSJM300_RS08820	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
PSJM300_RS08830	COG3115	cell septum assembly
PSJM300_RS08835	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
PSJM300_RS08840	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
PSJM300_RS08870	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
PSJM300_RS08905	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
PSJM300_RS08915	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PSJM300_RS08925	COG1696	Membrane protein involved in D-alanine export
PSJM300_RS08955	COG2814	Major facilitator Superfamily
PSJM300_RS08960	COG4948	Mandelate Racemase Muconate Lactonizing
PSJM300_RS08965	COG4829	muconolactone delta-isomerase
PSJM300_RS08970	COG3485	protocatechuate 3,4-dioxygenase
PSJM300_RS08975	COG3135	benzoate transporter
PSJM300_RS09015	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PSJM300_RS09020	COG2223	nitrite transmembrane transporter activity
PSJM300_RS09060	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
PSJM300_RS09060	COG0316	Belongs to the HesB IscA family
PSJM300_RS09065	COG2197	response regulator
PSJM300_RS09070	COG3706	GGDEF domain
PSJM300_RS09085	COG2323	membrane
PSJM300_RS09105	COG0840	transmembrane signaling receptor activity
PSJM300_RS09110	COG1968	undecaprenyl-diphosphatase activity
PSJM300_RS09115	COG2267	carboxylic ester hydrolase activity
PSJM300_RS09125	COG0488	(ABC) transporter
PSJM300_RS09135	COG0252	asparaginase activity
PSJM300_RS09165	COG0668	transmembrane transport
PSJM300_RS09185	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
PSJM300_RS09190	COG0642	Histidine kinase
PSJM300_RS09205	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
PSJM300_RS09215	COG2863	cytochrome
PSJM300_RS09220	COG3258	Cytochrome c
PSJM300_RS09240	COG4774	siderophore transport
PSJM300_RS09260	COG0640	Transcriptional regulator
PSJM300_RS09285	COG1429	ligase activity, forming nitrogen-metal bonds
PSJM300_RS09290	COG4771	TonB-dependent receptor
PSJM300_RS09295	COG0254	rRNA binding
PSJM300_RS09300	COG4206	TonB-dependent receptor
PSJM300_RS09315	COG1797	cobyrinic acid a,c-diamide synthase activity
PSJM300_RS09320	COG0778	Nitroreductase
PSJM300_RS09325	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
PSJM300_RS09335	COG1492	cobalamin metabolic process
PSJM300_RS09345	COG1366	Belongs to the anti-sigma-factor antagonist family
PSJM300_RS09350	COG1366	Belongs to the anti-sigma-factor antagonist family
PSJM300_RS09355	COG2172	sigma factor antagonist activity
PSJM300_RS09365	COG2205	protein histidine kinase activity
PSJM300_RS09370	COG0784	Response regulator, receiver
PSJM300_RS09370	COG4191	Histidine kinase
PSJM300_RS09375	COG2358	TRAP transporter, solute receptor (TAXI family
PSJM300_RS09380	COG0251	oxidation-reduction process
PSJM300_RS09395	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
PSJM300_RS09400	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PSJM300_RS09405	COG3265	gluconokinase activity
PSJM300_RS09410	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PSJM300_RS09415	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PSJM300_RS09420	COG1609	Transcriptional regulator
PSJM300_RS09435	COG1070	Carbohydrate kinase
PSJM300_RS09440	COG0246	Mannitol dehydrogenase
PSJM300_RS09450	COG0395	ABC-type sugar transport system, permease component
PSJM300_RS09455	COG1175	transmembrane transport
PSJM300_RS09475	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
PSJM300_RS09480	COG0708	Exodeoxyribonuclease III
PSJM300_RS09490	COG0729	surface antigen
PSJM300_RS09500	COG0840	transmembrane signaling receptor activity
PSJM300_RS09520	COG2205	protein histidine kinase activity
PSJM300_RS09520	COG0784	Response regulator, receiver
PSJM300_RS09560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
PSJM300_RS09575	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS09600	COG0437	4 iron, 4 sulfur cluster binding
PSJM300_RS09605	COG2864	formate dehydrogenase
PSJM300_RS09610	COG3058	Necessary for formate dehydrogenase activity
PSJM300_RS09620	COG0366	Alpha amylase catalytic
PSJM300_RS09625	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
PSJM300_RS09635	COG0392	lysyltransferase activity
PSJM300_RS09640	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
PSJM300_RS09645	COG3568	Endonuclease Exonuclease Phosphatase
PSJM300_RS09655	COG0583	DNA-binding transcription factor activity
PSJM300_RS09660	COG3384	dioxygenase
PSJM300_RS09670	COG3038	cytochrome b561
PSJM300_RS09675	COG0739	heme binding
PSJM300_RS09720	COG0297	glycogen (starch) synthase activity
PSJM300_RS09725	COG1058	Belongs to the CinA family
PSJM300_RS09725	COG1546	Belongs to the CinA family
PSJM300_RS09730	COG3685	Protein conserved in bacteria
PSJM300_RS09760	COG0583	DNA-binding transcription factor activity
PSJM300_RS09840	COG1025	Belongs to the peptidase M16 family
PSJM300_RS09845	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
PSJM300_RS09855	COG0210	DNA helicase
PSJM300_RS09870	COG4771	TonB-dependent receptor
PSJM300_RS09875	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PSJM300_RS09880	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PSJM300_RS09885	COG1120	ATPase activity
PSJM300_RS09890	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
PSJM300_RS09895	COG3385	transposase activity
PSJM300_RS09900	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PSJM300_RS09910	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS09915	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
PSJM300_RS09920	COG1535	isochorismatase
PSJM300_RS09920	COG3433	isochorismatase activity
PSJM300_RS09925	COG1021	2,3-dihydroxybenzoate-AMP ligase
PSJM300_RS09930	COG1169	isochorismate synthase
PSJM300_RS09935	COG0587	DNA-directed DNA polymerase activity
PSJM300_RS09950	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
PSJM300_RS09955	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
PSJM300_RS09980	COG1024	Enoyl-CoA hydratase
PSJM300_RS09985	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS09990	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS10005	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS10010	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
PSJM300_RS10015	COG1024	Enoyl-CoA hydratase
PSJM300_RS10030	COG0789	Transcriptional regulator
PSJM300_RS10040	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PSJM300_RS10050	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
PSJM300_RS10070	COG2211	Major facilitator Superfamily
PSJM300_RS10080	COG0673	inositol 2-dehydrogenase activity
PSJM300_RS10085	COG1609	Transcriptional regulator
PSJM300_RS10115	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PSJM300_RS10120	COG2721	sulfolactate sulfo-lyase activity
PSJM300_RS10130	COG1012	belongs to the aldehyde dehydrogenase family
PSJM300_RS10135	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
PSJM300_RS10145	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
PSJM300_RS10155	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PSJM300_RS10185	COG0417	DNA replication proofreading
PSJM300_RS10210	COG0322	excinuclease ABC activity
PSJM300_RS10220	COG0604	alcohol dehydrogenase
PSJM300_RS10225	COG0616	signal peptide processing
PSJM300_RS10245	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS10260	COG2816	NAD+ diphosphatase activity
PSJM300_RS10270	COG1024	Enoyl-CoA hydratase
PSJM300_RS10280	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
PSJM300_RS10285	COG0328	RNA-DNA hybrid ribonuclease activity
PSJM300_RS10300	COG0741	lytic transglycosylase activity
PSJM300_RS10300	COG1388	LysM domain
PSJM300_RS10315	COG4174	ABC transporter (Permease)
PSJM300_RS10320	COG4239	(ABC) transporter, permease
PSJM300_RS10325	COG4172	Belongs to the ABC transporter superfamily
PSJM300_RS10335	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PSJM300_RS10345	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
PSJM300_RS10350	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
PSJM300_RS10360	COG0544	peptidyl-prolyl cis-trans isomerase activity
PSJM300_RS10375	COG2181	nitrate reductase activity
PSJM300_RS10380	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
PSJM300_RS10385	COG1140	nitrate reductase beta subunit
PSJM300_RS10390	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
PSJM300_RS10395	COG2223	nitrite transmembrane transporter activity
PSJM300_RS10405	COG2223	nitrite transmembrane transporter activity
PSJM300_RS10410	COG3850	Histidine kinase
PSJM300_RS10415	COG2197	response regulator
PSJM300_RS10435	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PSJM300_RS10450	COG0655	NAD(P)H dehydrogenase (quinone) activity
PSJM300_RS10465	COG0583	DNA-binding transcription factor activity
PSJM300_RS10485	COG5489	Protein of unknown function (DUF736)
PSJM300_RS10510	COG2003	Belongs to the UPF0758 family
PSJM300_RS10585	COG1204	response to ionizing radiation
PSJM300_RS10605	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PSJM300_RS10645	COG3550	peptidyl-serine autophosphorylation
PSJM300_RS10695	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
PSJM300_RS10755	COG2132	Multicopper oxidase
PSJM300_RS10805	COG0156	8-amino-7-oxononanoate synthase activity
PSJM300_RS10820	COG0367	asparagine synthase
PSJM300_RS10830	COG0583	DNA-binding transcription factor activity
PSJM300_RS10875	COG4962	Type ii secretion system protein e
PSJM300_RS10890	COG3451	type IV secretory pathway VirB4
PSJM300_RS10940	COG0582	viral genome integration into host DNA
PSJM300_RS10960	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
PSJM300_RS10975	COG0395	ABC-type sugar transport system, permease component
PSJM300_RS10985	COG3842	ATPase activity
PSJM300_RS10995	COG3284	Transcriptional regulator
PSJM300_RS11000	COG0215	cysteine-tRNA ligase activity
PSJM300_RS11005	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PSJM300_RS11010	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
PSJM300_RS11015	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PSJM300_RS11050	COG0668	transmembrane transport
PSJM300_RS11065	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
PSJM300_RS11075	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
PSJM300_RS11080	COG2828	Protein conserved in bacteria
PSJM300_RS11090	COG0372	Belongs to the citrate synthase family
PSJM300_RS11100	COG1802	Transcriptional regulator
PSJM300_RS11115	COG0189	ligase activity
PSJM300_RS11160	COG0784	Response regulator, receiver
PSJM300_RS11160	COG2205	protein histidine kinase activity
PSJM300_RS11175	COG0535	radical SAM domain protein
PSJM300_RS11185	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
PSJM300_RS11190	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
PSJM300_RS11245	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PSJM300_RS11250	COG0167	dihydroorotate dehydrogenase activity
PSJM300_RS11275	COG1538	Outer membrane efflux protein
PSJM300_RS11295	COG0728	peptidoglycan biosynthetic process
PSJM300_RS11310	COG1115	amino acid carrier protein
PSJM300_RS11320	COG0573	inorganic phosphate transmembrane transporter activity
PSJM300_RS11330	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PSJM300_RS11335	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
PSJM300_RS11340	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
PSJM300_RS11345	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
PSJM300_RS11350	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PSJM300_RS11360	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
PSJM300_RS11365	COG0730	response to heat
PSJM300_RS11380	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
PSJM300_RS11385	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
PSJM300_RS11400	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
PSJM300_RS11410	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
PSJM300_RS11440	COG2840	Smr protein MutS2
PSJM300_RS11445	COG0302	gtp cyclohydrolase
PSJM300_RS11455	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PSJM300_RS11470	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
PSJM300_RS11475	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
PSJM300_RS11485	COG0077	Prephenate dehydratase
PSJM300_RS11485	COG1605	Chorismate mutase
PSJM300_RS11490	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
PSJM300_RS11500	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
PSJM300_RS11515	COG4771	TonB-dependent receptor
PSJM300_RS11520	COG0500	methyltransferase
PSJM300_RS11570	COG3180	Ammonia monooxygenase
PSJM300_RS11575	COG0560	Phosphoserine phosphatase
PSJM300_RS11590	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
PSJM300_RS11620	COG4181	ATPase activity
PSJM300_RS11625	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
PSJM300_RS11635	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
PSJM300_RS11640	COG0084	hydrolase, TatD family'
PSJM300_RS11665	COG0714	Associated with various cellular activities
PSJM300_RS11680	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
PSJM300_RS11685	COG0709	Synthesizes selenophosphate from selenide and ATP
PSJM300_RS11695	COG0628	permease
PSJM300_RS11730	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
PSJM300_RS11735	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PSJM300_RS11745	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
PSJM300_RS11755	COG0705	Rhomboid family
PSJM300_RS11760	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
PSJM300_RS11765	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
PSJM300_RS11795	COG0446	pyridine nucleotide-disulphide oxidoreductase
PSJM300_RS11795	COG1902	pentaerythritol trinitrate reductase activity
PSJM300_RS11810	COG1294	oxidase, subunit
PSJM300_RS11815	COG1271	oxidase subunit
PSJM300_RS11820	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
PSJM300_RS11830	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
PSJM300_RS11835	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
PSJM300_RS11840	COG1414	Transcriptional regulator
PSJM300_RS11875	COG2920	part of a sulfur-relay system
PSJM300_RS11880	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
PSJM300_RS11885	COG0435	Glutathione S-transferase
PSJM300_RS11890	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
PSJM300_RS11890	COG1648	precorrin-2 dehydrogenase activity
PSJM300_RS11895	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
PSJM300_RS11900	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
PSJM300_RS11905	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
PSJM300_RS11910	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
PSJM300_RS11920	COG0492	ferredoxin-NADP+ reductase activity
PSJM300_RS11930	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
PSJM300_RS11935	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
PSJM300_RS11940	COG0542	response to heat
PSJM300_RS11945	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
PSJM300_RS11970	COG0482	sulfurtransferase activity
PSJM300_RS11975	COG2915	High frequency lysogenization protein hflD homolog
PSJM300_RS11985	COG2850	peptidyl-arginine hydroxylation
PSJM300_RS11990	COG2153	protein acetylation
PSJM300_RS12015	COG2056	Na+-H+ antiporter family
PSJM300_RS12020	COG0720	synthase
PSJM300_RS12025	COG0251	oxidation-reduction process
PSJM300_RS12045	COG0840	transmembrane signaling receptor activity
PSJM300_RS12055	COG3278	Belongs to the heme-copper respiratory oxidase family
PSJM300_RS12070	COG3278	Belongs to the heme-copper respiratory oxidase family
PSJM300_RS12085	COG2010	Cytochrome c
PSJM300_RS12090	COG0348	domain, Protein
PSJM300_RS12115	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
PSJM300_RS12125	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
PSJM300_RS12165	COG0402	S-adenosylhomocysteine deaminase activity
PSJM300_RS12170	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
PSJM300_RS12175	COG0546	phosphoglycolate phosphatase activity
PSJM300_RS12180	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS12190	COG0800	Aldolase
PSJM300_RS12205	COG1737	Transcriptional regulator
PSJM300_RS12210	COG4580	involved in the transport of maltose and maltodextrins
PSJM300_RS12215	COG3842	ATPase activity
PSJM300_RS12220	COG0395	ABC-type sugar transport system, permease component
PSJM300_RS12225	COG1175	transmembrane transport
PSJM300_RS12230	COG1653	transport
PSJM300_RS12265	COG1803	Methylglyoxal synthase
PSJM300_RS12270	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
PSJM300_RS12280	COG0180	Tryptophanyl-tRNA synthetase
PSJM300_RS12285	COG0009	L-threonylcarbamoyladenylate synthase
PSJM300_RS12290	COG0613	PHP domain protein
PSJM300_RS12295	COG2350	Protein conserved in bacteria
PSJM300_RS12305	COG0745	RESPONSE REGULATOR receiver
PSJM300_RS12320	COG0778	Nitroreductase
PSJM300_RS12325	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PSJM300_RS12330	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
PSJM300_RS12340	COG3135	benzoate transporter
PSJM300_RS12350	COG0727	PFAM Uncharacterised protein family (UPF0153)
PSJM300_RS12355	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
PSJM300_RS12360	COG0590	tRNA wobble adenosine to inosine editing
PSJM300_RS12365	COG2354	Protein conserved in bacteria
PSJM300_RS12390	COG1752	Esterase of the alpha-beta hydrolase superfamily
PSJM300_RS12415	COG0308	aminopeptidase N
PSJM300_RS12440	COG1943	Transposase
PSJM300_RS12445	COG1943	Transposase
PSJM300_RS12460	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PSJM300_RS12460	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PSJM300_RS12470	COG0745	RESPONSE REGULATOR receiver
PSJM300_RS12475	COG2205	protein histidine kinase activity
PSJM300_RS12480	COG2977	Belongs to the P-Pant transferase superfamily
PSJM300_RS12490	COG2860	membrane
PSJM300_RS12495	COG0784	Response regulator, receiver
PSJM300_RS12495	COG2205	protein histidine kinase activity
PSJM300_RS12495	COG5002	protein histidine kinase activity
PSJM300_RS12500	COG0405	Gamma-glutamyltransferase
PSJM300_RS12510	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PSJM300_RS12515	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PSJM300_RS12520	COG3956	TIGRFAM MazG family protein
PSJM300_RS12550	COG1201	RNA secondary structure unwinding
PSJM300_RS12560	COG0411	ABC transporter
PSJM300_RS12585	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
PSJM300_RS12590	COG0830	nickel cation binding
PSJM300_RS12595	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
PSJM300_RS12600	COG0804	urea catabolic process
PSJM300_RS12605	COG0832	Belongs to the urease beta subunit family
PSJM300_RS12610	COG0831	urea catabolic process
PSJM300_RS12615	COG0829	nickel cation binding
PSJM300_RS12625	COG1793	dna ligase
PSJM300_RS12640	COG1793	dna ligase
PSJM300_RS12640	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
PSJM300_RS12650	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
PSJM300_RS12655	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
PSJM300_RS12670	COG1805	sodium ion transport
PSJM300_RS12685	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
PSJM300_RS12695	COG1477	protein flavinylation
PSJM300_RS12705	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
PSJM300_RS12710	COG0584	glycerophosphoryl diester phosphodiesterase
PSJM300_RS12725	COG4591	ABC-type transport system involved in lipoprotein release permease component
PSJM300_RS12730	COG1136	(ABC) transporter
PSJM300_RS12750	COG0811	peptide transport
PSJM300_RS12760	COG1663	tetraacyldisaccharide 4'-kinase activity
PSJM300_RS12765	COG2835	tetraacyldisaccharide 4'-kinase activity
PSJM300_RS12770	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
PSJM300_RS12775	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
PSJM300_RS12780	COG0812	UDP-N-acetylmuramate dehydrogenase activity
PSJM300_RS12785	COG0069	glutamate synthase activity
PSJM300_RS12790	COG1530	ribonuclease E activity
PSJM300_RS12800	COG0546	phosphoglycolate phosphatase activity
PSJM300_RS12805	COG0616	signal peptide processing
PSJM300_RS12805	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
PSJM300_RS12810	COG0424	maF-like protein
PSJM300_RS12815	COG1399	metal-binding, possibly nucleic acid-binding protein
PSJM300_RS12825	COG0416	fatty acid biosynthetic process
PSJM300_RS12840	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PSJM300_RS12845	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
PSJM300_RS12855	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
PSJM300_RS12860	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
PSJM300_RS12880	COG1278	Cold shock
PSJM300_RS12895	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
PSJM300_RS12905	COG1862	Preprotein translocase
PSJM300_RS12920	COG3134	Outer membrane lipoprotein
PSJM300_RS12945	COG1104	cysteine desulfurase activity
PSJM300_RS12955	COG0316	Belongs to the HesB IscA family
PSJM300_RS12960	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
PSJM300_RS12965	COG0443	Heat shock 70 kDa protein
PSJM300_RS12980	COG0105	UTP biosynthetic process
PSJM300_RS12985	COG0820	rRNA (adenine-C2-)-methyltransferase activity
PSJM300_RS12995	COG1426	Protein conserved in bacteria
PSJM300_RS13000	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
PSJM300_RS13005	COG0124	histidyl-tRNA synthetase
PSJM300_RS13010	COG2976	Protein conserved in bacteria
PSJM300_RS13020	COG1160	GTP binding
PSJM300_RS13025	COG1045	serine acetyltransferase
PSJM300_RS13030	COG0436	Aminotransferase
PSJM300_RS13040	COG3647	Membrane
PSJM300_RS13045	COG2356	endonuclease I
PSJM300_RS13055	COG1064	alcohol dehydrogenase
PSJM300_RS13060	COG2124	cytochrome p450
PSJM300_RS13065	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PSJM300_RS13080	COG0668	transmembrane transport
PSJM300_RS13085	COG1335	isochorismatase
PSJM300_RS13090	COG0739	heme binding
PSJM300_RS13095	COG1570	exodeoxyribonuclease VII activity
PSJM300_RS13115	COG0518	GMP synthase (glutamine-hydrolyzing) activity
PSJM300_RS13115	COG0519	Catalyzes the synthesis of GMP from XMP
PSJM300_RS13120	COG1126	abc transporter atp-binding protein
PSJM300_RS13130	COG0165	Argininosuccinate lyase
PSJM300_RS13135	COG0765	amino acid transport
PSJM300_RS13145	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
PSJM300_RS13160	COG2132	Multicopper oxidase
PSJM300_RS13170	COG3842	ATPase activity
PSJM300_RS13180	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
PSJM300_RS13195	COG3706	GGDEF domain
PSJM300_RS13205	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
PSJM300_RS13210	COG1902	pentaerythritol trinitrate reductase activity
PSJM300_RS13225	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
PSJM300_RS13230	COG1253	flavin adenine dinucleotide binding
PSJM300_RS13260	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
PSJM300_RS13265	COG0563	adenylate kinase activity
PSJM300_RS13290	COG0742	ribosomal rna small subunit methyltransferase
PSJM300_RS13310	COG1309	transcriptional regulator
PSJM300_RS13335	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
PSJM300_RS13340	COG0348	domain, Protein
PSJM300_RS13345	COG1380	Effector of murein hydrolase LrgA
PSJM300_RS13350	COG1346	cytolysis
PSJM300_RS13360	COG0655	NAD(P)H dehydrogenase (quinone) activity
PSJM300_RS13375	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
PSJM300_RS13385	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
PSJM300_RS13390	COG1272	protein, Hemolysin III
PSJM300_RS13405	COG3573	Dehydrogenase
PSJM300_RS13410	COG0028	Belongs to the TPP enzyme family
PSJM300_RS13420	COG2937	Belongs to the GPAT DAPAT family
PSJM300_RS13450	COG3039	Transposase
PSJM300_RS13470	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PSJM300_RS13475	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
PSJM300_RS13490	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
PSJM300_RS13500	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
PSJM300_RS13540	COG2009	succinate dehydrogenase
PSJM300_RS13545	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
PSJM300_RS13550	COG1053	succinate dehydrogenase
PSJM300_RS13555	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
PSJM300_RS13575	COG0045	succinate-CoA ligase (ADP-forming) activity
PSJM300_RS13610	COG0326	Molecular chaperone. Has ATPase activity
PSJM300_RS13640	COG0583	DNA-binding transcription factor activity
PSJM300_RS13645	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
PSJM300_RS13655	COG2226	methyltransferase
PSJM300_RS13665	COG2188	Transcriptional regulator
PSJM300_RS13680	COG0840	transmembrane signaling receptor activity
PSJM300_RS13745	COG0826	peptidase U32
PSJM300_RS13755	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS13765	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
PSJM300_RS13780	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
PSJM300_RS13795	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
PSJM300_RS13815	COG0483	inositol monophosphate 1-phosphatase activity
PSJM300_RS13845	COG0697	spore germination
PSJM300_RS13850	COG0217	transcriptional regulatory protein
PSJM300_RS13860	COG0589	response to stress
PSJM300_RS13875	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
PSJM300_RS13910	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
PSJM300_RS13915	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
PSJM300_RS13920	COG0585	pseudouridine synthase activity
PSJM300_RS13925	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
PSJM300_RS13935	COG1902	pentaerythritol trinitrate reductase activity
PSJM300_RS13940	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
PSJM300_RS13945	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
PSJM300_RS13950	COG0583	DNA-binding transcription factor activity
PSJM300_RS13960	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
PSJM300_RS13970	COG0148	phosphopyruvate hydratase activity
PSJM300_RS13975	COG2877	3-deoxy-8-phosphooctulonate synthase activity
PSJM300_RS13980	COG0504	CTP synthase activity
PSJM300_RS13985	COG0037	tRNA processing
PSJM300_RS13990	COG0825	malonyl-CoA metabolic process
PSJM300_RS14000	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
PSJM300_RS14005	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PSJM300_RS14010	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
PSJM300_RS14015	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
PSJM300_RS14040	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
PSJM300_RS14050	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
PSJM300_RS14055	COG0233	cytoplasmic translational termination
PSJM300_RS14060	COG0528	UMP kinase activity
PSJM300_RS14065	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
PSJM300_RS14070	COG0052	Belongs to the universal ribosomal protein uS2 family
PSJM300_RS14075	COG0024	Methionine aminopeptidase
PSJM300_RS14080	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
PSJM300_RS14085	COG1320	monovalent cation:proton antiporter activity
PSJM300_RS14090	COG2212	antiporter activity
PSJM300_RS14095	COG1863	multisubunit Na H antiporter MnhE subunit
PSJM300_RS14100	COG0651	ATP synthesis coupled electron transport
PSJM300_RS14105	COG1006	Multisubunit Na H antiporter MnhC subunit
PSJM300_RS14110	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
PSJM300_RS14110	COG2111	Na H antiporter
PSJM300_RS14115	COG3133	Outer membrane lipoprotein
PSJM300_RS14125	COG0259	pyridoxamine-phosphate oxidase activity
PSJM300_RS14140	COG1199	ATP-dependent helicase activity
PSJM300_RS14150	COG3012	SEC-C Motif Domain Protein
PSJM300_RS14160	COG0583	DNA-binding transcription factor activity
PSJM300_RS14175	COG3148	PFAM DTW domain containing protein
PSJM300_RS14215	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
PSJM300_RS14225	COG4221	oxidoreductase activity
PSJM300_RS14235	COG2207	Transcriptional regulator
PSJM300_RS14250	COG2116	formate transmembrane transporter activity
PSJM300_RS14260	COG2146	nitrite reductase [NAD(P)H] activity
PSJM300_RS14260	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
PSJM300_RS14275	COG1309	transcriptional regulator
PSJM300_RS14295	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PSJM300_RS14305	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PSJM300_RS14315	COG3845	ABC transporter
PSJM300_RS14320	COG4603	Belongs to the binding-protein-dependent transport system permease family
PSJM300_RS14325	COG1079	Belongs to the binding-protein-dependent transport system permease family
PSJM300_RS14355	COG0402	S-adenosylhomocysteine deaminase activity
PSJM300_RS14360	COG1802	Transcriptional regulator
PSJM300_RS14365	COG2252	PERMEase
PSJM300_RS14370	COG1230	cation diffusion facilitator family transporter
PSJM300_RS14375	COG0640	Transcriptional regulator
PSJM300_RS14385	COG0789	Transcriptional regulator
PSJM300_RS14410	COG3608	succinylglutamate desuccinylase aspartoacylase
PSJM300_RS14410	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
PSJM300_RS14435	COG3195	allantoin biosynthetic process
PSJM300_RS14435	COG3648	Uricase
PSJM300_RS14440	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
PSJM300_RS14450	COG2233	PERMEase
PSJM300_RS14465	COG0840	transmembrane signaling receptor activity
PSJM300_RS14480	COG1309	transcriptional regulator
PSJM300_RS14490	COG0708	Exodeoxyribonuclease III
PSJM300_RS14500	COG3960	tartronate-semialdehyde synthase activity
PSJM300_RS14510	COG3622	Belongs to the hyi family
PSJM300_RS14515	COG2084	Dehydrogenase
PSJM300_RS14525	COG0469	pyruvate kinase activity
PSJM300_RS14540	COG1017	nitric oxide dioxygenase activity
PSJM300_RS14540	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
PSJM300_RS14555	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
PSJM300_RS14570	COG0583	DNA-binding transcription factor activity
PSJM300_RS14575	COG1279	arginine transmembrane transporter activity
PSJM300_RS14595	COG1704	LemA family
PSJM300_RS14625	COG3257	ureidoglycine aminohydrolase activity
PSJM300_RS14635	COG0459	protein refolding
PSJM300_RS14640	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
PSJM300_RS14655	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS14675	COG0668	transmembrane transport
PSJM300_RS14680	COG1666	GTP binding
PSJM300_RS14685	COG0745	RESPONSE REGULATOR receiver
PSJM300_RS14700	COG2096	Adenosyltransferase
PSJM300_RS14730	COG0494	nUDIX hydrolase
PSJM300_RS14735	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
PSJM300_RS14740	COG0653	protein targeting
PSJM300_RS14765	COG2197	response regulator
PSJM300_RS14780	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
PSJM300_RS14785	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
PSJM300_RS14800	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
PSJM300_RS14805	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
PSJM300_RS14815	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
PSJM300_RS14820	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
PSJM300_RS14830	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
PSJM300_RS14835	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
PSJM300_RS14855	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
PSJM300_RS14875	COG1408	metallophosphoesterase
PSJM300_RS14885	COG0583	DNA-binding transcription factor activity
PSJM300_RS14890	COG2814	Major facilitator Superfamily
PSJM300_RS14895	COG0656	L-ascorbic acid biosynthetic process
PSJM300_RS14915	COG4974	Belongs to the 'phage' integrase family
PSJM300_RS15010	COG0165	Argininosuccinate lyase
PSJM300_RS15015	COG1301	dicarboxylic acid transport
PSJM300_RS15020	COG0583	DNA-binding transcription factor activity
PSJM300_RS15030	COG0288	reversible hydration of carbon dioxide
PSJM300_RS15035	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
PSJM300_RS15050	COG0456	acetyltransferase
PSJM300_RS15060	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
PSJM300_RS15070	COG0019	diaminopimelate decarboxylase activity
PSJM300_RS15110	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
PSJM300_RS15125	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
PSJM300_RS15140	COG1309	transcriptional regulator
PSJM300_RS15150	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
PSJM300_RS15160	COG0204	Acyl-transferase
PSJM300_RS15170	COG4999	Histidine kinase
PSJM300_RS15170	COG3850	Histidine kinase
PSJM300_RS15170	COG2205	protein histidine kinase activity
PSJM300_RS15170	COG3437	response regulator, receiver
PSJM300_RS15175	COG2885	chlorophyll binding
PSJM300_RS15180	COG0318	PFAM AMP-dependent synthetase and ligase
PSJM300_RS15185	COG1280	lysine exporter protein (LysE YggA)
PSJM300_RS15190	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
PSJM300_RS15195	COG2813	Specifically methylates the guanine in position
PSJM300_RS15200	COG2119	membrane
PSJM300_RS15210	COG0501	Belongs to the peptidase M48B family
PSJM300_RS15260	COG0659	secondary active sulfate transmembrane transporter activity
PSJM300_RS15265	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS15280	COG1285	pathogenesis
PSJM300_RS15295	COG0436	Aminotransferase
PSJM300_RS15300	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PSJM300_RS15305	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
PSJM300_RS15315	COG3852	Histidine kinase
PSJM300_RS15335	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
PSJM300_RS15340	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
PSJM300_RS15345	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
PSJM300_RS15350	COG0166	Belongs to the GPI family
PSJM300_RS15380	COG1185	polyribonucleotide nucleotidyltransferase activity
PSJM300_RS15385	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
PSJM300_RS15390	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
PSJM300_RS15395	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
PSJM300_RS15405	COG0195	Participates in both transcription termination and antitermination
PSJM300_RS15410	COG0779	Required for maturation of 30S ribosomal subunits
PSJM300_RS15425	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
PSJM300_RS15430	COG0149	triose-phosphate isomerase activity
PSJM300_RS15435	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
PSJM300_RS15440	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
PSJM300_RS15470	COG0505	Belongs to the CarA family
PSJM300_RS15480	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PSJM300_RS15540	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
PSJM300_RS15545	COG0484	heat shock protein binding
PSJM300_RS15550	COG0443	Heat shock 70 kDa protein
PSJM300_RS15555	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
PSJM300_RS15560	COG0497	DNA recombination
PSJM300_RS15575	COG2914	Belongs to the UPF0125 (RnfH) family
PSJM300_RS15585	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
PSJM300_RS15595	COG1620	l-lactate permease
PSJM300_RS15600	COG0247	lactate metabolic process
PSJM300_RS15630	COG4120	Belongs to the binding-protein-dependent transport system permease family
PSJM300_RS15635	COG1122	ATPase activity
PSJM300_RS15645	COG2814	Major facilitator Superfamily
PSJM300_RS15680	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
PSJM300_RS15680	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
PSJM300_RS15695	COG3154	lipid carrier protein
PSJM300_RS15700	COG0826	peptidase U32
PSJM300_RS15705	COG0826	peptidase U32
PSJM300_RS15710	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
PSJM300_RS15715	COG2967	ApaG domain
PSJM300_RS15720	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
PSJM300_RS15725	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PSJM300_RS15730	COG2766	serine protein kinase
PSJM300_RS15735	COG2718	Belongs to the UPF0229 family
PSJM300_RS15740	COG2719	SpoVR family
PSJM300_RS15745	COG0305	Participates in initiation and elongation during chromosome replication
PSJM300_RS15750	COG0359	binds to the 23S rRNA
PSJM300_RS15760	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
PSJM300_RS15765	COG0360	Binds together with S18 to 16S ribosomal RNA
PSJM300_RS15775	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PSJM300_RS15780	COG0557	exoribonuclease II activity
PSJM300_RS15795	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
PSJM300_RS15800	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
PSJM300_RS15805	COG0330	HflC and HflK could
PSJM300_RS15810	COG0330	HflC and HflK could
PSJM300_RS15815	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
PSJM300_RS15820	COG1923	regulation of RNA biosynthetic process
PSJM300_RS15825	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
PSJM300_RS15830	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
PSJM300_RS15835	COG0860	N-Acetylmuramoyl-L-alanine amidase
PSJM300_RS15840	COG0802	atpase or kinase
PSJM300_RS15845	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
PSJM300_RS15845	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
PSJM300_RS15865	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
PSJM300_RS15875	COG0531	amino acid
PSJM300_RS15880	COG4303	Ethanolamine ammonia lyase large subunit
PSJM300_RS15900	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
PSJM300_RS15905	COG1595	DNA-templated transcription, initiation
PSJM300_RS15910	COG3228	Belongs to the MtfA family
PSJM300_RS15920	COG1280	lysine exporter protein (LysE YggA)
PSJM300_RS15940	COG1253	flavin adenine dinucleotide binding
PSJM300_RS15950	COG0778	Nitroreductase
PSJM300_RS15960	COG1722	exodeoxyribonuclease VII activity
PSJM300_RS15965	COG0142	geranyltranstransferase activity
PSJM300_RS15970	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
PSJM300_RS15975	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
PSJM300_RS15980	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
PSJM300_RS15990	COG4206	TonB-dependent receptor
PSJM300_RS16000	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PSJM300_RS16005	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
PSJM300_RS16015	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
PSJM300_RS16020	COG3577	Aspartyl protease
PSJM300_RS16025	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
PSJM300_RS16030	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
PSJM300_RS16035	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
PSJM300_RS16040	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
PSJM300_RS16055	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PSJM300_RS16055	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
PSJM300_RS16070	COG2264	protein methyltransferase activity
PSJM300_RS16080	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
PSJM300_RS16085	COG0425	Belongs to the sulfur carrier protein TusA family
PSJM300_RS16090	COG2391	methyltransferase activity
PSJM300_RS16095	COG3118	belongs to the thioredoxin family
PSJM300_RS16105	COG1946	Acyl-CoA thioesterase
PSJM300_RS16135	COG1794	racemase activity, acting on amino acids and derivatives
PSJM300_RS16170	COG0583	DNA-binding transcription factor activity
PSJM300_RS16175	COG0625	glutathione transferase activity
PSJM300_RS16180	COG0513	Belongs to the DEAD box helicase family
PSJM300_RS16200	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS16210	COG1643	Atp-dependent helicase
PSJM300_RS16225	COG1522	sequence-specific DNA binding
PSJM300_RS16245	COG4771	TonB-dependent receptor
PSJM300_RS16250	COG0745	RESPONSE REGULATOR receiver
PSJM300_RS16285	COG3189	MarR family transcriptional regulator
PSJM300_RS16305	COG1115	amino acid carrier protein
PSJM300_RS16310	COG1760	l-serine dehydratase
PSJM300_RS16330	COG2154	pterin-4-alpha-carbinolamine dehydratase
PSJM300_RS16355	COG2819	hydrolase of the alpha beta superfamily
PSJM300_RS16365	COG0733	neurotransmitter:sodium symporter activity
PSJM300_RS16370	COG0625	glutathione transferase activity
PSJM300_RS16390	COG1522	sequence-specific DNA binding
PSJM300_RS16405	COG1028	Short-chain dehydrogenase reductase Sdr
PSJM300_RS16415	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
PSJM300_RS16420	COG0564	pseudouridine synthase activity
PSJM300_RS16425	COG0028	Belongs to the TPP enzyme family
PSJM300_RS16440	COG3212	peptidase
PSJM300_RS16460	COG0420	3'-5' exonuclease activity
PSJM300_RS16475	COG3385	transposase activity
PSJM300_RS16485	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
PSJM300_RS16490	COG2863	cytochrome
PSJM300_RS16495	COG1607	acyl-coa hydrolase
PSJM300_RS16500	COG2824	Alkylphosphonate utilization operon protein PhnA
PSJM300_RS16510	COG1166	arginine decarboxylase activity
PSJM300_RS16515	COG0023	Translation Initiation Factor
PSJM300_RS16560	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
PSJM300_RS16565	COG1047	Peptidyl-prolyl cis-trans
PSJM300_RS16575	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
PSJM300_RS16580	COG0196	riboflavin kinase activity
PSJM300_RS16590	COG0268	Binds directly to 16S ribosomal RNA
PSJM300_RS16595	COG3045	CreA protein
PSJM300_RS16600	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
PSJM300_RS16605	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
PSJM300_RS16610	COG0211	Belongs to the bacterial ribosomal protein bL27 family
PSJM300_RS16615	COG0261	This protein binds to 23S rRNA in the presence of protein L20
PSJM300_RS16620	COG0142	geranyltranstransferase activity
PSJM300_RS16630	COG0545	Peptidyl-prolyl cis-trans isomerase
PSJM300_RS16635	COG2862	Uncharacterized protein family, UPF0114
PSJM300_RS16645	COG1067	ATP-dependent peptidase activity
PSJM300_RS16660	COG2010	Cytochrome c
PSJM300_RS16665	COG3256	nitric oxide reductase
PSJM300_RS16670	COG0714	Associated with various cellular activities
PSJM300_RS16680	COG1970	mechanosensitive ion channel activity
PSJM300_RS16705	COG2020	methyltransferase activity
PSJM300_RS16710	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
PSJM300_RS16720	COG0488	(ABC) transporter
PSJM300_RS16725	COG3265	gluconokinase activity
PSJM300_RS16740	COG2813	Specifically methylates the guanine in position
PSJM300_RS16760	COG1529	Aldehyde oxidase and xanthine dehydrogenase
PSJM300_RS16765	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
PSJM300_RS16770	COG2080	2 iron, 2 sulfur cluster binding
PSJM300_RS16775	COG2252	PERMEase
PSJM300_RS16780	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
PSJM300_RS16785	COG3038	cytochrome b561
PSJM300_RS16805	COG2321	neutral zinc metallopeptidase
PSJM300_RS16845	COG0848	biopolymer transport protein
PSJM300_RS16850	COG0811	peptide transport
PSJM300_RS16855	COG0811	peptide transport
PSJM300_RS16865	COG3047	cAMP biosynthetic process
PSJM300_RS16885	COG2814	Major facilitator Superfamily
PSJM300_RS16895	COG0753	catalase activity
PSJM300_RS16900	COG0203	ribosomal protein L17
PSJM300_RS16905	COG0202	RNA polymerase activity
PSJM300_RS16910	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
PSJM300_RS16915	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
PSJM300_RS16920	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
PSJM300_RS16925	COG0257	Belongs to the bacterial ribosomal protein bL36 family
PSJM300_RS16935	COG0200	Binds to the 23S rRNA
PSJM300_RS16940	COG1841	ribosomal large subunit assembly
PSJM300_RS16945	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
PSJM300_RS16955	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
PSJM300_RS16960	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
PSJM300_RS16965	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
PSJM300_RS16970	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
PSJM300_RS16975	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
PSJM300_RS16980	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
PSJM300_RS16985	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
PSJM300_RS16990	COG0255	Belongs to the universal ribosomal protein uL29 family
PSJM300_RS16995	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
PSJM300_RS17000	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
PSJM300_RS17005	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
PSJM300_RS17010	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
PSJM300_RS17015	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
PSJM300_RS17020	COG0089	rRNA binding
PSJM300_RS17025	COG0088	Forms part of the polypeptide exit tunnel
PSJM300_RS17030	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
PSJM300_RS17035	COG0051	transcription antitermination factor activity, RNA binding
PSJM300_RS17040	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PSJM300_RS17055	COG0049	tRNA binding
PSJM300_RS17060	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
PSJM300_RS17065	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
PSJM300_RS17070	COG0085	RNA polymerase activity
PSJM300_RS17085	COG0081	regulation of translation
PSJM300_RS17090	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
PSJM300_RS17110	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
PSJM300_RS17140	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
PSJM300_RS17140	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
PSJM300_RS17170	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
PSJM300_RS17180	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
PSJM300_RS17200	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
PSJM300_RS17215	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
PSJM300_RS17220	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS17225	COG3706	GGDEF domain
PSJM300_RS17230	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS17250	COG2226	methyltransferase
PSJM300_RS17250	COG1073	alpha beta
PSJM300_RS17255	COG0156	8-amino-7-oxononanoate synthase activity
PSJM300_RS17260	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
PSJM300_RS17270	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
PSJM300_RS17285	COG0495	leucyl-tRNA aminoacylation
PSJM300_RS17305	COG2951	lytic endotransglycosylase activity
PSJM300_RS17315	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
PSJM300_RS17320	COG0321	lipoyl(octanoyl) transferase activity
PSJM300_RS17330	COG1686	Belongs to the peptidase S11 family
PSJM300_RS17340	COG2951	lytic endotransglycosylase activity
PSJM300_RS17345	COG0772	Belongs to the SEDS family
PSJM300_RS17350	COG0768	penicillin binding
PSJM300_RS17355	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
PSJM300_RS17365	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
PSJM300_RS17370	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
PSJM300_RS17375	COG0586	Pfam SNARE associated Golgi protein
PSJM300_RS17385	COG1346	cytolysis
PSJM300_RS17405	COG0702	epimerase
PSJM300_RS17410	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
PSJM300_RS17415	COG1162	GTPase activity
PSJM300_RS17425	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
PSJM300_RS17440	COG0688	phosphatidylethanolamine metabolic process
PSJM300_RS17450	COG2199	diguanylate cyclase activity
PSJM300_RS17450	COG2200	EAL domain
PSJM300_RS17450	COG2203	Gaf domain
PSJM300_RS17455	COG1063	alcohol dehydrogenase
PSJM300_RS17460	COG3830	Belongs to the UPF0237 family
PSJM300_RS17460	COG0560	Phosphoserine phosphatase
PSJM300_RS17480	COG3577	Aspartyl protease
PSJM300_RS17495	COG3150	esterase
PSJM300_RS17505	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
PSJM300_RS17510	COG1561	YicC-like family, N-terminal region
PSJM300_RS17520	COG1758	RNA polymerase activity
PSJM300_RS17525	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
PSJM300_RS17550	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
PSJM300_RS17560	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
PSJM300_RS17565	COG1704	LemA family
PSJM300_RS17570	COG0583	DNA-binding transcription factor activity
PSJM300_RS17575	COG0604	alcohol dehydrogenase
PSJM300_RS17585	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS17590	COG0583	DNA-binding transcription factor activity
PSJM300_RS17610	COG1773	rubredoxin
PSJM300_RS17615	COG1620	l-lactate permease
PSJM300_RS17620	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
PSJM300_RS17625	COG3193	protein, possibly involved in utilization of glycolate and propanediol
PSJM300_RS17630	COG0247	lactate metabolic process
PSJM300_RS17635	COG0277	FAD linked oxidase domain protein
PSJM300_RS17640	COG0277	FAD linked oxidase domain protein
PSJM300_RS17645	COG2186	Transcriptional regulator
PSJM300_RS17655	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
PSJM300_RS17660	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
PSJM300_RS17665	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
PSJM300_RS17670	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
PSJM300_RS17685	COG1253	flavin adenine dinucleotide binding
PSJM300_RS17690	COG0739	heme binding
PSJM300_RS17710	COG0411	ABC transporter
PSJM300_RS17720	COG0559	Belongs to the binding-protein-dependent transport system permease family
PSJM300_RS17730	COG1192	Involved in chromosome partitioning
PSJM300_RS17735	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
PSJM300_RS17740	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
PSJM300_RS17745	COG0730	response to heat
PSJM300_RS17760	COG0494	nUDIX hydrolase
PSJM300_RS17780	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
PSJM300_RS17785	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
PSJM300_RS17795	COG1538	Outer membrane efflux protein
PSJM300_RS17800	COG0577	efflux transmembrane transporter activity
PSJM300_RS17800	COG1136	(ABC) transporter
PSJM300_RS17805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
PSJM300_RS17810	COG3204	pilus organization
PSJM300_RS17820	COG0179	Fumarylacetoacetate (FAA) hydrolase
PSJM300_RS17825	COG0277	FAD linked oxidase domain protein
PSJM300_RS17830	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
PSJM300_RS17840	COG2197	response regulator
PSJM300_RS17845	COG4807	Protein conserved in bacteria
PSJM300_RS17900	COG1217	gtp-binding protein TYPA
PSJM300_RS17905	COG0301	tRNA thio-modification
PSJM300_RS17905	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
PSJM300_RS17925	COG3852	Histidine kinase
PSJM300_RS17945	COG0243	molybdopterin cofactor binding
PSJM300_RS17955	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
PSJM300_RS17965	COG2226	methyltransferase
PSJM300_RS17975	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
PSJM300_RS17980	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
PSJM300_RS17985	COG0140	phosphoribosyl-ATP diphosphatase activity
PSJM300_RS17990	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PSJM300_RS17995	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
PSJM300_RS18015	COG1490	D-aminoacyl-tRNA deacylase activity
PSJM300_RS18075	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
PSJM300_RS18095	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
PSJM300_RS18105	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
PSJM300_RS18110	COG0058	SHG alpha-glucan phosphorylase activity
PSJM300_RS18130	COG0494	nUDIX hydrolase
PSJM300_RS18135	COG1011	Hydrolase
PSJM300_RS18150	COG0700	Nucleoside recognition
PSJM300_RS18170	COG2204	response regulator
PSJM300_RS18175	COG5002	protein histidine kinase activity
PSJM300_RS18180	COG3023	N-Acetylmuramoyl-L-alanine amidase
PSJM300_RS18205	COG0218	Necessary for normal cell division and for the maintenance of normal septation
PSJM300_RS18210	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PSJM300_RS18210	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
PSJM300_RS18225	COG1178	ABC-type Fe3 transport system permease component
PSJM300_RS18235	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PSJM300_RS18245	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
PSJM300_RS18250	COG0006	proline dipeptidase activity
PSJM300_RS18255	COG3079	Belongs to the UPF0149 family
PSJM300_RS18270	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
PSJM300_RS18290	COG0604	alcohol dehydrogenase
PSJM300_RS18295	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
PSJM300_RS18310	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
PSJM300_RS18315	COG4942	peptidase
PSJM300_RS18320	COG0793	Belongs to the peptidase S41A family
PSJM300_RS18325	COG2861	carbohydrate metabolic process
PSJM300_RS18340	COG0107	imidazoleglycerol-phosphate synthase activity
PSJM300_RS18345	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
PSJM300_RS18360	COG0131	Imidazoleglycerol-phosphate dehydratase
PSJM300_RS18370	COG2982	Protein involved in outer membrane biogenesis
PSJM300_RS18375	COG1194	a g-specific adenine glycosylase
PSJM300_RS18380	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
PSJM300_RS18405	COG0517	IMP dehydrogenase activity
PSJM300_RS18420	COG0584	glycerophosphoryl diester phosphodiesterase
PSJM300_RS18435	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PSJM300_RS18440	COG0704	Plays a role in the regulation of phosphate uptake
PSJM300_RS18445	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
PSJM300_RS18450	COG0581	inorganic phosphate transmembrane transporter activity
PSJM300_RS18480	COG1283	sodium-dependent phosphate transmembrane transporter activity
PSJM300_RS18490	COG2358	TRAP transporter, solute receptor (TAXI family
PSJM300_RS18505	COG0824	Thioesterase
PSJM300_RS18510	COG1454	alcohol dehydrogenase
PSJM300_RS18515	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS18520	COG1024	Enoyl-CoA hydratase
PSJM300_RS18520	COG1250	3-hydroxyacyl-CoA dehydrogenase
PSJM300_RS18535	COG2323	membrane
PSJM300_RS18540	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
PSJM300_RS18555	COG0667	Aldo Keto reductase
PSJM300_RS18560	COG0778	Nitroreductase
PSJM300_RS18575	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
PSJM300_RS18580	COG4067	protein conserved in archaea
PSJM300_RS18580	COG0189	ligase activity
PSJM300_RS18585	COG0189	ligase activity
PSJM300_RS18600	COG2183	response to ionizing radiation
PSJM300_RS18610	COG2918	glutathione biosynthetic process
PSJM300_RS18625	COG0306	phosphate transporter
PSJM300_RS18630	COG1392	Phosphate transport regulator
PSJM300_RS18640	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
PSJM300_RS18655	COG0784	Response regulator, receiver
PSJM300_RS18655	COG4191	Histidine kinase
PSJM300_RS18665	COG1764	response to oxidative stress
PSJM300_RS18680	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
PSJM300_RS18685	COG0735	belongs to the Fur family
PSJM300_RS18690	COG1121	(ABC) transporter
PSJM300_RS18695	COG1108	ABC-type Mn2 Zn2 transport systems permease components
PSJM300_RS18700	COG1451	nucleotide metabolic process
PSJM300_RS18715	COG2011	ABC-type metal ion transport system permease component
PSJM300_RS18720	COG1464	Belongs to the NlpA lipoprotein family
PSJM300_RS18730	COG1177	transmembrane transport
PSJM300_RS18735	COG1176	ABC-type spermidine putrescine transport system, permease component I
PSJM300_RS18740	COG3842	ATPase activity
PSJM300_RS18760	COG0174	glutamine synthetase
PSJM300_RS18765	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
PSJM300_RS18770	COG0174	glutamine synthetase
PSJM300_RS18780	COG2957	Belongs to the agmatine deiminase family
PSJM300_RS18790	COG2199	diguanylate cyclase activity
PSJM300_RS18800	COG4191	Histidine kinase
PSJM300_RS18810	COG5002	protein histidine kinase activity
PSJM300_RS18815	COG0745	RESPONSE REGULATOR receiver
PSJM300_RS18825	COG1012	belongs to the aldehyde dehydrogenase family
PSJM300_RS18830	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
PSJM300_RS18835	COG0267	Belongs to the bacterial ribosomal protein bL33 family
PSJM300_RS18840	COG0227	Belongs to the bacterial ribosomal protein bL28 family
PSJM300_RS18860	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS18865	COG1960	acyl-CoA dehydrogenase activity
PSJM300_RS18870	COG1250	3-hydroxyacyl-CoA dehydrogenase
PSJM300_RS18870	COG1024	Enoyl-CoA hydratase
PSJM300_RS18885	COG3909	cytochrome
PSJM300_RS18890	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
PSJM300_RS18900	COG0252	asparaginase activity
PSJM300_RS18905	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
PSJM300_RS18910	COG1074	ATP-dependent DNA helicase activity
PSJM300_RS18915	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
PSJM300_RS18925	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
PSJM300_RS18940	COG1966	Carbon starvation protein
PSJM300_RS18945	COG0840	transmembrane signaling receptor activity
PSJM300_RS18960	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
PSJM300_RS18980	COG3052	prosthetic group binding
PSJM300_RS18985	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
PSJM300_RS19015	COG1238	metal cluster binding
PSJM300_RS19020	COG4221	oxidoreductase activity
PSJM300_RS19030	COG2358	TRAP transporter, solute receptor (TAXI family
PSJM300_RS19060	COG1595	DNA-templated transcription, initiation
PSJM300_RS19070	COG0523	cobalamin synthesis protein
PSJM300_RS19090	COG4208	sulfate ABC transporter
PSJM300_RS19100	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
PSJM300_RS19105	COG5583	Uncharacterized small protein (DUF2292)
PSJM300_RS19130	COG0159	tryptophan synthase activity
PSJM300_RS19165	COG4771	TonB-dependent receptor
PSJM300_RS19170	COG0450	alkyl hydroperoxide reductase
PSJM300_RS19175	COG0431	NADPH-dependent FMN reductase
PSJM300_RS19180	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
PSJM300_RS19185	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
PSJM300_RS19190	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
PSJM300_RS19210	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
PSJM300_RS19235	COG4206	TonB-dependent receptor
PSJM300_RS19250	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
PSJM300_RS19255	COG1120	ATPase activity
PSJM300_RS19260	COG0500	methyltransferase
PSJM300_RS19265	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
PSJM300_RS19270	COG1349	DNA-binding transcription factor activity
PSJM300_RS19275	COG0840	transmembrane signaling receptor activity
PSJM300_RS19280	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
PSJM300_RS19285	COG0355	proton-transporting ATP synthase activity, rotational mechanism
PSJM300_RS19290	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
PSJM300_RS19295	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
PSJM300_RS19300	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
PSJM300_RS19305	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
PSJM300_RS19310	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
PSJM300_RS19320	COG0356	it plays a direct role in the translocation of protons across the membrane
PSJM300_RS19325	COG3312	ion transport
PSJM300_RS19330	COG1475	DNA binding
PSJM300_RS19335	COG1192	Involved in chromosome partitioning
PSJM300_RS19340	COG0357	Ribosomal RNA small subunit methyltransferase G
PSJM300_RS19345	COG0445	tRNA wobble uridine modification
PSJM300_RS19350	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
PSJM300_RS19355	COG0706	membrane insertase activity
PSJM300_RS19360	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
PSJM300_RS19365	COG0594	ribonuclease P activity
PSJM300_RS19370	COG0230	Belongs to the bacterial ribosomal protein bL34 family
PSJM300_RS19410	COG0438	transferase activity, transferring glycosyl groups
PSJM300_RS19410	COG1216	Glycosyl transferase, family 2
PSJM300_RS19555	COG0653	protein targeting
PSJM300_RS19655	COG1280	lysine exporter protein (LysE YggA)
PSJM300_RS20315	COG0784	Response regulator, receiver
PSJM300_RS20315	COG4191	Histidine kinase
PSJM300_RS20325	COG2124	cytochrome p450
PSJM300_RS20365	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing