locus-tag	class	description
CL176_RS00005	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CL176_RS00010	COG2501	S4 domain
CL176_RS00015	COG0592	DNA-directed DNA polymerase activity
CL176_RS00020	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CL176_RS00055	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CL176_RS00060	COG1051	belongs to the nudix hydrolase family
CL176_RS00065	COG0445	tRNA wobble uridine modification
CL176_RS00075	COG1802	Transcriptional regulator
CL176_RS00090	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CL176_RS00095	COG0357	Ribosomal RNA small subunit methyltransferase G
CL176_RS00100	COG1192	Involved in chromosome partitioning
CL176_RS00105	COG1475	DNA binding
CL176_RS00110	COG4481	Protein conserved in bacteria
CL176_RS00115	COG0012	GTP binding
CL176_RS00125	COG0517	IMP dehydrogenase activity
CL176_RS00125	COG0516	GMP reductase activity
CL176_RS00135	COG5002	protein histidine kinase activity
CL176_RS00160	COG4708	membrane
CL176_RS00190	COG0542	response to heat
CL176_RS00200	COG0590	tRNA wobble adenosine to inosine editing
CL176_RS00225	COG3590	peptidase
CL176_RS00230	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CL176_RS00235	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CL176_RS00240	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CL176_RS00245	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CL176_RS00250	COG3870	Protein conserved in bacteria
CL176_RS00265	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CL176_RS00270	COG2827	Endonuclease containing a URI domain
CL176_RS00275	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CL176_RS00285	COG2818	Glycosylase
CL176_RS00295	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CL176_RS00300	COG1714	RDD family
CL176_RS00305	COG0616	signal peptide processing
CL176_RS00310	COG0039	L-malate dehydrogenase activity
CL176_RS00315	COG0436	Aminotransferase
CL176_RS00320	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CL176_RS00325	COG2011	ABC-type metal ion transport system permease component
CL176_RS00330	COG1785	Belongs to the alkaline phosphatase family
CL176_RS00345	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CL176_RS00350	COG1464	Belongs to the NlpA lipoprotein family
CL176_RS00355	COG1464	Belongs to the NlpA lipoprotein family
CL176_RS00360	COG1078	dGTPase activity
CL176_RS00365	COG0095	Lipoate-protein ligase
CL176_RS00375	COG3343	RNA polymerase activity
CL176_RS00390	COG1175	transmembrane transport
CL176_RS00395	COG3833	ABC-type maltose transport systems, permease component
CL176_RS00400	COG3842	ATPase activity
CL176_RS00405	COG0584	glycerophosphoryl diester phosphodiesterase
CL176_RS00410	COG1744	ABC transporter substrate-binding protein PnrA-like
CL176_RS00420	COG2197	response regulator
CL176_RS00435	COG1136	(ABC) transporter
CL176_RS00440	COG1653	transport
CL176_RS00455	COG1175	transmembrane transport
CL176_RS00460	COG0395	ABC-type sugar transport system, permease component
CL176_RS00465	COG3842	ATPase activity
CL176_RS00470	COG1653	transport
CL176_RS00475	COG0191	fructose-bisphosphate aldolase activity
CL176_RS00480	COG1882	Formate acetyltransferase
CL176_RS00485	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CL176_RS00490	COG0626	cystathionine gamma-synthase activity
CL176_RS00495	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CL176_RS00505	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CL176_RS00510	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CL176_RS00515	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CL176_RS00540	COG1428	Deoxynucleoside kinase
CL176_RS00545	COG4175	Glycine betaine
CL176_RS00545	COG3448	diguanylate cyclase activity
CL176_RS00560	COG1053	succinate dehydrogenase
CL176_RS00575	COG1063	alcohol dehydrogenase
CL176_RS00580	COG0436	Aminotransferase
CL176_RS00585	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CL176_RS00610	COG1611	Belongs to the LOG family
CL176_RS00620	COG1704	LemA family
CL176_RS00630	COG1181	Belongs to the D-alanine--D-alanine ligase family
CL176_RS00635	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CL176_RS00645	COG0736	holo-[acyl-carrier-protein] synthase activity
CL176_RS00665	COG1253	flavin adenine dinucleotide binding
CL176_RS00670	COG4122	O-methyltransferase activity
CL176_RS00675	COG0561	phosphatase activity
CL176_RS00685	COG0745	RESPONSE REGULATOR receiver
CL176_RS00690	COG5002	protein histidine kinase activity
CL176_RS00710	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CL176_RS00715	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CL176_RS00725	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CL176_RS00730	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CL176_RS00735	COG0625	glutathione transferase activity
CL176_RS00760	COG1473	amidohydrolase
CL176_RS00775	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CL176_RS00780	COG1607	acyl-coa hydrolase
CL176_RS00785	COG1214	PFAM Peptidase M22, glycoprotease
CL176_RS00805	COG0488	(ABC) transporter
CL176_RS00810	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CL176_RS00815	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CL176_RS00820	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CL176_RS00850	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
CL176_RS00895	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CL176_RS00900	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CL176_RS00940	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CL176_RS00950	COG4464	protein tyrosine phosphatase activity
CL176_RS00955	COG1316	TRANSCRIPTIONal
CL176_RS00975	COG1335	isochorismatase
CL176_RS00985	COG1737	Transcriptional regulator
CL176_RS00995	COG0561	phosphatase activity
CL176_RS01005	COG1131	(ABC) transporter
CL176_RS01100	COG1363	Peptidase, m42
CL176_RS01105	COG0095	Lipoate-protein ligase
CL176_RS01110	COG0791	NLP P60 protein
CL176_RS01110	COG1388	LysM domain
CL176_RS01115	COG2918	glutathione biosynthetic process
CL176_RS01115	COG1181	Belongs to the D-alanine--D-alanine ligase family
CL176_RS01210	COG0582	viral genome integration into host DNA
CL176_RS01220	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CL176_RS01235	COG0708	Exodeoxyribonuclease III
CL176_RS01260	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CL176_RS01260	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CL176_RS01265	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CL176_RS01270	COG2217	Heavy metal translocating P-type atpase
CL176_RS01280	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CL176_RS01290	COG3290	protein histidine kinase activity
CL176_RS01305	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CL176_RS01325	COG0137	argininosuccinate synthase activity
CL176_RS01330	COG0165	Argininosuccinate lyase
CL176_RS01335	COG4876	unkown
CL176_RS01340	COG3976	FMN-binding domain protein
CL176_RS01340	COG1053	succinate dehydrogenase
CL176_RS01395	COG2826	transposase and inactivated derivatives, IS30 family
CL176_RS01415	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CL176_RS01425	COG0346	lactoylglutathione lyase activity
CL176_RS01430	COG3275	phosphorelay sensor kinase activity
CL176_RS01435	COG3279	Response regulator of the LytR AlgR family
CL176_RS01445	COG1346	cytolysis
CL176_RS01465	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CL176_RS01500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CL176_RS01515	COG1705	Flagellar rod assembly protein muramidase FlgJ
CL176_RS01525	COG0210	DNA helicase
CL176_RS01530	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CL176_RS01535	COG4851	CamS sex pheromone cAM373 precursor
CL176_RS01540	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CL176_RS01550	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CL176_RS01565	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CL176_RS01570	COG0138	bifunctional purine biosynthesis protein purh
CL176_RS01580	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CL176_RS01585	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CL176_RS01595	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CL176_RS01605	COG0549	Belongs to the carbamate kinase family
CL176_RS01610	COG0519	Catalyzes the synthesis of GMP from XMP
CL176_RS01610	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CL176_RS01640	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CL176_RS01645	COG2261	transglycosylase associated protein
CL176_RS01655	COG0024	Methionine aminopeptidase
CL176_RS01665	COG0438	transferase activity, transferring glycosyl groups
CL176_RS01675	COG2309	aminopeptidase activity
CL176_RS01680	COG0716	FMN binding
CL176_RS01685	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CL176_RS01700	COG0438	transferase activity, transferring glycosyl groups
CL176_RS01720	COG1215	transferase activity, transferring glycosyl groups
CL176_RS01725	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CL176_RS01760	COG1132	(ABC) transporter
CL176_RS01775	COG1523	belongs to the glycosyl hydrolase 13 family
CL176_RS01785	COG4166	transmembrane transport
CL176_RS01790	COG0601	transmembrane transport
CL176_RS01795	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CL176_RS01800	COG0444	Belongs to the ABC transporter superfamily
CL176_RS01805	COG4608	Belongs to the ABC transporter superfamily
CL176_RS01810	COG1363	Peptidase, m42
CL176_RS01815	COG4166	transmembrane transport
CL176_RS01855	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
CL176_RS01860	COG1288	antiporter activity
CL176_RS01865	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CL176_RS01870	COG2376	Dihydroxyacetone kinase
CL176_RS01875	COG1461	Dihydroxyacetone kinase
CL176_RS01880	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
CL176_RS01885	COG1464	Belongs to the NlpA lipoprotein family
CL176_RS01895	COG3037	sugar-specific permease SgaT UlaA
CL176_RS01905	COG1349	DNA-binding transcription factor activity
CL176_RS01925	COG1028	Short-chain dehydrogenase reductase Sdr
CL176_RS01930	COG3250	beta-galactosidase activity
CL176_RS01935	COG1609	Transcriptional regulator
CL176_RS01940	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CL176_RS01950	COG1312	Catalyzes the dehydration of D-mannonate
CL176_RS01955	COG0800	Aldolase
CL176_RS01965	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CL176_RS01980	COG3716	PTS system mannose fructose sorbose family IID component
CL176_RS01990	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CL176_RS02000	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
CL176_RS02020	COG0698	ribose 5-phosphate isomerase
CL176_RS02030	COG1705	Flagellar rod assembly protein muramidase FlgJ
CL176_RS02105	COG0052	Belongs to the universal ribosomal protein uS2 family
CL176_RS02140	COG1783	phage Terminase large subunit
CL176_RS02165	COG0629	single-stranded DNA binding
CL176_RS02190	COG3723	Recombinational DNA repair protein, rece pathway
CL176_RS02200	COG5377	YqaJ viral recombinase family
CL176_RS02290	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CL176_RS02295	COG1869	D-ribose catabolic process
CL176_RS02300	COG1129	ABC transporter
CL176_RS02305	COG1172	Belongs to the binding-protein-dependent transport system permease family
CL176_RS02310	COG1879	ABC-type sugar transport system periplasmic component
CL176_RS02325	COG1070	Carbohydrate kinase
CL176_RS02330	COG1263	PTS System
CL176_RS02330	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS02360	COG3344	reverse transcriptase
CL176_RS02375	COG3711	transcriptional antiterminator
CL176_RS02375	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS02385	COG3730	PTS system glucitol sorbitol-specific
CL176_RS02390	COG3732	PTS system glucitol sorbitol-specific
CL176_RS02405	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CL176_RS02420	COG1349	DNA-binding transcription factor activity
CL176_RS02465	COG3414	Phosphotransferase system galactitol-specific IIB component
CL176_RS02470	COG3775	system Galactitol-specific IIC component
CL176_RS02475	COG1063	alcohol dehydrogenase
CL176_RS02480	COG3684	Belongs to the aldolase LacD family
CL176_RS02490	COG0561	phosphatase activity
CL176_RS02510	COG1484	DNA-dependent DNA replication
CL176_RS02520	COG2801	Transposase and inactivated derivatives
CL176_RS02530	COG1053	succinate dehydrogenase
CL176_RS02535	COG3976	FMN-binding domain protein
CL176_RS02535	COG0431	NADPH-dependent FMN reductase
CL176_RS02535	COG1053	succinate dehydrogenase
CL176_RS02550	COG3711	transcriptional antiterminator
CL176_RS02550	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS02585	COG1263	PTS System
CL176_RS02585	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS02585	COG2190	(PTS) system
CL176_RS02615	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS02615	COG3711	transcriptional antiterminator
CL176_RS02620	COG2706	6-phosphogluconolactonase activity
CL176_RS02635	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CL176_RS02655	COG0561	phosphatase activity
CL176_RS02670	COG1454	alcohol dehydrogenase
CL176_RS02675	COG1349	DNA-binding transcription factor activity
CL176_RS02680	COG0673	inositol 2-dehydrogenase activity
CL176_RS02685	COG1082	Xylose isomerase domain protein TIM barrel
CL176_RS02690	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CL176_RS02695	COG0673	inositol 2-dehydrogenase activity
CL176_RS02705	COG1447	Phosphotransferase system cellobiose-specific component IIA
CL176_RS02715	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CL176_RS02720	COG3962	Belongs to the TPP enzyme family
CL176_RS02725	COG0191	fructose-bisphosphate aldolase activity
CL176_RS02730	COG1012	belongs to the aldehyde dehydrogenase family
CL176_RS02740	COG1269	ATP hydrolysis coupled proton transport
CL176_RS02745	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CL176_RS02755	COG1527	subunit (C
CL176_RS02760	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
CL176_RS02770	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
CL176_RS02775	COG1394	ATPase activity, coupled to movement of substances
CL176_RS02800	COG1942	4-Oxalocrotonate Tautomerase
CL176_RS02825	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
CL176_RS02830	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CL176_RS02845	COG3257	ureidoglycine aminohydrolase activity
CL176_RS02850	COG2508	Transcriptional regulator
CL176_RS02855	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CL176_RS02860	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CL176_RS02865	COG1953	Uracil, thiamine, allantoin
CL176_RS02870	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CL176_RS02885	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CL176_RS02900	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CL176_RS02920	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CL176_RS02925	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CL176_RS02935	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CL176_RS02945	COG3443	Belongs to the bacterial solute-binding protein 9 family
CL176_RS02950	COG3443	Belongs to the bacterial solute-binding protein 9 family
CL176_RS02950	COG0803	Belongs to the bacterial solute-binding protein 9 family
CL176_RS02955	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CL176_RS02960	COG0471	metal ion transport
CL176_RS02965	COG0662	Cupin 2, conserved barrel domain protein
CL176_RS02970	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CL176_RS02975	COG0372	Belongs to the citrate synthase family
CL176_RS02980	COG0473	3-isopropylmalate dehydrogenase activity
CL176_RS02990	COG1120	ATPase activity
CL176_RS02995	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CL176_RS03005	COG2801	Transposase and inactivated derivatives
CL176_RS03020	COG2801	Transposase and inactivated derivatives
CL176_RS03035	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CL176_RS03040	COG1473	amidohydrolase
CL176_RS03050	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CL176_RS03055	COG3976	FMN-binding domain protein
CL176_RS03055	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CL176_RS03060	COG0633	Ferredoxin
CL176_RS03060	COG0543	2 iron, 2 sulfur cluster binding
CL176_RS03070	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CL176_RS03090	COG1129	ABC transporter
CL176_RS03095	COG0435	Glutathione S-transferase
CL176_RS03100	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CL176_RS03110	COG1073	alpha beta
CL176_RS03115	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CL176_RS03150	COG4129	membrane
CL176_RS03160	COG0180	Tryptophanyl-tRNA synthetase
CL176_RS03165	COG1393	Belongs to the ArsC family
CL176_RS03170	COG4862	establishment of competence for transformation
CL176_RS03180	COG1164	Oligoendopeptidase f
CL176_RS03185	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CL176_RS03200	COG1363	Peptidase, m42
CL176_RS03205	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CL176_RS03215	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CL176_RS03225	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CL176_RS03230	COG0237	dephospho-CoA kinase activity
CL176_RS03235	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CL176_RS03245	COG1484	DNA-dependent DNA replication
CL176_RS03250	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CL176_RS03265	COG1573	uracil-dna glycosylase
CL176_RS03270	COG0778	Nitroreductase
CL176_RS03280	COG1132	(ABC) transporter
CL176_RS03285	COG1132	(ABC) transporter
CL176_RS03290	COG2826	transposase and inactivated derivatives, IS30 family
CL176_RS03300	COG1121	(ABC) transporter
CL176_RS03305	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CL176_RS03310	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CL176_RS03315	COG0803	Belongs to the bacterial solute-binding protein 9 family
CL176_RS03330	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CL176_RS03340	COG0438	transferase activity, transferring glycosyl groups
CL176_RS03345	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CL176_RS03350	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CL176_RS03355	COG0564	pseudouridine synthase activity
CL176_RS03360	COG2239	Acts as a magnesium transporter
CL176_RS03365	COG2153	protein acetylation
CL176_RS03390	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS03405	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
CL176_RS03410	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CL176_RS03415	COG1534	Rna-binding protein
CL176_RS03420	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CL176_RS03425	COG1713	HD superfamily hydrolase involved in NAD metabolism
CL176_RS03430	COG0799	negative regulation of ribosome biogenesis
CL176_RS03435	COG2226	methyltransferase
CL176_RS03440	COG1323	Belongs to the UPF0348 family
CL176_RS03455	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CL176_RS03465	COG0740	serine-type endopeptidase activity
CL176_RS03470	COG2390	Transcriptional regulator
CL176_RS03475	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CL176_RS03480	COG0126	phosphoglycerate kinase activity
CL176_RS03485	COG0149	triose-phosphate isomerase activity
CL176_RS03490	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CL176_RS03495	COG0148	phosphopyruvate hydratase activity
CL176_RS03500	COG0028	Belongs to the TPP enzyme family
CL176_RS03505	COG1705	Flagellar rod assembly protein muramidase FlgJ
CL176_RS03505	COG1388	LysM domain
CL176_RS03515	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CL176_RS03525	COG0557	exoribonuclease II activity
CL176_RS03540	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CL176_RS03550	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CL176_RS03555	COG1459	type II secretion system
CL176_RS03580	COG0006	proline dipeptidase activity
CL176_RS03590	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CL176_RS03600	COG1570	exodeoxyribonuclease VII activity
CL176_RS03605	COG1722	exodeoxyribonuclease VII activity
CL176_RS03615	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CL176_RS03620	COG0497	DNA recombination
CL176_RS03625	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CL176_RS03630	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CL176_RS03635	COG0242	peptide deformylase activity
CL176_RS03645	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CL176_RS03660	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CL176_RS03680	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CL176_RS03685	COG0511	ligase activity, forming carbon-carbon bonds
CL176_RS03690	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CL176_RS03695	COG0439	Biotin carboxylase
CL176_RS03700	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CL176_RS03705	COG0825	malonyl-CoA metabolic process
CL176_RS03730	COG0356	it plays a direct role in the translocation of protons across the membrane
CL176_RS03735	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CL176_RS03750	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CL176_RS03760	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CL176_RS03765	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CL176_RS03775	COG4476	Belongs to the UPF0223 family
CL176_RS03780	COG0483	inositol monophosphate 1-phosphatase activity
CL176_RS03785	COG1217	gtp-binding protein TYPA
CL176_RS03790	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CL176_RS03800	COG0772	Belongs to the SEDS family
CL176_RS03805	COG4471	UPF0298 protein
CL176_RS03810	COG0742	ribosomal rna small subunit methyltransferase
CL176_RS03815	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CL176_RS03820	COG1555	photosystem II stabilization
CL176_RS03840	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CL176_RS03845	COG0765	amino acid transport
CL176_RS03850	COG0765	amino acid transport
CL176_RS03855	COG2190	(PTS) system
CL176_RS03855	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS03855	COG1263	PTS System
CL176_RS03860	COG1846	Transcriptional regulator
CL176_RS03865	COG0346	lactoylglutathione lyase activity
CL176_RS03870	COG0346	lactoylglutathione lyase activity
CL176_RS03875	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CL176_RS03890	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CL176_RS03895	COG1780	Probably involved in ribonucleotide reductase function
CL176_RS03940	COG0737	Belongs to the 5'-nucleotidase family
CL176_RS03945	COG4470	Protein conserved in bacteria
CL176_RS03950	COG0647	UMP catabolic process
CL176_RS03960	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CL176_RS03965	COG0492	ferredoxin-NADP+ reductase activity
CL176_RS03970	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
CL176_RS03975	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CL176_RS03980	COG1185	polyribonucleotide nucleotidyltransferase activity
CL176_RS03985	COG0166	Belongs to the GPI family
CL176_RS04105	COG0018	arginyl-trna synthetase
CL176_RS04245	COG1191	sigma factor activity
CL176_RS04285	COG3711	transcriptional antiterminator
CL176_RS04305	COG4372	Transposase
CL176_RS04325	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CL176_RS04330	COG1705	Flagellar rod assembly protein muramidase FlgJ
CL176_RS04330	COG1388	LysM domain
CL176_RS04335	COG0495	leucyl-tRNA aminoacylation
CL176_RS04340	COG2244	polysaccharide biosynthetic process
CL176_RS04345	COG1187	pseudouridine synthase activity
CL176_RS04385	COG0489	protein tyrosine kinase activity
CL176_RS04390	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CL176_RS04400	COG0438	transferase activity, transferring glycosyl groups
CL176_RS04405	COG0463	Glycosyl transferase, family 2
CL176_RS04405	COG1216	Glycosyl transferase, family 2
CL176_RS04415	COG0438	transferase activity, transferring glycosyl groups
CL176_RS04420	COG1216	Glycosyl transferase, family 2
CL176_RS04445	COG1216	Glycosyl transferase, family 2
CL176_RS04475	COG1857	crispr-associated protein
CL176_RS04490	COG1518	maintenance of DNA repeat elements
CL176_RS04520	COG2801	Transposase and inactivated derivatives
CL176_RS04530	COG4166	transmembrane transport
CL176_RS04535	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CL176_RS04540	COG2032	superoxide dismutase activity
CL176_RS04560	COG1177	transmembrane transport
CL176_RS04565	COG1176	ABC-type spermidine putrescine transport system, permease component I
CL176_RS04570	COG3842	ATPase activity
CL176_RS04585	COG0346	lactoylglutathione lyase activity
CL176_RS04595	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CL176_RS04600	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CL176_RS04615	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CL176_RS04615	COG0072	phenylalanine-tRNA ligase activity
CL176_RS04640	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CL176_RS04655	COG3711	transcriptional antiterminator
CL176_RS04660	COG1193	negative regulation of DNA recombination
CL176_RS04665	COG3118	belongs to the thioredoxin family
CL176_RS04670	COG0686	Belongs to the AlaDH PNT family
CL176_RS04710	COG0668	transmembrane transport
CL176_RS04725	COG1609	Transcriptional regulator
CL176_RS04735	COG0525	valine-tRNA ligase activity
CL176_RS04740	COG2003	Belongs to the UPF0758 family
CL176_RS04745	COG1278	Cold shock
CL176_RS04755	COG3022	response to hydroperoxide
CL176_RS04765	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CL176_RS04775	COG4619	ABC transporter
CL176_RS04780	COG0390	transport system, permease component
CL176_RS04785	COG3590	peptidase
CL176_RS04800	COG3590	peptidase
CL176_RS04810	COG1263	PTS System
CL176_RS04810	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS04810	COG2190	(PTS) system
CL176_RS04825	COG1077	Cell shape determining protein MreB Mrl
CL176_RS04840	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CL176_RS04850	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CL176_RS04865	COG3976	FMN-binding domain protein
CL176_RS04865	COG1053	succinate dehydrogenase
CL176_RS04865	COG0431	NADPH-dependent FMN reductase
CL176_RS04880	COG1842	Phage shock protein A
CL176_RS04900	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CL176_RS04915	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CL176_RS04925	COG1263	PTS System
CL176_RS04925	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS04930	COG0366	Alpha amylase catalytic
CL176_RS04935	COG0542	response to heat
CL176_RS04940	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CL176_RS04945	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CL176_RS04950	COG0022	dehydrogenase e1 component
CL176_RS04955	COG0508	dehydrogenase complex catalyzes the overall conversion of
CL176_RS04960	COG3344	reverse transcriptase
CL176_RS04970	COG3583	domain protein
CL176_RS04980	COG0726	polysaccharide deacetylase
CL176_RS04985	COG0571	ribonuclease III activity
CL176_RS04990	COG1196	nuclear chromosome segregation
CL176_RS04995	COG0561	phosphatase activity
CL176_RS05000	COG0552	protein localization to endoplasmic reticulum
CL176_RS05005	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CL176_RS05010	COG1302	Protein conserved in bacteria
CL176_RS05015	COG1461	Dihydroxyacetone kinase
CL176_RS05020	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CL176_RS05030	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CL176_RS05035	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CL176_RS05050	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CL176_RS05055	COG1104	cysteine desulfurase activity
CL176_RS05065	COG0482	sulfurtransferase activity
CL176_RS05075	COG0719	Fe-S assembly protein
CL176_RS05080	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CL176_RS05085	COG0822	iron-sulfur transferase activity
CL176_RS05090	COG0719	Fe-S assembly protein
CL176_RS05100	COG0604	alcohol dehydrogenase
CL176_RS05115	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CL176_RS05120	COG1597	lipid kinase activity
CL176_RS05135	COG1732	Glycine betaine
CL176_RS05155	COG0561	phosphatase activity
CL176_RS05160	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CL176_RS05170	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CL176_RS05180	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CL176_RS05185	COG0572	uridine kinase
CL176_RS05190	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CL176_RS05200	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CL176_RS05205	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CL176_RS05210	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CL176_RS05230	COG2197	response regulator
CL176_RS05235	COG4841	protein insertion into membrane
CL176_RS05240	COG0628	permease
CL176_RS05250	COG0693	protein deglycase activity
CL176_RS05255	COG1803	Methylglyoxal synthase
CL176_RS05260	COG0542	response to heat
CL176_RS05265	COG3344	reverse transcriptase
CL176_RS05270	COG3344	reverse transcriptase
CL176_RS05290	COG0628	permease
CL176_RS05295	COG1030	water channel activity
CL176_RS05300	COG4864	UPF0365 protein
CL176_RS05320	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CL176_RS05325	COG0528	UMP kinase activity
CL176_RS05330	COG0233	cytoplasmic translational termination
CL176_RS05335	COG3976	FMN-binding domain protein
CL176_RS05335	COG1053	succinate dehydrogenase
CL176_RS05350	COG4589	Belongs to the CDS family
CL176_RS05355	COG0750	zinc metalloprotease
CL176_RS05360	COG2176	DNA-directed DNA polymerase activity
CL176_RS05365	COG0431	NADPH-dependent FMN reductase
CL176_RS05370	COG0779	Required for maturation of 30S ribosomal subunits
CL176_RS05375	COG0195	Participates in both transcription termination and antitermination
CL176_RS05380	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CL176_RS05395	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CL176_RS05400	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CL176_RS05405	COG0196	riboflavin kinase activity
CL176_RS05415	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CL176_RS05420	COG0443	Heat shock 70 kDa protein
CL176_RS05425	COG0484	heat shock protein binding
CL176_RS05430	COG0481	GTPase activity
CL176_RS05435	COG2610	gluconate transmembrane transporter activity
CL176_RS05440	COG0783	Belongs to the Dps family
CL176_RS05445	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CL176_RS05470	COG0402	S-adenosylhomocysteine deaminase activity
CL176_RS05475	COG1012	belongs to the aldehyde dehydrogenase family
CL176_RS05485	COG1388	LysM domain
CL176_RS05530	COG1725	Transcriptional regulator
CL176_RS05605	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CL176_RS05645	COG3620	sequence-specific DNA binding
CL176_RS05680	COG2003	Belongs to the UPF0758 family
CL176_RS05685	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CL176_RS05750	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CL176_RS05750	COG3064	Membrane
CL176_RS05780	COG1475	DNA binding
CL176_RS05785	COG1192	Involved in chromosome partitioning
CL176_RS05815	COG1263	PTS System
CL176_RS05815	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS05815	COG2190	(PTS) system
CL176_RS05820	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CL176_RS05835	COG1454	alcohol dehydrogenase
CL176_RS05835	COG1012	belongs to the aldehyde dehydrogenase family
CL176_RS05845	COG0860	N-Acetylmuramoyl-L-alanine amidase
CL176_RS05850	COG1705	Flagellar rod assembly protein muramidase FlgJ
CL176_RS05850	COG1388	LysM domain
CL176_RS05855	COG4942	peptidase
CL176_RS05865	COG2824	Alkylphosphonate utilization operon protein PhnA
CL176_RS05870	COG0765	amino acid transport
CL176_RS05910	COG2205	protein histidine kinase activity
CL176_RS05910	COG0745	RESPONSE REGULATOR receiver
CL176_RS05910	COG3292	Two component regulator propeller
CL176_RS05920	COG4120	Belongs to the binding-protein-dependent transport system permease family
CL176_RS05930	COG1293	RNA-binding protein homologous to eukaryotic snRNP
CL176_RS05935	COG1227	inorganic diphosphatase activity
CL176_RS05940	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CL176_RS05945	COG0187	DNA topoisomerase II activity
CL176_RS05950	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CL176_RS05960	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CL176_RS05965	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CL176_RS05970	COG4974	Belongs to the 'phage' integrase family
CL176_RS05975	COG0446	pyridine nucleotide-disulphide oxidoreductase
CL176_RS05980	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CL176_RS05985	COG0758	DNA mediated transformation
CL176_RS05995	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CL176_RS06000	COG0681	Belongs to the peptidase S26 family
CL176_RS06005	COG3409	Peptidoglycan-binding domain 1 protein
CL176_RS06005	COG0793	Belongs to the peptidase S41A family
CL176_RS06010	COG4479	Belongs to the UPF0346 family
CL176_RS06015	COG1272	protein, Hemolysin III
CL176_RS06020	COG0671	phosphoesterase, PA-phosphatase related
CL176_RS06030	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CL176_RS06035	COG0488	(ABC) transporter
CL176_RS06040	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CL176_RS06045	COG2759	Belongs to the formate--tetrahydrofolate ligase family
CL176_RS06070	COG1564	THIamine pyrophosphokinase
CL176_RS06075	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CL176_RS06080	COG1162	GTPase activity
CL176_RS06085	COG2815	serine threonine protein kinase
CL176_RS06085	COG0515	serine threonine protein kinase
CL176_RS06090	COG0631	protein serine/threonine phosphatase activity
CL176_RS06095	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CL176_RS06095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CL176_RS06100	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CL176_RS06105	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CL176_RS06110	COG1758	RNA polymerase activity
CL176_RS06115	COG0194	GDP metabolic process
CL176_RS06120	COG1394	ATPase activity, coupled to movement of substances
CL176_RS06125	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
CL176_RS06130	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
CL176_RS06135	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
CL176_RS06140	COG1527	subunit (C
CL176_RS06150	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CL176_RS06155	COG1269	ATP hydrolysis coupled proton transport
CL176_RS06270	COG1185	polyribonucleotide nucleotidyltransferase activity
CL176_RS06280	COG0577	efflux transmembrane transporter activity
CL176_RS06285	COG0577	efflux transmembrane transporter activity
CL176_RS06285	COG1136	(ABC) transporter
CL176_RS06300	COG1473	amidohydrolase
CL176_RS06305	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CL176_RS06310	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CL176_RS06310	COG2755	lipolytic protein G-D-S-L family
CL176_RS06315	COG0556	nucleotide-excision repair
CL176_RS06320	COG0268	Binds directly to 16S ribosomal RNA
CL176_RS06330	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CL176_RS06340	COG0772	Belongs to the SEDS family
CL176_RS06345	COG1295	ribonuclease BN
CL176_RS06360	COG1914	H( )-stimulated, divalent metal cation uptake system
CL176_RS06365	COG0010	Belongs to the arginase family
CL176_RS06375	COG0596	Alpha beta hydrolase
CL176_RS06380	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CL176_RS06385	COG1126	abc transporter atp-binding protein
CL176_RS06395	COG0765	amino acid transport
CL176_RS06405	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CL176_RS06420	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CL176_RS06430	COG0019	diaminopimelate decarboxylase activity
CL176_RS06440	COG0431	NADPH-dependent FMN reductase
CL176_RS06440	COG3976	FMN-binding domain protein
CL176_RS06440	COG1053	succinate dehydrogenase
CL176_RS06445	COG1053	succinate dehydrogenase
CL176_RS06445	COG3976	FMN-binding domain protein
CL176_RS06445	COG0431	NADPH-dependent FMN reductase
CL176_RS06455	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CL176_RS06485	COG1175	transmembrane transport
CL176_RS06495	COG3842	ATPase activity
CL176_RS06550	COG3976	FMN-binding domain protein
CL176_RS06550	COG1053	succinate dehydrogenase
CL176_RS06555	COG1053	succinate dehydrogenase
CL176_RS06555	COG3976	FMN-binding domain protein
CL176_RS06580	COG3976	FMN-binding domain protein
CL176_RS06580	COG1053	succinate dehydrogenase
CL176_RS06590	COG1053	succinate dehydrogenase
CL176_RS06615	COG2382	esterase
CL176_RS06620	COG0514	ATP-dependent DNA helicase (RecQ)
CL176_RS06630	COG2151	metal-sulfur cluster biosynthetic enzyme
CL176_RS06635	COG0561	phosphatase activity
CL176_RS06655	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CL176_RS06660	COG1959	2 iron, 2 sulfur cluster binding
CL176_RS06670	COG1125	glycine betaine transport
CL176_RS06670	COG0517	IMP dehydrogenase activity
CL176_RS06675	COG1837	Belongs to the UPF0109 family
CL176_RS06680	COG0228	four-way junction DNA binding
CL176_RS06685	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CL176_RS06690	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
CL176_RS06730	COG3976	FMN-binding domain protein
CL176_RS06730	COG1053	succinate dehydrogenase
CL176_RS06745	COG3344	reverse transcriptase
CL176_RS06750	COG3344	reverse transcriptase
CL176_RS06755	COG2190	(PTS) system
CL176_RS06755	COG2211	Major facilitator Superfamily
CL176_RS06760	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CL176_RS06760	COG0517	IMP dehydrogenase activity
CL176_RS06765	COG1486	melibiose metabolic process
CL176_RS06770	COG1263	PTS System
CL176_RS06770	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS06775	COG1053	succinate dehydrogenase
CL176_RS06775	COG3976	FMN-binding domain protein
CL176_RS06780	COG1609	Transcriptional regulator
CL176_RS06785	COG1621	beta-fructofuranosidase activity
CL176_RS06795	COG1940	carbohydrate kinase activity
CL176_RS06800	COG1621	beta-fructofuranosidase activity
CL176_RS06805	COG2190	(PTS) system
CL176_RS06805	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS06805	COG1263	PTS System
CL176_RS06810	COG1609	Transcriptional regulator
CL176_RS06825	COG3842	ATPase activity
CL176_RS06835	COG1176	ABC-type spermidine putrescine transport system, permease component I
CL176_RS06840	COG1012	belongs to the aldehyde dehydrogenase family
CL176_RS06845	COG1012	belongs to the aldehyde dehydrogenase family
CL176_RS06860	COG4372	Transposase
CL176_RS06875	COG2217	Heavy metal translocating P-type atpase
CL176_RS06880	COG1301	dicarboxylic acid transport
CL176_RS06895	COG3976	FMN-binding domain protein
CL176_RS06895	COG0431	NADPH-dependent FMN reductase
CL176_RS06895	COG1053	succinate dehydrogenase
CL176_RS06915	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CL176_RS06925	COG0786	glutamate:sodium symporter activity
CL176_RS06935	COG3485	protocatechuate 3,4-dioxygenase
CL176_RS06945	COG3485	protocatechuate 3,4-dioxygenase
CL176_RS06950	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CL176_RS06970	COG1473	amidohydrolase
CL176_RS06985	COG1473	amidohydrolase
CL176_RS07000	COG5646	InterPro IPR014922
CL176_RS07090	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CL176_RS07115	COG0450	alkyl hydroperoxide reductase
CL176_RS07140	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS07140	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CL176_RS07140	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CL176_RS07150	COG1482	cell wall glycoprotein biosynthetic process
CL176_RS07155	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CL176_RS07175	COG2323	membrane
CL176_RS07185	COG0140	phosphoribosyl-ATP diphosphatase activity
CL176_RS07185	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CL176_RS07190	COG0107	imidazoleglycerol-phosphate synthase activity
CL176_RS07195	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CL176_RS07200	COG0131	Imidazoleglycerol-phosphate dehydratase
CL176_RS07210	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CL176_RS07215	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CL176_RS07225	COG1473	amidohydrolase
CL176_RS07230	COG0167	dihydroorotate dehydrogenase activity
CL176_RS07245	COG0540	Belongs to the ATCase OTCase family
CL176_RS07250	COG1132	(ABC) transporter
CL176_RS07255	COG1132	(ABC) transporter
CL176_RS07260	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CL176_RS07265	COG1393	Belongs to the ArsC family
CL176_RS07270	COG1764	response to oxidative stress
CL176_RS07280	COG1132	(ABC) transporter
CL176_RS07310	COG0640	Transcriptional regulator
CL176_RS07345	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CL176_RS07350	COG4684	Psort location CytoplasmicMembrane, score
CL176_RS07360	COG0564	pseudouridine synthase activity
CL176_RS07365	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CL176_RS07380	COG1074	ATP-dependent DNA helicase activity
CL176_RS07385	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
CL176_RS07395	COG2195	Cleaves the N-terminal amino acid of tripeptides
CL176_RS07405	COG2384	SAM-dependent methyltransferase
CL176_RS07410	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CL176_RS07415	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CL176_RS07420	COG0358	DNA primase activity
CL176_RS07425	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CL176_RS07430	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CL176_RS07435	COG0544	peptidyl-prolyl cis-trans isomerase activity
CL176_RS07445	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CL176_RS07450	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CL176_RS07465	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CL176_RS07490	COG5582	Belongs to the UPF0302 family
CL176_RS07510	COG0539	negative regulation of cytoplasmic translation
CL176_RS07515	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CL176_RS07525	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CL176_RS07530	COG1187	pseudouridine synthase activity
CL176_RS07535	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CL176_RS07555	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CL176_RS07575	COG0205	6-phosphofructokinase activity
CL176_RS07580	COG0587	DNA-directed DNA polymerase activity
CL176_RS07585	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CL176_RS07590	COG2255	four-way junction helicase activity
CL176_RS07605	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CL176_RS07610	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CL176_RS07620	COG1132	(ABC) transporter
CL176_RS07625	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CL176_RS07635	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CL176_RS07645	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CL176_RS07650	COG1058	Belongs to the CinA family
CL176_RS07650	COG1546	Belongs to the CinA family
CL176_RS07655	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CL176_RS07660	COG1426	Protein conserved in bacteria
CL176_RS07665	COG0612	Peptidase, M16
CL176_RS07670	COG0612	Peptidase, M16
CL176_RS07680	COG1079	Belongs to the binding-protein-dependent transport system permease family
CL176_RS07685	COG4603	Belongs to the binding-protein-dependent transport system permease family
CL176_RS07690	COG3845	ABC transporter
CL176_RS07695	COG1744	ABC transporter substrate-binding protein PnrA-like
CL176_RS07700	COG1674	ftsk spoiiie
CL176_RS07705	COG1254	Belongs to the acylphosphatase family
CL176_RS07710	COG0706	membrane insertase activity
CL176_RS07715	COG5002	protein histidine kinase activity
CL176_RS07725	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CL176_RS07730	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CL176_RS07735	COG1940	carbohydrate kinase activity
CL176_RS07745	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CL176_RS07765	COG0768	penicillin binding
CL176_RS07780	COG3830	Belongs to the UPF0237 family
CL176_RS07785	COG2848	UPF0210 protein
CL176_RS07790	COG2801	Transposase and inactivated derivatives
CL176_RS07800	COG0513	Belongs to the DEAD box helicase family
CL176_RS07805	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CL176_RS07810	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CL176_RS07815	COG4109	DRTGG domain
CL176_RS07820	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CL176_RS07825	COG1862	Preprotein translocase
CL176_RS07830	COG0343	queuine tRNA-ribosyltransferase activity
CL176_RS07840	COG0204	Acyl-transferase
CL176_RS07855	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CL176_RS07860	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CL176_RS07865	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CL176_RS07865	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CL176_RS07875	COG0300	oxidoreductase activity
CL176_RS07880	COG1234	tRNA 3'-trailer cleavage
CL176_RS07885	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CL176_RS07885	COG2755	lipolytic protein G-D-S-L family
CL176_RS07890	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CL176_RS07895	COG0751	glycine-tRNA ligase activity
CL176_RS07905	COG1381	Involved in DNA repair and RecF pathway recombination
CL176_RS07910	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CL176_RS07915	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CL176_RS07920	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CL176_RS07930	COG1702	phosphate starvation-inducible protein PhoH
CL176_RS07935	COG1610	YqeY-like protein
CL176_RS07940	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CL176_RS07945	COG0735	belongs to the Fur family
CL176_RS07950	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CL176_RS07955	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CL176_RS07960	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CL176_RS07965	COG0124	histidyl-tRNA synthetase
CL176_RS07975	COG0488	(ABC) transporter
CL176_RS07980	COG0860	N-Acetylmuramoyl-L-alanine amidase
CL176_RS07985	COG1490	D-aminoacyl-tRNA deacylase activity
CL176_RS07990	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CL176_RS08005	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CL176_RS08010	COG2264	protein methyltransferase activity
CL176_RS08020	COG3599	regulation of cell shape
CL176_RS08030	COG0116	Belongs to the methyltransferase superfamily
CL176_RS08035	COG0328	RNA-DNA hybrid ribonuclease activity
CL176_RS08050	COG1597	lipid kinase activity
CL176_RS08070	COG1473	amidohydrolase
CL176_RS08075	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CL176_RS08085	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CL176_RS08090	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CL176_RS08100	COG0301	tRNA thio-modification
CL176_RS08105	COG1104	cysteine desulfurase activity
CL176_RS08115	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
CL176_RS08125	COG1126	abc transporter atp-binding protein
CL176_RS08130	COG0765	amino acid transport
CL176_RS08135	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CL176_RS08145	COG0494	nUDIX hydrolase
CL176_RS08155	COG3853	Toxic anion resistance protein (TelA)
CL176_RS08165	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CL176_RS08170	COG3599	regulation of cell shape
CL176_RS08180	COG0762	integral membrane protein
CL176_RS08190	COG0849	cell division
CL176_RS08195	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CL176_RS08205	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CL176_RS08215	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CL176_RS08220	COG0768	penicillin binding
CL176_RS08235	COG2001	Belongs to the MraZ family
CL176_RS08250	COG1077	Cell shape determining protein MreB Mrl
CL176_RS08255	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CL176_RS08265	COG3425	synthase
CL176_RS08275	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CL176_RS08280	COG0009	L-threonylcarbamoyladenylate synthase
CL176_RS08285	COG2890	protein-(glutamine-N5) methyltransferase activity
CL176_RS08290	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CL176_RS08295	COG1435	thymidine kinase activity
CL176_RS08305	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CL176_RS08310	COG1811	Na channel or pump
CL176_RS08320	COG0628	permease
CL176_RS08325	COG2706	6-phosphogluconolactonase activity
CL176_RS08335	COG1968	undecaprenyl-diphosphatase activity
CL176_RS08340	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CL176_RS08345	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CL176_RS08350	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CL176_RS08355	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CL176_RS08370	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CL176_RS08380	COG0537	adenosine 5'-monophosphoramidase activity
CL176_RS08410	COG4717	serine-type aminopeptidase activity
CL176_RS08415	COG0420	3'-5' exonuclease activity
CL176_RS08420	COG3679	Belongs to the UPF0342 family
CL176_RS08425	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CL176_RS08430	COG0297	glycogen (starch) synthase activity
CL176_RS08435	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CL176_RS08440	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CL176_RS08455	COG0346	lactoylglutathione lyase activity
CL176_RS08460	COG0295	cytidine deaminase activity
CL176_RS08480	COG0058	SHG alpha-glucan phosphorylase activity
CL176_RS08490	COG0217	transcriptional regulatory protein
CL176_RS08495	COG2135	peptidase activity
CL176_RS08505	COG0628	permease
CL176_RS08510	COG0765	amino acid transport
CL176_RS08515	COG1126	abc transporter atp-binding protein
CL176_RS08520	COG1876	peptidase activity
CL176_RS08525	COG0656	L-ascorbic acid biosynthetic process
CL176_RS08530	COG3853	Toxic anion resistance protein (TelA)
CL176_RS08550	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CL176_RS08555	COG0826	peptidase U32
CL176_RS08560	COG0826	peptidase U32
CL176_RS08570	COG2217	Heavy metal translocating P-type atpase
CL176_RS08590	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CL176_RS08615	COG0469	pyruvate kinase activity
CL176_RS08625	COG1126	abc transporter atp-binding protein
CL176_RS08630	COG0765	amino acid transport
CL176_RS08635	COG0719	Fe-S assembly protein
CL176_RS08640	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CL176_RS08645	COG0251	oxidation-reduction process
CL176_RS08650	COG2151	metal-sulfur cluster biosynthetic enzyme
CL176_RS08655	COG0129	dihydroxy-acid dehydratase activity
CL176_RS08660	COG0028	Belongs to the TPP enzyme family
CL176_RS08665	COG0440	acetolactate synthase activity
CL176_RS08670	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CL176_RS08675	COG1119	ATPase activity
CL176_RS08695	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CL176_RS08700	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CL176_RS08705	COG1116	anion transmembrane transporter activity
CL176_RS08725	COG1164	Oligoendopeptidase f
CL176_RS08730	COG1028	Short-chain dehydrogenase reductase Sdr
CL176_RS08760	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CL176_RS08765	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CL176_RS08770	COG1397	ADP-ribosylglycohydrolase
CL176_RS08785	COG3716	PTS system mannose fructose sorbose family IID component
CL176_RS08795	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS08795	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS08805	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
CL176_RS08810	COG1492	cobalamin metabolic process
CL176_RS08815	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CL176_RS08835	COG0280	phosphate acetyltransferase
CL176_RS08845	COG1902	pentaerythritol trinitrate reductase activity
CL176_RS08850	COG3192	ethanolamine utilization protein
CL176_RS08865	COG4869	propanediol catabolic process
CL176_RS08880	COG1012	belongs to the aldehyde dehydrogenase family
CL176_RS08880	COG1454	alcohol dehydrogenase
CL176_RS08895	COG4302	ethanolamine ammonia-lyase activity
CL176_RS08900	COG4303	Ethanolamine ammonia lyase large subunit
CL176_RS08925	COG2096	Adenosyltransferase
CL176_RS08930	COG4917	ethanolamine utilization protein
CL176_RS08945	COG4372	Transposase
CL176_RS08955	COG1120	ATPase activity
CL176_RS08960	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CL176_RS08985	COG0113	porphobilinogen synthase activity
CL176_RS08995	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CL176_RS09000	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CL176_RS09000	COG1648	precorrin-2 dehydrogenase activity
CL176_RS09005	COG2096	Adenosyltransferase
CL176_RS09020	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CL176_RS09020	COG1587	Uroporphyrinogen-III synthase
CL176_RS09055	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
CL176_RS09065	COG1797	cobyrinic acid a,c-diamide synthase activity
CL176_RS09070	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CL176_RS09075	COG0716	FMN binding
CL176_RS09080	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CL176_RS09095	COG1120	ATPase activity
CL176_RS09100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CL176_RS09135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CL176_RS09150	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CL176_RS09175	COG2514	catechol 2,3-dioxygenase activity
CL176_RS09180	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CL176_RS09200	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CL176_RS09225	COG0431	NADPH-dependent FMN reductase
CL176_RS09250	COG2814	Major facilitator Superfamily
CL176_RS09255	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CL176_RS09260	COG0284	orotidine-5'-phosphate decarboxylase activity
CL176_RS09300	COG0084	hydrolase, TatD family'
CL176_RS09305	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CL176_RS09315	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CL176_RS09320	COG0302	gtp cyclohydrolase
CL176_RS09325	COG1418	mRNA catabolic process
CL176_RS09330	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CL176_RS09330	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CL176_RS09340	COG0285	dihydrofolate synthase activity
CL176_RS09345	COG1253	flavin adenine dinucleotide binding
CL176_RS09350	COG1464	Belongs to the NlpA lipoprotein family
CL176_RS09355	COG3842	ATPase activity
CL176_RS09370	COG1175	transmembrane transport
CL176_RS09375	COG0395	ABC-type sugar transport system, permease component
CL176_RS09400	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
CL176_RS09405	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CL176_RS09410	COG2017	converts alpha-aldose to the beta-anomer
CL176_RS09435	COG2801	Transposase and inactivated derivatives
CL176_RS09440	COG3250	beta-galactosidase activity
CL176_RS09445	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CL176_RS09455	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CL176_RS09465	COG2017	converts alpha-aldose to the beta-anomer
CL176_RS09470	COG2169	Transcriptional regulator
CL176_RS09475	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CL176_RS09485	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CL176_RS09515	COG0602	queuosine metabolic process
CL176_RS09520	COG1328	CTP reductase activity
CL176_RS09545	COG2337	Toxic component of a toxin-antitoxin (TA) module
CL176_RS09550	COG3457	Alanine racemase
CL176_RS09560	COG2217	Heavy metal translocating P-type atpase
CL176_RS09565	COG2217	Heavy metal translocating P-type atpase
CL176_RS09605	COG1388	LysM domain
CL176_RS09605	COG1705	Flagellar rod assembly protein muramidase FlgJ
CL176_RS09625	COG0732	type I restriction modification DNA specificity domain
CL176_RS09635	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CL176_RS09670	COG1028	Short-chain dehydrogenase reductase Sdr
CL176_RS09675	COG0561	phosphatase activity
CL176_RS09695	COG1725	Transcriptional regulator
CL176_RS09710	COG2205	protein histidine kinase activity
CL176_RS09750	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CL176_RS09755	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CL176_RS09770	COG1484	DNA-dependent DNA replication
CL176_RS09815	COG2205	protein histidine kinase activity
CL176_RS09850	COG0745	RESPONSE REGULATOR receiver
CL176_RS09945	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CL176_RS09985	COG3843	relaxase mobilization nuclease domain protein
CL176_RS09995	COG1396	sequence-specific DNA binding
CL176_RS10000	COG1396	sequence-specific DNA binding
CL176_RS10015	COG4555	ABC transporter
CL176_RS10095	COG0741	lytic transglycosylase activity
CL176_RS10095	COG0791	NLP P60 protein
CL176_RS10125	COG4166	transmembrane transport
CL176_RS10130	COG3949	Membrane
CL176_RS10135	COG0285	dihydrofolate synthase activity
CL176_RS10155	COG2326	polyphosphate kinase activity
CL176_RS10160	COG0564	pseudouridine synthase activity
CL176_RS10165	COG0753	catalase activity
CL176_RS10170	COG2084	Dehydrogenase
CL176_RS10175	COG0179	Fumarylacetoacetate (FAA) hydrolase
CL176_RS10180	COG0179	Fumarylacetoacetate (FAA) hydrolase
CL176_RS10200	COG1309	transcriptional regulator
CL176_RS10205	COG0110	maltose O-acetyltransferase activity
CL176_RS10220	COG0436	Aminotransferase
CL176_RS10230	COG0561	phosphatase activity
CL176_RS10245	COG0243	molybdopterin cofactor binding
CL176_RS10255	COG1120	ATPase activity
CL176_RS10260	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CL176_RS10265	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CL176_RS10435	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CL176_RS10440	COG1854	S-ribosylhomocysteine lyase activity
CL176_RS10450	COG0561	phosphatase activity
CL176_RS10460	COG3001	Fructosamine kinase
CL176_RS10465	COG2183	response to ionizing radiation
CL176_RS10505	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CL176_RS10510	COG1687	branched-chain amino acid
CL176_RS10515	COG0561	phosphatase activity
CL176_RS10520	COG2032	superoxide dismutase activity
CL176_RS10540	COG1757	Na H antiporter
CL176_RS10545	COG0667	Aldo Keto reductase
CL176_RS10555	COG0516	GMP reductase activity
CL176_RS10565	COG1263	PTS System
CL176_RS10565	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CL176_RS10575	COG3142	Participates in the control of copper homeostasis
CL176_RS10585	COG3189	MarR family transcriptional regulator
CL176_RS10590	COG0018	arginyl-trna synthetase
CL176_RS10600	COG3764	Sortase (surface protein transpeptidase)
CL176_RS10610	COG1380	Effector of murein hydrolase LrgA
CL176_RS10615	COG1346	cytolysis
CL176_RS10625	COG0083	homoserine kinase activity
CL176_RS10630	COG0460	homoserine dehydrogenase
CL176_RS10635	COG0527	aspartate kinase activity
CL176_RS10640	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CL176_RS10645	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CL176_RS10650	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CL176_RS10655	COG0693	protein deglycase activity
CL176_RS10670	COG1744	ABC transporter substrate-binding protein PnrA-like
CL176_RS10690	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CL176_RS10695	COG1640	4-alpha-glucanotransferase
CL176_RS10700	COG2217	Heavy metal translocating P-type atpase
CL176_RS10710	COG1523	belongs to the glycosyl hydrolase 13 family
CL176_RS10720	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
CL176_RS10735	COG0786	glutamate:sodium symporter activity
CL176_RS10740	COG1131	(ABC) transporter
CL176_RS10760	COG2197	response regulator
CL176_RS10785	COG0519	Catalyzes the synthesis of GMP from XMP
CL176_RS10785	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CL176_RS10790	COG1072	(Pantothenic acid kinase))
CL176_RS10810	COG1304	FMN binding
CL176_RS10825	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
CL176_RS10830	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CL176_RS10845	COG1136	(ABC) transporter
CL176_RS10845	COG0577	efflux transmembrane transporter activity
CL176_RS10850	COG0596	Alpha beta hydrolase
CL176_RS10860	COG0463	Glycosyl transferase, family 2
CL176_RS10875	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CL176_RS10895	COG0280	phosphate acetyltransferase
CL176_RS10925	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CL176_RS10930	COG0488	(ABC) transporter
CL176_RS10935	COG0217	transcriptional regulatory protein
CL176_RS10940	COG0386	Belongs to the glutathione peroxidase family
CL176_RS10950	COG3620	sequence-specific DNA binding
CL176_RS10950	COG0617	tRNA 3'-terminal CCA addition
CL176_RS10950	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CL176_RS10970	COG0559	Belongs to the binding-protein-dependent transport system permease family
CL176_RS10980	COG0039	L-malate dehydrogenase activity
CL176_RS10990	COG0066	3-isopropylmalate dehydratase activity
CL176_RS11000	COG0066	3-isopropylmalate dehydratase activity
CL176_RS11005	COG0473	3-isopropylmalate dehydrogenase activity
CL176_RS11035	COG1131	(ABC) transporter
CL176_RS11045	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CL176_RS11055	COG0588	phosphoglycerate mutase activity
CL176_RS11060	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CL176_RS11065	COG1121	(ABC) transporter
CL176_RS11070	COG0803	Belongs to the bacterial solute-binding protein 9 family
CL176_RS11100	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CL176_RS11105	COG2059	Chromate
CL176_RS11115	COG0583	DNA-binding transcription factor activity
CL176_RS11135	COG0101	tRNA pseudouridine synthase activity
CL176_RS11145	COG1122	ATPase activity
CL176_RS11150	COG1122	ATPase activity
CL176_RS11155	COG0203	ribosomal protein L17
CL176_RS11160	COG0202	RNA polymerase activity
CL176_RS11170	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CL176_RS11175	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CL176_RS11180	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CL176_RS11190	COG0201	protein transport
CL176_RS11195	COG0200	Binds to the 23S rRNA
CL176_RS11205	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CL176_RS11210	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CL176_RS11215	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CL176_RS11220	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CL176_RS11230	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CL176_RS11240	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CL176_RS11245	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CL176_RS11270	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CL176_RS11275	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CL176_RS11280	COG0089	rRNA binding
CL176_RS11285	COG0088	Forms part of the polypeptide exit tunnel
CL176_RS11290	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CL176_RS11295	COG0051	transcription antitermination factor activity, RNA binding
CL176_RS11300	COG2521	methyltransferase
CL176_RS11300	COG2136	Putative SAM-dependent methyltransferase
CL176_RS11310	COG1605	Chorismate mutase
CL176_RS11310	COG0077	Prephenate dehydratase
CL176_RS11315	COG1126	abc transporter atp-binding protein
CL176_RS11325	COG0668	transmembrane transport
CL176_RS11330	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CL176_RS11335	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CL176_RS11340	COG0049	tRNA binding
CL176_RS11345	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CL176_RS11350	COG1668	transmembrane transport
CL176_RS11355	COG4152	abc transporter atp-binding protein
CL176_RS11365	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CL176_RS11370	COG1045	serine acetyltransferase
CL176_RS11375	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CL176_RS11390	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CL176_RS11395	COG0037	tRNA processing
CL176_RS11400	COG0745	RESPONSE REGULATOR receiver
CL176_RS11405	COG5002	protein histidine kinase activity
CL176_RS11410	COG1098	S1 RNA binding domain
CL176_RS11420	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CL176_RS11425	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CL176_RS11430	COG0193	aminoacyl-tRNA hydrolase activity
CL176_RS11435	COG4466	Protein conserved in bacteria
CL176_RS11445	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CL176_RS11450	COG0084	hydrolase, TatD family'
CL176_RS11455	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CL176_RS11455	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CL176_RS11465	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CL176_RS11475	COG2249	NAD(P)H dehydrogenase (quinone) activity
CL176_RS11480	COG5002	protein histidine kinase activity
CL176_RS11480	COG3850	Histidine kinase
CL176_RS11485	COG0745	RESPONSE REGULATOR receiver
CL176_RS11495	COG1481	regulation of sporulation
CL176_RS11505	COG1660	Displays ATPase and GTPase activities
CL176_RS11510	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CL176_RS11515	COG0492	ferredoxin-NADP+ reductase activity
CL176_RS11520	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CL176_RS11525	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CL176_RS11535	COG1983	PspC domain protein
CL176_RS11545	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CL176_RS11550	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CL176_RS11555	COG0704	Plays a role in the regulation of phosphate uptake
CL176_RS11560	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CL176_RS11565	COG0581	inorganic phosphate transmembrane transporter activity
CL176_RS11570	COG0573	inorganic phosphate transmembrane transporter activity
CL176_RS11575	COG5002	protein histidine kinase activity
CL176_RS11580	COG0745	RESPONSE REGULATOR receiver
CL176_RS11585	COG2177	Part of the ABC transporter FtsEX involved in
CL176_RS11590	COG2884	Cell division ATP-binding protein ftsE
CL176_RS11595	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CL176_RS11600	COG0653	protein targeting
CL176_RS11615	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
CL176_RS11625	COG1597	lipid kinase activity
CL176_RS11630	COG0446	pyridine nucleotide-disulphide oxidoreductase
CL176_RS11645	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CL176_RS11650	COG1739	Uncharacterized protein family UPF0029
CL176_RS11655	COG1307	EDD domain protein, DegV family
CL176_RS11660	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CL176_RS11665	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CL176_RS11670	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CL176_RS11680	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CL176_RS11685	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CL176_RS11695	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CL176_RS11705	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS11710	COG3711	transcriptional antiterminator
CL176_RS11715	COG2213	PTS system mannitol-specific
CL176_RS11720	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CL176_RS11725	COG1121	(ABC) transporter
CL176_RS11730	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
CL176_RS11735	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CL176_RS11740	COG2738	Putative neutral zinc metallopeptidase
CL176_RS11755	COG4120	Belongs to the binding-protein-dependent transport system permease family
CL176_RS11790	COG1132	(ABC) transporter
CL176_RS11805	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CL176_RS11815	COG0640	Transcriptional regulator
CL176_RS11840	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CL176_RS11850	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CL176_RS11855	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CL176_RS11870	COG1268	BioY protein
CL176_RS11875	COG0656	L-ascorbic acid biosynthetic process
CL176_RS11880	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CL176_RS11880	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CL176_RS11880	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CL176_RS11885	COG1105	Belongs to the carbohydrate kinase PfkB family
CL176_RS11890	COG1349	DNA-binding transcription factor activity
CL176_RS11895	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CL176_RS11940	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CL176_RS11955	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CL176_RS11965	COG2813	Specifically methylates the guanine in position
CL176_RS11970	COG0561	phosphatase activity
CL176_RS11980	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CL176_RS11985	COG0081	regulation of translation
CL176_RS11995	COG0656	L-ascorbic acid biosynthetic process
CL176_RS12000	COG2030	dehydratase
CL176_RS12010	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CL176_RS12010	COG3976	FMN-binding domain protein
CL176_RS12030	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CL176_RS12035	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CL176_RS12045	COG3688	RNA-binding protein containing a PIN domain
CL176_RS12050	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CL176_RS12055	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CL176_RS12060	COG0215	cysteine-tRNA ligase activity
CL176_RS12065	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CL176_RS12070	COG4956	integral membrane protein (PIN domain superfamily)
CL176_RS12080	COG0756	dUTP diphosphatase activity
CL176_RS12090	COG0174	glutamine synthetase
CL176_RS12100	COG0305	Participates in initiation and elongation during chromosome replication
CL176_RS12105	COG0359	binds to the 23S rRNA
CL176_RS12120	COG0629	single-stranded DNA binding
CL176_RS12125	COG0360	Binds together with S18 to 16S ribosomal RNA
CL176_RS12130	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CL176_RS12135	COG0187	DNA topoisomerase II activity