locus-tag	class	description
NDR94_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NDR94_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NDR94_RS00030	COG3706	GGDEF domain
NDR94_RS00045	COG0751	glycine-tRNA ligase activity
NDR94_RS00055	COG2818	Glycosylase
NDR94_RS00075	COG1126	abc transporter atp-binding protein
NDR94_RS00080	COG0765	amino acid transport
NDR94_RS00085	COG0765	amino acid transport
NDR94_RS00090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NDR94_RS00095	COG0569	domain protein
NDR94_RS00100	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NDR94_RS00105	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
NDR94_RS00110	COG0242	peptide deformylase activity
NDR94_RS00120	COG0758	DNA mediated transformation
NDR94_RS00125	COG0009	L-threonylcarbamoyladenylate synthase
NDR94_RS00135	COG0408	coproporphyrinogen oxidase activity
NDR94_RS00140	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
NDR94_RS00155	COG1686	Belongs to the peptidase S11 family
NDR94_RS00195	COG2011	ABC-type metal ion transport system permease component
NDR94_RS00210	COG1451	nucleotide metabolic process
NDR94_RS00215	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NDR94_RS00220	COG1121	(ABC) transporter
NDR94_RS00225	COG0735	belongs to the Fur family
NDR94_RS00235	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
NDR94_RS00240	COG1012	belongs to the aldehyde dehydrogenase family
NDR94_RS00260	COG0745	RESPONSE REGULATOR receiver
NDR94_RS00265	COG5002	protein histidine kinase activity
NDR94_RS00275	COG0745	RESPONSE REGULATOR receiver
NDR94_RS00280	COG5002	protein histidine kinase activity
NDR94_RS00285	COG0745	RESPONSE REGULATOR receiver
NDR94_RS00290	COG4191	Histidine kinase
NDR94_RS00300	COG3706	GGDEF domain
NDR94_RS00310	COG2957	Belongs to the agmatine deiminase family
NDR94_RS00325	COG0174	glutamine synthetase
NDR94_RS00330	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
NDR94_RS00335	COG0174	glutamine synthetase
NDR94_RS00360	COG3842	ATPase activity
NDR94_RS00365	COG1176	ABC-type spermidine putrescine transport system, permease component I
NDR94_RS00370	COG1177	transmembrane transport
NDR94_RS00380	COG0596	Alpha beta hydrolase
NDR94_RS00440	COG0842	Transport permease protein
NDR94_RS00445	COG1129	ABC transporter
NDR94_RS00445	COG0842	Transport permease protein
NDR94_RS00450	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDR94_RS00465	COG1127	ABC transporter
NDR94_RS00470	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NDR94_RS00475	COG0753	catalase activity
NDR94_RS00480	COG2010	Cytochrome c
NDR94_RS00490	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
NDR94_RS00495	COG3909	cytochrome
NDR94_RS00500	COG1012	belongs to the aldehyde dehydrogenase family
NDR94_RS00510	COG1024	Enoyl-CoA hydratase
NDR94_RS00510	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDR94_RS00515	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS00525	COG2814	Major facilitator Superfamily
NDR94_RS00545	COG0318	PFAM AMP-dependent synthetase and ligase
NDR94_RS00550	COG0227	Belongs to the bacterial ribosomal protein bL28 family
NDR94_RS00555	COG0267	Belongs to the bacterial ribosomal protein bL33 family
NDR94_RS00570	COG1611	Belongs to the LOG family
NDR94_RS00615	COG2207	Transcriptional regulator
NDR94_RS00625	COG2249	NAD(P)H dehydrogenase (quinone) activity
NDR94_RS00700	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NDR94_RS00705	COG0583	DNA-binding transcription factor activity
NDR94_RS00745	COG2706	6-phosphogluconolactonase activity
NDR94_RS00750	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS00755	COG0784	Response regulator, receiver
NDR94_RS00755	COG4191	Histidine kinase
NDR94_RS00780	COG3795	YCII-related domain
NDR94_RS00785	COG4941	Belongs to the sigma-70 factor family
NDR94_RS00790	COG2204	response regulator
NDR94_RS00795	COG4191	Histidine kinase
NDR94_RS00805	COG0659	secondary active sulfate transmembrane transporter activity
NDR94_RS00810	COG0589	response to stress
NDR94_RS00815	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NDR94_RS00825	COG0509	glycine decarboxylation via glycine cleavage system
NDR94_RS00835	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS00845	COG3276	selenocysteine insertion sequence binding
NDR94_RS00850	COG1921	L-seryl-tRNASec selenium transferase activity
NDR94_RS00855	COG3058	Necessary for formate dehydrogenase activity
NDR94_RS00860	COG2864	formate dehydrogenase
NDR94_RS00865	COG0437	4 iron, 4 sulfur cluster binding
NDR94_RS00880	COG1764	response to oxidative stress
NDR94_RS00895	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
NDR94_RS00900	COG0210	DNA helicase
NDR94_RS00910	COG0826	peptidase U32
NDR94_RS00915	COG2841	Protein conserved in bacteria
NDR94_RS00920	COG0527	aspartate kinase activity
NDR94_RS00925	COG5285	phytanoyl-CoA dioxygenase
NDR94_RS00930	COG1917	Cupin 2, conserved barrel domain protein
NDR94_RS00935	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NDR94_RS00945	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NDR94_RS00950	COG0837	glucose binding
NDR94_RS00950	COG1737	Transcriptional regulator
NDR94_RS00960	COG0583	DNA-binding transcription factor activity
NDR94_RS00965	COG0439	Biotin carboxylase
NDR94_RS00970	COG0511	ligase activity, forming carbon-carbon bonds
NDR94_RS00970	COG5016	pyruvate
NDR94_RS00985	COG2066	Belongs to the glutaminase family
NDR94_RS01000	COG0252	asparaginase activity
NDR94_RS01005	COG1115	amino acid carrier protein
NDR94_RS01015	COG1301	dicarboxylic acid transport
NDR94_RS01025	COG0583	DNA-binding transcription factor activity
NDR94_RS01035	COG3185	4-Hydroxyphenylpyruvate dioxygenase
NDR94_RS01035	COG1082	Xylose isomerase domain protein TIM barrel
NDR94_RS01040	COG2205	protein histidine kinase activity
NDR94_RS01070	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NDR94_RS01080	COG4208	sulfate ABC transporter
NDR94_RS01090	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
NDR94_RS01095	COG5583	Uncharacterized small protein (DUF2292)
NDR94_RS01105	COG0450	alkyl hydroperoxide reductase
NDR94_RS01125	COG2015	COG2015, Alkyl sulfatase and related hydrolases
NDR94_RS01170	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NDR94_RS01205	COG0701	Predicted permease
NDR94_RS01215	COG0798	PFAM Bile acid sodium symporter
NDR94_RS01240	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NDR94_RS01245	COG0640	Transcriptional regulator
NDR94_RS01280	COG5642	Protein of unknown function (DUF2384)
NDR94_RS01335	COG2826	transposase and inactivated derivatives, IS30 family
NDR94_RS01355	COG0582	viral genome integration into host DNA
NDR94_RS01380	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
NDR94_RS01385	COG1764	response to oxidative stress
NDR94_RS01400	COG2989	Protein conserved in bacteria
NDR94_RS01410	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NDR94_RS01420	COG1392	Phosphate transport regulator
NDR94_RS01425	COG0306	phosphate transporter
NDR94_RS01440	COG2918	glutathione biosynthetic process
NDR94_RS01450	COG2183	response to ionizing radiation
NDR94_RS01455	COG3118	belongs to the thioredoxin family
NDR94_RS01455	COG0457	Tetratricopeptide repeat
NDR94_RS01460	COG1215	transferase activity, transferring glycosyl groups
NDR94_RS01465	COG1215	transferase activity, transferring glycosyl groups
NDR94_RS01470	COG1192	Involved in chromosome partitioning
NDR94_RS01510	COG0189	ligase activity
NDR94_RS01515	COG0189	ligase activity
NDR94_RS01515	COG4067	protein conserved in archaea
NDR94_RS01520	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
NDR94_RS01530	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
NDR94_RS01540	COG0778	Nitroreductase
NDR94_RS01550	COG0514	ATP-dependent DNA helicase (RecQ)
NDR94_RS01555	COG0840	transmembrane signaling receptor activity
NDR94_RS01570	COG0667	Aldo Keto reductase
NDR94_RS01595	COG0784	Response regulator, receiver
NDR94_RS01595	COG4191	Histidine kinase
NDR94_RS01600	COG2205	protein histidine kinase activity
NDR94_RS01610	COG2172	sigma factor antagonist activity
NDR94_RS01615	COG1366	Belongs to the anti-sigma-factor antagonist family
NDR94_RS01620	COG1366	Belongs to the anti-sigma-factor antagonist family
NDR94_RS01630	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDR94_RS01630	COG1024	Enoyl-CoA hydratase
NDR94_RS01635	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS01640	COG1454	alcohol dehydrogenase
NDR94_RS01655	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NDR94_RS01660	COG4191	Histidine kinase
NDR94_RS01660	COG0784	Response regulator, receiver
NDR94_RS01665	COG1011	Hydrolase
NDR94_RS01670	COG0494	nUDIX hydrolase
NDR94_RS01675	COG1218	3'(2'),5'-bisphosphate nucleotidase
NDR94_RS01690	COG0058	SHG alpha-glucan phosphorylase activity
NDR94_RS01695	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
NDR94_RS01725	COG1490	D-aminoacyl-tRNA deacylase activity
NDR94_RS01745	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NDR94_RS01750	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NDR94_RS01755	COG0140	phosphoribosyl-ATP diphosphatase activity
NDR94_RS01760	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NDR94_RS01765	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
NDR94_RS01775	COG2226	methyltransferase
NDR94_RS01785	COG0840	transmembrane signaling receptor activity
NDR94_RS01795	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
NDR94_RS01805	COG0243	molybdopterin cofactor binding
NDR94_RS01825	COG3852	Histidine kinase
NDR94_RS01845	COG0301	tRNA thio-modification
NDR94_RS01845	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NDR94_RS01850	COG1217	gtp-binding protein TYPA
NDR94_RS01860	COG3493	citrate carrier protein
NDR94_RS01865	COG3290	protein histidine kinase activity
NDR94_RS01870	COG4565	transcriptional regulatory protein
NDR94_RS01895	COG2204	response regulator
NDR94_RS01900	COG4807	Protein conserved in bacteria
NDR94_RS01925	COG5001	Diguanylate cyclase
NDR94_RS01930	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NDR94_RS01960	COG1966	Carbon starvation protein
NDR94_RS01975	COG1320	monovalent cation:proton antiporter activity
NDR94_RS01995	COG0651	ATP synthesis coupled electron transport
NDR94_RS02000	COG0651	ATP synthesis coupled electron transport
NDR94_RS02045	COG2197	response regulator
NDR94_RS02070	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NDR94_RS02075	COG0277	FAD linked oxidase domain protein
NDR94_RS02080	COG0179	Fumarylacetoacetate (FAA) hydrolase
NDR94_RS02100	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
NDR94_RS02105	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
NDR94_RS02125	COG0494	nUDIX hydrolase
NDR94_RS02140	COG0730	response to heat
NDR94_RS02145	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
NDR94_RS02150	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
NDR94_RS02155	COG1192	Involved in chromosome partitioning
NDR94_RS02165	COG0559	Belongs to the binding-protein-dependent transport system permease family
NDR94_RS02175	COG0411	ABC transporter
NDR94_RS02195	COG0739	heme binding
NDR94_RS02205	COG1253	flavin adenine dinucleotide binding
NDR94_RS02220	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
NDR94_RS02230	COG2186	Transcriptional regulator
NDR94_RS02235	COG0277	FAD linked oxidase domain protein
NDR94_RS02240	COG0277	FAD linked oxidase domain protein
NDR94_RS02245	COG0247	lactate metabolic process
NDR94_RS02250	COG3193	protein, possibly involved in utilization of glycolate and propanediol
NDR94_RS02255	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NDR94_RS02260	COG1620	l-lactate permease
NDR94_RS02285	COG0583	DNA-binding transcription factor activity
NDR94_RS02290	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS02300	COG0604	alcohol dehydrogenase
NDR94_RS02310	COG1704	LemA family
NDR94_RS02315	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
NDR94_RS02335	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NDR94_RS02355	COG2080	2 iron, 2 sulfur cluster binding
NDR94_RS02375	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NDR94_RS02380	COG1758	RNA polymerase activity
NDR94_RS02390	COG1561	YicC-like family, N-terminal region
NDR94_RS02395	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NDR94_RS02405	COG0708	Exodeoxyribonuclease III
NDR94_RS02410	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NDR94_RS02425	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NDR94_RS02435	COG0756	dUTP diphosphatase activity
NDR94_RS02440	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
NDR94_RS02445	COG2003	Belongs to the UPF0758 family
NDR94_RS02460	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDR94_RS02480	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDR94_RS02485	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDR94_RS02495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDR94_RS02500	COG0251	oxidation-reduction process
NDR94_RS02520	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
NDR94_RS02535	COG0366	Alpha amylase catalytic
NDR94_RS02540	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NDR94_RS02550	COG1454	alcohol dehydrogenase
NDR94_RS02560	COG1414	Transcriptional regulator
NDR94_RS02565	COG1272	protein, Hemolysin III
NDR94_RS02570	COG0210	DNA helicase
NDR94_RS02580	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NDR94_RS02585	COG0606	chelatase, subunit chli
NDR94_RS02595	COG0347	Belongs to the P(II) protein family
NDR94_RS02600	COG0004	ammonium transporteR
NDR94_RS02605	COG0004	ammonium transporteR
NDR94_RS02610	COG0432	Pfam Uncharacterised protein family UPF0047
NDR94_RS02625	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NDR94_RS02635	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NDR94_RS02650	COG1965	Belongs to the frataxin family
NDR94_RS02655	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NDR94_RS02690	COG0165	Argininosuccinate lyase
NDR94_RS02695	COG3275	phosphorelay sensor kinase activity
NDR94_RS02705	COG0181	hydroxymethylbilane synthase activity
NDR94_RS02725	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
NDR94_RS02745	COG0488	(ABC) transporter
NDR94_RS02755	COG0861	Integral membrane protein TerC family
NDR94_RS02760	COG1280	lysine exporter protein (LysE YggA)
NDR94_RS02765	COG1671	Belongs to the UPF0178 family
NDR94_RS02780	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
NDR94_RS02790	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NDR94_RS02795	COG0248	Ppx GppA phosphatase
NDR94_RS02810	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
NDR94_RS02825	COG0018	arginyl-trna synthetase
NDR94_RS02830	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NDR94_RS02835	COG0254	rRNA binding
NDR94_RS02845	COG0281	malic enzyme
NDR94_RS02890	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
NDR94_RS02895	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
NDR94_RS02905	COG0067	glutamate synthase
NDR94_RS02905	COG0069	glutamate synthase activity
NDR94_RS02905	COG0070	glutamate synthase
NDR94_RS02910	COG0493	'glutamate synthase
NDR94_RS02920	COG2814	Major facilitator Superfamily
NDR94_RS02925	COG0583	DNA-binding transcription factor activity
NDR94_RS02935	COG3118	belongs to the thioredoxin family
NDR94_RS02940	COG2873	o-acetylhomoserine
NDR94_RS02945	COG3273	potassium ion transport
NDR94_RS02945	COG0471	metal ion transport
NDR94_RS03010	COG4584	PFAM Integrase catalytic
NDR94_RS03015	COG1484	DNA-dependent DNA replication
NDR94_RS03020	COG1643	Atp-dependent helicase
NDR94_RS03025	COG1643	Atp-dependent helicase
NDR94_RS03065	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NDR94_RS03120	COG0318	PFAM AMP-dependent synthetase and ligase
NDR94_RS03130	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS03140	COG1024	Enoyl-CoA hydratase
NDR94_RS03145	COG1012	belongs to the aldehyde dehydrogenase family
NDR94_RS03155	COG1804	L-carnitine dehydratase bile acid-inducible protein F
NDR94_RS03170	COG2015	COG2015, Alkyl sulfatase and related hydrolases
NDR94_RS03185	COG4447	cellulose binding
NDR94_RS03230	COG3550	peptidyl-serine autophosphorylation
NDR94_RS03285	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
NDR94_RS03305	COG4372	Transposase
NDR94_RS03360	COG4372	Transposase
NDR94_RS03380	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
NDR94_RS03395	COG4372	Transposase
NDR94_RS03415	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
NDR94_RS03430	COG4372	Transposase
NDR94_RS03490	COG3344	reverse transcriptase
NDR94_RS03520	COG0789	Transcriptional regulator
NDR94_RS03590	COG2235	arginine
NDR94_RS03605	COG1538	Outer membrane efflux protein
NDR94_RS03610	COG0842	Transport permease protein
NDR94_RS03615	COG0842	Transport permease protein
NDR94_RS03615	COG1129	ABC transporter
NDR94_RS03620	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDR94_RS03625	COG3243	poly(R)-hydroxyalkanoic acid synthase
NDR94_RS03635	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS03645	COG0786	glutamate:sodium symporter activity
NDR94_RS03650	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
NDR94_RS03655	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NDR94_RS03760	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NDR94_RS03765	COG0358	DNA primase activity
NDR94_RS03770	COG0828	Belongs to the bacterial ribosomal protein bS21 family
NDR94_RS03775	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
NDR94_RS03780	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
NDR94_RS03795	COG0617	tRNA 3'-terminal CCA addition
NDR94_RS03800	COG2719	SpoVR family
NDR94_RS03805	COG2718	Belongs to the UPF0229 family
NDR94_RS03810	COG2766	serine protein kinase
NDR94_RS03815	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NDR94_RS03820	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NDR94_RS03825	COG2967	ApaG domain
NDR94_RS03830	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NDR94_RS03835	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NDR94_RS03840	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NDR94_RS03845	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
NDR94_RS03855	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
NDR94_RS03860	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
NDR94_RS03875	COG2197	response regulator
NDR94_RS03880	COG3842	ATPase activity
NDR94_RS03890	COG1176	ABC-type spermidine putrescine transport system, permease component I
NDR94_RS03895	COG1177	transmembrane transport
NDR94_RS03905	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NDR94_RS03910	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NDR94_RS03915	COG0546	phosphoglycolate phosphatase activity
NDR94_RS03925	COG0512	Glutamine amidotransferase of anthranilate synthase
NDR94_RS03930	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NDR94_RS03935	COG0134	indole-3-glycerol-phosphate synthase activity
NDR94_RS03945	COG1765	OsmC-like protein
NDR94_RS03950	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
NDR94_RS03955	COG0537	adenosine 5'-monophosphoramidase activity
NDR94_RS03960	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NDR94_RS03970	COG1981	membrane
NDR94_RS03975	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
NDR94_RS03980	COG0316	Belongs to the HesB IscA family
NDR94_RS03985	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
NDR94_RS03990	COG0739	heme binding
NDR94_RS03995	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NDR94_RS04025	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
NDR94_RS04025	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
NDR94_RS04030	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
NDR94_RS04055	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NDR94_RS04075	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
NDR94_RS04080	COG0081	regulation of translation
NDR94_RS04085	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
NDR94_RS04090	COG0222	ribosome binding
NDR94_RS04095	COG0085	RNA polymerase activity
NDR94_RS04100	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NDR94_RS04105	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
NDR94_RS04110	COG0049	tRNA binding
NDR94_RS04115	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NDR94_RS04120	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
NDR94_RS04125	COG0051	transcription antitermination factor activity, RNA binding
NDR94_RS04130	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
NDR94_RS04135	COG0088	Forms part of the polypeptide exit tunnel
NDR94_RS04140	COG0089	rRNA binding
NDR94_RS04145	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NDR94_RS04150	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
NDR94_RS04155	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
NDR94_RS04160	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
NDR94_RS04165	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
NDR94_RS04170	COG0255	Belongs to the universal ribosomal protein uL29 family
NDR94_RS04175	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NDR94_RS04180	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
NDR94_RS04185	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
NDR94_RS04190	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
NDR94_RS04195	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
NDR94_RS04200	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
NDR94_RS04205	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
NDR94_RS04215	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
NDR94_RS04220	COG1841	ribosomal large subunit assembly
NDR94_RS04225	COG0200	Binds to the 23S rRNA
NDR94_RS04235	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NDR94_RS04240	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
NDR94_RS04245	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
NDR94_RS04250	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NDR94_RS04255	COG0202	RNA polymerase activity
NDR94_RS04260	COG0203	ribosomal protein L17
NDR94_RS04275	COG2814	Major facilitator Superfamily
NDR94_RS04290	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NDR94_RS04295	COG3047	cAMP biosynthetic process
NDR94_RS04305	COG0811	peptide transport
NDR94_RS04310	COG0811	peptide transport
NDR94_RS04315	COG0848	biopolymer transport protein
NDR94_RS04340	COG1136	(ABC) transporter
NDR94_RS04355	COG3118	belongs to the thioredoxin family
NDR94_RS04360	COG2391	methyltransferase activity
NDR94_RS04365	COG0425	Belongs to the sulfur carrier protein TusA family
NDR94_RS04375	COG2264	protein methyltransferase activity
NDR94_RS04390	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NDR94_RS04390	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NDR94_RS04405	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
NDR94_RS04410	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NDR94_RS04420	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
NDR94_RS04425	COG3577	Aspartyl protease
NDR94_RS04430	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NDR94_RS04445	COG4206	TonB-dependent receptor
NDR94_RS04455	COG0420	3'-5' exonuclease activity
NDR94_RS04515	COG1040	competence protein
NDR94_RS04520	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
NDR94_RS04525	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS04530	COG2610	gluconate transmembrane transporter activity
NDR94_RS04535	COG2031	fatty acid transporter
NDR94_RS04545	COG1522	sequence-specific DNA binding
NDR94_RS04570	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
NDR94_RS04580	COG0625	glutathione transferase activity
NDR94_RS04585	COG0733	neurotransmitter:sodium symporter activity
NDR94_RS04605	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDR94_RS04605	COG4651	solute:proton antiporter activity
NDR94_RS04610	COG0513	Belongs to the DEAD box helicase family
NDR94_RS04635	COG0123	including yeast histone deacetylase and acetoin utilization protein
NDR94_RS04645	COG1946	Acyl-CoA thioesterase
NDR94_RS04655	COG2321	neutral zinc metallopeptidase
NDR94_RS04680	COG2197	response regulator
NDR94_RS04685	COG3850	Histidine kinase
NDR94_RS04690	COG2223	nitrite transmembrane transporter activity
NDR94_RS04700	COG2223	nitrite transmembrane transporter activity
NDR94_RS04705	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
NDR94_RS04710	COG1140	nitrate reductase beta subunit
NDR94_RS04715	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
NDR94_RS04720	COG2181	nitrate reductase activity
NDR94_RS04735	COG0521	Mo-molybdopterin cofactor biosynthetic process
NDR94_RS04745	COG3038	cytochrome b561
NDR94_RS04795	COG0642	Histidine kinase
NDR94_RS04805	COG3642	lipopolysaccharide core region biosynthetic process
NDR94_RS04815	COG1368	sulfuric ester hydrolase activity
NDR94_RS04820	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NDR94_RS04825	COG2252	PERMEase
NDR94_RS04835	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
NDR94_RS04835	COG3608	succinylglutamate desuccinylase aspartoacylase
NDR94_RS04840	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
NDR94_RS04845	COG2080	2 iron, 2 sulfur cluster binding
NDR94_RS04850	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
NDR94_RS04855	COG1529	Aldehyde oxidase and xanthine dehydrogenase
NDR94_RS04880	COG0789	Transcriptional regulator
NDR94_RS04885	COG2813	Specifically methylates the guanine in position
NDR94_RS04920	COG0488	(ABC) transporter
NDR94_RS04925	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
NDR94_RS04930	COG2020	methyltransferase activity
NDR94_RS04950	COG2841	Protein conserved in bacteria
NDR94_RS04955	COG1970	mechanosensitive ion channel activity
NDR94_RS04965	COG1067	ATP-dependent peptidase activity
NDR94_RS04975	COG2862	Uncharacterized protein family, UPF0114
NDR94_RS04985	COG3046	protein related to deoxyribodipyrimidine photolyase
NDR94_RS04995	COG0545	Peptidyl-prolyl cis-trans isomerase
NDR94_RS05005	COG0142	geranyltranstransferase activity
NDR94_RS05010	COG0261	This protein binds to 23S rRNA in the presence of protein L20
NDR94_RS05015	COG0211	Belongs to the bacterial ribosomal protein bL27 family
NDR94_RS05020	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NDR94_RS05025	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
NDR94_RS05030	COG3045	CreA protein
NDR94_RS05035	COG0268	Binds directly to 16S ribosomal RNA
NDR94_RS05045	COG0196	riboflavin kinase activity
NDR94_RS05050	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
NDR94_RS05055	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
NDR94_RS05060	COG1047	Peptidyl-prolyl cis-trans
NDR94_RS05065	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NDR94_RS05115	COG0023	Translation Initiation Factor
NDR94_RS05120	COG1166	arginine decarboxylase activity
NDR94_RS05130	COG0534	Mate efflux family protein
NDR94_RS05160	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NDR94_RS05175	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NDR94_RS05175	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
NDR94_RS05180	COG1105	Belongs to the carbohydrate kinase PfkB family
NDR94_RS05185	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NDR94_RS05185	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NDR94_RS05185	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
NDR94_RS05190	COG4993	Dehydrogenase
NDR94_RS05200	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
NDR94_RS05205	COG0019	diaminopimelate decarboxylase activity
NDR94_RS05215	COG3128	pkhd-type hydroxylase
NDR94_RS05220	COG4774	siderophore transport
NDR94_RS05225	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NDR94_RS05245	COG4771	TonB-dependent receptor
NDR94_RS05260	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
NDR94_RS05270	COG0739	heme binding
NDR94_RS05285	COG0530	calcium, potassium:sodium antiporter activity
NDR94_RS05300	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NDR94_RS05310	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
NDR94_RS05315	COG1077	Cell shape determining protein MreB Mrl
NDR94_RS05320	COG1792	Involved in formation and maintenance of cell shape
NDR94_RS05340	COG1530	ribonuclease E activity
NDR94_RS05350	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NDR94_RS05355	COG0312	modulator of DNA gyrase
NDR94_RS05365	COG0312	modulator of DNA gyrase
NDR94_RS05370	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NDR94_RS05375	COG1660	Displays ATPase and GTPase activities
NDR94_RS05390	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
NDR94_RS05395	COG1137	ATPase activity
NDR94_RS05410	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NDR94_RS05420	COG1127	ABC transporter
NDR94_RS05425	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NDR94_RS05430	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NDR94_RS05455	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
NDR94_RS05460	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
NDR94_RS05470	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NDR94_RS05475	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NDR94_RS05485	COG0175	sulfate reduction
NDR94_RS05495	COG1943	Transposase
NDR94_RS05520	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
NDR94_RS05525	COG0237	dephospho-CoA kinase activity
NDR94_RS05540	COG0667	Aldo Keto reductase
NDR94_RS05545	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
NDR94_RS05550	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
NDR94_RS05555	COG0723	plastoquinol--plastocyanin reductase activity
NDR94_RS05560	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
NDR94_RS05565	COG2857	Cytochrome c1
NDR94_RS05570	COG0625	glutathione transferase activity
NDR94_RS05575	COG2969	positive regulation of protein catabolic process
NDR94_RS05580	COG2823	Periplasmic or secreted lipoprotein
NDR94_RS05585	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NDR94_RS05590	COG0792	nuclease activity
NDR94_RS05615	COG0275	rRNA processing
NDR94_RS05630	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NDR94_RS05635	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NDR94_RS05640	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NDR94_RS05645	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
NDR94_RS05650	COG0772	Belongs to the SEDS family
NDR94_RS05655	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
NDR94_RS05660	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NDR94_RS05665	COG1181	Belongs to the D-alanine--D-alanine ligase family
NDR94_RS05715	COG1285	pathogenesis
NDR94_RS05740	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS05745	COG0659	secondary active sulfate transmembrane transporter activity
NDR94_RS05805	COG0501	Belongs to the peptidase M48B family
NDR94_RS05815	COG2119	membrane
NDR94_RS05820	COG2813	Specifically methylates the guanine in position
NDR94_RS05825	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NDR94_RS05830	COG1280	lysine exporter protein (LysE YggA)
NDR94_RS05835	COG0318	PFAM AMP-dependent synthetase and ligase
NDR94_RS05840	COG4191	Histidine kinase
NDR94_RS05840	COG0784	Response regulator, receiver
NDR94_RS05845	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDR94_RS05850	COG2885	chlorophyll binding
NDR94_RS05855	COG0784	Response regulator, receiver
NDR94_RS05855	COG2205	protein histidine kinase activity
NDR94_RS05865	COG0204	Acyl-transferase
NDR94_RS05875	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NDR94_RS05885	COG0386	Belongs to the glutathione peroxidase family
NDR94_RS05890	COG1309	transcriptional regulator
NDR94_RS05900	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
NDR94_RS05915	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NDR94_RS05920	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS05960	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDR94_RS05965	COG0693	protein deglycase activity
NDR94_RS05970	COG4628	conserved protein (DUF2132)
NDR94_RS05990	COG0469	pyruvate kinase activity
NDR94_RS06015	COG0714	Associated with various cellular activities
NDR94_RS06040	COG2925	Exonuclease
NDR94_RS06055	COG3344	reverse transcriptase
NDR94_RS06065	COG0788	formyltetrahydrofolate deformylase activity
NDR94_RS06075	COG0433	COG0433 Predicted ATPase
NDR94_RS06090	COG3022	response to hydroperoxide
NDR94_RS06100	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
NDR94_RS06105	COG0315	cyclic pyranopterin monophosphate synthase activity
NDR94_RS06110	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
NDR94_RS06130	COG0400	carboxylic ester hydrolase activity
NDR94_RS06135	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NDR94_RS06140	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
NDR94_RS06140	COG0047	phosphoribosylformylglycinamidine synthase activity
NDR94_RS06175	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
NDR94_RS06180	COG4536	flavin adenine dinucleotide binding
NDR94_RS06185	COG4137	Cytochrome C assembly protein
NDR94_RS06190	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NDR94_RS06195	COG0228	four-way junction DNA binding
NDR94_RS06200	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NDR94_RS06205	COG0336	Belongs to the RNA methyltransferase TrmD family
NDR94_RS06210	COG0335	large ribosomal subunit rRNA binding
NDR94_RS06225	COG3791	Glutathione-dependent formaldehyde-activating
NDR94_RS06240	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NDR94_RS06245	COG0418	dihydroorotase activity
NDR94_RS06255	COG0137	argininosuccinate synthase activity
NDR94_RS06260	COG0346	lactoylglutathione lyase activity
NDR94_RS06270	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NDR94_RS06280	COG4659	FMN binding
NDR94_RS06285	COG4658	electron transport chain
NDR94_RS06295	COG2878	Part of a membrane complex involved in electron transport
NDR94_RS06300	COG4657	Part of a membrane complex involved in electron transport
NDR94_RS06315	COG1024	Enoyl-CoA hydratase
NDR94_RS06325	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
NDR94_RS06340	COG0354	folic acid binding
NDR94_RS06380	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NDR94_RS06385	COG0481	GTPase activity
NDR94_RS06400	COG0571	ribonuclease III activity
NDR94_RS06410	COG1381	Involved in DNA repair and RecF pathway recombination
NDR94_RS06415	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NDR94_RS06425	COG0583	DNA-binding transcription factor activity
NDR94_RS06435	COG0500	methyltransferase
NDR94_RS06440	COG2226	methyltransferase
NDR94_RS06450	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
NDR94_RS06465	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDR94_RS06480	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDR94_RS06490	COG0583	DNA-binding transcription factor activity
NDR94_RS06495	COG3485	protocatechuate 3,4-dioxygenase
NDR94_RS06500	COG3485	protocatechuate 3,4-dioxygenase
NDR94_RS06505	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NDR94_RS06510	COG0679	Auxin Efflux Carrier
NDR94_RS06515	COG1414	Transcriptional regulator
NDR94_RS06520	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
NDR94_RS06525	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
NDR94_RS06540	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDR94_RS06545	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NDR94_RS06565	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDR94_RS06565	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NDR94_RS06570	COG0489	protein tyrosine kinase activity
NDR94_RS06575	COG1278	Cold shock
NDR94_RS06580	COG0717	Belongs to the dCTP deaminase family
NDR94_RS06585	COG3005	denitrification pathway
NDR94_RS06595	COG0243	molybdopterin cofactor binding
NDR94_RS06605	COG4459	periplasmic nitrate reductase
NDR94_RS06610	COG2814	Major facilitator Superfamily
NDR94_RS06635	COG0037	tRNA processing
NDR94_RS06645	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NDR94_RS06650	COG2818	Glycosylase
NDR94_RS06675	COG1294	oxidase, subunit
NDR94_RS06680	COG4890	Cyd operon protein YbgT
NDR94_RS06695	COG0791	NLP P60 protein
NDR94_RS06700	COG0791	NLP P60 protein
NDR94_RS06715	COG4206	TonB-dependent receptor
NDR94_RS06730	COG1797	cobyrinic acid a,c-diamide synthase activity
NDR94_RS06735	COG0778	Nitroreductase
NDR94_RS06745	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
NDR94_RS06755	COG1492	cobalamin metabolic process
NDR94_RS06765	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
NDR94_RS06775	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
NDR94_RS06780	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NDR94_RS06785	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NDR94_RS06825	COG0251	oxidation-reduction process
NDR94_RS06830	COG2207	Transcriptional regulator
NDR94_RS06835	COG2223	nitrite transmembrane transporter activity
NDR94_RS06840	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NDR94_RS06855	COG4657	Part of a membrane complex involved in electron transport
NDR94_RS06910	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
NDR94_RS06975	COG3411	Ferredoxin
NDR94_RS07085	COG2067	long-chain fatty acid transport protein
NDR94_RS07100	COG3100	YcgL domain-containing protein
NDR94_RS07110	COG2983	Belongs to the UPF0260 family
NDR94_RS07125	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NDR94_RS07130	COG0527	aspartate kinase activity
NDR94_RS07135	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
NDR94_RS07160	COG2239	Acts as a magnesium transporter
NDR94_RS07165	COG3630	sodium ion export across plasma membrane
NDR94_RS07170	COG5016	pyruvate
NDR94_RS07170	COG0511	ligase activity, forming carbon-carbon bonds
NDR94_RS07175	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
NDR94_RS07200	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
NDR94_RS07220	COG0784	Response regulator, receiver
NDR94_RS07220	COG0835	chemotaxis
NDR94_RS07225	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NDR94_RS07230	COG1815	bacterial-type flagellum-dependent cell motility
NDR94_RS07245	COG1749	Flagellar hook protein flgE
NDR94_RS07250	COG4787	bacterial-type flagellum-dependent cell motility
NDR94_RS07260	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NDR94_RS07265	COG1706	bacterial-type flagellum-dependent cell motility
NDR94_RS07295	COG3754	Rhamnan synthesis protein F
NDR94_RS07310	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
NDR94_RS07315	COG1555	photosystem II stabilization
NDR94_RS07340	COG2199	diguanylate cyclase activity
NDR94_RS07340	COG2200	EAL domain
NDR94_RS07380	COG4942	peptidase
NDR94_RS07385	COG1362	aminopeptidase activity
NDR94_RS07390	COG0564	pseudouridine synthase activity
NDR94_RS07395	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NDR94_RS07400	COG2894	cell division
NDR94_RS07405	COG0850	regulation of cytokinetic process
NDR94_RS07410	COG1560	Kdo2-lipid A biosynthetic process
NDR94_RS07420	COG2853	Lipoprotein
NDR94_RS07435	COG3162	membrane
NDR94_RS07440	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDR94_RS07460	COG3089	Belongs to the UPF0270 family
NDR94_RS07470	COG1363	Peptidase, m42
NDR94_RS07475	COG0189	ligase activity
NDR94_RS07475	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NDR94_RS07480	COG0367	asparagine synthase
NDR94_RS07490	COG1404	Belongs to the peptidase S8 family
NDR94_RS07490	COG4935	Belongs to the peptidase S8 family
NDR94_RS07500	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NDR94_RS07510	COG4221	oxidoreductase activity
NDR94_RS07520	COG1201	RNA secondary structure unwinding
NDR94_RS07555	COG2133	pyrroloquinoline quinone binding
NDR94_RS07560	COG4993	Dehydrogenase
NDR94_RS07565	COG2996	Protein conserved in bacteria
NDR94_RS07580	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDR94_RS07630	COG0732	type I restriction modification DNA specificity domain
NDR94_RS07660	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NDR94_RS07680	COG4983	Phage plasmid primase, P4 family domain protein
NDR94_RS07705	COG0582	viral genome integration into host DNA
NDR94_RS07760	COG1295	ribonuclease BN
NDR94_RS07765	COG0438	transferase activity, transferring glycosyl groups
NDR94_RS07785	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
NDR94_RS07790	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
NDR94_RS07800	COG1546	Belongs to the CinA family
NDR94_RS07805	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NDR94_RS07810	COG2137	regulation of response to DNA damage stimulus
NDR94_RS07820	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
NDR94_RS07825	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
NDR94_RS07835	COG3148	PFAM DTW domain containing protein
NDR94_RS07840	COG0697	spore germination
NDR94_RS07850	COG0583	DNA-binding transcription factor activity
NDR94_RS07860	COG3012	SEC-C Motif Domain Protein
NDR94_RS07880	COG1199	ATP-dependent helicase activity
NDR94_RS07885	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
NDR94_RS07895	COG0259	pyridoxamine-phosphate oxidase activity
NDR94_RS07910	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NDR94_RS07910	COG2111	Na H antiporter
NDR94_RS07915	COG1006	Multisubunit Na H antiporter MnhC subunit
NDR94_RS07920	COG0651	ATP synthesis coupled electron transport
NDR94_RS07925	COG1863	multisubunit Na H antiporter MnhE subunit
NDR94_RS07930	COG2212	antiporter activity
NDR94_RS07935	COG1320	monovalent cation:proton antiporter activity
NDR94_RS07940	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
NDR94_RS07945	COG0024	Methionine aminopeptidase
NDR94_RS07950	COG0052	Belongs to the universal ribosomal protein uS2 family
NDR94_RS07955	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NDR94_RS07960	COG0528	UMP kinase activity
NDR94_RS07965	COG0233	cytoplasmic translational termination
NDR94_RS07970	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NDR94_RS07980	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
NDR94_RS07990	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NDR94_RS08000	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDR94_RS08005	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NDR94_RS08010	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDR94_RS08015	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDR94_RS08020	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NDR94_RS08030	COG0825	malonyl-CoA metabolic process
NDR94_RS08035	COG0037	tRNA processing
NDR94_RS08040	COG0504	CTP synthase activity
NDR94_RS08045	COG2877	3-deoxy-8-phosphooctulonate synthase activity
NDR94_RS08060	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
NDR94_RS08075	COG0583	DNA-binding transcription factor activity
NDR94_RS08085	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
NDR94_RS08090	COG1902	pentaerythritol trinitrate reductase activity
NDR94_RS08100	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
NDR94_RS08105	COG0585	pseudouridine synthase activity
NDR94_RS08110	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NDR94_RS08115	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
NDR94_RS08170	COG0589	response to stress
NDR94_RS08180	COG0217	transcriptional regulatory protein
NDR94_RS08185	COG2826	transposase and inactivated derivatives, IS30 family
NDR94_RS08200	COG2258	MOSC domain
NDR94_RS08215	COG0004	ammonium transporteR
NDR94_RS08220	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NDR94_RS08265	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NDR94_RS08270	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NDR94_RS08280	COG1283	sodium-dependent phosphate transmembrane transporter activity
NDR94_RS08295	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
NDR94_RS08315	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDR94_RS08335	COG2010	Cytochrome c
NDR94_RS08345	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS08350	COG2814	Major facilitator Superfamily
NDR94_RS08355	COG0826	peptidase U32
NDR94_RS08385	COG0789	Transcriptional regulator
NDR94_RS08415	COG0583	DNA-binding transcription factor activity
NDR94_RS08440	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
NDR94_RS08445	COG2226	methyltransferase
NDR94_RS08460	COG0583	DNA-binding transcription factor activity
NDR94_RS08480	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NDR94_RS08490	COG0745	RESPONSE REGULATOR receiver
NDR94_RS08495	COG2205	protein histidine kinase activity
NDR94_RS08505	COG0668	transmembrane transport
NDR94_RS08550	COG2988	succinylglutamate desuccinylase activity
NDR94_RS08555	COG1131	(ABC) transporter
NDR94_RS08560	COG0842	Transport permease protein
NDR94_RS08565	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NDR94_RS08565	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NDR94_RS08575	COG2853	Lipoprotein
NDR94_RS08585	COG0745	RESPONSE REGULATOR receiver
NDR94_RS08595	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
NDR94_RS08615	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NDR94_RS08650	COG2814	Major facilitator Superfamily
NDR94_RS08655	COG4948	Mandelate Racemase Muconate Lactonizing
NDR94_RS08660	COG4829	muconolactone delta-isomerase
NDR94_RS08665	COG3485	protocatechuate 3,4-dioxygenase
NDR94_RS08670	COG3135	benzoate transporter
NDR94_RS08705	COG4191	Histidine kinase
NDR94_RS08705	COG0784	Response regulator, receiver
NDR94_RS08715	COG0114	fumarate hydratase activity
NDR94_RS08725	COG0271	Belongs to the BolA IbaG family
NDR94_RS08730	COG1054	Belongs to the UPF0176 family
NDR94_RS08745	COG0840	transmembrane signaling receptor activity
NDR94_RS08770	COG0583	DNA-binding transcription factor activity
NDR94_RS08775	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
NDR94_RS08780	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS08790	COG2079	MmgE PrpD family protein
NDR94_RS08800	COG2301	Belongs to the HpcH HpaI aldolase family
NDR94_RS08840	COG4172	Belongs to the ABC transporter superfamily
NDR94_RS08845	COG4239	(ABC) transporter, permease
NDR94_RS08850	COG4174	ABC transporter (Permease)
NDR94_RS08855	COG4166	transmembrane transport
NDR94_RS08885	COG0312	modulator of DNA gyrase
NDR94_RS08890	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NDR94_RS08895	COG1804	L-carnitine dehydratase bile acid-inducible protein F
NDR94_RS08920	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NDR94_RS08930	COG1770	oligopeptidase
NDR94_RS08935	COG1250	3-hydroxyacyl-CoA dehydrogenase
NDR94_RS08935	COG1024	Enoyl-CoA hydratase
NDR94_RS08940	COG0183	Belongs to the thiolase family
NDR94_RS09005	COG0653	protein targeting
NDR94_RS09025	COG0133	tryptophan synthase activity
NDR94_RS09030	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NDR94_RS09035	COG1012	belongs to the aldehyde dehydrogenase family
NDR94_RS09040	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
NDR94_RS09045	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NDR94_RS09070	COG0297	glycogen (starch) synthase activity
NDR94_RS09100	COG0250	Participates in transcription elongation, termination and antitermination
NDR94_RS09160	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS09175	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NDR94_RS09180	COG0066	3-isopropylmalate dehydratase activity
NDR94_RS09210	COG0135	phosphoribosylanthranilate isomerase activity
NDR94_RS09215	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
NDR94_RS09220	COG0285	dihydrofolate synthase activity
NDR94_RS09225	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NDR94_RS09230	COG1286	toxin biosynthetic process
NDR94_RS09265	COG0789	Transcriptional regulator
NDR94_RS09295	COG4771	TonB-dependent receptor
NDR94_RS09300	COG0254	rRNA binding
NDR94_RS09315	COG0655	NAD(P)H dehydrogenase (quinone) activity
NDR94_RS09320	COG2814	Major facilitator Superfamily
NDR94_RS09345	COG1271	oxidase subunit
NDR94_RS09350	COG1294	oxidase, subunit
NDR94_RS09370	COG1902	pentaerythritol trinitrate reductase activity
NDR94_RS09370	COG0446	pyridine nucleotide-disulphide oxidoreductase
NDR94_RS09400	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NDR94_RS09415	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
NDR94_RS09420	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NDR94_RS09435	COG0573	inorganic phosphate transmembrane transporter activity
NDR94_RS09450	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
NDR94_RS09455	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDR94_RS09465	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NDR94_RS09495	COG2010	Cytochrome c
NDR94_RS09510	COG3278	Belongs to the heme-copper respiratory oxidase family
NDR94_RS09515	COG2010	Cytochrome c
NDR94_RS09525	COG3278	Belongs to the heme-copper respiratory oxidase family
NDR94_RS09535	COG0840	transmembrane signaling receptor activity
NDR94_RS09545	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
NDR94_RS09565	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NDR94_RS09570	COG2010	Cytochrome c
NDR94_RS09570	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NDR94_RS09585	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NDR94_RS09590	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NDR94_RS09600	COG3115	cell septum assembly
NDR94_RS09605	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NDR94_RS09655	COG3123	guanosine phosphorylase activity
NDR94_RS09675	COG2009	succinate dehydrogenase
NDR94_RS09680	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NDR94_RS09685	COG1053	succinate dehydrogenase
NDR94_RS09690	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NDR94_RS09710	COG0045	succinate-CoA ligase (ADP-forming) activity
NDR94_RS09745	COG0326	Molecular chaperone. Has ATPase activity
NDR94_RS09775	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
NDR94_RS09785	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NDR94_RS09790	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
NDR94_RS09825	COG0628	permease
NDR94_RS09835	COG0709	Synthesizes selenophosphate from selenide and ATP
NDR94_RS09840	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
NDR94_RS09850	COG0714	Associated with various cellular activities
NDR94_RS09880	COG1238	metal cluster binding
NDR94_RS09895	COG0183	Belongs to the thiolase family
NDR94_RS09900	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS09905	COG0318	PFAM AMP-dependent synthetase and ligase
NDR94_RS09910	COG1804	L-carnitine dehydratase bile acid-inducible protein F
NDR94_RS09925	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS09930	COG1024	Enoyl-CoA hydratase
NDR94_RS09960	COG0058	SHG alpha-glucan phosphorylase activity
NDR94_RS09975	COG2207	Transcriptional regulator
NDR94_RS09990	COG4991	sh3 domain protein
NDR94_RS09995	COG4191	Histidine kinase
NDR94_RS09995	COG0784	Response regulator, receiver
NDR94_RS10000	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NDR94_RS10020	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NDR94_RS10035	COG3447	MASE1 domain protein
NDR94_RS10035	COG5001	Diguanylate cyclase
NDR94_RS10035	COG5002	protein histidine kinase activity
NDR94_RS10075	COG0210	DNA helicase
NDR94_RS10080	COG0515	serine threonine protein kinase
NDR94_RS10090	COG2146	nitrite reductase [NAD(P)H] activity
NDR94_RS10090	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDR94_RS10095	COG2146	nitrite reductase [NAD(P)H] activity
NDR94_RS10095	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDR94_RS10110	COG0840	transmembrane signaling receptor activity
NDR94_RS10115	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NDR94_RS10130	COG4221	oxidoreductase activity
NDR94_RS10140	COG0415	Belongs to the DNA photolyase family
NDR94_RS10145	COG0789	Transcriptional regulator
NDR94_RS10150	COG3272	Protein of unknown function (DUF1722)
NDR94_RS10155	COG1090	epimerase
NDR94_RS10160	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
NDR94_RS10170	COG1366	Belongs to the anti-sigma-factor antagonist family
NDR94_RS10190	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NDR94_RS10195	COG0302	gtp cyclohydrolase
NDR94_RS10205	COG0789	Transcriptional regulator
NDR94_RS10210	COG1025	Belongs to the peptidase M16 family
NDR94_RS10225	COG0784	Response regulator, receiver
NDR94_RS10225	COG2205	protein histidine kinase activity
NDR94_RS10230	COG0435	Glutathione S-transferase
NDR94_RS10235	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NDR94_RS10240	COG2920	part of a sulfur-relay system
NDR94_RS10290	COG0174	glutamine synthetase
NDR94_RS10295	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDR94_RS10300	COG1116	anion transmembrane transporter activity
NDR94_RS10305	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDR94_RS10315	COG1335	isochorismatase
NDR94_RS10335	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS10345	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDR94_RS10360	COG0439	Biotin carboxylase
NDR94_RS10375	COG3842	ATPase activity
NDR94_RS10390	COG0084	hydrolase, TatD family'
NDR94_RS10395	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NDR94_RS10400	COG5380	lipid catabolic process
NDR94_RS10415	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NDR94_RS10420	COG4181	ATPase activity
NDR94_RS10450	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NDR94_RS10455	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NDR94_RS10470	COG0560	Phosphoserine phosphatase
NDR94_RS10495	COG1802	Transcriptional regulator
NDR94_RS10505	COG0372	Belongs to the citrate synthase family
NDR94_RS10520	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
NDR94_RS10530	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NDR94_RS10545	COG0668	transmembrane transport
NDR94_RS10580	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NDR94_RS10585	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NDR94_RS10590	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDR94_RS10595	COG0215	cysteine-tRNA ligase activity
NDR94_RS10600	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NDR94_RS10620	COG2186	Transcriptional regulator
NDR94_RS10630	COG0544	peptidyl-prolyl cis-trans isomerase activity
NDR94_RS10640	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NDR94_RS10645	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
NDR94_RS10660	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
NDR94_RS10700	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
NDR94_RS10705	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
NDR94_RS10715	COG0535	radical SAM domain protein
NDR94_RS10730	COG5002	protein histidine kinase activity
NDR94_RS10745	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDR94_RS10750	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDR94_RS10805	COG0798	PFAM Bile acid sodium symporter
NDR94_RS10810	COG2072	flavoprotein involved in K transport
NDR94_RS10815	COG0640	Transcriptional regulator
NDR94_RS10820	COG0431	NADPH-dependent FMN reductase
NDR94_RS10830	COG1742	UPF0060 membrane protein
NDR94_RS10835	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NDR94_RS10860	COG5642	Protein of unknown function (DUF2384)
NDR94_RS10885	COG0840	transmembrane signaling receptor activity
NDR94_RS10910	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NDR94_RS10940	COG1566	PFAM secretion protein HlyD family protein
NDR94_RS10950	COG0583	DNA-binding transcription factor activity
NDR94_RS10965	COG0723	plastoquinol--plastocyanin reductase activity
NDR94_RS10970	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS10975	COG0028	Belongs to the TPP enzyme family
NDR94_RS11000	COG3685	Protein conserved in bacteria
NDR94_RS11005	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
NDR94_RS11005	COG3264	Mechanosensitive ion channel
NDR94_RS11010	COG1058	Belongs to the CinA family
NDR94_RS11010	COG1546	Belongs to the CinA family
NDR94_RS11015	COG0297	glycogen (starch) synthase activity
NDR94_RS11020	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NDR94_RS11045	COG0739	heme binding
NDR94_RS11055	COG3384	dioxygenase
NDR94_RS11060	COG0583	DNA-binding transcription factor activity
NDR94_RS11075	COG3568	Endonuclease Exonuclease Phosphatase
NDR94_RS11080	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NDR94_RS11085	COG0392	lysyltransferase activity
NDR94_RS11090	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NDR94_RS11095	COG0366	Alpha amylase catalytic
NDR94_RS11115	COG2864	formate dehydrogenase
NDR94_RS11120	COG0437	4 iron, 4 sulfur cluster binding
NDR94_RS11140	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS11145	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS11145	COG0604	alcohol dehydrogenase
NDR94_RS11145	COG3321	synthase
NDR94_RS11195	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDR94_RS11205	COG0728	peptidoglycan biosynthetic process
NDR94_RS11220	COG1115	amino acid carrier protein
NDR94_RS11225	COG2911	Protein conserved in bacteria
NDR94_RS11230	COG0729	surface antigen
NDR94_RS11245	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NDR94_RS11265	COG1175	transmembrane transport
NDR94_RS11285	COG1070	Carbohydrate kinase
NDR94_RS11300	COG1609	Transcriptional regulator
NDR94_RS11305	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NDR94_RS11310	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
NDR94_RS11315	COG3265	gluconokinase activity
NDR94_RS11320	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NDR94_RS11325	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NDR94_RS11350	COG0488	(ABC) transporter
NDR94_RS11355	COG1968	undecaprenyl-diphosphatase activity
NDR94_RS11360	COG0840	transmembrane signaling receptor activity
NDR94_RS11375	COG2323	membrane
NDR94_RS11390	COG3706	GGDEF domain
NDR94_RS11395	COG2201	protein-glutamate methylesterase activity
NDR94_RS11405	COG0316	Belongs to the HesB IscA family
NDR94_RS11405	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
NDR94_RS11425	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
NDR94_RS11425	COG2755	lipolytic protein G-D-S-L family
NDR94_RS11450	COG2223	nitrite transmembrane transporter activity
NDR94_RS11455	COG0820	rRNA (adenine-C2-)-methyltransferase activity
NDR94_RS11470	COG0071	Belongs to the small heat shock protein (HSP20) family
NDR94_RS11490	COG0604	alcohol dehydrogenase
NDR94_RS11495	COG0616	signal peptide processing
NDR94_RS11515	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS11530	COG2816	NAD+ diphosphatase activity
NDR94_RS11540	COG1024	Enoyl-CoA hydratase
NDR94_RS11550	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NDR94_RS11555	COG0328	RNA-DNA hybrid ribonuclease activity
NDR94_RS11565	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDR94_RS11570	COG0741	lytic transglycosylase activity
NDR94_RS11570	COG1388	LysM domain
NDR94_RS11580	COG4166	transmembrane transport
NDR94_RS11590	COG4174	ABC transporter (Permease)
NDR94_RS11595	COG4239	(ABC) transporter, permease
NDR94_RS11600	COG4172	Belongs to the ABC transporter superfamily
NDR94_RS11630	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDR94_RS11695	COG0840	transmembrane signaling receptor activity
NDR94_RS11715	COG1131	(ABC) transporter
NDR94_RS11735	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NDR94_RS11735	COG1648	precorrin-2 dehydrogenase activity
NDR94_RS11740	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
NDR94_RS11745	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NDR94_RS11750	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NDR94_RS11755	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
NDR94_RS11765	COG0492	ferredoxin-NADP+ reductase activity
NDR94_RS11770	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
NDR94_RS11775	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
NDR94_RS11780	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
NDR94_RS11785	COG0542	response to heat
NDR94_RS11790	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
NDR94_RS11815	COG0482	sulfurtransferase activity
NDR94_RS11820	COG2915	High frequency lysogenization protein hflD homolog
NDR94_RS11830	COG2850	peptidyl-arginine hydroxylation
NDR94_RS11835	COG2153	protein acetylation
NDR94_RS11860	COG0628	permease
NDR94_RS11870	COG2056	Na+-H+ antiporter family
NDR94_RS11875	COG0720	synthase
NDR94_RS11905	COG0402	S-adenosylhomocysteine deaminase activity
NDR94_RS11910	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NDR94_RS11915	COG0546	phosphoglycolate phosphatase activity
NDR94_RS11920	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS11930	COG0800	Aldolase
NDR94_RS11955	COG2840	Smr protein MutS2
NDR94_RS11965	COG0625	glutathione transferase activity
NDR94_RS11970	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDR94_RS11985	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
NDR94_RS11990	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
NDR94_RS12000	COG1605	Chorismate mutase
NDR94_RS12000	COG0077	Prephenate dehydratase
NDR94_RS12005	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
NDR94_RS12015	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
NDR94_RS12030	COG0587	DNA-directed DNA polymerase activity
NDR94_RS12050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NDR94_RS12055	COG0765	amino acid transport
NDR94_RS12060	COG1126	abc transporter atp-binding protein
NDR94_RS12065	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDR94_RS12070	COG0475	glutathione-regulated potassium exporter activity
NDR94_RS12070	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NDR94_RS12080	COG0542	response to heat
NDR94_RS12095	COG0745	RESPONSE REGULATOR receiver
NDR94_RS12110	COG0776	regulation of translation
NDR94_RS12115	COG0072	phenylalanine-tRNA ligase activity
NDR94_RS12120	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
NDR94_RS12125	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
NDR94_RS12130	COG0291	Belongs to the bacterial ribosomal protein bL35 family
NDR94_RS12140	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
NDR94_RS12150	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDR94_RS12225	COG3171	Protein conserved in bacteria
NDR94_RS12230	COG2027	D-alanyl-D-alanine carboxypeptidase
NDR94_RS12235	COG0116	Belongs to the methyltransferase superfamily
NDR94_RS12235	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NDR94_RS12240	COG3130	regulation of translation
NDR94_RS12245	COG0167	dihydroorotate dehydrogenase activity
NDR94_RS12265	COG0714	Associated with various cellular activities
NDR94_RS12285	COG2304	oxidoreductase activity
NDR94_RS12295	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDR94_RS12300	COG3707	response regulator
NDR94_RS12320	COG2223	nitrite transmembrane transporter activity
NDR94_RS12325	COG2815	serine threonine protein kinase
NDR94_RS12325	COG0515	serine threonine protein kinase
NDR94_RS12335	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NDR94_RS12340	COG2146	nitrite reductase [NAD(P)H] activity
NDR94_RS12345	COG0243	molybdopterin cofactor binding
NDR94_RS12365	COG0308	aminopeptidase N
NDR94_RS12385	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NDR94_RS12390	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NDR94_RS12405	COG0730	response to heat
NDR94_RS12420	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
NDR94_RS12445	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
NDR94_RS12460	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
NDR94_RS12480	COG3842	ATPase activity
NDR94_RS12485	COG0395	ABC-type sugar transport system, permease component
NDR94_RS12490	COG1175	transmembrane transport
NDR94_RS12495	COG1653	transport
NDR94_RS12520	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
NDR94_RS12530	COG0180	Tryptophanyl-tRNA synthetase
NDR94_RS12535	COG0009	L-threonylcarbamoyladenylate synthase
NDR94_RS12540	COG0613	PHP domain protein
NDR94_RS12545	COG2350	Protein conserved in bacteria
NDR94_RS12555	COG0745	RESPONSE REGULATOR receiver
NDR94_RS12570	COG0778	Nitroreductase
NDR94_RS12575	COG0727	PFAM Uncharacterised protein family (UPF0153)
NDR94_RS12580	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NDR94_RS12585	COG2354	Protein conserved in bacteria
NDR94_RS12605	COG2207	Transcriptional regulator
NDR94_RS12620	COG1752	Esterase of the alpha-beta hydrolase superfamily
NDR94_RS12630	COG0514	ATP-dependent DNA helicase (RecQ)
NDR94_RS12640	COG2832	Protein of unknown function (DUF454)
NDR94_RS12660	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
NDR94_RS12670	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NDR94_RS12680	COG0542	response to heat
NDR94_RS12700	COG0121	glutamine amidotransferase
NDR94_RS12710	COG0589	response to stress
NDR94_RS12720	COG0488	(ABC) transporter
NDR94_RS12725	COG0741	lytic transglycosylase activity
NDR94_RS12730	COG3217	Mosc domain protein beta barrel domain protein
NDR94_RS12730	COG0633	Ferredoxin
NDR94_RS12735	COG3437	response regulator, receiver
NDR94_RS12745	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
NDR94_RS12750	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NDR94_RS12755	COG3206	protein involved in exopolysaccharide biosynthesis
NDR94_RS12755	COG0489	protein tyrosine kinase activity
NDR94_RS12760	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
NDR94_RS12800	COG0183	Belongs to the thiolase family
NDR94_RS12810	COG2977	Belongs to the P-Pant transferase superfamily
NDR94_RS12820	COG0776	regulation of translation
NDR94_RS12835	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
NDR94_RS12840	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
NDR94_RS12845	COG0471	metal ion transport
NDR94_RS12850	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NDR94_RS12865	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
NDR94_RS12890	COG4591	ABC-type transport system involved in lipoprotein release permease component
NDR94_RS12895	COG1136	(ABC) transporter
NDR94_RS12905	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NDR94_RS12905	COG3453	Protein conserved in bacteria
NDR94_RS12935	COG0640	Transcriptional regulator
NDR94_RS12970	COG0386	Belongs to the glutathione peroxidase family
NDR94_RS12975	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NDR94_RS12980	COG0436	Aminotransferase
NDR94_RS12990	COG0501	Belongs to the peptidase M48B family
NDR94_RS13000	COG0500	methyltransferase
NDR94_RS13050	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
NDR94_RS13080	COG2257	FlhB HrpN YscU SpaS Family
NDR94_RS13095	COG0835	chemotaxis
NDR94_RS13105	COG1192	Involved in chromosome partitioning
NDR94_RS13110	COG1360	Flagellar Motor Protein
NDR94_RS13115	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NDR94_RS13120	COG2201	protein-glutamate methylesterase activity
NDR94_RS13125	COG0643	Histidine kinase
NDR94_RS13125	COG0784	Response regulator, receiver
NDR94_RS13125	COG2198	Histidine kinase
NDR94_RS13130	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
NDR94_RS13160	COG2032	superoxide dismutase activity
NDR94_RS13175	COG1987	bacterial-type flagellum assembly
NDR94_RS13215	COG0745	RESPONSE REGULATOR receiver
NDR94_RS13250	COG1677	Flagellar hook-basal body complex protein FliE
NDR94_RS13255	COG3135	benzoate transporter
NDR94_RS13265	COG2130	NADP-dependent
NDR94_RS13280	COG3300	MHYT domain
NDR94_RS13280	COG5001	Diguanylate cyclase
NDR94_RS13290	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDR94_RS13350	COG1113	amino acid transport
NDR94_RS13355	COG0084	hydrolase, TatD family'
NDR94_RS13370	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NDR94_RS13375	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NDR94_RS13385	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NDR94_RS13390	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NDR94_RS13405	COG0416	fatty acid biosynthetic process
NDR94_RS13410	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NDR94_RS13420	COG0424	maF-like protein
NDR94_RS13425	COG0616	signal peptide processing
NDR94_RS13425	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NDR94_RS13440	COG1530	ribonuclease E activity
NDR94_RS13445	COG0812	UDP-N-acetylmuramate dehydrogenase activity
NDR94_RS13450	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NDR94_RS13455	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
NDR94_RS13460	COG2835	tetraacyldisaccharide 4'-kinase activity
NDR94_RS13465	COG1663	tetraacyldisaccharide 4'-kinase activity
NDR94_RS13475	COG0811	peptide transport
NDR94_RS13480	COG2333	competence protein COMEC
NDR94_RS13480	COG0658	competence protein
NDR94_RS13495	COG1136	(ABC) transporter
NDR94_RS13500	COG4591	ABC-type transport system involved in lipoprotein release permease component
NDR94_RS13515	COG0584	glycerophosphoryl diester phosphodiesterase
NDR94_RS13520	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NDR94_RS13530	COG1477	protein flavinylation
NDR94_RS13540	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NDR94_RS13555	COG1805	sodium ion transport
NDR94_RS13570	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NDR94_RS13580	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NDR94_RS13595	COG1793	dna ligase
NDR94_RS13600	COG1201	RNA secondary structure unwinding
NDR94_RS13630	COG3956	TIGRFAM MazG family protein
NDR94_RS13635	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NDR94_RS13655	COG2860	membrane
NDR94_RS13660	COG5002	protein histidine kinase activity
NDR94_RS13660	COG2205	protein histidine kinase activity
NDR94_RS13660	COG0784	Response regulator, receiver
NDR94_RS13665	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
NDR94_RS13665	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NDR94_RS13685	COG0583	DNA-binding transcription factor activity
NDR94_RS13700	COG0513	Belongs to the DEAD box helicase family
NDR94_RS13740	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NDR94_RS13745	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NDR94_RS13750	COG2226	methyltransferase
NDR94_RS13775	COG1131	(ABC) transporter
NDR94_RS13810	COG2937	Belongs to the GPAT DAPAT family
NDR94_RS13815	COG0456	acetyltransferase
NDR94_RS13830	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NDR94_RS13895	COG0456	acetyltransferase
NDR94_RS13900	COG0655	NAD(P)H dehydrogenase (quinone) activity
NDR94_RS13925	COG1472	Belongs to the glycosyl hydrolase 3 family
NDR94_RS13935	COG1346	cytolysis
NDR94_RS13940	COG1380	Effector of murein hydrolase LrgA
NDR94_RS13945	COG0348	domain, Protein
NDR94_RS13950	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDR94_RS13970	COG1309	transcriptional regulator
NDR94_RS13975	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDR94_RS13980	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDR94_RS13990	COG0742	ribosomal rna small subunit methyltransferase
NDR94_RS14015	COG0563	adenylate kinase activity
NDR94_RS14020	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
NDR94_RS14060	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
NDR94_RS14075	COG1902	pentaerythritol trinitrate reductase activity
NDR94_RS14080	COG0243	molybdopterin cofactor binding
NDR94_RS14085	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
NDR94_RS14095	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
NDR94_RS14100	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
NDR94_RS14105	COG1984	allophanate hydrolase subunit 2
NDR94_RS14110	COG4336	lyase activity
NDR94_RS14115	COG1914	H( )-stimulated, divalent metal cation uptake system
NDR94_RS14140	COG0545	Peptidyl-prolyl cis-trans isomerase
NDR94_RS14155	COG2974	May be involved in recombination
NDR94_RS14160	COG2814	Major facilitator Superfamily
NDR94_RS14180	COG2205	protein histidine kinase activity
NDR94_RS14185	COG3174	membrane
NDR94_RS14220	COG0417	DNA replication proofreading
NDR94_RS14230	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
NDR94_RS14240	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
NDR94_RS14250	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NDR94_RS14260	COG0425	Belongs to the sulfur carrier protein TusA family
NDR94_RS14270	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
NDR94_RS14275	COG0427	acetyl-CoA hydrolase
NDR94_RS14285	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NDR94_RS14290	COG0602	queuosine metabolic process
NDR94_RS14295	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
NDR94_RS14300	COG2885	chlorophyll binding
NDR94_RS14305	COG0823	Involved in the tonB-independent uptake of proteins
NDR94_RS14325	COG0824	Thioesterase
NDR94_RS14330	COG2255	four-way junction helicase activity
NDR94_RS14335	COG0632	four-way junction helicase activity
NDR94_RS14340	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
NDR94_RS14350	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
NDR94_RS14355	COG0783	Belongs to the Dps family
NDR94_RS14365	COG2900	Belongs to the SlyX family
NDR94_RS14380	COG0442	prolyl-tRNA aminoacylation
NDR94_RS14395	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NDR94_RS14410	COG1295	ribonuclease BN
NDR94_RS14415	COG1393	Belongs to the ArsC family
NDR94_RS14430	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NDR94_RS14435	COG0628	permease
NDR94_RS14445	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
NDR94_RS14450	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NDR94_RS14465	COG0436	Aminotransferase
NDR94_RS14485	COG1393	Belongs to the ArsC family
NDR94_RS14490	COG2171	N-acyltransferase activity
NDR94_RS14495	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NDR94_RS14500	COG2166	iron-sulfur cluster assembly
NDR94_RS14510	COG3258	Cytochrome c
NDR94_RS14515	COG2863	cytochrome
NDR94_RS14525	COG3530	Putative quorum-sensing-regulated virulence factor
NDR94_RS14535	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NDR94_RS14545	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
NDR94_RS14555	COG0583	DNA-binding transcription factor activity
NDR94_RS14560	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS14570	COG1280	lysine exporter protein (LysE YggA)
NDR94_RS14590	COG1462	curli production assembly transport component CsgG
NDR94_RS14610	COG1309	transcriptional regulator
NDR94_RS14615	COG0583	DNA-binding transcription factor activity
NDR94_RS14620	COG4067	protein conserved in archaea
NDR94_RS14620	COG0189	ligase activity
NDR94_RS14625	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NDR94_RS14625	COG0116	Belongs to the methyltransferase superfamily
NDR94_RS14630	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
NDR94_RS14645	COG3321	synthase
NDR94_RS14645	COG0604	alcohol dehydrogenase
NDR94_RS14655	COG3284	Transcriptional regulator
NDR94_RS14660	COG0659	secondary active sulfate transmembrane transporter activity
NDR94_RS14670	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NDR94_RS14700	COG1280	lysine exporter protein (LysE YggA)
NDR94_RS14720	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
NDR94_RS14730	COG4249	Peptidase C14 caspase catalytic subunit p20
NDR94_RS14735	COG1132	(ABC) transporter
NDR94_RS14775	COG0159	tryptophan synthase activity
NDR94_RS14790	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDR94_RS14800	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NDR94_RS14810	COG4221	oxidoreductase activity
NDR94_RS14820	COG2207	Transcriptional regulator
NDR94_RS14825	COG3845	ABC transporter
NDR94_RS14830	COG4603	Belongs to the binding-protein-dependent transport system permease family
NDR94_RS14835	COG1079	Belongs to the binding-protein-dependent transport system permease family
NDR94_RS14850	COG1301	dicarboxylic acid transport
NDR94_RS14860	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NDR94_RS14875	COG0471	metal ion transport
NDR94_RS14875	COG0490	domain, Protein
NDR94_RS14885	COG2814	Major facilitator Superfamily
NDR94_RS14930	COG1279	arginine transmembrane transporter activity
NDR94_RS14955	COG2733	membrane
NDR94_RS14975	COG0537	adenosine 5'-monophosphoramidase activity
NDR94_RS14985	COG2258	MOSC domain
NDR94_RS15000	COG3795	YCII-related domain
NDR94_RS15015	COG2851	Citrate transporter
NDR94_RS15025	COG1234	tRNA 3'-trailer cleavage
NDR94_RS15040	COG3257	ureidoglycine aminohydrolase activity
NDR94_RS15045	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
NDR94_RS15050	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
NDR94_RS15055	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NDR94_RS15060	COG0631	protein serine/threonine phosphatase activity
NDR94_RS15065	COG2815	serine threonine protein kinase
NDR94_RS15065	COG0515	serine threonine protein kinase
NDR94_RS15080	COG1643	Atp-dependent helicase
NDR94_RS15105	COG0318	PFAM AMP-dependent synthetase and ligase
NDR94_RS15110	COG2030	dehydratase
NDR94_RS15135	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NDR94_RS15145	COG0443	Heat shock 70 kDa protein
NDR94_RS15150	COG2271	Major facilitator Superfamily
NDR94_RS15155	COG3622	Belongs to the hyi family
NDR94_RS15160	COG2084	Dehydrogenase
NDR94_RS15165	COG1968	undecaprenyl-diphosphatase activity
NDR94_RS15175	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
NDR94_RS15185	COG3639	organic phosphonate transmembrane transporter activity
NDR94_RS15190	COG3639	organic phosphonate transmembrane transporter activity
NDR94_RS15240	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NDR94_RS15275	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDR94_RS15280	COG0556	nucleotide-excision repair
NDR94_RS15305	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NDR94_RS15315	COG3842	ATPase activity
NDR94_RS15320	COG0590	tRNA wobble adenosine to inosine editing
NDR94_RS15325	COG2132	Multicopper oxidase
NDR94_RS15330	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NDR94_RS15330	COG0519	Catalyzes the synthesis of GMP from XMP
NDR94_RS15345	COG1570	exodeoxyribonuclease VII activity
NDR94_RS15350	COG0739	heme binding
NDR94_RS15360	COG0668	transmembrane transport
NDR94_RS15375	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NDR94_RS15385	COG1064	alcohol dehydrogenase
NDR94_RS15395	COG2356	endonuclease I
NDR94_RS15400	COG3647	Membrane
NDR94_RS15410	COG2264	protein methyltransferase activity
NDR94_RS15425	COG0436	Aminotransferase
NDR94_RS15430	COG1045	serine acetyltransferase
NDR94_RS15435	COG1160	GTP binding
NDR94_RS15445	COG2976	Protein conserved in bacteria
NDR94_RS15450	COG0124	histidyl-tRNA synthetase
NDR94_RS15455	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
NDR94_RS15470	COG0820	rRNA (adenine-C2-)-methyltransferase activity
NDR94_RS15475	COG0105	UTP biosynthetic process
NDR94_RS15490	COG0443	Heat shock 70 kDa protein
NDR94_RS15495	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
NDR94_RS15500	COG0316	Belongs to the HesB IscA family
NDR94_RS15510	COG1104	cysteine desulfurase activity
NDR94_RS15535	COG3134	Outer membrane lipoprotein
NDR94_RS15550	COG1862	Preprotein translocase
NDR94_RS15570	COG1278	Cold shock
NDR94_RS15580	COG0795	lipopolysaccharide-transporting ATPase activity
NDR94_RS15585	COG0795	lipopolysaccharide-transporting ATPase activity
NDR94_RS15590	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NDR94_RS15620	COG0471	metal ion transport
NDR94_RS15620	COG0490	domain, Protein
NDR94_RS15625	COG0477	Major facilitator Superfamily
NDR94_RS15630	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
NDR94_RS15655	COG3081	Nucleoid-associated protein
NDR94_RS15660	COG2326	polyphosphate kinase activity
NDR94_RS15680	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NDR94_RS15685	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
NDR94_RS15725	COG0402	S-adenosylhomocysteine deaminase activity
NDR94_RS15730	COG0803	Belongs to the bacterial solute-binding protein 9 family
NDR94_RS15745	COG1802	Transcriptional regulator
NDR94_RS15750	COG2252	PERMEase
NDR94_RS15775	COG4266	Belongs to the allantoicase family
NDR94_RS15780	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
NDR94_RS15800	COG0840	transmembrane signaling receptor activity
NDR94_RS15805	COG1309	transcriptional regulator
NDR94_RS15840	COG5001	Diguanylate cyclase
NDR94_RS15840	COG3300	MHYT domain
NDR94_RS15845	COG0708	Exodeoxyribonuclease III
NDR94_RS15865	COG2351	hydroxyisourate hydrolase activity
NDR94_RS15870	COG0583	DNA-binding transcription factor activity
NDR94_RS15875	COG3960	tartronate-semialdehyde synthase activity
NDR94_RS15880	COG3622	Belongs to the hyi family
NDR94_RS15885	COG2084	Dehydrogenase
NDR94_RS15895	COG0469	pyruvate kinase activity
NDR94_RS15900	COG4413	Urea transporter
NDR94_RS15910	COG1017	nitric oxide dioxygenase activity
NDR94_RS15910	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NDR94_RS15925	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
NDR94_RS15930	COG3706	GGDEF domain
NDR94_RS15950	COG0583	DNA-binding transcription factor activity
NDR94_RS15955	COG1279	arginine transmembrane transporter activity
NDR94_RS15980	COG1704	LemA family
NDR94_RS16010	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDR94_RS16015	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDR94_RS16025	COG0459	protein refolding
NDR94_RS16030	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
NDR94_RS16035	COG3030	protein affecting phage T7 exclusion by the F plasmid
NDR94_RS16045	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS16065	COG0668	transmembrane transport
NDR94_RS16070	COG1666	GTP binding
NDR94_RS16075	COG0745	RESPONSE REGULATOR receiver
NDR94_RS16090	COG2096	Adenosyltransferase
NDR94_RS16120	COG0494	nUDIX hydrolase
NDR94_RS16130	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
NDR94_RS16135	COG0653	protein targeting
NDR94_RS16175	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
NDR94_RS16180	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
NDR94_RS16200	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
NDR94_RS16205	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NDR94_RS16215	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
NDR94_RS16220	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
NDR94_RS16230	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NDR94_RS16235	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
NDR94_RS16255	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
NDR94_RS16270	COG0582	viral genome integration into host DNA
NDR94_RS16290	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NDR94_RS16320	COG4372	Transposase
NDR94_RS16370	COG0318	PFAM AMP-dependent synthetase and ligase
NDR94_RS16375	COG4294	response to UV
NDR94_RS16380	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS16385	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NDR94_RS16390	COG1024	Enoyl-CoA hydratase
NDR94_RS16420	COG0789	Transcriptional regulator
NDR94_RS16425	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
NDR94_RS16435	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
NDR94_RS16470	COG4372	Transposase
NDR94_RS16475	COG3436	PFAM IS66 Orf2 family protein
NDR94_RS16505	COG0697	spore germination
NDR94_RS16510	COG0288	reversible hydration of carbon dioxide
NDR94_RS16515	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
NDR94_RS16520	COG1877	trehalose-phosphatase activity
NDR94_RS16530	COG0456	acetyltransferase
NDR94_RS16540	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NDR94_RS16550	COG0019	diaminopimelate decarboxylase activity
NDR94_RS16570	COG3008	intermembrane lipid transfer
NDR94_RS16575	COG2995	paraquat-inducible protein a
NDR94_RS16580	COG2995	paraquat-inducible protein a
NDR94_RS16610	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
NDR94_RS16620	COG1183	phosphatidylcholine synthase activity
NDR94_RS16625	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
NDR94_RS16635	COG0028	Belongs to the TPP enzyme family
NDR94_RS16655	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NDR94_RS16690	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NDR94_RS16705	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
NDR94_RS16720	COG2264	protein methyltransferase activity
NDR94_RS16740	COG0138	bifunctional purine biosynthesis protein purh
NDR94_RS16750	COG5002	protein histidine kinase activity
NDR94_RS16750	COG2205	protein histidine kinase activity
NDR94_RS16750	COG0784	Response regulator, receiver
NDR94_RS16755	COG2124	cytochrome p450
NDR94_RS16770	COG0679	Auxin Efflux Carrier
NDR94_RS16785	COG0436	Aminotransferase
NDR94_RS16790	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NDR94_RS16795	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NDR94_RS16805	COG4191	Histidine kinase
NDR94_RS16825	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
NDR94_RS16830	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
NDR94_RS16835	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
NDR94_RS16840	COG0166	Belongs to the GPI family
NDR94_RS16850	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NDR94_RS16875	COG1185	polyribonucleotide nucleotidyltransferase activity
NDR94_RS16880	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NDR94_RS16885	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
NDR94_RS16890	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NDR94_RS16895	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
NDR94_RS16900	COG0195	Participates in both transcription termination and antitermination
NDR94_RS16900	COG2251	uridine kinase activity
NDR94_RS16905	COG0779	Required for maturation of 30S ribosomal subunits
NDR94_RS16920	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NDR94_RS16925	COG0149	triose-phosphate isomerase activity
NDR94_RS16930	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NDR94_RS16935	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NDR94_RS16965	COG0505	Belongs to the CarA family
NDR94_RS16970	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
NDR94_RS16975	COG0484	heat shock protein binding
NDR94_RS16980	COG0443	Heat shock 70 kDa protein
NDR94_RS16985	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
NDR94_RS16990	COG0497	DNA recombination
NDR94_RS17000	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NDR94_RS17005	COG2914	Belongs to the UPF0125 (RnfH) family
NDR94_RS17015	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
NDR94_RS17025	COG1620	l-lactate permease
NDR94_RS17030	COG0247	lactate metabolic process
NDR94_RS17035	COG1139	Iron-sulfur cluster binding protein
NDR94_RS17125	COG2135	peptidase activity
NDR94_RS17135	COG0667	Aldo Keto reductase
NDR94_RS17155	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDR94_RS17175	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NDR94_RS17175	COG1017	nitric oxide dioxygenase activity
NDR94_RS17220	COG4372	Transposase
NDR94_RS17250	COG2132	Multicopper oxidase
NDR94_RS17270	COG2217	Heavy metal translocating P-type atpase
NDR94_RS17310	COG3344	reverse transcriptase
NDR94_RS17345	COG0469	pyruvate kinase activity
NDR94_RS17360	COG4584	PFAM Integrase catalytic
NDR94_RS17365	COG1484	DNA-dependent DNA replication
NDR94_RS17415	COG2826	transposase and inactivated derivatives, IS30 family
NDR94_RS17515	COG1111	helicase
NDR94_RS17515	COG1205	dead DEAH box helicase
NDR94_RS17550	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
NDR94_RS17655	COG4372	Transposase
NDR94_RS17680	COG1280	lysine exporter protein (LysE YggA)
NDR94_RS17690	COG3842	ATPase activity
NDR94_RS17695	COG0366	Alpha amylase catalytic
NDR94_RS17720	COG3833	ABC-type maltose transport systems, permease component
NDR94_RS17725	COG1175	transmembrane transport
NDR94_RS17735	COG0366	Alpha amylase catalytic
NDR94_RS17750	COG4580	involved in the transport of maltose and maltodextrins
NDR94_RS17765	COG4989	oxidoreductase activity
NDR94_RS17775	COG0800	Aldolase
NDR94_RS17790	COG1737	Transcriptional regulator
NDR94_RS17810	COG2814	Major facilitator Superfamily
NDR94_RS17860	COG3154	lipid carrier protein
NDR94_RS17865	COG0826	peptidase U32
NDR94_RS17870	COG0826	peptidase U32
NDR94_RS17880	COG3604	Transcriptional regulator
NDR94_RS17910	COG3256	nitric oxide reductase
NDR94_RS17915	COG2010	Cytochrome c
NDR94_RS17940	COG3391	amine dehydrogenase activity
NDR94_RS17945	COG2010	Cytochrome c
NDR94_RS17965	COG2010	Cytochrome c
NDR94_RS17970	COG0714	Associated with various cellular activities
NDR94_RS17975	COG1845	cytochrome c oxidase, subunit III
NDR94_RS17985	COG0535	radical SAM domain protein
NDR94_RS17990	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NDR94_RS17990	COG1648	precorrin-2 dehydrogenase activity
NDR94_RS18005	COG0617	tRNA 3'-terminal CCA addition
NDR94_RS18005	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
NDR94_RS18005	COG0517	IMP dehydrogenase activity
NDR94_RS18015	COG0840	transmembrane signaling receptor activity
NDR94_RS18020	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS18040	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
NDR94_RS18055	COG4263	nitrous-oxide reductase activity
NDR94_RS18060	COG0348	domain, Protein
NDR94_RS18060	COG3901	Regulator of nitric oxide reductase transcription
NDR94_RS18065	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS18080	COG3189	MarR family transcriptional regulator
NDR94_RS18095	COG0492	ferredoxin-NADP+ reductase activity
NDR94_RS18100	COG1760	l-serine dehydratase
NDR94_RS18120	COG2154	pterin-4-alpha-carbinolamine dehydratase
NDR94_RS18135	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
NDR94_RS18150	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
NDR94_RS18155	COG0402	S-adenosylhomocysteine deaminase activity
NDR94_RS18165	COG1607	acyl-coa hydrolase
NDR94_RS18170	COG2824	Alkylphosphonate utilization operon protein PhnA
NDR94_RS18175	COG1278	Cold shock
NDR94_RS18195	COG1079	Belongs to the binding-protein-dependent transport system permease family
NDR94_RS18205	COG3845	ABC transporter
NDR94_RS18240	COG0346	lactoylglutathione lyase activity
NDR94_RS18250	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NDR94_RS18275	COG1309	transcriptional regulator
NDR94_RS18280	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDR94_RS18285	COG1335	isochorismatase
NDR94_RS18290	COG0251	oxidation-reduction process
NDR94_RS18295	COG0596	Alpha beta hydrolase
NDR94_RS18300	COG0778	Nitroreductase
NDR94_RS18305	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NDR94_RS18335	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NDR94_RS18345	COG2814	Major facilitator Superfamily
NDR94_RS18350	COG1309	transcriptional regulator
NDR94_RS18360	COG2217	Heavy metal translocating P-type atpase
NDR94_RS18370	COG0840	transmembrane signaling receptor activity
NDR94_RS18385	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NDR94_RS18400	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NDR94_RS18400	COG2169	Transcriptional regulator
NDR94_RS18410	COG0084	hydrolase, TatD family'
NDR94_RS18415	COG0840	transmembrane signaling receptor activity
NDR94_RS18425	COG3023	N-Acetylmuramoyl-L-alanine amidase
NDR94_RS18430	COG1515	deoxyribonuclease V activity
NDR94_RS18440	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NDR94_RS18450	COG2945	thiolester hydrolase activity
NDR94_RS18475	COG1252	NADH dehydrogenase
NDR94_RS18550	COG3300	MHYT domain
NDR94_RS18550	COG5001	Diguanylate cyclase
NDR94_RS18555	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NDR94_RS18560	COG0305	Participates in initiation and elongation during chromosome replication
NDR94_RS18565	COG0359	binds to the 23S rRNA
NDR94_RS18575	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
NDR94_RS18580	COG0360	Binds together with S18 to 16S ribosomal RNA
NDR94_RS18585	COG4191	Histidine kinase
NDR94_RS18585	COG0784	Response regulator, receiver
NDR94_RS18590	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NDR94_RS18610	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NDR94_RS18615	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
NDR94_RS18620	COG0330	HflC and HflK could
NDR94_RS18625	COG0330	HflC and HflK could
NDR94_RS18630	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NDR94_RS18635	COG1923	regulation of RNA biosynthetic process
NDR94_RS18640	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
NDR94_RS18645	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NDR94_RS18650	COG0860	N-Acetylmuramoyl-L-alanine amidase
NDR94_RS18655	COG0802	atpase or kinase
NDR94_RS18660	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NDR94_RS18660	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NDR94_RS18685	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NDR94_RS18695	COG0531	amino acid
NDR94_RS18700	COG4303	Ethanolamine ammonia lyase large subunit
NDR94_RS18720	COG3228	Belongs to the MtfA family
NDR94_RS18755	COG3300	MHYT domain
NDR94_RS18755	COG5001	Diguanylate cyclase
NDR94_RS18760	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NDR94_RS18780	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NDR94_RS18785	COG0076	glutamate decarboxylase activity
NDR94_RS18790	COG3486	L-lysine 6-monooxygenase (NADPH) activity
NDR94_RS18815	COG1722	exodeoxyribonuclease VII activity
NDR94_RS18820	COG0142	geranyltranstransferase activity
NDR94_RS18825	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NDR94_RS18845	COG1028	Short-chain dehydrogenase reductase Sdr
NDR94_RS18855	COG1643	Atp-dependent helicase
NDR94_RS18875	COG1522	sequence-specific DNA binding
NDR94_RS18925	COG0829	nickel cation binding
NDR94_RS18930	COG0831	urea catabolic process
NDR94_RS18940	COG0832	Belongs to the urease beta subunit family
NDR94_RS18945	COG0804	urea catabolic process
NDR94_RS18955	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NDR94_RS18965	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
NDR94_RS18980	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
NDR94_RS18985	COG0830	nickel cation binding
NDR94_RS18990	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
NDR94_RS19005	COG4993	Dehydrogenase
NDR94_RS19010	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NDR94_RS19015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NDR94_RS19050	COG1518	maintenance of DNA repeat elements
NDR94_RS19055	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
NDR94_RS19065	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS19070	COG2205	protein histidine kinase activity
NDR94_RS19070	COG3437	response regulator, receiver
NDR94_RS19070	COG3850	Histidine kinase
NDR94_RS19070	COG4999	Histidine kinase
NDR94_RS19075	COG0352	thiamine-phosphate diphosphorylase activity
NDR94_RS19075	COG0351	phosphomethylpyrimidine kinase
NDR94_RS19080	COG0352	thiamine-phosphate diphosphorylase activity
NDR94_RS19085	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NDR94_RS19100	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NDR94_RS19105	COG1702	phosphate starvation-inducible protein PhoH
NDR94_RS19110	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
NDR94_RS19115	COG4535	Mg2 and Co2 transporter CorC
NDR94_RS19120	COG0815	Transfers the fatty acyl group on membrane lipoproteins
NDR94_RS19135	COG0495	leucyl-tRNA aminoacylation
NDR94_RS19150	COG3036	rescue of stalled ribosome
NDR94_RS19155	COG2951	lytic endotransglycosylase activity
NDR94_RS19165	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NDR94_RS19170	COG0321	lipoyl(octanoyl) transferase activity
NDR94_RS19175	COG2921	Belongs to the UPF0250 family
NDR94_RS19180	COG1686	Belongs to the peptidase S11 family
NDR94_RS19190	COG2951	lytic endotransglycosylase activity
NDR94_RS19195	COG0772	Belongs to the SEDS family
NDR94_RS19200	COG0768	penicillin binding
NDR94_RS19205	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NDR94_RS19215	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
NDR94_RS19220	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
NDR94_RS19225	COG0586	Pfam SNARE associated Golgi protein
NDR94_RS19235	COG1346	cytolysis
NDR94_RS19255	COG0702	epimerase
NDR94_RS19260	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
NDR94_RS19270	COG1162	GTPase activity
NDR94_RS19275	COG1360	Flagellar Motor Protein
NDR94_RS19280	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NDR94_RS19295	COG0688	phosphatidylethanolamine metabolic process
NDR94_RS19305	COG2200	EAL domain
NDR94_RS19310	COG1063	alcohol dehydrogenase
NDR94_RS19315	COG0560	Phosphoserine phosphatase
NDR94_RS19315	COG3830	Belongs to the UPF0237 family
NDR94_RS19350	COG3150	esterase
NDR94_RS19355	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
NDR94_RS19365	COG0494	nUDIX hydrolase
NDR94_RS19375	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
NDR94_RS19380	COG1538	Outer membrane efflux protein
NDR94_RS19385	COG1519	Transferase
NDR94_RS19420	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
NDR94_RS19420	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
NDR94_RS19440	COG3642	lipopolysaccharide core region biosynthetic process
NDR94_RS19445	COG1132	(ABC) transporter
NDR94_RS19470	COG2089	acid synthase
NDR94_RS19485	COG1083	cytidylyl-transferase
NDR94_RS19490	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NDR94_RS19495	COG1086	Polysaccharide biosynthesis protein
NDR94_RS19505	COG2192	nodulation
NDR94_RS19530	COG0438	transferase activity, transferring glycosyl groups
NDR94_RS19535	COG0859	PFAM glycosyl transferase family 9
NDR94_RS19540	COG0859	PFAM glycosyl transferase family 9
NDR94_RS19550	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
NDR94_RS19575	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NDR94_RS19580	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS19585	COG3706	GGDEF domain
NDR94_RS19590	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS19610	COG2226	methyltransferase
NDR94_RS19610	COG1073	alpha beta
NDR94_RS19615	COG0156	8-amino-7-oxononanoate synthase activity
NDR94_RS19620	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NDR94_RS19625	COG1040	competence protein
NDR94_RS19630	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
NDR94_RS19635	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NDR94_RS19670	COG1304	FMN binding
NDR94_RS19680	COG1960	acyl-CoA dehydrogenase activity
NDR94_RS19685	COG3263	regulation of cellular component size
NDR94_RS19690	COG1196	nuclear chromosome segregation
NDR94_RS19690	COG3264	Mechanosensitive ion channel
NDR94_RS19695	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
NDR94_RS19700	COG5002	protein histidine kinase activity
NDR94_RS19710	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NDR94_RS19715	COG2205	protein histidine kinase activity
NDR94_RS19715	COG2198	Histidine kinase
NDR94_RS19715	COG0784	Response regulator, receiver
NDR94_RS19745	COG0330	HflC and HflK could
NDR94_RS19800	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NDR94_RS19815	COG0513	Belongs to the DEAD box helicase family
NDR94_RS19820	COG1289	transmembrane transporter activity
NDR94_RS19830	COG2081	HI0933 family
NDR94_RS19870	COG0191	fructose-bisphosphate aldolase activity
NDR94_RS19885	COG0126	phosphoglycerate kinase activity
NDR94_RS19890	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NDR94_RS19895	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NDR94_RS19900	COG0583	DNA-binding transcription factor activity
NDR94_RS19905	COG2175	clavaminate synthase activity
NDR94_RS19915	COG2226	methyltransferase
NDR94_RS19920	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NDR94_RS19930	COG0842	Transport permease protein
NDR94_RS19935	COG1131	(ABC) transporter
NDR94_RS19940	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NDR94_RS19945	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NDR94_RS19965	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
NDR94_RS19970	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
NDR94_RS19975	COG0513	Belongs to the DEAD box helicase family
NDR94_RS19990	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NDR94_RS19995	COG2353	YceI-like domain
NDR94_RS20000	COG3038	cytochrome b561
NDR94_RS20010	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NDR94_RS20020	COG2201	protein-glutamate methylesterase activity
NDR94_RS20025	COG0643	Histidine kinase
NDR94_RS20025	COG2198	Histidine kinase
NDR94_RS20025	COG0784	Response regulator, receiver
NDR94_RS20065	COG1678	Uncharacterized ACR, COG1678
NDR94_RS20080	COG0540	Belongs to the ATCase OTCase family
NDR94_RS20135	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDR94_RS20140	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
NDR94_RS20140	COG2813	Specifically methylates the guanine in position
NDR94_RS20150	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NDR94_RS20155	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NDR94_RS20180	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NDR94_RS20195	COG0220	tRNA (guanine-N7-)-methyltransferase activity
NDR94_RS20200	COG2022	thiamine diphosphate biosynthetic process
NDR94_RS20210	COG2363	Small membrane protein
NDR94_RS20215	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NDR94_RS20235	COG2177	Part of the ABC transporter FtsEX involved in
NDR94_RS20240	COG2884	Cell division ATP-binding protein ftsE
NDR94_RS20245	COG0552	protein localization to endoplasmic reticulum
NDR94_RS20250	COG0612	Peptidase, M16
NDR94_RS20255	COG0612	Peptidase, M16
NDR94_RS20260	COG0742	ribosomal rna small subunit methyltransferase
NDR94_RS20290	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
NDR94_RS20295	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
NDR94_RS20300	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NDR94_RS20320	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
NDR94_RS20330	COG0693	protein deglycase activity
NDR94_RS20345	COG0129	dihydroxy-acid dehydratase activity
NDR94_RS20375	COG0584	glycerophosphoryl diester phosphodiesterase
NDR94_RS20385	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
NDR94_RS20400	COG0704	Plays a role in the regulation of phosphate uptake
NDR94_RS20405	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
NDR94_RS20410	COG0573	inorganic phosphate transmembrane transporter activity
NDR94_RS20425	COG1607	acyl-coa hydrolase
NDR94_RS20430	COG3706	GGDEF domain
NDR94_RS20430	COG4251	negative regulation of phosphorylation
NDR94_RS20430	COG5001	Diguanylate cyclase
NDR94_RS20430	COG2203	Gaf domain
NDR94_RS20445	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NDR94_RS20450	COG1074	ATP-dependent DNA helicase activity
NDR94_RS20455	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NDR94_RS20470	COG3180	Ammonia monooxygenase
NDR94_RS20505	COG2203	Gaf domain
NDR94_RS20505	COG3706	GGDEF domain
NDR94_RS20505	COG4251	negative regulation of phosphorylation
NDR94_RS20505	COG5001	Diguanylate cyclase
NDR94_RS20510	COG0840	transmembrane signaling receptor activity
NDR94_RS20520	COG0840	transmembrane signaling receptor activity
NDR94_RS20525	COG2358	TRAP transporter, solute receptor (TAXI family
NDR94_RS20535	COG0700	Nucleoside recognition
NDR94_RS20555	COG2204	response regulator
NDR94_RS20560	COG5002	protein histidine kinase activity
NDR94_RS20570	COG3023	N-Acetylmuramoyl-L-alanine amidase
NDR94_RS20595	COG0218	Necessary for normal cell division and for the maintenance of normal septation
NDR94_RS20600	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NDR94_RS20600	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NDR94_RS20615	COG1178	ABC-type Fe3 transport system permease component
NDR94_RS20625	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDR94_RS20635	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NDR94_RS20640	COG0006	proline dipeptidase activity
NDR94_RS20645	COG3079	Belongs to the UPF0149 family
NDR94_RS20665	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NDR94_RS20690	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
NDR94_RS20700	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NDR94_RS20705	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NDR94_RS20710	COG4942	peptidase
NDR94_RS20715	COG0793	Belongs to the peptidase S41A family
NDR94_RS20720	COG2861	carbohydrate metabolic process
NDR94_RS20735	COG0107	imidazoleglycerol-phosphate synthase activity
NDR94_RS20740	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
NDR94_RS20755	COG0131	Imidazoleglycerol-phosphate dehydratase
NDR94_RS20760	COG3707	response regulator
NDR94_RS20765	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NDR94_RS20775	COG1116	anion transmembrane transporter activity
NDR94_RS20790	COG1194	a g-specific adenine glycosylase
NDR94_RS20795	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
NDR94_RS20805	COG1525	nuclease
NDR94_RS20840	COG0676	glucose-6-phosphate 1-epimerase activity
NDR94_RS20860	COG0840	transmembrane signaling receptor activity
NDR94_RS20875	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
NDR94_RS20895	COG3052	prosthetic group binding
NDR94_RS20900	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
NDR94_RS20910	COG4221	oxidoreductase activity
NDR94_RS20930	COG2358	TRAP transporter, solute receptor (TAXI family
NDR94_RS20970	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NDR94_RS20980	COG3360	Dodecin
NDR94_RS20985	COG0625	glutathione transferase activity
NDR94_RS21005	COG1525	nuclease
NDR94_RS21005	COG4085	toxin activity
NDR94_RS21005	COG0737	Belongs to the 5'-nucleotidase family
NDR94_RS21025	COG1132	(ABC) transporter
NDR94_RS21045	COG2323	membrane
NDR94_RS21050	COG0583	DNA-binding transcription factor activity
NDR94_RS21085	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NDR94_RS21090	COG0339	signal peptide processing
NDR94_RS21120	COG0659	secondary active sulfate transmembrane transporter activity
NDR94_RS21130	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NDR94_RS21135	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NDR94_RS21140	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
NDR94_RS21170	COG0109	protoheme IX farnesyltransferase activity
NDR94_RS21195	COG1595	DNA-templated transcription, initiation
NDR94_RS21210	COG0523	cobalamin synthesis protein
NDR94_RS21225	COG4251	negative regulation of phosphorylation
NDR94_RS21230	COG0784	Response regulator, receiver
NDR94_RS21245	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NDR94_RS21250	COG1349	DNA-binding transcription factor activity
NDR94_RS21260	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
NDR94_RS21265	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NDR94_RS21270	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
NDR94_RS21275	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
NDR94_RS21280	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NDR94_RS21285	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
NDR94_RS21290	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NDR94_RS21300	COG0356	it plays a direct role in the translocation of protons across the membrane
NDR94_RS21305	COG3312	ion transport
NDR94_RS21310	COG1475	DNA binding
NDR94_RS21315	COG1192	Involved in chromosome partitioning
NDR94_RS21320	COG0357	Ribosomal RNA small subunit methyltransferase G
NDR94_RS21325	COG0445	tRNA wobble uridine modification
NDR94_RS21330	COG1320	monovalent cation:proton antiporter activity
NDR94_RS21345	COG0651	ATP synthesis coupled electron transport
NDR94_RS21350	COG1006	Multisubunit Na H antiporter MnhC subunit
NDR94_RS21355	COG2111	Na H antiporter
NDR94_RS21360	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
NDR94_RS21360	COG2111	Na H antiporter
NDR94_RS21365	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
NDR94_RS21370	COG0706	membrane insertase activity
NDR94_RS21375	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
NDR94_RS21380	COG0594	ribonuclease P activity
NDR94_RS21385	COG0230	Belongs to the bacterial ribosomal protein bL34 family