locus-tag	class	description
CAP31_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CAP31_RS00010	COG0592	DNA-directed DNA polymerase activity
CAP31_RS00025	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CAP31_RS00030	COG0271	Belongs to the BolA IbaG family
CAP31_RS00065	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CAP31_RS00070	COG2210	Belongs to the sulfur carrier protein TusA family
CAP31_RS00075	COG0583	DNA-binding transcription factor activity
CAP31_RS00090	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CAP31_RS00100	COG5554	nitrogen fixation
CAP31_RS00105	COG1104	cysteine desulfurase activity
CAP31_RS00120	COG5554	nitrogen fixation
CAP31_RS00140	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CAP31_RS00150	COG1950	PFAM Membrane protein of
CAP31_RS00190	COG1104	cysteine desulfurase activity
CAP31_RS00195	COG0822	iron-sulfur transferase activity
CAP31_RS00200	COG0316	Belongs to the HesB IscA family
CAP31_RS00205	COG0316	Belongs to the HesB IscA family
CAP31_RS00210	COG0443	Heat shock 70 kDa protein
CAP31_RS00220	COG0840	transmembrane signaling receptor activity
CAP31_RS00260	COG3411	Ferredoxin
CAP31_RS00270	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
CAP31_RS00280	COG0628	permease
CAP31_RS00285	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CAP31_RS00295	COG3852	Histidine kinase
CAP31_RS00305	COG0174	glutamine synthetase
CAP31_RS00315	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CAP31_RS00320	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CAP31_RS00340	COG0254	rRNA binding
CAP31_RS00375	COG0583	DNA-binding transcription factor activity
CAP31_RS00380	COG0501	Belongs to the peptidase M48B family
CAP31_RS00405	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CAP31_RS00410	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CAP31_RS00420	COG1592	Rubrerythrin
CAP31_RS00425	COG0583	DNA-binding transcription factor activity
CAP31_RS00435	COG0129	dihydroxy-acid dehydratase activity
CAP31_RS00445	COG4654	Cytochrome c, class I
CAP31_RS00485	COG1272	protein, Hemolysin III
CAP31_RS00495	COG0415	Belongs to the DNA photolyase family
CAP31_RS00500	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CAP31_RS00505	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CAP31_RS00510	COG0019	diaminopimelate decarboxylase activity
CAP31_RS00515	COG1965	Belongs to the frataxin family
CAP31_RS00545	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
CAP31_RS00550	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CAP31_RS00565	COG3220	belongs to the UPF0276 family
CAP31_RS00575	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CAP31_RS00590	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CAP31_RS00595	COG2813	Specifically methylates the guanine in position
CAP31_RS00595	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CAP31_RS00600	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CAP31_RS00620	COG0501	Belongs to the peptidase M48B family
CAP31_RS00625	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CAP31_RS00630	COG0242	peptide deformylase activity
CAP31_RS00635	COG1652	LysM domain
CAP31_RS00640	COG0758	DNA mediated transformation
CAP31_RS00645	COG2922	Belongs to the Smg family
CAP31_RS00680	COG0745	RESPONSE REGULATOR receiver
CAP31_RS00685	COG0642	Histidine kinase
CAP31_RS00740	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
CAP31_RS00750	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
CAP31_RS00765	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
CAP31_RS00770	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
CAP31_RS00785	COG5420	small protein containing a coiled-coil domain
CAP31_RS00790	COG4231	catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
CAP31_RS00820	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CAP31_RS00830	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
CAP31_RS00835	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CAP31_RS00835	COG4191	Histidine kinase
CAP31_RS00875	COG0625	glutathione transferase activity
CAP31_RS00890	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CAP31_RS00895	COG1702	phosphate starvation-inducible protein PhoH
CAP31_RS00900	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CAP31_RS00905	COG4535	Mg2 and Co2 transporter CorC
CAP31_RS00915	COG0469	pyruvate kinase activity
CAP31_RS00920	COG0126	phosphoglycerate kinase activity
CAP31_RS00925	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CAP31_RS00930	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CAP31_RS00945	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CAP31_RS00950	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CAP31_RS00950	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CAP31_RS00965	COG0488	(ABC) transporter
CAP31_RS00970	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CAP31_RS00980	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CAP31_RS00985	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CAP31_RS00990	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CAP31_RS00995	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CAP31_RS01000	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CAP31_RS01005	COG2003	Belongs to the UPF0758 family
CAP31_RS01010	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CAP31_RS01015	COG0756	dUTP diphosphatase activity
CAP31_RS01020	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CAP31_RS01025	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CAP31_RS01035	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CAP31_RS01040	COG1215	transferase activity, transferring glycosyl groups
CAP31_RS01085	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CAP31_RS01090	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CAP31_RS01100	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CAP31_RS01110	COG0438	transferase activity, transferring glycosyl groups
CAP31_RS01125	COG2197	response regulator
CAP31_RS01130	COG0300	oxidoreductase activity
CAP31_RS01135	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CAP31_RS01145	COG0018	arginyl-trna synthetase
CAP31_RS01150	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CAP31_RS01155	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CAP31_RS01155	COG0438	transferase activity, transferring glycosyl groups
CAP31_RS01160	COG0671	phosphoesterase, PA-phosphatase related
CAP31_RS01165	COG2833	Protein of unknown function (DUF455)
CAP31_RS01170	COG0360	Binds together with S18 to 16S ribosomal RNA
CAP31_RS01175	COG2965	DNA replication, synthesis of RNA primer
CAP31_RS01185	COG0359	binds to the 23S rRNA
CAP31_RS01190	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CAP31_RS01200	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CAP31_RS01205	COG1560	Kdo2-lipid A biosynthetic process
CAP31_RS01215	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CAP31_RS01220	COG0778	Nitroreductase
CAP31_RS01225	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CAP31_RS01230	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CAP31_RS01240	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CAP31_RS01245	COG0732	type I restriction modification DNA specificity domain
CAP31_RS01260	COG3177	Filamentation induced by cAMP protein fic
CAP31_RS01275	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
CAP31_RS01285	COG1451	nucleotide metabolic process
CAP31_RS01290	COG0165	Argininosuccinate lyase
CAP31_RS01325	COG0671	phosphoesterase, PA-phosphatase related
CAP31_RS01340	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
CAP31_RS01345	COG1116	anion transmembrane transporter activity
CAP31_RS01345	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CAP31_RS01350	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CAP31_RS01355	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CAP31_RS01360	COG2897	thiosulfate sulfurtransferase activity
CAP31_RS01395	COG3179	chitinase
CAP31_RS01410	COG0181	hydroxymethylbilane synthase activity
CAP31_RS01415	COG1587	Uroporphyrinogen-III synthase
CAP31_RS01420	COG2959	enzyme of heme biosynthesis
CAP31_RS01435	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CAP31_RS01450	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CAP31_RS01455	COG0418	dihydroorotase activity
CAP31_RS01460	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CAP31_RS01465	COG0792	nuclease activity
CAP31_RS01470	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CAP31_RS01475	COG2823	Periplasmic or secreted lipoprotein
CAP31_RS01480	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CAP31_RS01485	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CAP31_RS01500	COG0493	'glutamate synthase
CAP31_RS01500	COG0543	2 iron, 2 sulfur cluster binding
CAP31_RS01515	COG4521	taurine ABC transporter
CAP31_RS01520	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CAP31_RS01540	COG2188	Transcriptional regulator
CAP31_RS01555	COG1538	Outer membrane efflux protein
CAP31_RS01560	COG1566	PFAM secretion protein HlyD family protein
CAP31_RS01565	COG2814	Major facilitator Superfamily
CAP31_RS01590	COG1846	Transcriptional regulator
CAP31_RS01595	COG3038	cytochrome b561
CAP31_RS01600	COG2353	YceI-like domain
CAP31_RS01610	COG0598	Magnesium transport protein CorA
CAP31_RS01630	COG1067	ATP-dependent peptidase activity
CAP31_RS01635	COG1194	a g-specific adenine glycosylase
CAP31_RS01640	COG3134	Outer membrane lipoprotein
CAP31_RS01645	COG0084	hydrolase, TatD family'
CAP31_RS01670	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CAP31_RS01670	COG0543	2 iron, 2 sulfur cluster binding
CAP31_RS01690	COG1040	competence protein
CAP31_RS01700	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CAP31_RS01705	COG0156	8-amino-7-oxononanoate synthase activity
CAP31_RS01710	COG2267	carboxylic ester hydrolase activity
CAP31_RS01715	COG2226	methyltransferase
CAP31_RS01720	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CAP31_RS01735	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CAP31_RS01740	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CAP31_RS01760	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CAP31_RS01765	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CAP31_RS01775	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
CAP31_RS01780	COG0237	dephospho-CoA kinase activity
CAP31_RS01785	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CAP31_RS01800	COG4536	flavin adenine dinucleotide binding
CAP31_RS01810	COG0243	molybdopterin cofactor binding
CAP31_RS01815	COG0437	4 iron, 4 sulfur cluster binding
CAP31_RS01820	COG3302	dmso reductase anchor subunit
CAP31_RS01825	COG1054	Belongs to the UPF0176 family
CAP31_RS01830	COG0425	Belongs to the sulfur carrier protein TusA family
CAP31_RS01835	COG2210	Belongs to the sulfur carrier protein TusA family
CAP31_RS01865	COG2048	Heterodisulfide reductase, subunit B
CAP31_RS01870	COG0509	glycine decarboxylation via glycine cleavage system
CAP31_RS01880	COG0509	glycine decarboxylation via glycine cleavage system
CAP31_RS01890	COG0095	Lipoate-protein ligase
CAP31_RS01925	COG0752	glycyl-tRNA synthetase alpha subunit
CAP31_RS01935	COG1074	ATP-dependent DNA helicase activity
CAP31_RS01950	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CAP31_RS01955	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CAP31_RS01960	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CAP31_RS01965	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CAP31_RS01975	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CAP31_RS01985	COG0006	proline dipeptidase activity
CAP31_RS01990	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CAP31_RS01995	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CAP31_RS02025	COG3842	ATPase activity
CAP31_RS02050	COG0134	indole-3-glycerol-phosphate synthase activity
CAP31_RS02055	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CAP31_RS02070	COG0546	phosphoglycolate phosphatase activity
CAP31_RS02075	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CAP31_RS02080	COG2967	ApaG domain
CAP31_RS02100	COG0004	ammonium transporteR
CAP31_RS02110	COG2010	Cytochrome c
CAP31_RS02110	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CAP31_RS02125	COG2001	Belongs to the MraZ family
CAP31_RS02130	COG0275	rRNA processing
CAP31_RS02135	COG3116	cell division
CAP31_RS02145	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CAP31_RS02150	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CAP31_RS02155	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CAP31_RS02160	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CAP31_RS02165	COG0772	Belongs to the SEDS family
CAP31_RS02170	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CAP31_RS02175	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CAP31_RS02180	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CAP31_RS02185	COG1181	Belongs to the D-alanine--D-alanine ligase family
CAP31_RS02190	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CAP31_RS02205	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CAP31_RS02220	COG0653	protein targeting
CAP31_RS02245	COG1538	Outer membrane efflux protein
CAP31_RS02250	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CAP31_RS02255	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CAP31_RS02260	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CAP31_RS02265	COG1968	undecaprenyl-diphosphatase activity
CAP31_RS02275	COG0840	transmembrane signaling receptor activity
CAP31_RS02305	COG0352	thiamine-phosphate diphosphorylase activity
CAP31_RS02315	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CAP31_RS02320	COG1333	cytochrome c biogenesis protein
CAP31_RS02330	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CAP31_RS02375	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CAP31_RS02380	COG0277	FAD linked oxidase domain protein
CAP31_RS02410	COG1981	membrane
CAP31_RS02440	COG0762	integral membrane protein
CAP31_RS02455	COG1530	ribonuclease E activity
CAP31_RS02460	COG0424	maF-like protein
CAP31_RS02465	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CAP31_RS02470	COG0799	negative regulation of ribosome biogenesis
CAP31_RS02475	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CAP31_RS02480	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CAP31_RS02490	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CAP31_RS02505	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CAP31_RS02530	COG0779	Required for maturation of 30S ribosomal subunits
CAP31_RS02535	COG0195	Participates in both transcription termination and antitermination
CAP31_RS02535	COG2251	uridine kinase activity
CAP31_RS02540	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CAP31_RS02545	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CAP31_RS02570	COG0582	viral genome integration into host DNA
CAP31_RS02650	COG2801	Transposase and inactivated derivatives
CAP31_RS02685	COG0736	holo-[acyl-carrier-protein] synthase activity
CAP31_RS02690	COG1472	Belongs to the glycosyl hydrolase 3 family
CAP31_RS02695	COG1573	uracil-dna glycosylase
CAP31_RS02700	COG0322	excinuclease ABC activity
CAP31_RS02705	COG0657	acetylesterase activity
CAP31_RS02720	COG3158	transport of potassium into the cell
CAP31_RS02725	COG0242	peptide deformylase activity
CAP31_RS02730	COG1054	Belongs to the UPF0176 family
CAP31_RS02745	COG0505	Belongs to the CarA family
CAP31_RS02750	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CAP31_RS02755	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CAP31_RS02765	COG1534	Rna-binding protein
CAP31_RS02770	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CAP31_RS02780	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CAP31_RS02785	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CAP31_RS02795	COG0581	inorganic phosphate transmembrane transporter activity
CAP31_RS02810	COG0149	triose-phosphate isomerase activity
CAP31_RS02815	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CAP31_RS02825	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CAP31_RS02830	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CAP31_RS02835	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CAP31_RS02840	COG0649	NAD binding
CAP31_RS02855	COG1034	ATP synthesis coupled electron transport
CAP31_RS02860	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CAP31_RS02875	COG0713	ATP synthesis coupled electron transport
CAP31_RS02890	COG1007	ATP synthesis coupled electron transport
CAP31_RS02910	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CAP31_RS02920	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CAP31_RS02925	COG2814	Major facilitator Superfamily
CAP31_RS02930	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CAP31_RS02940	COG0473	3-isopropylmalate dehydrogenase activity
CAP31_RS02950	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CAP31_RS02965	COG0101	tRNA pseudouridine synthase activity
CAP31_RS02970	COG0135	phosphoribosylanthranilate isomerase activity
CAP31_RS02975	COG0133	tryptophan synthase activity
CAP31_RS02980	COG0159	tryptophan synthase activity
CAP31_RS02985	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CAP31_RS02990	COG0285	dihydrofolate synthase activity
CAP31_RS03000	COG1286	toxin biosynthetic process
CAP31_RS03020	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CAP31_RS03040	COG0215	cysteine-tRNA ligase activity
CAP31_RS03045	COG2095	MarC family integral membrane protein
CAP31_RS03050	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CAP31_RS03100	COG1850	ribulose-bisphosphate carboxylase activity
CAP31_RS03130	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CAP31_RS03135	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CAP31_RS03140	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
CAP31_RS03155	COG1192	Involved in chromosome partitioning
CAP31_RS03180	COG0009	L-threonylcarbamoyladenylate synthase
CAP31_RS03215	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CAP31_RS03220	COG1595	DNA-templated transcription, initiation
CAP31_RS03235	COG0784	Response regulator, receiver
CAP31_RS03235	COG0835	chemotaxis
CAP31_RS03245	COG0582	viral genome integration into host DNA
CAP31_RS03270	COG2755	lipolytic protein G-D-S-L family
CAP31_RS03270	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CAP31_RS03280	COG3012	SEC-C Motif Domain Protein
CAP31_RS03285	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CAP31_RS03290	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CAP31_RS03300	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CAP31_RS03310	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CAP31_RS03315	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CAP31_RS03320	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CAP31_RS03325	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CAP31_RS03325	COG0072	phenylalanine-tRNA ligase activity
CAP31_RS03330	COG0776	regulation of translation
CAP31_RS03345	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CAP31_RS03350	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CAP31_RS03365	COG1011	Hydrolase
CAP31_RS03375	COG0436	Aminotransferase
CAP31_RS03390	COG0625	glutathione transferase activity
CAP31_RS03395	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
CAP31_RS03400	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CAP31_RS03410	COG0723	plastoquinol--plastocyanin reductase activity
CAP31_RS03415	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CAP31_RS03420	COG2857	Cytochrome c1
CAP31_RS03425	COG0625	glutathione transferase activity
CAP31_RS03430	COG2969	positive regulation of protein catabolic process
CAP31_RS03450	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CAP31_RS03465	COG1850	ribulose-bisphosphate carboxylase activity
CAP31_RS03475	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CAP31_RS03480	COG1047	Peptidyl-prolyl cis-trans
CAP31_RS03485	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CAP31_RS03490	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CAP31_RS03495	COG0196	riboflavin kinase activity
CAP31_RS03505	COG0268	Binds directly to 16S ribosomal RNA
CAP31_RS03515	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CAP31_RS03520	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CAP31_RS03525	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CAP31_RS03530	COG0137	argininosuccinate synthase activity
CAP31_RS03535	COG3123	guanosine phosphorylase activity
CAP31_RS03550	COG1666	GTP binding
CAP31_RS03555	COG0517	IMP dehydrogenase activity
CAP31_RS03560	COG1162	GTPase activity
CAP31_RS03565	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CAP31_RS03620	COG4964	Belongs to the GSP D family
CAP31_RS03655	COG3023	N-Acetylmuramoyl-L-alanine amidase
CAP31_RS03670	COG5002	protein histidine kinase activity
CAP31_RS03670	COG5001	Diguanylate cyclase
CAP31_RS03735	COG4396	Host-nuclease inhibitor protein Gam
CAP31_RS03815	COG4383	Mu-like prophage protein gp29
CAP31_RS03820	COG2369	cell adhesion
CAP31_RS03860	COG4387	Mu-like prophage protein GP36
CAP31_RS03875	COG4386	tail sheath protein
CAP31_RS03920	COG3299	homolog of phage Mu protein gp47
CAP31_RS03970	COG0505	Belongs to the CarA family
CAP31_RS03975	COG1469	GTP cyclohydrolase I activity
CAP31_RS03980	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CAP31_RS03985	COG0142	geranyltranstransferase activity
CAP31_RS03990	COG1722	exodeoxyribonuclease VII activity
CAP31_RS04005	COG5001	Diguanylate cyclase
CAP31_RS04005	COG5002	protein histidine kinase activity
CAP31_RS04015	COG0667	Aldo Keto reductase
CAP31_RS04020	COG2814	Major facilitator Superfamily
CAP31_RS04030	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CAP31_RS04030	COG1796	DNA polymerase
CAP31_RS04045	COG4575	ribosome binding
CAP31_RS04050	COG1253	flavin adenine dinucleotide binding
CAP31_RS04060	COG1331	Highly conserved protein containing a thioredoxin domain
CAP31_RS04080	COG2982	Protein involved in outer membrane biogenesis
CAP31_RS04095	COG1064	alcohol dehydrogenase
CAP31_RS04105	COG2161	toxin-antitoxin pair type II binding
CAP31_RS04110	COG1943	Transposase
CAP31_RS04145	COG0210	DNA helicase
CAP31_RS04150	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CAP31_RS04160	COG0217	transcriptional regulatory protein
CAP31_RS04175	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CAP31_RS04180	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CAP31_RS04185	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CAP31_RS04190	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CAP31_RS04195	COG1546	Belongs to the CinA family
CAP31_RS04200	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CAP31_RS04205	COG2137	regulation of response to DNA damage stimulus
CAP31_RS04220	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CAP31_RS04230	COG0189	ligase activity
CAP31_RS04250	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CAP31_RS04280	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CAP31_RS04290	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CAP31_RS04295	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
CAP31_RS04300	COG3189	MarR family transcriptional regulator
CAP31_RS04305	COG0659	secondary active sulfate transmembrane transporter activity
CAP31_RS04325	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CAP31_RS04330	COG0574	Belongs to the PEP-utilizing enzyme family
CAP31_RS04330	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CAP31_RS04345	COG0840	transmembrane signaling receptor activity
CAP31_RS04350	COG2183	response to ionizing radiation
CAP31_RS04355	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CAP31_RS04370	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CAP31_RS04380	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CAP31_RS04400	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CAP31_RS04405	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CAP31_RS04410	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CAP31_RS04415	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CAP31_RS04420	COG1610	YqeY-like protein
CAP31_RS04445	COG0175	sulfate reduction
CAP31_RS04455	COG0488	(ABC) transporter
CAP31_RS04465	COG3267	Type II secretory pathway component ExeA
CAP31_RS04465	COG3409	Peptidoglycan-binding domain 1 protein
CAP31_RS04520	COG2165	general secretion pathway protein
CAP31_RS04535	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CAP31_RS04540	COG3706	GGDEF domain
CAP31_RS04545	COG3568	Endonuclease Exonuclease Phosphatase
CAP31_RS04550	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CAP31_RS04555	COG0052	Belongs to the universal ribosomal protein uS2 family
CAP31_RS04560	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CAP31_RS04565	COG0528	UMP kinase activity
CAP31_RS04570	COG0233	cytoplasmic translational termination
CAP31_RS04575	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CAP31_RS04580	COG0575	Belongs to the CDS family
CAP31_RS04585	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CAP31_RS04605	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CAP31_RS04610	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CAP31_RS04615	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CAP31_RS04620	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CAP31_RS04625	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CAP31_RS04635	COG2866	Carboxypeptidase
CAP31_RS04645	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CAP31_RS04650	COG1381	Involved in DNA repair and RecF pathway recombination
CAP31_RS04655	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CAP31_RS04665	COG1742	UPF0060 membrane protein
CAP31_RS04670	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CAP31_RS04675	COG1522	sequence-specific DNA binding
CAP31_RS04685	COG0330	HflC and HflK could
CAP31_RS04705	COG4548	von Willebrand factor, type A
CAP31_RS04715	COG4451	ribulose bisphosphate carboxylase, small
CAP31_RS04720	COG1850	ribulose-bisphosphate carboxylase activity
CAP31_RS04725	COG0583	DNA-binding transcription factor activity
CAP31_RS04735	COG0251	oxidation-reduction process
CAP31_RS04745	COG0475	glutathione-regulated potassium exporter activity
CAP31_RS04755	COG0726	polysaccharide deacetylase
CAP31_RS04775	COG0318	PFAM AMP-dependent synthetase and ligase
CAP31_RS04780	COG1028	Short-chain dehydrogenase reductase Sdr
CAP31_RS04795	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CAP31_RS04810	COG0571	ribonuclease III activity
CAP31_RS04820	COG0681	Belongs to the peptidase S26 family
CAP31_RS04825	COG0481	GTPase activity
CAP31_RS04835	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CAP31_RS04865	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CAP31_RS04870	COG0312	modulator of DNA gyrase
CAP31_RS04890	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CAP31_RS04895	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CAP31_RS04905	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CAP31_RS04940	COG0277	FAD linked oxidase domain protein
CAP31_RS04945	COG0277	FAD linked oxidase domain protein
CAP31_RS04950	COG0247	lactate metabolic process
CAP31_RS04975	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CAP31_RS04985	COG2205	protein histidine kinase activity
CAP31_RS04990	COG2205	protein histidine kinase activity
CAP31_RS04995	COG4191	Histidine kinase
CAP31_RS05015	COG0405	Gamma-glutamyltransferase
CAP31_RS05030	COG2132	Multicopper oxidase
CAP31_RS05050	COG5002	protein histidine kinase activity
CAP31_RS05120	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CAP31_RS05165	COG0640	Transcriptional regulator
CAP31_RS05175	COG3781	membrane
CAP31_RS05180	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CAP31_RS05185	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CAP31_RS05190	COG1674	ftsk spoiiie
CAP31_RS05195	COG0492	ferredoxin-NADP+ reductase activity
CAP31_RS05200	COG2840	Smr protein MutS2
CAP31_RS05205	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CAP31_RS05210	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CAP31_RS05225	COG0446	pyridine nucleotide-disulphide oxidoreductase
CAP31_RS05260	COG0004	ammonium transporteR
CAP31_RS05270	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CAP31_RS05275	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CAP31_RS05285	COG0140	phosphoribosyl-ATP diphosphatase activity
CAP31_RS05290	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CAP31_RS05295	COG0107	imidazoleglycerol-phosphate synthase activity
CAP31_RS05300	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CAP31_RS05305	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CAP31_RS05310	COG0131	Imidazoleglycerol-phosphate dehydratase
CAP31_RS05315	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CAP31_RS05320	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CAP31_RS05330	COG1704	LemA family
CAP31_RS05335	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CAP31_RS05355	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CAP31_RS05360	COG1420	regulation of RNA biosynthetic process
CAP31_RS05365	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CAP31_RS05370	COG0497	DNA recombination
CAP31_RS05385	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CAP31_RS05390	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CAP31_RS05400	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CAP31_RS05415	COG0513	Belongs to the DEAD box helicase family
CAP31_RS05425	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CAP31_RS05430	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CAP31_RS05430	COG1017	nitric oxide dioxygenase activity
CAP31_RS05435	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CAP31_RS05445	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CAP31_RS05450	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CAP31_RS05460	COG1185	polyribonucleotide nucleotidyltransferase activity
CAP31_RS05465	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CAP31_RS05470	COG1570	exodeoxyribonuclease VII activity
CAP31_RS05485	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CAP31_RS05490	COG0604	alcohol dehydrogenase
CAP31_RS05535	COG1752	Esterase of the alpha-beta hydrolase superfamily
CAP31_RS05540	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CAP31_RS05540	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CAP31_RS05550	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CAP31_RS05565	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CAP31_RS05580	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CAP31_RS05585	COG1393	Belongs to the ArsC family
CAP31_RS05590	COG0735	belongs to the Fur family
CAP31_RS05595	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CAP31_RS05600	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CAP31_RS05615	COG0583	DNA-binding transcription factor activity
CAP31_RS05645	COG0582	viral genome integration into host DNA
CAP31_RS05660	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CAP31_RS05665	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CAP31_RS05670	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CAP31_RS05675	COG1862	Preprotein translocase
CAP31_RS05680	COG0343	queuine tRNA-ribosyltransferase activity
CAP31_RS05685	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CAP31_RS05700	COG0515	serine threonine protein kinase
CAP31_RS05700	COG2815	serine threonine protein kinase
CAP31_RS05705	COG0631	protein serine/threonine phosphatase activity
CAP31_RS05710	COG1716	ATPase activity
CAP31_RS05720	COG1902	pentaerythritol trinitrate reductase activity
CAP31_RS05725	COG1741	Belongs to the pirin family
CAP31_RS05730	COG0583	DNA-binding transcription factor activity
CAP31_RS05735	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CAP31_RS05740	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CAP31_RS05750	COG0567	Dehydrogenase, E1 component
CAP31_RS05755	COG0508	dehydrogenase complex catalyzes the overall conversion of
CAP31_RS05760	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CAP31_RS05765	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CAP31_RS05775	COG0330	HflC and HflK could
CAP31_RS05780	COG0330	HflC and HflK could
CAP31_RS05785	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CAP31_RS05790	COG1923	regulation of RNA biosynthetic process
CAP31_RS05800	COG0166	Belongs to the GPI family
CAP31_RS05810	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CAP31_RS05840	COG0737	Belongs to the 5'-nucleotidase family
CAP31_RS05850	COG3258	Cytochrome c
CAP31_RS05855	COG3258	Cytochrome c
CAP31_RS05870	COG0737	Belongs to the 5'-nucleotidase family
CAP31_RS05915	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CAP31_RS05920	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CAP31_RS05925	COG1116	anion transmembrane transporter activity
CAP31_RS05940	COG0864	Transcriptional regulator
CAP31_RS05945	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CAP31_RS05970	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CAP31_RS05980	COG1881	PFAM PEBP family protein
CAP31_RS05995	COG2198	Histidine kinase
CAP31_RS05995	COG0784	Response regulator, receiver
CAP31_RS05995	COG0643	Histidine kinase
CAP31_RS06000	COG2823	Periplasmic or secreted lipoprotein
CAP31_RS06015	COG4575	ribosome binding
CAP31_RS06040	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CAP31_RS06045	COG5001	Diguanylate cyclase
CAP31_RS06085	COG1028	Short-chain dehydrogenase reductase Sdr
CAP31_RS06100	COG0366	Alpha amylase catalytic
CAP31_RS06105	COG0366	Alpha amylase catalytic
CAP31_RS06115	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CAP31_RS06130	COG1640	4-alpha-glucanotransferase
CAP31_RS06160	COG2192	nodulation
CAP31_RS06165	COG0859	PFAM glycosyl transferase family 9
CAP31_RS06170	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CAP31_RS06175	COG0438	transferase activity, transferring glycosyl groups
CAP31_RS06195	COG1295	ribonuclease BN
CAP31_RS06225	COG5592	hemerythrin HHE cation binding domain
CAP31_RS06230	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CAP31_RS06235	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CAP31_RS06240	COG2197	response regulator
CAP31_RS06275	COG0363	glucosamine-6-phosphate deaminase activity
CAP31_RS06285	COG4660	Part of a membrane complex involved in electron transport
CAP31_RS06300	COG4656	Part of a membrane complex involved in electron transport
CAP31_RS06305	COG2878	Part of a membrane complex involved in electron transport
CAP31_RS06310	COG4657	Part of a membrane complex involved in electron transport
CAP31_RS06315	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CAP31_RS06320	COG0167	dihydroorotate dehydrogenase activity
CAP31_RS06330	COG0022	dehydrogenase e1 component
CAP31_RS06330	COG0508	dehydrogenase complex catalyzes the overall conversion of
CAP31_RS06335	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CAP31_RS06340	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CAP31_RS06345	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CAP31_RS06355	COG0438	transferase activity, transferring glycosyl groups
CAP31_RS06385	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CAP31_RS06400	COG1530	ribonuclease E activity
CAP31_RS06410	COG0546	phosphoglycolate phosphatase activity
CAP31_RS06425	COG1595	DNA-templated transcription, initiation
CAP31_RS06445	COG0047	phosphoribosylformylglycinamidine synthase activity
CAP31_RS06445	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CAP31_RS06450	COG0071	Belongs to the small heat shock protein (HSP20) family
CAP31_RS06480	COG1214	PFAM Peptidase M22, glycoprotease
CAP31_RS06485	COG0456	acetyltransferase
CAP31_RS06515	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CAP31_RS06520	COG2867	negative regulation of translational initiation
CAP31_RS06525	COG2914	Belongs to the UPF0125 (RnfH) family
CAP31_RS06540	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CAP31_RS06540	COG0519	Catalyzes the synthesis of GMP from XMP
CAP31_RS06545	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CAP31_RS06550	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CAP31_RS06560	COG0776	regulation of translation
CAP31_RS06570	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CAP31_RS06575	COG0284	orotidine-5'-phosphate decarboxylase activity
CAP31_RS06585	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CAP31_RS06595	COG1234	tRNA 3'-trailer cleavage
CAP31_RS06620	COG0439	Biotin carboxylase
CAP31_RS06670	COG1028	Short-chain dehydrogenase reductase Sdr
CAP31_RS06730	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CAP31_RS06740	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CAP31_RS06745	COG0829	nickel cation binding
CAP31_RS06750	COG0831	urea catabolic process
CAP31_RS06755	COG0832	Belongs to the urease beta subunit family
CAP31_RS06760	COG0804	urea catabolic process
CAP31_RS06765	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
CAP31_RS06770	COG0830	nickel cation binding
CAP31_RS06775	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CAP31_RS06780	COG0347	Belongs to the P(II) protein family
CAP31_RS06785	COG0004	ammonium transporteR
CAP31_RS06800	COG2304	oxidoreductase activity
CAP31_RS06805	COG2304	oxidoreductase activity
CAP31_RS06820	COG0714	Associated with various cellular activities
CAP31_RS06835	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CAP31_RS06880	COG0456	acetyltransferase
CAP31_RS06890	COG0788	formyltetrahydrofolate deformylase activity
CAP31_RS06905	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CAP31_RS06905	COG0446	pyridine nucleotide-disulphide oxidoreductase
CAP31_RS06920	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CAP31_RS06925	COG2218	PFAM glutamate synthase alpha subunit domain protein
CAP31_RS06930	COG0069	glutamate synthase activity
CAP31_RS06940	COG3179	chitinase
CAP31_RS06950	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CAP31_RS06970	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CAP31_RS06980	COG1193	negative regulation of DNA recombination
CAP31_RS06985	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
CAP31_RS06990	COG3647	Membrane
CAP31_RS07010	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CAP31_RS07010	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CAP31_RS07015	COG0463	Glycosyl transferase, family 2
CAP31_RS07020	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CAP31_RS07025	COG2076	Multidrug Resistance protein
CAP31_RS07040	COG0450	alkyl hydroperoxide reductase
CAP31_RS07045	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CAP31_RS07050	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
CAP31_RS07065	COG1070	Carbohydrate kinase
CAP31_RS07075	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CAP31_RS07080	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CAP31_RS07080	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CAP31_RS07085	COG2814	Major facilitator Superfamily
CAP31_RS07110	COG3276	selenocysteine insertion sequence binding
CAP31_RS07135	COG2864	formate dehydrogenase
CAP31_RS07140	COG0437	4 iron, 4 sulfur cluster binding
CAP31_RS07145	COG3383	formate dehydrogenase (NAD+) activity
CAP31_RS07145	COG0243	molybdopterin cofactor binding
CAP31_RS07150	COG3383	formate dehydrogenase (NAD+) activity
CAP31_RS07150	COG0243	molybdopterin cofactor binding
CAP31_RS07160	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CAP31_RS07165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CAP31_RS07180	COG2089	acid synthase
CAP31_RS07185	COG0028	Belongs to the TPP enzyme family
CAP31_RS07200	COG0546	phosphoglycolate phosphatase activity
CAP31_RS07230	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CAP31_RS07245	COG0123	including yeast histone deacetylase and acetoin utilization protein
CAP31_RS07250	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CAP31_RS07250	COG1042	CoA-binding domain protein
CAP31_RS07250	COG0045	succinate-CoA ligase (ADP-forming) activity
CAP31_RS07255	COG2226	methyltransferase
CAP31_RS07260	COG3706	GGDEF domain
CAP31_RS07265	COG3706	GGDEF domain
CAP31_RS07270	COG0842	Transport permease protein
CAP31_RS07275	COG0842	Transport permease protein
CAP31_RS07300	COG0243	molybdopterin cofactor binding
CAP31_RS07320	COG2197	response regulator
CAP31_RS07325	COG3706	GGDEF domain
CAP31_RS07345	COG2257	FlhB HrpN YscU SpaS Family
CAP31_RS07350	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
CAP31_RS07370	COG0438	transferase activity, transferring glycosyl groups
CAP31_RS07375	COG0463	Glycosyl transferase, family 2
CAP31_RS07385	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CAP31_RS07390	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CAP31_RS07395	COG0271	Belongs to the BolA IbaG family
CAP31_RS07400	COG0842	Transport permease protein
CAP31_RS07405	COG1131	(ABC) transporter
CAP31_RS07425	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CAP31_RS07430	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CAP31_RS07435	COG1127	ABC transporter
CAP31_RS07450	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CAP31_RS07455	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CAP31_RS07460	COG0640	Transcriptional regulator
CAP31_RS07475	COG0583	DNA-binding transcription factor activity
CAP31_RS07490	COG1199	ATP-dependent helicase activity
CAP31_RS07505	COG0180	Tryptophanyl-tRNA synthetase
CAP31_RS07510	COG1994	Peptidase M50
CAP31_RS07515	COG0009	L-threonylcarbamoyladenylate synthase
CAP31_RS07520	COG0613	PHP domain protein
CAP31_RS07530	COG2917	probably involved in intracellular septation
CAP31_RS07535	COG2350	Protein conserved in bacteria
CAP31_RS07540	COG0271	Belongs to the BolA IbaG family
CAP31_RS07545	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CAP31_RS07550	COG1923	regulation of RNA biosynthetic process
CAP31_RS07565	COG0347	Belongs to the P(II) protein family
CAP31_RS07575	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CAP31_RS07580	COG0045	succinate-CoA ligase (ADP-forming) activity
CAP31_RS07595	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CAP31_RS07605	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CAP31_RS07610	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CAP31_RS07635	COG0676	glucose-6-phosphate 1-epimerase activity
CAP31_RS07640	COG5265	(ABC) transporter
CAP31_RS07645	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
CAP31_RS07660	COG0431	NADPH-dependent FMN reductase
CAP31_RS07665	COG0543	2 iron, 2 sulfur cluster binding
CAP31_RS07665	COG0493	'glutamate synthase
CAP31_RS07685	COG0436	Aminotransferase
CAP31_RS07690	COG2171	N-acyltransferase activity
CAP31_RS07770	COG2801	Transposase and inactivated derivatives
CAP31_RS07810	COG4680	protein conserved in bacteria
CAP31_RS07830	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CAP31_RS07835	COG4783	chaperone-mediated protein folding
CAP31_RS07865	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CAP31_RS07875	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CAP31_RS07880	COG0560	Phosphoserine phosphatase
CAP31_RS07885	COG2217	Heavy metal translocating P-type atpase
CAP31_RS07900	COG1053	succinate dehydrogenase
CAP31_RS07910	COG2009	succinate dehydrogenase
CAP31_RS07915	COG0281	malic enzyme
CAP31_RS07930	COG3660	Nucleoside-diphosphate-sugar epimerase
CAP31_RS07940	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CAP31_RS07945	COG0443	Heat shock 70 kDa protein
CAP31_RS07950	COG0484	heat shock protein binding
CAP31_RS07965	COG0084	hydrolase, TatD family'
CAP31_RS07980	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CAP31_RS07985	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CAP31_RS07995	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CAP31_RS08000	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CAP31_RS08005	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CAP31_RS08015	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CAP31_RS08020	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CAP31_RS08025	COG0416	fatty acid biosynthetic process
CAP31_RS08030	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CAP31_RS08040	COG0439	Biotin carboxylase
CAP31_RS08045	COG5016	pyruvate
CAP31_RS08045	COG0511	ligase activity, forming carbon-carbon bonds
CAP31_RS08050	COG0424	maF-like protein
CAP31_RS08055	COG0488	(ABC) transporter
CAP31_RS08060	COG0328	RNA-DNA hybrid ribonuclease activity
CAP31_RS08065	COG2226	methyltransferase
CAP31_RS08070	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CAP31_RS08075	COG1388	LysM domain
CAP31_RS08075	COG0741	lytic transglycosylase activity
CAP31_RS08080	COG4172	Belongs to the ABC transporter superfamily
CAP31_RS08085	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CAP31_RS08105	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CAP31_RS08120	COG0776	regulation of translation
CAP31_RS08125	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CAP31_RS08130	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CAP31_RS08135	COG0740	serine-type endopeptidase activity
CAP31_RS08140	COG0544	peptidyl-prolyl cis-trans isomerase activity
CAP31_RS08150	COG1562	ergosterol biosynthetic process
CAP31_RS08155	COG1562	ergosterol biosynthetic process
CAP31_RS08165	COG1028	Short-chain dehydrogenase reductase Sdr
CAP31_RS08205	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CAP31_RS08210	COG1677	Flagellar hook-basal body complex protein FliE
CAP31_RS08230	COG1157	protein secretion by the type III secretion system
CAP31_RS08250	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CAP31_RS08255	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CAP31_RS08260	COG3190	flagellar
CAP31_RS08270	COG1987	bacterial-type flagellum assembly
CAP31_RS08285	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CAP31_RS08290	COG0745	RESPONSE REGULATOR receiver
CAP31_RS08295	COG2201	protein-glutamate methylesterase activity
CAP31_RS08300	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CAP31_RS08310	COG0840	transmembrane signaling receptor activity
CAP31_RS08315	COG0840	transmembrane signaling receptor activity
CAP31_RS08320	COG0840	transmembrane signaling receptor activity
CAP31_RS08325	COG0835	chemotaxis
CAP31_RS08330	COG2198	Histidine kinase
CAP31_RS08330	COG0643	Histidine kinase
CAP31_RS08335	COG0745	RESPONSE REGULATOR receiver
CAP31_RS08345	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CAP31_RS08350	COG1256	bacterial-type flagellum assembly
CAP31_RS08355	COG3951	Flagellar rod assembly protein muramidase FlgJ
CAP31_RS08355	COG1705	Flagellar rod assembly protein muramidase FlgJ
CAP31_RS08360	COG1706	bacterial-type flagellum-dependent cell motility
CAP31_RS08365	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CAP31_RS08375	COG4787	bacterial-type flagellum-dependent cell motility
CAP31_RS08385	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CAP31_RS08390	COG1558	bacterial-type flagellum-dependent cell motility
CAP31_RS08395	COG1815	bacterial-type flagellum-dependent cell motility
CAP31_RS08415	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CAP31_RS08435	COG0564	pseudouridine synthase activity
CAP31_RS08460	COG1428	Deoxynucleoside kinase
CAP31_RS08465	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CAP31_RS08470	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CAP31_RS08475	COG1360	Flagellar Motor Protein
CAP31_RS08485	COG2226	methyltransferase
CAP31_RS08505	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CAP31_RS08515	COG0556	nucleotide-excision repair
CAP31_RS08520	COG0436	Aminotransferase
CAP31_RS08535	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CAP31_RS08540	COG2863	cytochrome
CAP31_RS08545	COG3258	Cytochrome c
CAP31_RS08555	COG0557	exoribonuclease II activity
CAP31_RS08560	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CAP31_RS08565	COG0037	tRNA processing
CAP31_RS08565	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CAP31_RS08660	COG2814	Major facilitator Superfamily
CAP31_RS08690	COG1187	pseudouridine synthase activity
CAP31_RS08695	COG1944	ATP diphosphatase activity
CAP31_RS08710	COG0443	Heat shock 70 kDa protein
CAP31_RS08715	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CAP31_RS08720	COG0316	Belongs to the HesB IscA family
CAP31_RS08725	COG0822	iron-sulfur transferase activity
CAP31_RS08730	COG1104	cysteine desulfurase activity
CAP31_RS08750	COG0483	inositol monophosphate 1-phosphatase activity
CAP31_RS08755	COG0527	aspartate kinase activity
CAP31_RS08810	COG1196	nuclear chromosome segregation
CAP31_RS08830	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CAP31_RS08835	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CAP31_RS08840	COG2204	response regulator
CAP31_RS08855	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CAP31_RS08860	COG1484	DNA-dependent DNA replication
CAP31_RS08865	COG0840	transmembrane signaling receptor activity
CAP31_RS08870	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CAP31_RS08870	COG1648	precorrin-2 dehydrogenase activity
CAP31_RS08875	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CAP31_RS08885	COG0175	sulfate reduction
CAP31_RS08890	COG0175	sulfate reduction
CAP31_RS08895	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CAP31_RS08900	COG0730	response to heat
CAP31_RS08905	COG0583	DNA-binding transcription factor activity
CAP31_RS08910	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CAP31_RS08920	COG4654	Cytochrome c, class I
CAP31_RS08930	COG0243	molybdopterin cofactor binding
CAP31_RS08945	COG4191	Histidine kinase
CAP31_RS08960	COG3220	belongs to the UPF0276 family
CAP31_RS09010	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CAP31_RS09020	COG0573	inorganic phosphate transmembrane transporter activity
CAP31_RS09030	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CAP31_RS09050	COG0517	IMP dehydrogenase activity
CAP31_RS09055	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CAP31_RS09070	COG0704	Plays a role in the regulation of phosphate uptake
CAP31_RS09080	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CAP31_RS09085	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CAP31_RS09090	COG3431	PFAM Phosphate-starvation-inducible E
CAP31_RS09095	COG0315	cyclic pyranopterin monophosphate synthase activity
CAP31_RS09100	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CAP31_RS09105	COG1763	Mo-molybdopterin cofactor biosynthetic process
CAP31_RS09110	COG0303	'Molybdopterin
CAP31_RS09115	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CAP31_RS09120	COG0314	molybdopterin synthase activity
CAP31_RS09125	COG0746	molybdenum cofactor guanylyltransferase activity
CAP31_RS09150	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CAP31_RS09160	COG3039	Transposase
CAP31_RS09195	COG0582	viral genome integration into host DNA
CAP31_RS09230	COG2801	Transposase and inactivated derivatives
CAP31_RS09245	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CAP31_RS09250	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
CAP31_RS09255	COG3454	Phosphonate metabolism
CAP31_RS09260	COG4778	phosphonate C-P lyase system protein PhnL
CAP31_RS09265	COG4107	phosphonate C-P lyase system protein PhnK
CAP31_RS09270	COG3627	carbon phosphorus lyase activity
CAP31_RS09300	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
CAP31_RS09310	COG2188	Transcriptional regulator
CAP31_RS09315	COG2801	Transposase and inactivated derivatives
CAP31_RS09370	COG2204	response regulator
CAP31_RS09380	COG2205	protein histidine kinase activity
CAP31_RS09385	COG0709	Synthesizes selenophosphate from selenide and ATP
CAP31_RS09390	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CAP31_RS09395	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CAP31_RS09420	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CAP31_RS09425	COG1027	Aspartate ammonia-lyase
CAP31_RS09440	COG1295	ribonuclease BN
CAP31_RS09440	COG1959	2 iron, 2 sulfur cluster binding
CAP31_RS09455	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CAP31_RS09465	COG0589	response to stress
CAP31_RS09485	COG0542	response to heat
CAP31_RS09525	COG0123	including yeast histone deacetylase and acetoin utilization protein
CAP31_RS09530	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CAP31_RS09535	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CAP31_RS09540	COG1763	Mo-molybdopterin cofactor biosynthetic process
CAP31_RS09545	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CAP31_RS09555	COG2081	HI0933 family
CAP31_RS09630	COG0586	Pfam SNARE associated Golgi protein
CAP31_RS09635	COG2326	polyphosphate kinase activity
CAP31_RS09640	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CAP31_RS09645	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CAP31_RS09650	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CAP31_RS09660	COG0356	it plays a direct role in the translocation of protons across the membrane
CAP31_RS09680	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CAP31_RS09700	COG2084	Dehydrogenase
CAP31_RS09705	COG1902	pentaerythritol trinitrate reductase activity
CAP31_RS09715	COG1881	PFAM PEBP family protein
CAP31_RS09720	COG1132	(ABC) transporter
CAP31_RS09750	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
CAP31_RS09755	COG3263	regulation of cellular component size
CAP31_RS09765	COG2824	Alkylphosphonate utilization operon protein PhnA
CAP31_RS09790	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CAP31_RS09800	COG0788	formyltetrahydrofolate deformylase activity
CAP31_RS09820	COG0247	lactate metabolic process
CAP31_RS09825	COG1592	Rubrerythrin
CAP31_RS09830	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CAP31_RS09835	COG2943	transferase activity, transferring hexosyl groups
CAP31_RS09840	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CAP31_RS09850	COG0668	transmembrane transport
CAP31_RS09890	COG1136	(ABC) transporter
CAP31_RS09905	COG0791	NLP P60 protein
CAP31_RS09915	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CAP31_RS09925	COG0287	Prephenate dehydrogenase
CAP31_RS09930	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CAP31_RS09935	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CAP31_RS09945	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CAP31_RS09955	COG0753	catalase activity
CAP31_RS09960	COG0688	phosphatidylethanolamine metabolic process
CAP31_RS09970	COG0509	glycine decarboxylation via glycine cleavage system
CAP31_RS09980	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CAP31_RS09990	COG0033	Phosphoglucomutase
CAP31_RS09995	COG1278	Cold shock
CAP31_RS10015	COG0058	SHG alpha-glucan phosphorylase activity
CAP31_RS10020	COG0488	(ABC) transporter
CAP31_RS10025	COG2200	EAL domain
CAP31_RS10040	COG0326	Molecular chaperone. Has ATPase activity
CAP31_RS10050	COG0402	S-adenosylhomocysteine deaminase activity
CAP31_RS10055	COG0586	Pfam SNARE associated Golgi protein
CAP31_RS10095	COG4628	conserved protein (DUF2132)
CAP31_RS10100	COG4807	Protein conserved in bacteria
CAP31_RS10105	COG0514	ATP-dependent DNA helicase (RecQ)
CAP31_RS10110	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CAP31_RS10115	COG0826	peptidase U32
CAP31_RS10120	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CAP31_RS10170	COG0477	Major facilitator Superfamily
CAP31_RS10175	COG0204	Acyl-transferase
CAP31_RS10175	COG0318	PFAM AMP-dependent synthetase and ligase
CAP31_RS10190	COG0513	Belongs to the DEAD box helicase family
CAP31_RS10195	COG1217	gtp-binding protein TYPA
CAP31_RS10200	COG0105	UTP biosynthetic process
CAP31_RS10205	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CAP31_RS10210	COG3063	Type IV pilus biogenesis stability protein PilW
CAP31_RS10220	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CAP31_RS10225	COG0124	histidyl-tRNA synthetase
CAP31_RS10240	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CAP31_RS10245	COG1160	GTP binding
CAP31_RS10260	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CAP31_RS10265	COG3025	triphosphatase activity
CAP31_RS10275	COG0494	nUDIX hydrolase
CAP31_RS10285	COG0058	SHG alpha-glucan phosphorylase activity
CAP31_RS10290	COG0297	glycogen (starch) synthase activity
CAP31_RS10295	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CAP31_RS10310	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CAP31_RS10315	COG0837	glucose binding
CAP31_RS10320	COG0166	Belongs to the GPI family
CAP31_RS10330	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CAP31_RS10350	COG0312	modulator of DNA gyrase
CAP31_RS10355	COG3028	Belongs to the UPF0307 family
CAP31_RS10360	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CAP31_RS10375	COG2801	Transposase and inactivated derivatives
CAP31_RS10390	COG1671	Belongs to the UPF0178 family
CAP31_RS10400	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CAP31_RS10405	COG0602	queuosine metabolic process
CAP31_RS10410	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CAP31_RS10420	COG0823	Involved in the tonB-independent uptake of proteins
CAP31_RS10445	COG2255	four-way junction helicase activity
CAP31_RS10450	COG0632	four-way junction helicase activity
CAP31_RS10455	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CAP31_RS10460	COG0429	hydrolase of the alpha beta-hydrolase fold
CAP31_RS10470	COG0521	Mo-molybdopterin cofactor biosynthetic process
CAP31_RS10480	COG1643	Atp-dependent helicase
CAP31_RS10500	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CAP31_RS10515	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CAP31_RS10530	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CAP31_RS10535	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CAP31_RS10540	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CAP31_RS10545	COG0811	peptide transport
CAP31_RS10550	COG0848	biopolymer transport protein
CAP31_RS10560	COG1663	tetraacyldisaccharide 4'-kinase activity
CAP31_RS10565	COG2835	tetraacyldisaccharide 4'-kinase activity
CAP31_RS10570	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CAP31_RS10575	COG0563	adenylate kinase activity
CAP31_RS10580	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CAP31_RS10595	COG2890	protein-(glutamine-N5) methyltransferase activity
CAP31_RS10605	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CAP31_RS10615	COG0408	coproporphyrinogen oxidase activity
CAP31_RS10620	COG0009	L-threonylcarbamoyladenylate synthase
CAP31_RS10625	COG0151	Belongs to the GarS family
CAP31_RS10630	COG0138	bifunctional purine biosynthesis protein purh
CAP31_RS10635	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CAP31_RS10655	COG0795	lipopolysaccharide-transporting ATPase activity
CAP31_RS10660	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CAP31_RS10675	COG0525	valine-tRNA ligase activity
CAP31_RS10685	COG0737	Belongs to the 5'-nucleotidase family
CAP31_RS10695	COG2010	Cytochrome c
CAP31_RS10705	COG3258	Cytochrome c
CAP31_RS10710	COG2863	cytochrome
CAP31_RS10720	COG0753	catalase activity
CAP31_RS10730	COG0308	aminopeptidase N
CAP31_RS10735	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CAP31_RS10740	COG0303	'Molybdopterin
CAP31_RS10745	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CAP31_RS10750	COG0314	molybdopterin synthase activity
CAP31_RS10770	COG0501	Belongs to the peptidase M48B family
CAP31_RS10775	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CAP31_RS10810	COG1278	Cold shock
CAP31_RS10815	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CAP31_RS10820	COG0542	response to heat
CAP31_RS10880	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CAP31_RS10895	COG3706	GGDEF domain
CAP31_RS10900	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CAP31_RS10905	COG4181	ATPase activity
CAP31_RS10940	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CAP31_RS10945	COG0700	Nucleoside recognition
CAP31_RS10950	COG0248	Ppx GppA phosphatase
CAP31_RS11000	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CAP31_RS11005	COG4942	peptidase
CAP31_RS11010	COG0793	Belongs to the peptidase S41A family
CAP31_RS11015	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CAP31_RS11025	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CAP31_RS11030	COG1183	phosphatidylcholine synthase activity
CAP31_RS11035	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CAP31_RS11045	COG0028	Belongs to the TPP enzyme family
CAP31_RS11050	COG4783	chaperone-mediated protein folding
CAP31_RS11070	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CAP31_RS11085	COG2199	diguanylate cyclase activity
CAP31_RS11085	COG2203	Gaf domain
CAP31_RS11095	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CAP31_RS11100	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CAP31_RS11110	COG3300	MHYT domain
CAP31_RS11110	COG5001	Diguanylate cyclase
CAP31_RS11115	COG2201	protein-glutamate methylesterase activity
CAP31_RS11125	COG0840	transmembrane signaling receptor activity
CAP31_RS11130	COG0840	transmembrane signaling receptor activity
CAP31_RS11135	COG0835	chemotaxis
CAP31_RS11140	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CAP31_RS11165	COG2346	COG2346, Truncated hemoglobins
CAP31_RS11175	COG3790	cyd operon protein YbgE
CAP31_RS11185	COG1294	oxidase, subunit
CAP31_RS11205	COG1730	sister chromatid segregation
CAP31_RS11230	COG4256	Hemin uptake protein
CAP31_RS11260	COG3437	response regulator, receiver
CAP31_RS11265	COG5002	protein histidine kinase activity
CAP31_RS11270	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CAP31_RS11280	COG1100	Small GTP-binding protein
CAP31_RS11290	COG0277	FAD linked oxidase domain protein
CAP31_RS11315	COG3706	GGDEF domain
CAP31_RS11330	COG1132	(ABC) transporter
CAP31_RS11335	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CAP31_RS11335	COG0189	ligase activity
CAP31_RS11340	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CAP31_RS11340	COG0189	ligase activity
CAP31_RS11350	COG3550	peptidyl-serine autophosphorylation
CAP31_RS11355	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CAP31_RS11360	COG0433	COG0433 Predicted ATPase
CAP31_RS11365	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CAP31_RS11370	COG3383	formate dehydrogenase (NAD+) activity
CAP31_RS11375	COG1941	NADH ubiquinone oxidoreductase 20 kDa subunit
CAP31_RS11380	COG3259	Nickel-dependent hydrogenase
CAP31_RS11390	COG0375	protein maturation
CAP31_RS11400	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CAP31_RS11415	COG1846	Transcriptional regulator
CAP31_RS11425	COG0697	spore germination
CAP31_RS11445	COG0717	Belongs to the dCTP deaminase family
CAP31_RS11450	COG0489	protein tyrosine kinase activity
CAP31_RS11460	COG0494	nUDIX hydrolase
CAP31_RS11470	COG0714	Associated with various cellular activities
CAP31_RS11490	COG2304	oxidoreductase activity
CAP31_RS11500	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CAP31_RS11505	COG3002	Belongs to the UPF0753 family
CAP31_RS11535	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CAP31_RS11540	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CAP31_RS11550	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CAP31_RS11550	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CAP31_RS11555	COG0354	folic acid binding
CAP31_RS11565	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CAP31_RS11570	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CAP31_RS11575	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CAP31_RS11575	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CAP31_RS11595	COG0142	geranyltranstransferase activity
CAP31_RS11600	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CAP31_RS11605	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CAP31_RS11610	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CAP31_RS11615	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CAP31_RS11620	COG0741	lytic transglycosylase activity
CAP31_RS11625	COG0442	prolyl-tRNA aminoacylation
CAP31_RS11630	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CAP31_RS11645	COG0495	leucyl-tRNA aminoacylation
CAP31_RS11650	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
CAP31_RS11655	COG1466	dna polymerase III delta subunit
CAP31_RS11660	COG0335	large ribosomal subunit rRNA binding
CAP31_RS11665	COG0336	Belongs to the RNA methyltransferase TrmD family
CAP31_RS11670	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CAP31_RS11675	COG0228	four-way junction DNA binding
CAP31_RS11680	COG0024	Methionine aminopeptidase
CAP31_RS11685	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CAP31_RS11690	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CAP31_RS11695	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CAP31_RS11705	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CAP31_RS11710	COG0148	phosphopyruvate hydratase activity
CAP31_RS11715	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CAP31_RS11720	COG0504	CTP synthase activity
CAP31_RS11735	COG2226	methyltransferase
CAP31_RS11745	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CAP31_RS11750	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CAP31_RS11755	COG0697	spore germination
CAP31_RS11760	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CAP31_RS11780	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CAP31_RS11795	COG0438	transferase activity, transferring glycosyl groups
CAP31_RS11805	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
CAP31_RS11830	COG1132	(ABC) transporter
CAP31_RS11840	COG0463	Glycosyl transferase, family 2
CAP31_RS11845	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CAP31_RS11865	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CAP31_RS11870	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CAP31_RS11880	COG0802	atpase or kinase
CAP31_RS11885	COG0860	N-Acetylmuramoyl-L-alanine amidase
CAP31_RS11890	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CAP31_RS11905	COG0513	Belongs to the DEAD box helicase family
CAP31_RS11925	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CAP31_RS11940	COG0375	protein maturation
CAP31_RS11945	COG0298	carbon dioxide binding
CAP31_RS11975	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CAP31_RS12010	COG0629	single-stranded DNA binding
CAP31_RS12015	COG2814	Major facilitator Superfamily
CAP31_RS12025	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CAP31_RS12030	COG0203	ribosomal protein L17
CAP31_RS12035	COG0202	RNA polymerase activity
CAP31_RS12040	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CAP31_RS12045	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CAP31_RS12050	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CAP31_RS12055	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CAP31_RS12060	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CAP31_RS12065	COG0201	protein transport
CAP31_RS12075	COG1841	ribosomal large subunit assembly
CAP31_RS12080	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CAP31_RS12085	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CAP31_RS12090	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CAP31_RS12095	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CAP31_RS12100	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CAP31_RS12105	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CAP31_RS12110	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CAP31_RS12115	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CAP31_RS12120	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CAP31_RS12125	COG0255	Belongs to the universal ribosomal protein uL29 family
CAP31_RS12130	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CAP31_RS12135	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CAP31_RS12140	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CAP31_RS12145	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CAP31_RS12150	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CAP31_RS12155	COG0089	rRNA binding
CAP31_RS12160	COG0088	Forms part of the polypeptide exit tunnel
CAP31_RS12165	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CAP31_RS12170	COG0051	transcription antitermination factor activity, RNA binding
CAP31_RS12175	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CAP31_RS12180	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CAP31_RS12185	COG0049	tRNA binding
CAP31_RS12190	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CAP31_RS12195	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CAP31_RS12200	COG0085	RNA polymerase activity
CAP31_RS12205	COG0222	ribosome binding
CAP31_RS12210	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CAP31_RS12215	COG0081	regulation of translation
CAP31_RS12220	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CAP31_RS12230	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CAP31_RS12240	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CAP31_RS12260	COG0012	GTP binding
CAP31_RS12265	COG0193	aminoacyl-tRNA hydrolase activity
CAP31_RS12270	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CAP31_RS12275	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CAP31_RS12285	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CAP31_RS12290	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CAP31_RS12310	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CAP31_RS12330	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CAP31_RS12345	COG5000	phosphorelay sensor kinase activity
CAP31_RS12355	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CAP31_RS12355	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CAP31_RS12365	COG2211	Major facilitator Superfamily
CAP31_RS12370	COG0708	Exodeoxyribonuclease III
CAP31_RS12375	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CAP31_RS12385	COG3577	Aspartyl protease
CAP31_RS12390	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CAP31_RS12395	COG0154	amidase activity
CAP31_RS12400	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CAP31_RS12405	COG1077	Cell shape determining protein MreB Mrl
CAP31_RS12410	COG1792	Involved in formation and maintenance of cell shape
CAP31_RS12415	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CAP31_RS12420	COG0768	penicillin binding
CAP31_RS12425	COG0772	Belongs to the SEDS family
CAP31_RS12435	COG1686	Belongs to the peptidase S11 family
CAP31_RS12440	COG2921	Belongs to the UPF0250 family
CAP31_RS12445	COG0321	lipoyl(octanoyl) transferase activity
CAP31_RS12450	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CAP31_RS12475	COG0745	RESPONSE REGULATOR receiver
CAP31_RS12480	COG2801	Transposase and inactivated derivatives
CAP31_RS12490	COG3437	response regulator, receiver
CAP31_RS12490	COG2770	Histidine kinase
CAP31_RS12495	COG0475	glutathione-regulated potassium exporter activity
CAP31_RS12525	COG1136	(ABC) transporter
CAP31_RS12540	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CAP31_RS12550	COG0387	Pfam Sodium calcium exchanger
CAP31_RS12560	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CAP31_RS12560	COG0546	phosphoglycolate phosphatase activity
CAP31_RS12570	COG0840	transmembrane signaling receptor activity
CAP31_RS12600	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CAP31_RS12610	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CAP31_RS12615	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CAP31_RS12615	COG2169	Transcriptional regulator
CAP31_RS12620	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CAP31_RS12625	COG1518	maintenance of DNA repeat elements
CAP31_RS12650	COG1857	crispr-associated protein
CAP31_RS12665	COG1203	CRISPR-associated helicase, Cas3
CAP31_RS12680	COG0513	Belongs to the DEAD box helicase family
CAP31_RS12695	COG1116	anion transmembrane transporter activity
CAP31_RS12700	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CAP31_RS12705	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CAP31_RS12710	COG0318	PFAM AMP-dependent synthetase and ligase
CAP31_RS12740	COG2223	nitrite transmembrane transporter activity
CAP31_RS12760	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CAP31_RS12770	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CAP31_RS12775	COG0243	molybdopterin cofactor binding
CAP31_RS12800	COG4783	chaperone-mediated protein folding
CAP31_RS12820	COG3258	Cytochrome c
CAP31_RS12830	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CAP31_RS12860	COG2022	thiamine diphosphate biosynthetic process
CAP31_RS12865	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CAP31_RS12875	COG0659	secondary active sulfate transmembrane transporter activity
CAP31_RS12890	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CAP31_RS12890	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CAP31_RS12895	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CAP31_RS12900	COG3264	Mechanosensitive ion channel
CAP31_RS12900	COG1196	nuclear chromosome segregation
CAP31_RS12935	COG0730	response to heat
CAP31_RS12945	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CAP31_RS12960	COG0494	nUDIX hydrolase
CAP31_RS12970	COG0704	Plays a role in the regulation of phosphate uptake
CAP31_RS12975	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
CAP31_RS12995	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CAP31_RS13000	COG0459	protein refolding
CAP31_RS13005	COG2239	Acts as a magnesium transporter
CAP31_RS13010	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CAP31_RS13015	COG1132	(ABC) transporter
CAP31_RS13020	COG0037	tRNA processing
CAP31_RS13040	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
CAP31_RS13040	COG0662	Cupin 2, conserved barrel domain protein
CAP31_RS13055	COG3206	protein involved in exopolysaccharide biosynthesis
CAP31_RS13055	COG0489	protein tyrosine kinase activity
CAP31_RS13130	COG1045	serine acetyltransferase
CAP31_RS13145	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CAP31_RS13150	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CAP31_RS13185	COG0848	biopolymer transport protein
CAP31_RS13190	COG0811	peptide transport
CAP31_RS13205	COG0523	cobalamin synthesis protein
CAP31_RS13215	COG2346	COG2346, Truncated hemoglobins
CAP31_RS13220	COG1959	2 iron, 2 sulfur cluster binding
CAP31_RS13245	COG1660	Displays ATPase and GTPase activities
CAP31_RS13250	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CAP31_RS13265	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CAP31_RS13270	COG1137	ATPase activity
CAP31_RS13285	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CAP31_RS13305	COG4191	Histidine kinase
CAP31_RS13355	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CAP31_RS13370	COG2204	response regulator
CAP31_RS13380	COG0400	carboxylic ester hydrolase activity
CAP31_RS13385	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CAP31_RS13390	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CAP31_RS13395	COG0742	ribosomal rna small subunit methyltransferase
CAP31_RS13400	COG0612	Peptidase, M16
CAP31_RS13405	COG0612	Peptidase, M16
CAP31_RS13415	COG2884	Cell division ATP-binding protein ftsE
CAP31_RS13420	COG2177	Part of the ABC transporter FtsEX involved in
CAP31_RS13425	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CAP31_RS13435	COG2217	Heavy metal translocating P-type atpase
CAP31_RS13445	COG0348	domain, Protein
CAP31_RS13450	COG2010	Cytochrome c
CAP31_RS13465	COG3278	Belongs to the heme-copper respiratory oxidase family
CAP31_RS13470	COG1999	signal sequence binding
CAP31_RS13480	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CAP31_RS13485	COG3161	chorismate lyase activity
CAP31_RS13495	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CAP31_RS13505	COG1686	Belongs to the peptidase S11 family
CAP31_RS13515	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CAP31_RS13520	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CAP31_RS13525	COG1758	RNA polymerase activity
CAP31_RS13530	COG0194	GDP metabolic process
CAP31_RS13545	COG1561	YicC-like family, N-terminal region
CAP31_RS13555	COG0631	protein serine/threonine phosphatase activity
CAP31_RS13560	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CAP31_RS13565	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CAP31_RS13570	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CAP31_RS13575	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CAP31_RS13585	COG2801	Transposase and inactivated derivatives
CAP31_RS13605	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CAP31_RS13615	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CAP31_RS13620	COG0316	Belongs to the HesB IscA family
CAP31_RS13625	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CAP31_RS13630	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CAP31_RS13640	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CAP31_RS13645	COG1765	OsmC-like protein
CAP31_RS13655	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
CAP31_RS13660	COG2027	D-alanyl-D-alanine carboxypeptidase
CAP31_RS13670	COG3384	dioxygenase
CAP31_RS13690	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CAP31_RS13690	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CAP31_RS13710	COG1970	mechanosensitive ion channel activity
CAP31_RS13720	COG1136	(ABC) transporter
CAP31_RS13720	COG0577	efflux transmembrane transporter activity
CAP31_RS13725	COG1136	(ABC) transporter
CAP31_RS13730	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CAP31_RS13745	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CAP31_RS13750	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CAP31_RS13755	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CAP31_RS13760	COG0540	Belongs to the ATCase OTCase family
CAP31_RS13765	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CAP31_RS13770	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CAP31_RS13775	COG1678	Uncharacterized ACR, COG1678
CAP31_RS13795	COG0305	Participates in initiation and elongation during chromosome replication
CAP31_RS13800	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CAP31_RS13825	COG0004	ammonium transporteR
CAP31_RS13830	COG0347	Belongs to the P(II) protein family
CAP31_RS13840	COG2960	long-chain fatty acid transporting porin activity
CAP31_RS13845	COG0606	chelatase, subunit chli
CAP31_RS13865	COG0708	Exodeoxyribonuclease III
CAP31_RS13875	COG0339	signal peptide processing
CAP31_RS13880	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CAP31_RS13915	COG1454	alcohol dehydrogenase
CAP31_RS13930	COG2850	peptidyl-arginine hydroxylation
CAP31_RS13940	COG0825	malonyl-CoA metabolic process
CAP31_RS13945	COG0037	tRNA processing
CAP31_RS13950	COG0037	tRNA processing
CAP31_RS13955	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CAP31_RS13965	COG0557	exoribonuclease II activity
CAP31_RS13970	COG3150	esterase
CAP31_RS13985	COG1187	pseudouridine synthase activity
CAP31_RS13995	COG1595	DNA-templated transcription, initiation
CAP31_RS14010	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CAP31_RS14015	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CAP31_RS14030	COG1131	(ABC) transporter
CAP31_RS14050	COG0811	peptide transport
CAP31_RS14065	COG0848	biopolymer transport protein
CAP31_RS14075	COG0493	'glutamate synthase
CAP31_RS14080	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CAP31_RS14085	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CAP31_RS14130	COG1797	cobyrinic acid a,c-diamide synthase activity
CAP31_RS14135	COG0778	Nitroreductase
CAP31_RS14150	COG1492	cobalamin metabolic process
CAP31_RS14185	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CAP31_RS14190	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CAP31_RS14210	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CAP31_RS14250	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CAP31_RS14255	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CAP31_RS14260	COG0509	glycine decarboxylation via glycine cleavage system
CAP31_RS14265	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CAP31_RS14285	COG2801	Transposase and inactivated derivatives
CAP31_RS14305	COG2801	Transposase and inactivated derivatives
CAP31_RS14340	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CAP31_RS14350	COG4232	protein-disulfide reductase activity
CAP31_RS14355	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CAP31_RS14360	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CAP31_RS14365	COG0511	ligase activity, forming carbon-carbon bonds
CAP31_RS14370	COG0439	Biotin carboxylase
CAP31_RS14375	COG2264	protein methyltransferase activity
CAP31_RS14385	COG2801	Transposase and inactivated derivatives
CAP31_RS14390	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CAP31_RS14395	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CAP31_RS14400	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CAP31_RS14405	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CAP31_RS14410	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CAP31_RS14415	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CAP31_RS14425	COG0356	it plays a direct role in the translocation of protons across the membrane
CAP31_RS14435	COG1475	DNA binding
CAP31_RS14445	COG1192	Involved in chromosome partitioning
CAP31_RS14450	COG0357	Ribosomal RNA small subunit methyltransferase G
CAP31_RS14455	COG0445	tRNA wobble uridine modification
CAP31_RS14460	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CAP31_RS14465	COG0706	membrane insertase activity
CAP31_RS14470	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CAP31_RS14475	COG0594	ribonuclease P activity
CAP31_RS14480	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CAP31_RS14500	COG2608	mercury ion transmembrane transporter activity
CAP31_RS14515	COG0789	Transcriptional regulator
CAP31_RS14530	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CAP31_RS14560	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CAP31_RS14580	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CAP31_RS14580	COG0617	tRNA 3'-terminal CCA addition
CAP31_RS14580	COG0517	IMP dehydrogenase activity
CAP31_RS14585	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CAP31_RS14655	COG1674	ftsk spoiiie
CAP31_RS14680	COG1192	Involved in chromosome partitioning