locus-tag class description HUE88_RS00005 PF11638 DnaA N-terminal domain HUE88_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix HUE88_RS00005 PF00308 Bacterial dnaA protein HUE88_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HUE88_RS00010 PF02767 DNA polymerase III beta subunit, central domain HUE88_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HUE88_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus HUE88_RS00015 PF00204 DNA gyrase B HUE88_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00015 PF01751 Toprim domain HUE88_RS00025 PF14489 QueF-like protein HUE88_RS00030 PF01966 HD domain HUE88_RS00030 PF01743 Poly A polymerase head domain HUE88_RS00030 PF12627 Probable RNA and SrmB- binding site of polymerase A HUE88_RS00035 PF03144 Elongation factor Tu domain 2 HUE88_RS00035 PF00679 Elongation factor G C-terminus HUE88_RS00035 PF00009 Elongation factor Tu GTP binding domain HUE88_RS00045 PF01625 Peptide methionine sulfoxide reductase HUE88_RS00050 PF00268 Ribonucleotide reductase, small chain HUE88_RS00080 PF01327 Polypeptide deformylase HUE88_RS00085 PF00795 Carbon-nitrogen hydrolase HUE88_RS00095 PF02253 Phospholipase A1 HUE88_RS00100 PF02511 Thymidylate synthase complementing protein HUE88_RS00115 PF00072 Response regulator receiver domain HUE88_RS00115 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS00120 PF01966 HD domain HUE88_RS00120 PF13286 Phosphohydrolase-associated domain HUE88_RS00125 PF01165 Ribosomal protein S21 HUE88_RS00130 PF16730 DnaG-primase C-terminal, helicase-binding domain HUE88_RS00130 PF01807 CHC2 zinc finger HUE88_RS00130 PF13662 Toprim domain HUE88_RS00130 PF08275 DNA primase catalytic core, N-terminal domain HUE88_RS00140 PF00271 Helicase conserved C-terminal domain HUE88_RS00140 PF00270 DEAD/DEAH box helicase HUE88_RS00165 PF03963 Flagellar hook capping protein - N-terminal region HUE88_RS00170 PF00460 Flagella basal body rod protein HUE88_RS00170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HUE88_RS00170 PF07559 Flagellar basal body protein FlaE HUE88_RS00175 PF07559 Flagellar basal body protein FlaE HUE88_RS00175 PF07196 Flagellin hook IN motif HUE88_RS00175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HUE88_RS00175 PF00460 Flagella basal body rod protein HUE88_RS00180 PF02222 ATP-grasp domain HUE88_RS00185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HUE88_RS00185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HUE88_RS00190 PF09335 SNARE associated Golgi protein HUE88_RS00195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00195 PF08447 PAS fold HUE88_RS00195 PF08448 PAS fold HUE88_RS00200 PF02910 Fumarate reductase flavoprotein C-term HUE88_RS00200 PF00890 FAD binding domain HUE88_RS00205 PF13183 4Fe-4S dicluster domain HUE88_RS00205 PF13085 2Fe-2S iron-sulfur cluster binding domain HUE88_RS00210 PF04461 Protein of unknown function (DUF520) HUE88_RS00220 PF07556 Protein of unknown function (DUF1538) HUE88_RS00245 PF04055 Radical SAM superfamily HUE88_RS00245 PF02310 B12 binding domain HUE88_RS00250 PF12832 MFS_1 like family HUE88_RS00255 PF00924 Mechanosensitive ion channel HUE88_RS00255 PF05552 Conserved TM helix HUE88_RS00275 PF08448 PAS fold HUE88_RS00275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00275 PF08447 PAS fold HUE88_RS00280 PF01814 Hemerythrin HHE cation binding domain HUE88_RS00285 PF00950 ABC 3 transport family HUE88_RS00310 PF02915 Rubrerythrin HUE88_RS00320 PF00011 Hsp20/alpha crystallin family HUE88_RS00325 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HUE88_RS00325 PF02896 PEP-utilising enzyme, TIM barrel domain HUE88_RS00325 PF00391 PEP-utilising enzyme, mobile domain HUE88_RS00330 PF00270 DEAD/DEAH box helicase HUE88_RS00330 PF00271 Helicase conserved C-terminal domain HUE88_RS00330 PF08148 DSHCT (NUC185) domain HUE88_RS00335 PF00072 Response regulator receiver domain HUE88_RS00335 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS00345 PF02277 Phosphoribosyltransferase HUE88_RS00355 PF02654 Cobalamin-5-phosphate synthase HUE88_RS00360 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HUE88_RS00365 PF01590 GAF domain HUE88_RS00365 PF00360 Phytochrome region HUE88_RS00365 PF00563 EAL domain HUE88_RS00365 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS00370 PF07685 CobB/CobQ-like glutamine amidotransferase domain HUE88_RS00370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HUE88_RS00395 PF18381 YcaO cyclodehydratase C-terminal domain HUE88_RS00395 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HUE88_RS00400 PF01032 FecCD transport family HUE88_RS00405 PF00005 ABC transporter HUE88_RS00430 PF01497 Periplasmic binding protein HUE88_RS00435 PF07715 TonB-dependent Receptor Plug Domain HUE88_RS00435 PF00593 TonB dependent receptor HUE88_RS00460 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HUE88_RS00460 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HUE88_RS00460 PF13288 DXP reductoisomerase C-terminal domain HUE88_RS00465 PF00814 Glycoprotease family HUE88_RS00470 PF08534 Redoxin HUE88_RS00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00490 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS00490 PF00072 Response regulator receiver domain HUE88_RS00510 PF02743 Cache domain HUE88_RS00510 PF00672 HAMP domain HUE88_RS00510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS00525 PF07681 DoxX HUE88_RS00535 PF05199 GMC oxidoreductase HUE88_RS00535 PF00732 GMC oxidoreductase HUE88_RS00540 PF13173 AAA domain HUE88_RS00540 PF13635 Domain of unknown function (DUF4143) HUE88_RS00545 PF02646 RmuC family HUE88_RS00555 PF00873 AcrB/AcrD/AcrF family HUE88_RS00575 PF08032 RNA 2'-O ribose methyltransferase substrate binding HUE88_RS00575 PF00588 SpoU rRNA Methylase family HUE88_RS00585 PF09962 Uncharacterized conserved protein (DUF2196) HUE88_RS00590 PF00271 Helicase conserved C-terminal domain HUE88_RS00590 PF00270 DEAD/DEAH box helicase HUE88_RS00590 PF03880 DbpA RNA binding domain HUE88_RS00595 PF01863 Protein of unknown function DUF45 HUE88_RS00600 PF00005 ABC transporter HUE88_RS00600 PF12848 ABC transporter HUE88_RS00600 PF16326 ABC transporter C-terminal domain HUE88_RS00605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS00605 PF13426 PAS domain HUE88_RS00605 PF08447 PAS fold HUE88_RS00610 PF04264 YceI-like domain HUE88_RS00625 PF00440 Bacterial regulatory proteins, tetR family HUE88_RS00630 PF16921 Tex protein YqgF-like domain HUE88_RS00630 PF00575 S1 RNA binding domain HUE88_RS00630 PF09371 Tex-like protein N-terminal domain HUE88_RS00630 PF17674 HHH domain HUE88_RS00635 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS00645 PF00072 Response regulator receiver domain HUE88_RS00645 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00660 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HUE88_RS00680 PF00749 tRNA synthetases class I (E and Q), catalytic domain HUE88_RS00690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HUE88_RS00690 PF01872 RibD C-terminal domain HUE88_RS00705 PF00731 AIR carboxylase HUE88_RS00715 PF00484 Carbonic anhydrase HUE88_RS00720 PF00733 Asparagine synthase HUE88_RS00720 PF13537 Glutamine amidotransferase domain HUE88_RS00730 PF03448 MgtE intracellular N domain HUE88_RS00730 PF00571 CBS domain HUE88_RS00730 PF01769 Divalent cation transporter HUE88_RS00735 PF01595 Cyclin M transmembrane N-terminal domain HUE88_RS00735 PF03471 Transporter associated domain HUE88_RS00735 PF00571 CBS domain HUE88_RS00740 PF17200 Single Cache domain 2 HUE88_RS00740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS00740 PF00672 HAMP domain HUE88_RS00765 PF00375 Sodium:dicarboxylate symporter family HUE88_RS00770 PF01966 HD domain HUE88_RS00775 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS00775 PF00072 Response regulator receiver domain HUE88_RS00780 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00785 PF08448 PAS fold HUE88_RS00785 PF08447 PAS fold HUE88_RS00790 PF08448 PAS fold HUE88_RS00790 PF08447 PAS fold HUE88_RS00790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS00795 PF01627 Hpt domain HUE88_RS00795 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS00795 PF00072 Response regulator receiver domain HUE88_RS00800 PF01613 Flavin reductase like domain HUE88_RS00800 PF00753 Metallo-beta-lactamase superfamily HUE88_RS00815 PF01636 Phosphotransferase enzyme family HUE88_RS00820 PF01008 Initiation factor 2 subunit family HUE88_RS00825 PF12849 PBP superfamily domain HUE88_RS00830 PF00672 HAMP domain HUE88_RS00830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS00835 PF00596 Class II Aldolase and Adducin N-terminal domain HUE88_RS00845 PF01235 Sodium:alanine symporter family HUE88_RS00880 PF00665 Integrase core domain HUE88_RS00885 PF01695 IstB-like ATP binding protein HUE88_RS00900 PF02954 Bacterial regulatory protein, Fis family HUE88_RS00900 PF00072 Response regulator receiver domain HUE88_RS00900 PF00158 Sigma-54 interaction domain HUE88_RS00905 PF13581 Histidine kinase-like ATPase domain HUE88_RS00905 PF07568 Histidine kinase HUE88_RS00905 PF13426 PAS domain HUE88_RS00925 PF00872 Transposase, Mutator family HUE88_RS00940 PF00589 Phage integrase family HUE88_RS00940 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS00945 PF14659 Phage integrase, N-terminal SAM-like domain HUE88_RS00945 PF00589 Phage integrase family HUE88_RS01030 PF01555 DNA methylase HUE88_RS01115 PF01871 AMMECR1 HUE88_RS01115 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HUE88_RS01120 PF01875 Memo-like protein HUE88_RS01135 PF07992 Pyridine nucleotide-disulphide oxidoreductase HUE88_RS01140 PF00005 ABC transporter HUE88_RS01145 PF00528 Binding-protein-dependent transport system inner membrane component HUE88_RS01160 PF00342 Phosphoglucose isomerase HUE88_RS01165 PF05698 Bacterial trigger factor protein (TF) C-terminus HUE88_RS01170 PF00795 Carbon-nitrogen hydrolase HUE88_RS01175 PF00684 DnaJ central domain HUE88_RS01175 PF01556 DnaJ C terminal domain HUE88_RS01175 PF00226 DnaJ domain HUE88_RS01185 PF11798 IMS family HHH motif HUE88_RS01185 PF00817 impB/mucB/samB family HUE88_RS01185 PF11799 impB/mucB/samB family C-terminal domain HUE88_RS01200 PF01261 Xylose isomerase-like TIM barrel HUE88_RS01210 PF00004 ATPase family associated with various cellular activities (AAA) HUE88_RS01210 PF17758 Proteasomal ATPase OB N-terminal domain HUE88_RS01210 PF16450 Proteasomal ATPase OB C-terminal domain HUE88_RS01215 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HUE88_RS01220 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HUE88_RS01225 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HUE88_RS01230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HUE88_RS01240 PF07992 Pyridine nucleotide-disulphide oxidoreductase HUE88_RS01240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HUE88_RS01240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HUE88_RS01245 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HUE88_RS01245 PF00384 Molybdopterin oxidoreductase HUE88_RS01245 PF01568 Molydopterin dinucleotide binding domain HUE88_RS01245 PF12838 4Fe-4S dicluster domain HUE88_RS01245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS01250 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal HUE88_RS01250 PF00384 Molybdopterin oxidoreductase HUE88_RS01250 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HUE88_RS01255 PF00146 NADH dehydrogenase HUE88_RS01260 PF12838 4Fe-4S dicluster domain HUE88_RS01265 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HUE88_RS01270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HUE88_RS01275 PF00361 Proton-conducting membrane transporter HUE88_RS01275 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HUE88_RS01280 PF00361 Proton-conducting membrane transporter HUE88_RS01280 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus HUE88_RS01285 PF00361 Proton-conducting membrane transporter HUE88_RS01320 PF01098 Cell cycle protein HUE88_RS01325 PF03033 Glycosyltransferase family 28 N-terminal domain HUE88_RS01325 PF04101 Glycosyltransferase family 28 C-terminal domain HUE88_RS01330 PF09335 SNARE associated Golgi protein HUE88_RS01345 PF00578 AhpC/TSA family HUE88_RS01355 PF00318 Ribosomal protein S2 HUE88_RS01360 PF00889 Elongation factor TS HUE88_RS01365 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HUE88_RS01370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HUE88_RS01375 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HUE88_RS01375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HUE88_RS01385 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HUE88_RS01385 PF10531 SLBB domain HUE88_RS01385 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HUE88_RS01390 PF00384 Molybdopterin oxidoreductase HUE88_RS01390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HUE88_RS01390 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS01390 PF01568 Molydopterin dinucleotide binding domain HUE88_RS01395 PF00146 NADH dehydrogenase HUE88_RS01400 PF12838 4Fe-4S dicluster domain HUE88_RS01405 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HUE88_RS01410 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HUE88_RS01415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HUE88_RS01415 PF00361 Proton-conducting membrane transporter HUE88_RS01420 PF00361 Proton-conducting membrane transporter HUE88_RS01425 PF00361 Proton-conducting membrane transporter HUE88_RS01440 PF00005 ABC transporter HUE88_RS01445 PF01311 Bacterial export proteins, family 1 HUE88_RS01455 PF00625 Guanylate kinase HUE88_RS01460 PF02416 mttA/Hcf106 family HUE88_RS01465 PF00750 tRNA synthetases class I (R) HUE88_RS01465 PF05746 DALR anticodon binding domain HUE88_RS01465 PF03485 Arginyl tRNA synthetase N terminal domain HUE88_RS01485 PF03553 Na+/H+ antiporter family HUE88_RS01490 PF11490 DNA polymerase III polC-type N-terminus II HUE88_RS01490 PF07733 Bacterial DNA polymerase III alpha NTPase domain HUE88_RS01490 PF14480 DNA polymerase III polC-type N-terminus I HUE88_RS01490 PF14579 Helix-hairpin-helix motif HUE88_RS01490 PF01336 OB-fold nucleic acid binding domain HUE88_RS01490 PF00929 Exonuclease HUE88_RS01490 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HUE88_RS01490 PF02811 PHP domain HUE88_RS01510 PF13378 Enolase C-terminal domain-like HUE88_RS01510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HUE88_RS01515 PF00072 Response regulator receiver domain HUE88_RS01515 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS01520 PF00072 Response regulator receiver domain HUE88_RS01525 PF00672 HAMP domain HUE88_RS01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS01525 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS01525 PF01627 Hpt domain HUE88_RS01525 PF00072 Response regulator receiver domain HUE88_RS01525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HUE88_RS01530 PF17158 Membrane-associated sensor, integral membrane domain HUE88_RS01530 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS01540 PF06965 Na+/H+ antiporter 1 HUE88_RS01545 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS01545 PF00072 Response regulator receiver domain HUE88_RS01555 PF05491 RuvB C-terminal winged helix domain HUE88_RS01555 PF05496 Holliday junction DNA helicase RuvB P-loop domain HUE88_RS01555 PF17864 RuvB AAA lid domain HUE88_RS01560 PF13203 Putative metallopeptidase domain HUE88_RS01560 PF09967 VWA-like domain (DUF2201) HUE88_RS01565 PF05970 PIF1-like helicase HUE88_RS01565 PF02689 Helicase HUE88_RS01575 PF00578 AhpC/TSA family HUE88_RS01575 PF10417 C-terminal domain of 1-Cys peroxiredoxin HUE88_RS01580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HUE88_RS01580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HUE88_RS01580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HUE88_RS01580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HUE88_RS01585 PF02773 S-adenosylmethionine synthetase, C-terminal domain HUE88_RS01585 PF00438 S-adenosylmethionine synthetase, N-terminal domain HUE88_RS01585 PF02772 S-adenosylmethionine synthetase, central domain HUE88_RS01590 PF12838 4Fe-4S dicluster domain HUE88_RS01595 PF00334 Nucleoside diphosphate kinase HUE88_RS01605 PF01783 Ribosomal L32p protein family HUE88_RS01610 PF02504 Fatty acid synthesis protein HUE88_RS01615 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HUE88_RS01615 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HUE88_RS01635 PF00271 Helicase conserved C-terminal domain HUE88_RS01635 PF00270 DEAD/DEAH box helicase HUE88_RS01645 PF00924 Mechanosensitive ion channel HUE88_RS01645 PF05552 Conserved TM helix HUE88_RS01655 PF01066 CDP-alcohol phosphatidyltransferase HUE88_RS01660 PF00672 HAMP domain HUE88_RS01660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS01680 PF07664 Ferrous iron transport protein B C terminus HUE88_RS01680 PF07670 Nucleoside recognition HUE88_RS01680 PF02421 Ferrous iron transport protein B HUE88_RS01685 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS01685 PF00072 Response regulator receiver domain HUE88_RS01695 PF00497 Bacterial extracellular solute-binding proteins, family 3 HUE88_RS01695 PF01464 Transglycosylase SLT domain HUE88_RS01700 PF02743 Cache domain HUE88_RS01700 PF00672 HAMP domain HUE88_RS01700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS01710 PF01467 Cytidylyltransferase-like HUE88_RS01715 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HUE88_RS01715 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HUE88_RS01720 PF00162 Phosphoglycerate kinase HUE88_RS01725 PF00121 Triosephosphate isomerase HUE88_RS01750 PF00528 Binding-protein-dependent transport system inner membrane component HUE88_RS01755 PF13184 NusA-like KH domain HUE88_RS01755 PF08529 NusA N-terminal domain HUE88_RS01765 PF00919 Uncharacterized protein family UPF0004 HUE88_RS01765 PF01938 TRAM domain HUE88_RS01765 PF04055 Radical SAM superfamily HUE88_RS01770 PF04028 Domain of unknown function (DUF374) HUE88_RS01780 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS01780 PF00589 Phage integrase family HUE88_RS01800 PF01171 PP-loop family HUE88_RS01805 PF00919 Uncharacterized protein family UPF0004 HUE88_RS01805 PF18693 TRAM domain HUE88_RS01805 PF04055 Radical SAM superfamily HUE88_RS01815 PF00999 Sodium/hydrogen exchanger family HUE88_RS01815 PF02254 TrkA-N domain HUE88_RS01825 PF02335 Cytochrome c552 HUE88_RS01830 PF03264 NapC/NirT cytochrome c family, N-terminal region HUE88_RS01835 PF00753 Metallo-beta-lactamase superfamily HUE88_RS01840 PF05728 Uncharacterised protein family (UPF0227) HUE88_RS01860 PF01293 Phosphoenolpyruvate carboxykinase HUE88_RS01870 PF12344 Ultra-violet resistance protein B HUE88_RS01870 PF02151 UvrB/uvrC motif HUE88_RS01870 PF17757 UvrB interaction domain HUE88_RS01870 PF04851 Type III restriction enzyme, res subunit HUE88_RS01870 PF00271 Helicase conserved C-terminal domain HUE88_RS01875 PF12102 Domain of unknown function (DUF3578) HUE88_RS01875 PF07728 AAA domain (dynein-related subfamily) HUE88_RS01940 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS01940 PF00589 Phage integrase family HUE88_RS01955 PF00145 C-5 cytosine-specific DNA methylase HUE88_RS01980 PF00271 Helicase conserved C-terminal domain HUE88_RS01980 PF04851 Type III restriction enzyme, res subunit HUE88_RS01980 PF02151 UvrB/uvrC motif HUE88_RS01980 PF12344 Ultra-violet resistance protein B HUE88_RS01980 PF17757 UvrB interaction domain HUE88_RS01990 PF00589 Phage integrase family HUE88_RS01995 PF01695 IstB-like ATP binding protein HUE88_RS02000 PF00665 Integrase core domain HUE88_RS02070 PF01695 IstB-like ATP binding protein HUE88_RS02075 PF02796 Helix-turn-helix domain of resolvase HUE88_RS02075 PF00665 Integrase core domain HUE88_RS02085 PF00271 Helicase conserved C-terminal domain HUE88_RS02085 PF17757 UvrB interaction domain HUE88_RS02085 PF02151 UvrB/uvrC motif HUE88_RS02085 PF04851 Type III restriction enzyme, res subunit HUE88_RS02085 PF12344 Ultra-violet resistance protein B HUE88_RS02100 PF08212 Lipocalin-like domain HUE88_RS02110 PF00875 DNA photolyase HUE88_RS02110 PF03441 FAD binding domain of DNA photolyase HUE88_RS02120 PF00939 Sodium:sulfate symporter transmembrane region HUE88_RS02130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS02130 PF00672 HAMP domain HUE88_RS02140 PF11999 Protein of unknown function (DUF3494) HUE88_RS02155 PF00696 Amino acid kinase family HUE88_RS02180 PF08245 Mur ligase middle domain HUE88_RS02185 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HUE88_RS02185 PF00953 Glycosyl transferase family 4 HUE88_RS02190 PF01676 Metalloenzyme superfamily HUE88_RS02190 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HUE88_RS02200 PF00550 Phosphopantetheine attachment site HUE88_RS02205 PF00109 Beta-ketoacyl synthase, N-terminal domain HUE88_RS02205 PF02801 Beta-ketoacyl synthase, C-terminal domain HUE88_RS02210 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HUE88_RS02215 PF02811 PHP domain HUE88_RS02215 PF14480 DNA polymerase III polC-type N-terminus I HUE88_RS02215 PF11490 DNA polymerase III polC-type N-terminus II HUE88_RS02215 PF07733 Bacterial DNA polymerase III alpha NTPase domain HUE88_RS02215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HUE88_RS02215 PF14579 Helix-hairpin-helix motif HUE88_RS02215 PF00929 Exonuclease HUE88_RS02220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HUE88_RS02225 PF00834 Ribulose-phosphate 3 epimerase family HUE88_RS02240 PF00830 Ribosomal L28 family HUE88_RS02245 PF02254 TrkA-N domain HUE88_RS02245 PF07885 Ion channel HUE88_RS02250 PF01960 ArgJ family HUE88_RS02255 PF00132 Bacterial transferase hexapeptide (six repeats) HUE88_RS02260 PF13089 Polyphosphate kinase N-terminal domain HUE88_RS02260 PF17941 Polyphosphate kinase C-terminal domain 1 HUE88_RS02260 PF13090 Polyphosphate kinase C-terminal domain 2 HUE88_RS02260 PF02503 Polyphosphate kinase middle domain HUE88_RS02270 PF02699 Preprotein translocase subunit HUE88_RS02275 PF02355 Protein export membrane protein HUE88_RS02280 PF07549 SecD/SecF GG Motif HUE88_RS02280 PF02355 Protein export membrane protein HUE88_RS02285 PF12729 Four helix bundle sensory module for signal transduction HUE88_RS02285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS02285 PF00672 HAMP domain HUE88_RS02295 PF00773 RNB domain HUE88_RS02310 PF03449 Transcription elongation factor, N-terminal HUE88_RS02310 PF01272 Transcription elongation factor, GreA/GreB, C-term HUE88_RS02315 PF00586 AIR synthase related protein, N-terminal domain HUE88_RS02315 PF02769 AIR synthase related protein, C-terminal domain HUE88_RS02315 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HUE88_RS02325 PF00133 tRNA synthetases class I (I, L, M and V) HUE88_RS02325 PF13603 Leucyl-tRNA synthetase, Domain 2 HUE88_RS02325 PF09334 tRNA synthetases class I (M) HUE88_RS02335 PF17151 Periplasmic sensor domain HUE88_RS02335 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS02340 PF08245 Mur ligase middle domain HUE88_RS02345 PF01551 Peptidase family M23 HUE88_RS02345 PF04225 Opacity-associated protein A LysM-like domain HUE88_RS02355 PF02559 CarD-like/TRCF domain HUE88_RS02355 PF00270 DEAD/DEAH box helicase HUE88_RS02355 PF00271 Helicase conserved C-terminal domain HUE88_RS02355 PF03461 TRCF domain HUE88_RS02355 PF17757 UvrB interaction domain HUE88_RS02360 PF13277 YmdB-like protein HUE88_RS02370 PF00563 EAL domain HUE88_RS02370 PF08668 HDOD domain HUE88_RS02375 PF14572 Phosphoribosyl synthetase-associated domain HUE88_RS02375 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HUE88_RS02380 PF06421 GTP-binding protein LepA C-terminus HUE88_RS02380 PF00009 Elongation factor Tu GTP binding domain HUE88_RS02380 PF00679 Elongation factor G C-terminus HUE88_RS02400 PF00072 Response regulator receiver domain HUE88_RS02400 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS02405 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS02405 PF02702 Osmosensitive K+ channel His kinase sensor domain HUE88_RS02405 PF13493 Domain of unknown function (DUF4118) HUE88_RS02410 PF12170 DNA polymerase III tau subunit V interacting with alpha HUE88_RS02410 PF12169 DNA polymerase III subunits gamma and tau domain III HUE88_RS02430 PF00072 Response regulator receiver domain HUE88_RS02435 PF01584 CheW-like domain HUE88_RS02435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS02435 PF07194 P2 response regulator binding domain HUE88_RS02435 PF01627 Hpt domain HUE88_RS02435 PF02895 Signal transducing histidine kinase, homodimeric domain HUE88_RS02445 PF01177 Asp/Glu/Hydantoin racemase HUE88_RS02450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HUE88_RS02450 PF07498 Rho termination factor, N-terminal domain HUE88_RS02450 PF07497 Rho termination factor, RNA-binding domain HUE88_RS02455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS02455 PF16591 Helical bimodular sensor domain HUE88_RS02455 PF00672 HAMP domain HUE88_RS02470 PF01975 Survival protein SurE HUE88_RS02475 PF00581 Rhodanese-like domain HUE88_RS02475 PF00899 ThiF family HUE88_RS02495 PF03449 Transcription elongation factor, N-terminal HUE88_RS02495 PF01272 Transcription elongation factor, GreA/GreB, C-term HUE88_RS02500 PF02774 Semialdehyde dehydrogenase, dimerisation domain HUE88_RS02500 PF01118 Semialdehyde dehydrogenase, NAD binding domain HUE88_RS02510 PF00072 Response regulator receiver domain HUE88_RS02510 PF01584 CheW-like domain HUE88_RS02515 PF01584 CheW-like domain HUE88_RS02515 PF00072 Response regulator receiver domain HUE88_RS02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS02515 PF02895 Signal transducing histidine kinase, homodimeric domain HUE88_RS02515 PF01627 Hpt domain HUE88_RS02520 PF01584 CheW-like domain HUE88_RS02525 PF02405 Permease MlaE HUE88_RS02530 PF00005 ABC transporter HUE88_RS02545 PF00557 Metallopeptidase family M24 HUE88_RS02545 PF05195 Aminopeptidase P, N-terminal domain HUE88_RS02565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS02565 PF08447 PAS fold HUE88_RS02585 PF12837 4Fe-4S binding domain HUE88_RS02585 PF12801 4Fe-4S binding domain HUE88_RS02590 PF12838 4Fe-4S dicluster domain HUE88_RS02595 PF00384 Molybdopterin oxidoreductase HUE88_RS02595 PF01568 Molydopterin dinucleotide binding domain HUE88_RS02595 PF10518 TAT (twin-arginine translocation) pathway signal sequence HUE88_RS02595 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS02610 PF00563 EAL domain HUE88_RS02610 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS02610 PF00360 Phytochrome region HUE88_RS02610 PF01590 GAF domain HUE88_RS02630 PF12848 ABC transporter HUE88_RS02630 PF00005 ABC transporter HUE88_RS02635 PF06039 Malate:quinone oxidoreductase (Mqo) HUE88_RS02665 PF07516 SecA Wing and Scaffold domain HUE88_RS02665 PF02810 SEC-C motif HUE88_RS02665 PF01043 SecA preprotein cross-linking domain HUE88_RS02665 PF07517 SecA DEAD-like domain HUE88_RS02680 PF02810 SEC-C motif HUE88_RS02685 PF07085 DRTGG domain HUE88_RS02685 PF01515 Phosphate acetyl/butaryl transferase HUE88_RS02690 PF00871 Acetokinase family HUE88_RS02695 PF00313 'Cold-shock' DNA-binding domain HUE88_RS02715 PF00589 Phage integrase family HUE88_RS02715 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS02755 PF00872 Transposase, Mutator family HUE88_RS02795 PF01695 IstB-like ATP binding protein HUE88_RS02800 PF00665 Integrase core domain HUE88_RS02800 PF02796 Helix-turn-helix domain of resolvase HUE88_RS02825 PF00873 AcrB/AcrD/AcrF family HUE88_RS02840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS02840 PF17202 Single cache domain 3 HUE88_RS02840 PF00672 HAMP domain HUE88_RS02850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HUE88_RS02850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HUE88_RS02855 PF00924 Mechanosensitive ion channel HUE88_RS02885 PF14306 PUA-like domain HUE88_RS02885 PF01747 ATP-sulfurylase HUE88_RS02890 PF00072 Response regulator receiver domain HUE88_RS02890 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS02895 PF02542 YgbB family HUE88_RS02895 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HUE88_RS02900 PF01964 Radical SAM ThiC family HUE88_RS02905 PF01883 Iron-sulfur cluster assembly protein HUE88_RS02905 PF10609 NUBPL iron-transfer P-loop NTPase HUE88_RS02910 PF00072 Response regulator receiver domain HUE88_RS02910 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS02915 PF01380 SIS domain HUE88_RS02920 PF01842 ACT domain HUE88_RS02920 PF01909 Nucleotidyltransferase domain HUE88_RS02920 PF08335 GlnD PII-uridylyltransferase HUE88_RS02920 PF01966 HD domain HUE88_RS02930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HUE88_RS02930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HUE88_RS02935 PF02772 S-adenosylmethionine synthetase, central domain HUE88_RS02935 PF00438 S-adenosylmethionine synthetase, N-terminal domain HUE88_RS02935 PF02773 S-adenosylmethionine synthetase, C-terminal domain HUE88_RS02940 PF03458 UPF0126 domain HUE88_RS02945 PF04055 Radical SAM superfamily HUE88_RS02950 PF00535 Glycosyl transferase family 2 HUE88_RS02955 PF18527 STT3/PglB C-terminal beta-barrel domain HUE88_RS02955 PF02516 Oligosaccharyl transferase STT3 subunit HUE88_RS02960 PF00483 Nucleotidyl transferase HUE88_RS02965 PF01068 ATP dependent DNA ligase domain HUE88_RS02965 PF14743 DNA ligase OB-like domain HUE88_RS02970 PF00342 Phosphoglucose isomerase HUE88_RS02975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HUE88_RS02975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HUE88_RS02975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HUE88_RS02980 PF17191 RecG wedge domain HUE88_RS02980 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HUE88_RS02980 PF00270 DEAD/DEAH box helicase HUE88_RS02985 PF01370 NAD dependent epimerase/dehydratase family HUE88_RS02990 PF02350 UDP-N-acetylglucosamine 2-epimerase HUE88_RS02995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HUE88_RS02995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HUE88_RS02995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HUE88_RS03000 PF08240 Alcohol dehydrogenase GroES-like domain HUE88_RS03000 PF00107 Zinc-binding dehydrogenase HUE88_RS03020 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HUE88_RS03025 PF00132 Bacterial transferase hexapeptide (six repeats) HUE88_RS03030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HUE88_RS03030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HUE88_RS03035 PF16363 GDP-mannose 4,6 dehydratase HUE88_RS03040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HUE88_RS03055 PF00117 Glutamine amidotransferase class-I HUE88_RS03060 PF00977 Histidine biosynthesis protein HUE88_RS03090 PF02719 Polysaccharide biosynthesis protein HUE88_RS03090 PF08485 Polysaccharide biosynthesis protein C-terminal HUE88_RS03095 PF02350 UDP-N-acetylglucosamine 2-epimerase HUE88_RS03110 PF01370 NAD dependent epimerase/dehydratase family HUE88_RS03120 PF05016 ParE toxin of type II toxin-antitoxin system, parDE HUE88_RS03125 PF00953 Glycosyl transferase family 4 HUE88_RS03135 PF01850 PIN domain HUE88_RS03150 PF02719 Polysaccharide biosynthesis protein HUE88_RS03185 PF00872 Transposase, Mutator family HUE88_RS03190 PF03738 Glutathionylspermidine synthase preATP-grasp HUE88_RS03210 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HUE88_RS03210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HUE88_RS03210 PF02142 MGS-like domain HUE88_RS03225 PF07724 AAA domain (Cdc48 subfamily) HUE88_RS03225 PF06689 ClpX C4-type zinc finger HUE88_RS03225 PF10431 C-terminal, D2-small domain, of ClpB protein HUE88_RS03230 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HUE88_RS03230 PF00132 Bacterial transferase hexapeptide (six repeats) HUE88_RS03235 PF07977 FabA-like domain HUE88_RS03240 PF02677 Epoxyqueuosine reductase QueH HUE88_RS03255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HUE88_RS03260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS03265 PF00072 Response regulator receiver domain HUE88_RS03265 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS03280 PF00474 Sodium:solute symporter family HUE88_RS03290 PF00929 Exonuclease HUE88_RS03290 PF07733 Bacterial DNA polymerase III alpha NTPase domain HUE88_RS03290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HUE88_RS03290 PF14579 Helix-hairpin-helix motif HUE88_RS03290 PF02811 PHP domain HUE88_RS03290 PF11490 DNA polymerase III polC-type N-terminus II HUE88_RS03295 PF00501 AMP-binding enzyme HUE88_RS03295 PF13193 AMP-binding enzyme C-terminal domain HUE88_RS03295 PF16177 Acetyl-coenzyme A synthetase N-terminus HUE88_RS03300 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HUE88_RS03320 PF04851 Type III restriction enzyme, res subunit HUE88_RS03320 PF00271 Helicase conserved C-terminal domain HUE88_RS03320 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HUE88_RS03320 PF08463 EcoEI R protein C-terminal HUE88_RS03325 PF01420 Type I restriction modification DNA specificity domain HUE88_RS03350 PF02384 N-6 DNA Methylase HUE88_RS03350 PF12161 HsdM N-terminal domain HUE88_RS03355 PF02086 D12 class N6 adenine-specific DNA methyltransferase HUE88_RS03415 PF00580 UvrD/REP helicase N-terminal domain HUE88_RS03415 PF13361 UvrD-like helicase C-terminal domain HUE88_RS03445 PF00529 HlyD membrane-fusion protein of T1SS HUE88_RS03450 PF00664 ABC transporter transmembrane region HUE88_RS03450 PF03412 Peptidase C39 family HUE88_RS03450 PF00005 ABC transporter HUE88_RS03455 PF01389 OmpA-like transmembrane domain HUE88_RS03455 PF00691 OmpA family HUE88_RS03460 PF05736 OprF membrane domain HUE88_RS03460 PF00691 OmpA family HUE88_RS03465 PF00072 Response regulator receiver domain HUE88_RS03465 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS03470 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS03470 PF00989 PAS fold HUE88_RS03475 PF00488 MutS domain V HUE88_RS03475 PF05190 MutS family domain IV HUE88_RS03475 PF05192 MutS domain III HUE88_RS03475 PF05188 MutS domain II HUE88_RS03475 PF01624 MutS domain I HUE88_RS03480 PF01546 Peptidase family M20/M25/M40 HUE88_RS03480 PF07687 Peptidase dimerisation domain HUE88_RS03495 PF01042 Endoribonuclease L-PSP HUE88_RS03500 PF00440 Bacterial regulatory proteins, tetR family HUE88_RS03515 PF10518 TAT (twin-arginine translocation) pathway signal sequence HUE88_RS03515 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HUE88_RS03515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HUE88_RS03520 PF00374 Nickel-dependent hydrogenase HUE88_RS03525 PF01292 Prokaryotic cytochrome b561 HUE88_RS03530 PF01750 Hydrogenase maturation protease HUE88_RS03540 PF00708 Acylphosphatase HUE88_RS03540 PF17788 HypF Kae1-like domain HUE88_RS03540 PF01300 Telomere recombination HUE88_RS03540 PF07503 HypF finger HUE88_RS03560 PF02492 CobW/HypB/UreG, nucleotide-binding domain HUE88_RS03565 PF01455 HupF/HypC family HUE88_RS03570 PF01924 Hydrogenase formation hypA family HUE88_RS03575 PF02661 Fic/DOC family HUE88_RS03575 PF12728 Helix-turn-helix domain HUE88_RS03585 PF12102 Domain of unknown function (DUF3578) HUE88_RS03585 PF07728 AAA domain (dynein-related subfamily) HUE88_RS03590 PF17761 DUF1016 N-terminal domain HUE88_RS03590 PF06250 YhcG PDDEXK nuclease domain HUE88_RS03595 PF09905 DNA-binding protein VF530 HUE88_RS03600 PF02769 AIR synthase related protein, C-terminal domain HUE88_RS03600 PF00586 AIR synthase related protein, N-terminal domain HUE88_RS03605 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HUE88_RS03610 PF00829 Ribosomal prokaryotic L21 protein HUE88_RS03615 PF01016 Ribosomal L27 protein HUE88_RS03620 PF01018 GTP1/OBG HUE88_RS03620 PF01926 50S ribosome-binding GTPase HUE88_RS03625 PF00696 Amino acid kinase family HUE88_RS03630 PF02911 Formyl transferase, C-terminal domain HUE88_RS03630 PF00551 Formyl transferase HUE88_RS03635 PF02237 Biotin protein ligase C terminal domain HUE88_RS03635 PF03099 Biotin/lipoate A/B protein ligase family HUE88_RS03635 PF08279 HTH domain HUE88_RS03640 PF13614 AAA domain HUE88_RS03645 PF17762 HTH domain found in ParB protein HUE88_RS03645 PF02195 ParB-like nuclease domain HUE88_RS03655 PF00430 ATP synthase B/B' CF(0) HUE88_RS03660 PF00213 ATP synthase delta (OSCP) subunit HUE88_RS03665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HUE88_RS03665 PF00306 ATP synthase alpha/beta chain, C terminal domain HUE88_RS03665 PF02874 ATP synthase alpha/beta family, beta-barrel domain HUE88_RS03670 PF00231 ATP synthase HUE88_RS03675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HUE88_RS03675 PF02874 ATP synthase alpha/beta family, beta-barrel domain HUE88_RS03680 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HUE88_RS03685 PF01618 MotA/TolQ/ExbB proton channel family HUE88_RS03690 PF02472 Biopolymer transport protein ExbD/TolR HUE88_RS03700 PF04052 TolB amino-terminal domain HUE88_RS03705 PF00691 OmpA family HUE88_RS03715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HUE88_RS03720 PF00158 Sigma-54 interaction domain HUE88_RS03720 PF00072 Response regulator receiver domain HUE88_RS03720 PF02954 Bacterial regulatory protein, Fis family HUE88_RS03725 PF00698 Acyl transferase domain HUE88_RS03730 PF02540 NAD synthase HUE88_RS03730 PF00795 Carbon-nitrogen hydrolase HUE88_RS03735 PF01048 Phosphorylase superfamily HUE88_RS03740 PF01171 PP-loop family HUE88_RS03750 PF01709 Transcriptional regulator HUE88_RS03755 PF01205 Uncharacterized protein family UPF0029 HUE88_RS03755 PF09186 Domain of unknown function (DUF1949) HUE88_RS03760 PF00482 Type II secretion system (T2SS), protein F HUE88_RS03765 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HUE88_RS03765 PF00437 Type II/IV secretion system protein HUE88_RS03785 PF00263 Bacterial type II and III secretion system protein HUE88_RS03785 PF03958 Bacterial type II/III secretion system short domain HUE88_RS03815 PF01926 50S ribosome-binding GTPase HUE88_RS03815 PF07650 KH domain HUE88_RS03820 PF07724 AAA domain (Cdc48 subfamily) HUE88_RS03820 PF10431 C-terminal, D2-small domain, of ClpB protein HUE88_RS03825 PF00227 Proteasome subunit HUE88_RS03830 PF03948 Ribosomal protein L9, C-terminal domain HUE88_RS03830 PF01281 Ribosomal protein L9, N-terminal domain HUE88_RS03840 PF00764 Arginosuccinate synthase HUE88_RS03865 PF01554 MatE HUE88_RS03885 PF08334 Type II secretion system (T2SS), protein G HUE88_RS03885 PF07963 Prokaryotic N-terminal methylation motif HUE88_RS03895 PF00482 Type II secretion system (T2SS), protein F HUE88_RS03925 PF03958 Bacterial type II/III secretion system short domain HUE88_RS03925 PF00263 Bacterial type II and III secretion system protein HUE88_RS03930 PF00437 Type II/IV secretion system protein HUE88_RS03945 PF00533 BRCA1 C Terminus (BRCT) domain HUE88_RS03945 PF01653 NAD-dependent DNA ligase adenylation domain HUE88_RS03945 PF12826 Helix-hairpin-helix motif HUE88_RS03945 PF03120 NAD-dependent DNA ligase OB-fold domain HUE88_RS03955 PF01728 FtsJ-like methyltransferase HUE88_RS03955 PF01479 S4 domain HUE88_RS03960 PF06574 FAD synthetase HUE88_RS03960 PF01687 Riboflavin kinase HUE88_RS03965 PF01142 tRNA pseudouridine synthase D (TruD) HUE88_RS03970 PF00119 ATP synthase A chain HUE88_RS03980 PF02637 GatB domain HUE88_RS03980 PF02934 GatB/GatE catalytic domain HUE88_RS03985 PF02254 TrkA-N domain HUE88_RS03985 PF07885 Ion channel HUE88_RS03995 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HUE88_RS03995 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HUE88_RS04000 PF03793 PASTA domain HUE88_RS04000 PF00069 Protein kinase domain HUE88_RS04005 PF00939 Sodium:sulfate symporter transmembrane region HUE88_RS04025 PF12704 MacB-like periplasmic core domain HUE88_RS04025 PF02687 FtsX-like permease family HUE88_RS04030 PF00005 ABC transporter HUE88_RS04035 PF16491 CAAX prenyl protease N-terminal, five membrane helices HUE88_RS04035 PF01435 Peptidase family M48 HUE88_RS04040 PF05175 Methyltransferase small domain HUE88_RS04040 PF17827 PrmC N-terminal domain HUE88_RS04065 PF00005 ABC transporter HUE88_RS04065 PF02687 FtsX-like permease family HUE88_RS04065 PF12704 MacB-like periplasmic core domain HUE88_RS04080 PF00091 Tubulin/FtsZ family, GTPase domain HUE88_RS04080 PF12327 FtsZ family, C-terminal domain HUE88_RS04085 PF02491 SHS2 domain inserted in FTSA HUE88_RS04100 PF00202 Aminotransferase class-III HUE88_RS04110 PF00684 DnaJ central domain HUE88_RS04110 PF00226 DnaJ domain HUE88_RS04110 PF01556 DnaJ C terminal domain HUE88_RS04115 PF06725 3D domain HUE88_RS04115 PF03562 MltA specific insert domain HUE88_RS04120 PF13662 Toprim domain HUE88_RS04120 PF02132 RecR protein HUE88_RS04125 PF04333 MlaA lipoprotein HUE88_RS04140 PF08501 Shikimate dehydrogenase substrate binding domain HUE88_RS04145 PF04715 Anthranilate synthase component I, N terminal region HUE88_RS04145 PF00425 chorismate binding enzyme HUE88_RS04160 PF00464 Serine hydroxymethyltransferase HUE88_RS04165 PF01336 OB-fold nucleic acid binding domain HUE88_RS04165 PF00152 tRNA synthetases class II (D, K and N) HUE88_RS04170 PF01475 Ferric uptake regulator family HUE88_RS04180 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS04185 PF01474 Class-II DAHP synthetase family HUE88_RS04190 PF12848 ABC transporter HUE88_RS04190 PF00005 ABC transporter HUE88_RS04190 PF16326 ABC transporter C-terminal domain HUE88_RS04195 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS04195 PF00989 PAS fold HUE88_RS04195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS04210 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HUE88_RS04210 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HUE88_RS04215 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HUE88_RS04215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HUE88_RS04220 PF10442 FIST C domain HUE88_RS04220 PF00563 EAL domain HUE88_RS04220 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS04220 PF08495 FIST N domain HUE88_RS04250 PF13188 PAS domain HUE88_RS04250 PF13426 PAS domain HUE88_RS04250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS04250 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS04250 PF00989 PAS fold HUE88_RS04255 PF02659 Putative manganese efflux pump HUE88_RS04260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS04260 PF08447 PAS fold HUE88_RS04260 PF08448 PAS fold HUE88_RS04280 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HUE88_RS04280 PF00037 4Fe-4S binding domain HUE88_RS04280 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HUE88_RS04285 PF01568 Molydopterin dinucleotide binding domain HUE88_RS04285 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HUE88_RS04285 PF13237 4Fe-4S dicluster domain HUE88_RS04285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS04285 PF00384 Molybdopterin oxidoreductase HUE88_RS04295 PF00374 Nickel-dependent hydrogenase HUE88_RS04305 PF00690 Cation transporter/ATPase, N-terminus HUE88_RS04305 PF00689 Cation transporting ATPase, C-terminus HUE88_RS04310 PF13244 Domain of unknown function (DUF4040) HUE88_RS04310 PF00361 Proton-conducting membrane transporter HUE88_RS04310 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HUE88_RS04315 PF00146 NADH dehydrogenase HUE88_RS04320 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HUE88_RS04330 PF02690 Na+/Pi-cotransporter HUE88_RS04340 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HUE88_RS04340 PF00374 Nickel-dependent hydrogenase HUE88_RS04340 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HUE88_RS04350 PF00248 Aldo/keto reductase family HUE88_RS04360 PF00183 Hsp90 protein HUE88_RS04380 PF12823 Domain of unknown function (DUF3817) HUE88_RS04385 PF04277 Oxaloacetate decarboxylase, gamma chain HUE88_RS04390 PF00364 Biotin-requiring enzyme HUE88_RS04395 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit HUE88_RS04400 PF01584 CheW-like domain HUE88_RS04400 PF00072 Response regulator receiver domain HUE88_RS04410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS04410 PF01568 Molydopterin dinucleotide binding domain HUE88_RS04410 PF00384 Molybdopterin oxidoreductase HUE88_RS04430 PF00202 Aminotransferase class-III HUE88_RS04445 PF00437 Type II/IV secretion system protein HUE88_RS04450 PF03960 ArsC family HUE88_RS04455 PF02686 Glu-tRNAGln amidotransferase C subunit HUE88_RS04465 PF15437 Plasminogen-binding protein pgbA C-terminal HUE88_RS04470 PF00589 Phage integrase family HUE88_RS04470 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS04500 PF01367 5'-3' exonuclease, C-terminal SAM fold HUE88_RS04500 PF00476 DNA polymerase family A HUE88_RS04500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HUE88_RS04505 PF08447 PAS fold HUE88_RS04505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS04505 PF08448 PAS fold HUE88_RS04510 PF00072 Response regulator receiver domain HUE88_RS04510 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS04515 PF00595 PDZ domain HUE88_RS04520 PF02915 Rubrerythrin HUE88_RS04535 PF13847 Methyltransferase domain HUE88_RS04555 PF00701 Dihydrodipicolinate synthetase family HUE88_RS04570 PF05193 Peptidase M16 inactive domain HUE88_RS04570 PF00675 Insulinase (Peptidase family M16) HUE88_RS04575 PF01180 Dihydroorotate dehydrogenase HUE88_RS04585 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase HUE88_RS04590 PF00106 short chain dehydrogenase HUE88_RS04595 PF01565 FAD binding domain HUE88_RS04595 PF04030 D-arabinono-1,4-lactone oxidase HUE88_RS04605 PF01040 UbiA prenyltransferase family HUE88_RS04620 PF17785 PUA-like domain HUE88_RS04620 PF10672 S-adenosylmethionine-dependent methyltransferase HUE88_RS04635 PF01406 tRNA synthetases class I (C) catalytic domain HUE88_RS04655 PF03023 Lipid II flippase MurJ HUE88_RS04665 PF01330 RuvA N terminal domain HUE88_RS04665 PF07499 RuvA, C-terminal domain HUE88_RS04670 PF07478 D-ala D-ala ligase C-terminus HUE88_RS04670 PF01820 D-ala D-ala ligase N-terminus HUE88_RS04680 PF02875 Mur ligase family, glutamate ligase domain HUE88_RS04680 PF08245 Mur ligase middle domain HUE88_RS04690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component HUE88_RS04700 PF01230 HIT domain HUE88_RS04710 PF03976 Polyphosphate kinase 2 (PPK2) HUE88_RS04715 PF05598 Transposase domain (DUF772) HUE88_RS04715 PF01609 Transposase DDE domain HUE88_RS04725 PF00583 Acetyltransferase (GNAT) family HUE88_RS04735 PF12794 Mechanosensitive ion channel inner membrane domain 1 HUE88_RS04735 PF12795 Mechanosensitive ion channel porin domain HUE88_RS04735 PF00924 Mechanosensitive ion channel HUE88_RS04745 PF00581 Rhodanese-like domain HUE88_RS04755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HUE88_RS04755 PF00289 Biotin carboxylase, N-terminal domain HUE88_RS04755 PF02785 Biotin carboxylase C-terminal domain HUE88_RS04860 PF13333 Integrase core domain HUE88_RS04860 PF00665 Integrase core domain HUE88_RS04860 PF13276 HTH-like domain HUE88_RS04865 PF01527 Transposase HUE88_RS04935 PF00448 SRP54-type protein, GTPase domain HUE88_RS04935 PF02978 Signal peptide binding domain HUE88_RS04935 PF02881 SRP54-type protein, helical bundle domain HUE88_RS04995 PF00589 Phage integrase family HUE88_RS04995 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS05020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HUE88_RS05020 PF00925 GTP cyclohydrolase II HUE88_RS05060 PF16653 Saccharopine dehydrogenase C-terminal domain HUE88_RS05060 PF03435 Saccharopine dehydrogenase NADP binding domain HUE88_RS05070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HUE88_RS05075 PF03707 Bacterial signalling protein N terminal repeat HUE88_RS05075 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS05075 PF00563 EAL domain HUE88_RS05080 PF03848 Tellurite resistance protein TehB HUE88_RS05085 PF07963 Prokaryotic N-terminal methylation motif HUE88_RS05090 PF00482 Type II secretion system (T2SS), protein F HUE88_RS05095 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HUE88_RS05095 PF00437 Type II/IV secretion system protein HUE88_RS05110 PF00263 Bacterial type II and III secretion system protein HUE88_RS05110 PF03958 Bacterial type II/III secretion system short domain HUE88_RS05135 PF00994 Probable molybdopterin binding domain HUE88_RS05145 PF13183 4Fe-4S dicluster domain HUE88_RS05145 PF13085 2Fe-2S iron-sulfur cluster binding domain HUE88_RS05150 PF02910 Fumarate reductase flavoprotein C-term HUE88_RS05150 PF00890 FAD binding domain HUE88_RS05155 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HUE88_RS05160 PF03372 Endonuclease/Exonuclease/phosphatase family HUE88_RS05165 PF02754 Cysteine-rich domain HUE88_RS05170 PF13085 2Fe-2S iron-sulfur cluster binding domain HUE88_RS05170 PF13237 4Fe-4S dicluster domain HUE88_RS05175 PF02910 Fumarate reductase flavoprotein C-term HUE88_RS05175 PF00890 FAD binding domain HUE88_RS05195 PF01142 tRNA pseudouridine synthase D (TruD) HUE88_RS05200 PF02666 Phosphatidylserine decarboxylase HUE88_RS05210 PF01926 50S ribosome-binding GTPase HUE88_RS05210 PF06071 Protein of unknown function (DUF933) HUE88_RS05230 PF02789 Cytosol aminopeptidase family, N-terminal domain HUE88_RS05230 PF00883 Cytosol aminopeptidase family, catalytic domain HUE88_RS05240 PF00291 Pyridoxal-phosphate dependent enzyme HUE88_RS05245 PF00156 Phosphoribosyl transferase domain HUE88_RS05255 PF02502 Ribose/Galactose Isomerase HUE88_RS05260 PF02163 Peptidase family M50 HUE88_RS05265 PF10502 Signal peptidase, peptidase S26 HUE88_RS05270 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HUE88_RS05270 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HUE88_RS05290 PF00202 Aminotransferase class-III HUE88_RS05310 PF04545 Sigma-70, region 4 HUE88_RS05310 PF04539 Sigma-70 region 3 HUE88_RS05310 PF04542 Sigma-70 region 2 HUE88_RS05310 PF00140 Sigma-70 factor, region 1.2 HUE88_RS05315 PF00460 Flagella basal body rod protein HUE88_RS05315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HUE88_RS05320 PF00460 Flagella basal body rod protein HUE88_RS05320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HUE88_RS05325 PF08534 Redoxin HUE88_RS05335 PF01493 GXGXG motif HUE88_RS05335 PF01645 Conserved region in glutamate synthase HUE88_RS05335 PF04898 Glutamate synthase central domain HUE88_RS05335 PF00310 Glutamine amidotransferases class-II HUE88_RS05340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HUE88_RS05340 PF07992 Pyridine nucleotide-disulphide oxidoreductase HUE88_RS05340 PF13247 4Fe-4S dicluster domain HUE88_RS05345 PF17848 Acetyl-coA carboxylase zinc finger domain HUE88_RS05345 PF01039 Carboxyl transferase domain HUE88_RS05350 PF02581 Thiamine monophosphate synthase HUE88_RS05355 PF02590 Predicted SPOUT methyltransferase HUE88_RS05370 PF01207 Dihydrouridine synthase (Dus) HUE88_RS05385 PF04509 CheC-like family HUE88_RS05385 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HUE88_RS05395 PF01925 Sulfite exporter TauE/SafE HUE88_RS05400 PF17760 UvrA interaction domain HUE88_RS05400 PF17755 UvrA DNA-binding domain HUE88_RS05410 PF08447 PAS fold HUE88_RS05410 PF13426 PAS domain HUE88_RS05410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS05420 PF02833 DHHA2 domain HUE88_RS05420 PF01368 DHH family HUE88_RS05435 PF00501 AMP-binding enzyme HUE88_RS05435 PF13193 AMP-binding enzyme C-terminal domain HUE88_RS05440 PF04055 Radical SAM superfamily HUE88_RS05440 PF08497 Radical SAM N-terminal HUE88_RS05445 PF00563 EAL domain HUE88_RS05445 PF10442 FIST C domain HUE88_RS05445 PF08495 FIST N domain HUE88_RS05445 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS05450 PF01479 S4 domain HUE88_RS05455 PF00591 Glycosyl transferase family, a/b domain HUE88_RS05455 PF02885 Glycosyl transferase family, helical bundle domain HUE88_RS05460 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HUE88_RS05465 PF12399 Branched-chain amino acid ATP-binding cassette transporter HUE88_RS05465 PF00005 ABC transporter HUE88_RS05470 PF04963 Sigma-54 factor, core binding domain HUE88_RS05470 PF04552 Sigma-54, DNA binding domain HUE88_RS05470 PF00309 Sigma-54 factor, Activator interacting domain (AID) HUE88_RS05480 PF00148 Nitrogenase component 1 type Oxidoreductase HUE88_RS05485 PF02579 Dinitrogenase iron-molybdenum cofactor HUE88_RS05490 PF03270 Protein of unknown function, DUF269 HUE88_RS05495 PF00258 Flavodoxin HUE88_RS05500 PF00543 Nitrogen regulatory protein P-II HUE88_RS05505 PF03206 Nitrogen fixation protein NifW HUE88_RS05510 PF04319 NifZ domain HUE88_RS05515 PF00111 2Fe-2S iron-sulfur cluster binding domain HUE88_RS05520 PF00111 2Fe-2S iron-sulfur cluster binding domain HUE88_RS05525 PF04552 Sigma-54, DNA binding domain HUE88_RS05525 PF00309 Sigma-54 factor, Activator interacting domain (AID) HUE88_RS05525 PF04963 Sigma-54 factor, core binding domain HUE88_RS05570 PF00148 Nitrogenase component 1 type Oxidoreductase HUE88_RS05585 PF02579 Dinitrogenase iron-molybdenum cofactor HUE88_RS05590 PF00258 Flavodoxin HUE88_RS05590 PF00753 Metallo-beta-lactamase superfamily HUE88_RS05600 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family HUE88_RS05610 PF00148 Nitrogenase component 1 type Oxidoreductase HUE88_RS05615 PF11844 Domain of unknown function (DUF3364) HUE88_RS05615 PF00148 Nitrogenase component 1 type Oxidoreductase HUE88_RS05650 PF00248 Aldo/keto reductase family HUE88_RS05655 PF02910 Fumarate reductase flavoprotein C-term HUE88_RS05655 PF00890 FAD binding domain HUE88_RS05660 PF06988 NifT/FixU protein HUE88_RS05665 PF00158 Sigma-54 interaction domain HUE88_RS05665 PF02954 Bacterial regulatory protein, Fis family HUE88_RS05665 PF01590 GAF domain HUE88_RS05680 PF10431 C-terminal, D2-small domain, of ClpB protein HUE88_RS05680 PF07724 AAA domain (Cdc48 subfamily) HUE88_RS05680 PF06689 ClpX C4-type zinc finger HUE88_RS05725 PF00361 Proton-conducting membrane transporter HUE88_RS05730 PF00361 Proton-conducting membrane transporter HUE88_RS05735 PF00361 Proton-conducting membrane transporter HUE88_RS05750 PF03334 Na+/H+ antiporter subunit HUE88_RS05760 PF00582 Universal stress protein family HUE88_RS05775 PF00690 Cation transporter/ATPase, N-terminus HUE88_RS05775 PF00689 Cation transporting ATPase, C-terminus HUE88_RS05810 PF00682 HMGL-like HUE88_RS05815 PF02579 Dinitrogenase iron-molybdenum cofactor HUE88_RS05815 PF04055 Radical SAM superfamily HUE88_RS05825 PF00037 4Fe-4S binding domain HUE88_RS05895 PF05661 Protein of unknown function (DUF808) HUE88_RS05965 PF00459 Inositol monophosphatase family HUE88_RS05970 PF00149 Calcineurin-like phosphoesterase HUE88_RS06025 PF01434 Peptidase family M41 HUE88_RS06025 PF00004 ATPase family associated with various cellular activities (AAA) HUE88_RS06025 PF17862 AAA+ lid domain HUE88_RS06040 PF12796 Ankyrin repeats (3 copies) HUE88_RS06060 PF17158 Membrane-associated sensor, integral membrane domain HUE88_RS06060 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS06110 PF01527 Transposase HUE88_RS06115 PF13333 Integrase core domain HUE88_RS06115 PF13276 HTH-like domain HUE88_RS06115 PF00665 Integrase core domain HUE88_RS06135 PF00589 Phage integrase family HUE88_RS06135 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS06145 PF13291 ACT domain HUE88_RS06145 PF00291 Pyridoxal-phosphate dependent enzyme HUE88_RS06155 PF00205 Thiamine pyrophosphate enzyme, central domain HUE88_RS06155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HUE88_RS06155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HUE88_RS06160 PF10369 Small subunit of acetolactate synthase HUE88_RS06165 PF00132 Bacterial transferase hexapeptide (six repeats) HUE88_RS06165 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HUE88_RS06175 PF00155 Aminotransferase class I and II HUE88_RS06180 PF00132 Bacterial transferase hexapeptide (six repeats) HUE88_RS06180 PF06426 Serine acetyltransferase, N-terminal HUE88_RS06185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HUE88_RS06185 PF17944 Arginine decarboxylase C-terminal helical extension HUE88_RS06185 PF17810 Arginine decarboxylase helical bundle domain HUE88_RS06190 PF01645 Conserved region in glutamate synthase HUE88_RS06195 PF13393 Histidyl-tRNA synthetase HUE88_RS06195 PF03129 Anticodon binding domain HUE88_RS06205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS06205 PF08447 PAS fold HUE88_RS06205 PF13426 PAS domain HUE88_RS06210 PF02223 Thymidylate kinase HUE88_RS06215 PF01467 Cytidylyltransferase-like HUE88_RS06220 PF02441 Flavoprotein HUE88_RS06235 PF00700 Bacterial flagellin C-terminal helical region HUE88_RS06235 PF00669 Bacterial flagellin N-terminal helical region HUE88_RS06240 PF17854 FtsK alpha domain HUE88_RS06240 PF09397 Ftsk gamma domain HUE88_RS06240 PF01580 FtsK/SpoIIIE family HUE88_RS06250 PF00330 Aconitase family (aconitate hydratase) HUE88_RS06250 PF06434 Aconitate hydratase 2 N-terminus HUE88_RS06250 PF11791 Aconitate B N-terminal domain HUE88_RS06255 PF03548 Outer membrane lipoprotein carrier protein LolA HUE88_RS06260 PF07516 SecA Wing and Scaffold domain HUE88_RS06260 PF01043 SecA preprotein cross-linking domain HUE88_RS06260 PF07517 SecA DEAD-like domain HUE88_RS06260 PF02810 SEC-C motif HUE88_RS06260 PF00271 Helicase conserved C-terminal domain HUE88_RS06265 PF12704 MacB-like periplasmic core domain HUE88_RS06265 PF02687 FtsX-like permease family HUE88_RS06275 PF02618 YceG-like family HUE88_RS06280 PF03971 Monomeric isocitrate dehydrogenase HUE88_RS06285 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HUE88_RS06285 PF00056 lactate/malate dehydrogenase, NAD binding domain HUE88_RS06290 PF00206 Lyase HUE88_RS06290 PF10415 Fumarase C C-terminus HUE88_RS06295 PF08442 ATP-grasp domain HUE88_RS06295 PF00549 CoA-ligase HUE88_RS06300 PF00549 CoA-ligase HUE88_RS06300 PF02629 CoA binding domain HUE88_RS06310 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HUE88_RS06310 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HUE88_RS06310 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HUE88_RS06315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HUE88_RS06325 PF00440 Bacterial regulatory proteins, tetR family HUE88_RS06350 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS06350 PF00072 Response regulator receiver domain HUE88_RS06360 PF00749 tRNA synthetases class I (E and Q), catalytic domain HUE88_RS06370 PF01464 Transglycosylase SLT domain HUE88_RS06370 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HUE88_RS06385 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HUE88_RS06395 PF09334 tRNA synthetases class I (M) HUE88_RS06395 PF00133 tRNA synthetases class I (I, L, M and V) HUE88_RS06395 PF01588 Putative tRNA binding domain HUE88_RS06410 PF03480 Bacterial extracellular solute-binding protein, family 7 HUE88_RS06425 PF06508 Queuosine biosynthesis protein QueC HUE88_RS06435 PF02130 Uncharacterized protein family UPF0054 HUE88_RS06440 PF01699 Sodium/calcium exchanger protein HUE88_RS06445 PF00905 Penicillin binding protein transpeptidase domain HUE88_RS06445 PF03717 Penicillin-binding Protein dimerisation domain HUE88_RS06455 PF01926 50S ribosome-binding GTPase HUE88_RS06475 PF00475 Imidazoleglycerol-phosphate dehydratase HUE88_RS06480 PF05036 Sporulation related domain HUE88_RS06480 PF03330 Lytic transglycolase HUE88_RS06490 PF01026 TatD related DNase HUE88_RS06495 PF13476 AAA domain HUE88_RS06535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HUE88_RS06535 PF07992 Pyridine nucleotide-disulphide oxidoreductase HUE88_RS06535 PF13247 4Fe-4S dicluster domain HUE88_RS06540 PF00210 Ferritin-like domain HUE88_RS06550 PF07298 NnrU protein HUE88_RS06555 PF01513 ATP-NAD kinase HUE88_RS06560 PF01590 GAF domain HUE88_RS06560 PF00360 Phytochrome region HUE88_RS06560 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS06560 PF00563 EAL domain HUE88_RS06565 PF01336 OB-fold nucleic acid binding domain HUE88_RS06565 PF02938 GAD domain HUE88_RS06565 PF00152 tRNA synthetases class II (D, K and N) HUE88_RS06575 PF05191 Adenylate kinase, active site lid HUE88_RS06585 PF00270 DEAD/DEAH box helicase HUE88_RS06585 PF00271 Helicase conserved C-terminal domain HUE88_RS06600 PF17131 Outer membrane lipoprotein-sorting protein HUE88_RS06630 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle HUE88_RS06630 PF14602 Hexapeptide repeat of succinyl-transferase HUE88_RS06655 PF00588 SpoU rRNA Methylase family HUE88_RS06660 PF01842 ACT domain HUE88_RS06660 PF00551 Formyl transferase HUE88_RS06675 PF00180 Isocitrate/isopropylmalate dehydrogenase HUE88_RS06680 PF00694 Aconitase C-terminal domain HUE88_RS06685 PF00004 ATPase family associated with various cellular activities (AAA) HUE88_RS06685 PF06480 FtsH Extracellular HUE88_RS06685 PF01434 Peptidase family M41 HUE88_RS06685 PF17862 AAA+ lid domain HUE88_RS06690 PF04055 Radical SAM superfamily HUE88_RS06690 PF00919 Uncharacterized protein family UPF0004 HUE88_RS06700 PF01761 3-dehydroquinate synthase HUE88_RS06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS06710 PF00072 Response regulator receiver domain HUE88_RS06715 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS06715 PF01627 Hpt domain HUE88_RS06715 PF00072 Response regulator receiver domain HUE88_RS06715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HUE88_RS06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS06715 PF00672 HAMP domain HUE88_RS06720 PF01339 CheB methylesterase HUE88_RS06720 PF00072 Response regulator receiver domain HUE88_RS06725 PF03975 CheD chemotactic sensory transduction HUE88_RS06730 PF00672 HAMP domain HUE88_RS06730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HUE88_RS06730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS06730 PF01627 Hpt domain HUE88_RS06730 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS06730 PF00072 Response regulator receiver domain HUE88_RS06735 PF03705 CheR methyltransferase, all-alpha domain HUE88_RS06735 PF01739 CheR methyltransferase, SAM binding domain HUE88_RS06740 PF01627 Hpt domain HUE88_RS06740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS06740 PF07194 P2 response regulator binding domain HUE88_RS06740 PF02895 Signal transducing histidine kinase, homodimeric domain HUE88_RS06740 PF01584 CheW-like domain HUE88_RS06750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS06750 PF02203 Tar ligand binding domain homologue HUE88_RS06750 PF00672 HAMP domain HUE88_RS06755 PF01584 CheW-like domain HUE88_RS06760 PF00072 Response regulator receiver domain HUE88_RS06770 PF05958 tRNA (Uracil-5-)-methyltransferase HUE88_RS06775 PF00813 FliP family HUE88_RS06780 PF13677 Membrane MotB of proton-channel complex MotA/MotB HUE88_RS06780 PF00691 OmpA family HUE88_RS06785 PF01618 MotA/TolQ/ExbB proton channel family HUE88_RS06790 PF12804 MobA-like NTP transferase domain HUE88_RS06790 PF00132 Bacterial transferase hexapeptide (six repeats) HUE88_RS06800 PF13476 AAA domain HUE88_RS06805 PF00708 Acylphosphatase HUE88_RS06815 PF10415 Fumarase C C-terminus HUE88_RS06815 PF00206 Lyase HUE88_RS06820 PF07992 Pyridine nucleotide-disulphide oxidoreductase HUE88_RS06840 PF01966 HD domain HUE88_RS06845 PF03372 Endonuclease/Exonuclease/phosphatase family HUE88_RS06850 PF13396 Phospholipase_D-nuclease N-terminal HUE88_RS06850 PF13091 PLD-like domain HUE88_RS06865 PF00999 Sodium/hydrogen exchanger family HUE88_RS06870 PF04127 DNA / pantothenate metabolism flavoprotein HUE88_RS06870 PF02441 Flavoprotein HUE88_RS06880 PF01255 Putative undecaprenyl diphosphate synthase HUE88_RS06885 PF06750 Bacterial Peptidase A24 N-terminal domain HUE88_RS06885 PF01478 Type IV leader peptidase family HUE88_RS06895 PF01416 tRNA pseudouridine synthase HUE88_RS06900 PF02698 DUF218 domain HUE88_RS06905 PF00561 alpha/beta hydrolase fold HUE88_RS06915 PF08447 PAS fold HUE88_RS06915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS06915 PF08448 PAS fold HUE88_RS06935 PF01820 D-ala D-ala ligase N-terminus HUE88_RS06935 PF07478 D-ala D-ala ligase C-terminus HUE88_RS06945 PF02092 Glycyl-tRNA synthetase beta subunit HUE88_RS06955 PF00593 TonB dependent receptor HUE88_RS06955 PF07715 TonB-dependent Receptor Plug Domain HUE88_RS06965 PF08495 FIST N domain HUE88_RS06965 PF00563 EAL domain HUE88_RS06965 PF10442 FIST C domain HUE88_RS06965 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS06970 PF01066 CDP-alcohol phosphatidyltransferase HUE88_RS06975 PF17820 PDZ domain HUE88_RS06975 PF02163 Peptidase family M50 HUE88_RS06980 PF01168 Alanine racemase, N-terminal domain HUE88_RS06985 PF00194 Eukaryotic-type carbonic anhydrase HUE88_RS07010 PF02581 Thiamine monophosphate synthase HUE88_RS07035 PF00563 EAL domain HUE88_RS07050 PF03061 Thioesterase superfamily HUE88_RS07070 PF12167 Arm DNA-binding domain HUE88_RS07070 PF00589 Phage integrase family HUE88_RS07140 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS07140 PF00589 Phage integrase family HUE88_RS07170 PF17158 Membrane-associated sensor, integral membrane domain HUE88_RS07170 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS07185 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS07185 PF08448 PAS fold HUE88_RS07195 PF00589 Phage integrase family HUE88_RS07195 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS07210 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS07210 PF00589 Phage integrase family HUE88_RS07320 PF01527 Transposase HUE88_RS07325 PF13276 HTH-like domain HUE88_RS07325 PF00665 Integrase core domain HUE88_RS07325 PF13333 Integrase core domain HUE88_RS07330 PF00072 Response regulator receiver domain HUE88_RS07330 PF00158 Sigma-54 interaction domain HUE88_RS07330 PF02954 Bacterial regulatory protein, Fis family HUE88_RS07335 PF13426 PAS domain HUE88_RS07335 PF13581 Histidine kinase-like ATPase domain HUE88_RS07335 PF07568 Histidine kinase HUE88_RS07355 PF00872 Transposase, Mutator family HUE88_RS07365 PF00665 Integrase core domain HUE88_RS07370 PF01695 IstB-like ATP binding protein HUE88_RS07385 PF11849 Domain of unknown function (DUF3369) HUE88_RS07395 PF09308 LuxQ, periplasmic HUE88_RS07395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS07395 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS07395 PF00072 Response regulator receiver domain HUE88_RS07400 PF01527 Transposase HUE88_RS07405 PF13333 Integrase core domain HUE88_RS07405 PF00665 Integrase core domain HUE88_RS07405 PF13276 HTH-like domain HUE88_RS07430 PF11849 Domain of unknown function (DUF3369) HUE88_RS07435 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS07435 PF05230 MASE2 domain HUE88_RS07440 PF01381 Helix-turn-helix HUE88_RS07450 PF02796 Helix-turn-helix domain of resolvase HUE88_RS07450 PF00239 Resolvase, N terminal domain HUE88_RS07455 PF01568 Molydopterin dinucleotide binding domain HUE88_RS07455 PF00384 Molybdopterin oxidoreductase HUE88_RS07455 PF04324 BFD-like [2Fe-2S] binding domain HUE88_RS07455 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS07465 PF07690 Major Facilitator Superfamily HUE88_RS07470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HUE88_RS07470 PF14824 Sirohaem biosynthesis protein central HUE88_RS07470 PF10414 Sirohaem synthase dimerisation region HUE88_RS07475 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HUE88_RS07475 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HUE88_RS07510 PF01381 Helix-turn-helix HUE88_RS07520 PF02796 Helix-turn-helix domain of resolvase HUE88_RS07520 PF00239 Resolvase, N terminal domain HUE88_RS07550 PF00872 Transposase, Mutator family HUE88_RS07555 PF00593 TonB dependent receptor HUE88_RS07555 PF07715 TonB-dependent Receptor Plug Domain HUE88_RS07570 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS07570 PF00072 Response regulator receiver domain HUE88_RS07600 PF13276 HTH-like domain HUE88_RS07600 PF00665 Integrase core domain HUE88_RS07600 PF13333 Integrase core domain HUE88_RS07605 PF01527 Transposase HUE88_RS07625 PF13419 Haloacid dehalogenase-like hydrolase HUE88_RS07630 PF00762 Ferrochelatase HUE88_RS07640 PF01578 Cytochrome C assembly protein HUE88_RS07640 PF05140 ResB-like family HUE88_RS07645 PF02146 Sir2 family HUE88_RS07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS07660 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS07665 PF02127 Aminopeptidase I zinc metalloprotease (M18) HUE88_RS07670 PF02811 PHP domain HUE88_RS07670 PF14579 Helix-hairpin-helix motif HUE88_RS07670 PF07733 Bacterial DNA polymerase III alpha NTPase domain HUE88_RS07670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HUE88_RS07680 PF01132 Elongation factor P (EF-P) OB domain HUE88_RS07680 PF09285 Elongation factor P, C-terminal HUE88_RS07680 PF08207 Elongation factor P (EF-P) KOW-like domain HUE88_RS07685 PF01702 Queuine tRNA-ribosyltransferase HUE88_RS07690 PF01979 Amidohydrolase family HUE88_RS07700 PF02684 Lipid-A-disaccharide synthetase HUE88_RS07705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HUE88_RS07710 PF11412 Disulphide bond corrector protein DsbC HUE88_RS07710 PF02683 Cytochrome C biogenesis protein transmembrane region HUE88_RS07725 PF00072 Response regulator receiver domain HUE88_RS07725 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS07760 PF08448 PAS fold HUE88_RS07760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS07760 PF08447 PAS fold HUE88_RS07765 PF04408 Helicase associated domain (HA2) HUE88_RS07765 PF00271 Helicase conserved C-terminal domain HUE88_RS07765 PF08482 ATP-dependent helicase C-terminal HUE88_RS07765 PF00270 DEAD/DEAH box helicase HUE88_RS07790 PF10996 Beta-Casp domain HUE88_RS07790 PF00753 Metallo-beta-lactamase superfamily HUE88_RS07790 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HUE88_RS07805 PF03190 Protein of unknown function, DUF255 HUE88_RS07810 PF08447 PAS fold HUE88_RS07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS07810 PF08448 PAS fold HUE88_RS07815 PF12833 Helix-turn-helix domain HUE88_RS07815 PF00072 Response regulator receiver domain HUE88_RS07820 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HUE88_RS07825 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HUE88_RS07830 PF17200 Single Cache domain 2 HUE88_RS07830 PF00672 HAMP domain HUE88_RS07830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS07845 PF00881 Nitroreductase family HUE88_RS07855 PF00149 Calcineurin-like phosphoesterase HUE88_RS07870 PF03649 Uncharacterised protein family (UPF0014) HUE88_RS07885 PF01634 ATP phosphoribosyltransferase HUE88_RS07890 PF03309 Type III pantothenate kinase HUE88_RS07905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HUE88_RS07910 PF00873 AcrB/AcrD/AcrF family HUE88_RS07915 PF00873 AcrB/AcrD/AcrF family HUE88_RS07920 PF01928 CYTH domain HUE88_RS07935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HUE88_RS07935 PF01842 ACT domain HUE88_RS07935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HUE88_RS07945 PF00575 S1 RNA binding domain HUE88_RS07950 PF02401 LytB protein HUE88_RS07955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HUE88_RS07960 PF03147 Ferredoxin-fold anticodon binding domain HUE88_RS07960 PF03484 tRNA synthetase B5 domain HUE88_RS07960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HUE88_RS07960 PF01588 Putative tRNA binding domain HUE88_RS07965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HUE88_RS07965 PF01409 tRNA synthetases class II core domain (F) HUE88_RS07970 PF01230 HIT domain HUE88_RS07985 PF00206 Lyase HUE88_RS07985 PF14698 Argininosuccinate lyase C-terminal HUE88_RS07995 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HUE88_RS08000 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HUE88_RS08000 PF03900 Porphobilinogen deaminase, C-terminal domain HUE88_RS08010 PF04186 FxsA cytoplasmic membrane protein HUE88_RS08015 PF03129 Anticodon binding domain HUE88_RS08015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HUE88_RS08020 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HUE88_RS08020 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HUE88_RS08020 PF01488 Shikimate / quinate 5-dehydrogenase HUE88_RS08025 PF00348 Polyprenyl synthetase HUE88_RS08040 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HUE88_RS08040 PF01266 FAD dependent oxidoreductase HUE88_RS08045 PF00696 Amino acid kinase family HUE88_RS08050 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HUE88_RS08055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HUE88_RS08060 PF02540 NAD synthase HUE88_RS08075 PF03061 Thioesterase superfamily HUE88_RS08075 PF01008 Initiation factor 2 subunit family HUE88_RS08080 PF08003 Protein of unknown function (DUF1698) HUE88_RS08085 PF01545 Cation efflux family HUE88_RS08085 PF16916 Dimerisation domain of Zinc Transporter HUE88_RS08095 PF01966 HD domain HUE88_RS08095 PF12072 Domain of unknown function (DUF3552) HUE88_RS08095 PF00013 KH domain HUE88_RS08105 PF08534 Redoxin HUE88_RS08110 PF00448 SRP54-type protein, GTPase domain HUE88_RS08115 PF00672 HAMP domain HUE88_RS08115 PF02743 Cache domain HUE88_RS08115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS08120 PF18073 Rubredoxin metal binding domain HUE88_RS08130 PF03748 Flagellar basal body-associated protein FliL HUE88_RS08135 PF01648 4'-phosphopantetheinyl transferase superfamily HUE88_RS08140 PF02597 ThiS family HUE88_RS08140 PF05690 Thiazole biosynthesis protein ThiG HUE88_RS08145 PF00072 Response regulator receiver domain HUE88_RS08145 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS08155 PF00528 Binding-protein-dependent transport system inner membrane component HUE88_RS08160 PF08402 TOBE domain HUE88_RS08160 PF00005 ABC transporter HUE88_RS08170 PF00994 Probable molybdopterin binding domain HUE88_RS08170 PF03454 MoeA C-terminal region (domain IV) HUE88_RS08170 PF03453 MoeA N-terminal region (domain I and II) HUE88_RS08190 PF02634 FdhD/NarQ family HUE88_RS08200 PF13247 4Fe-4S dicluster domain HUE88_RS08230 PF00989 PAS fold HUE88_RS08230 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS08230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS08235 PF00072 Response regulator receiver domain HUE88_RS08240 PF01206 Sulfurtransferase TusA HUE88_RS08245 PF04143 Sulphur transport HUE88_RS08250 PF00586 AIR synthase related protein, N-terminal domain HUE88_RS08250 PF02769 AIR synthase related protein, C-terminal domain HUE88_RS08260 PF03841 L-seryl-tRNA selenium transferase HUE88_RS08265 PF09107 Elongation factor SelB, winged helix HUE88_RS08265 PF09106 Elongation factor SelB, winged helix HUE88_RS08265 PF03144 Elongation factor Tu domain 2 HUE88_RS08265 PF00009 Elongation factor Tu GTP binding domain HUE88_RS08275 PF02080 TrkA-C domain HUE88_RS08275 PF03600 Citrate transporter HUE88_RS08285 PF00589 Phage integrase family HUE88_RS08285 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS08305 PF01695 IstB-like ATP binding protein HUE88_RS08310 PF02796 Helix-turn-helix domain of resolvase HUE88_RS08310 PF00665 Integrase core domain HUE88_RS08325 PF00873 AcrB/AcrD/AcrF family HUE88_RS08335 PF01795 MraW methylase family HUE88_RS08340 PF00072 Response regulator receiver domain HUE88_RS08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS08340 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS08340 PF00497 Bacterial extracellular solute-binding proteins, family 3 HUE88_RS08345 PF00171 Aldehyde dehydrogenase family HUE88_RS08350 PF14748 Pyrroline-5-carboxylate reductase dimerisation HUE88_RS08350 PF03807 NADP oxidoreductase coenzyme F420-dependent HUE88_RS08355 PF00291 Pyridoxal-phosphate dependent enzyme HUE88_RS08375 PF00005 ABC transporter HUE88_RS08380 PF02390 Putative methyltransferase HUE88_RS08390 PF00849 RNA pseudouridylate synthase HUE88_RS08390 PF01479 S4 domain HUE88_RS08395 PF01098 Cell cycle protein HUE88_RS08400 PF01814 Hemerythrin HHE cation binding domain HUE88_RS08435 PF18146 Damage-inducible protein CinA KH domain HUE88_RS08435 PF00994 Probable molybdopterin binding domain HUE88_RS08435 PF02464 Competence-damaged protein HUE88_RS08440 PF08264 Anticodon-binding domain of tRNA HUE88_RS08440 PF00133 tRNA synthetases class I (I, L, M and V) HUE88_RS08445 PF01425 Amidase HUE88_RS08455 PF00571 CBS domain HUE88_RS08455 PF00478 IMP dehydrogenase / GMP reductase domain HUE88_RS08460 PF00563 EAL domain HUE88_RS08460 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS08460 PF00498 FHA domain HUE88_RS08465 PF06271 RDD family HUE88_RS08470 PF01053 Cys/Met metabolism PLP-dependent enzyme HUE88_RS08475 PF00561 alpha/beta hydrolase fold HUE88_RS08500 PF00899 ThiF family HUE88_RS08510 PF00155 Aminotransferase class I and II HUE88_RS08520 PF01225 Mur ligase family, catalytic domain HUE88_RS08520 PF08245 Mur ligase middle domain HUE88_RS08520 PF02875 Mur ligase family, glutamate ligase domain HUE88_RS08530 PF00488 MutS domain V HUE88_RS08530 PF01713 Smr domain HUE88_RS08535 PF00916 Sulfate permease family HUE88_RS08535 PF01740 STAS domain HUE88_RS08545 PF04011 LemA family HUE88_RS08560 PF13495 Phage integrase, N-terminal SAM-like domain HUE88_RS08560 PF00589 Phage integrase family HUE88_RS08675 PF00580 UvrD/REP helicase N-terminal domain HUE88_RS08675 PF13361 UvrD-like helicase C-terminal domain HUE88_RS08685 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS08695 PF08264 Anticodon-binding domain of tRNA HUE88_RS08695 PF00133 tRNA synthetases class I (I, L, M and V) HUE88_RS08695 PF10458 Valyl tRNA synthetase tRNA binding arm HUE88_RS08700 PF01740 STAS domain HUE88_RS08700 PF00916 Sulfate permease family HUE88_RS08710 PF00563 EAL domain HUE88_RS08710 PF05231 MASE1 HUE88_RS08720 PF02107 Flagellar L-ring protein HUE88_RS08730 PF00218 Indole-3-glycerol phosphate synthase HUE88_RS08740 PF03692 Putative zinc- or iron-chelating domain HUE88_RS08745 PF05175 Methyltransferase small domain HUE88_RS08750 PF02348 Cytidylyltransferase HUE88_RS08755 PF00312 Ribosomal protein S15 HUE88_RS08760 PF02082 Transcriptional regulator HUE88_RS08765 PF00771 FHIPEP family HUE88_RS08775 PF11741 AMIN domain HUE88_RS08775 PF01520 N-acetylmuramoyl-L-alanine amidase HUE88_RS08785 PF01479 S4 domain HUE88_RS08785 PF00579 tRNA synthetases class I (W and Y) HUE88_RS08790 PF04607 Region found in RelA / SpoT proteins HUE88_RS08790 PF02824 TGS domain HUE88_RS08790 PF13291 ACT domain HUE88_RS08795 PF01192 RNA polymerase Rpb6 HUE88_RS08800 PF00696 Amino acid kinase family HUE88_RS08805 PF01814 Hemerythrin HHE cation binding domain HUE88_RS08810 PF02082 Transcriptional regulator HUE88_RS08815 PF00034 Cytochrome c HUE88_RS08820 PF00115 Cytochrome C and Quinol oxidase polypeptide I HUE88_RS08830 PF08406 CbbQ/NirQ/NorQ C-terminal HUE88_RS08830 PF07728 AAA domain (dynein-related subfamily) HUE88_RS08835 PF00293 NUDIX domain HUE88_RS08840 PF17954 Quercetinase C-terminal cupin domain HUE88_RS08840 PF02678 Pirin HUE88_RS08850 PF00271 Helicase conserved C-terminal domain HUE88_RS08850 PF00270 DEAD/DEAH box helicase HUE88_RS08855 PF13419 Haloacid dehalogenase-like hydrolase HUE88_RS08860 PF10672 S-adenosylmethionine-dependent methyltransferase HUE88_RS08860 PF17785 PUA-like domain HUE88_RS08865 PF13847 Methyltransferase domain HUE88_RS08870 PF04960 Glutaminase HUE88_RS08885 PF00384 Molybdopterin oxidoreductase HUE88_RS08885 PF01568 Molydopterin dinucleotide binding domain HUE88_RS08885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS08900 PF13180 PDZ domain HUE88_RS08910 PF01432 Peptidase family M3 HUE88_RS08920 PF03167 Uracil DNA glycosylase superfamily HUE88_RS08950 PF03641 Possible lysine decarboxylase HUE88_RS08955 PF04509 CheC-like family HUE88_RS08955 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HUE88_RS08960 PF02154 Flagellar motor switch protein FliM HUE88_RS08960 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HUE88_RS08965 PF04539 Sigma-70 region 3 HUE88_RS08965 PF04545 Sigma-70, region 4 HUE88_RS08965 PF04542 Sigma-70 region 2 HUE88_RS08975 PF10609 NUBPL iron-transfer P-loop NTPase HUE88_RS08980 PF00448 SRP54-type protein, GTPase domain HUE88_RS08985 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HUE88_RS08990 PF01220 Dehydroquinase class II HUE88_RS08995 PF01979 Amidohydrolase family HUE88_RS09000 PF01343 Peptidase family S49 HUE88_RS09010 PF13742 OB-fold nucleic acid binding domain HUE88_RS09010 PF02601 Exonuclease VII, large subunit HUE88_RS09015 PF01209 ubiE/COQ5 methyltransferase family HUE88_RS09020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HUE88_RS09020 PF01872 RibD C-terminal domain HUE88_RS09025 PF02576 RimP N-terminal domain HUE88_RS09025 PF17384 RimP C-terminal SH3 domain HUE88_RS09030 PF02033 Ribosome-binding factor A HUE88_RS09035 PF00009 Elongation factor Tu GTP binding domain HUE88_RS09035 PF11987 Translation-initiation factor 2 HUE88_RS09035 PF04760 Translation initiation factor IF-2, N-terminal region HUE88_RS09045 PF08544 GHMP kinases C terminal HUE88_RS09045 PF00288 GHMP kinases N terminal domain HUE88_RS09055 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HUE88_RS09070 PF01312 FlhB HrpN YscU SpaS Family HUE88_RS09075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HUE88_RS09075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HUE88_RS09080 PF02445 Quinolinate synthetase A protein HUE88_RS09090 PF02660 Glycerol-3-phosphate acyltransferase HUE88_RS09100 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS09100 PF00072 Response regulator receiver domain HUE88_RS09105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS09105 PF08521 Two-component sensor kinase N-terminal HUE88_RS09105 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS09110 PF00037 4Fe-4S binding domain HUE88_RS09150 PF00437 Type II/IV secretion system protein HUE88_RS09170 PF01103 Surface antigen HUE88_RS09170 PF07244 Surface antigen variable number repeat HUE88_RS09175 PF02153 Prephenate dehydrogenase HUE88_RS09185 PF13519 von Willebrand factor type A domain HUE88_RS09200 PF01882 Protein of unknown function DUF58 HUE88_RS09205 PF07726 ATPase family associated with various cellular activities (AAA) HUE88_RS09205 PF17863 AAA lid domain HUE88_RS09230 PF08448 PAS fold HUE88_RS09230 PF08447 PAS fold HUE88_RS09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS09255 PF13519 von Willebrand factor type A domain HUE88_RS09275 PF00072 Response regulator receiver domain HUE88_RS09275 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS09285 PF00909 Ammonium Transporter Family HUE88_RS09290 PF00543 Nitrogen regulatory protein P-II HUE88_RS09295 PF00909 Ammonium Transporter Family HUE88_RS09300 PF00521 DNA gyrase/topoisomerase IV, subunit A HUE88_RS09300 PF03989 DNA gyrase C-terminal domain, beta-propeller HUE88_RS09320 PF02774 Semialdehyde dehydrogenase, dimerisation domain HUE88_RS09320 PF01118 Semialdehyde dehydrogenase, NAD binding domain HUE88_RS09330 PF01208 Uroporphyrinogen decarboxylase (URO-D) HUE88_RS09335 PF04055 Radical SAM superfamily HUE88_RS09350 PF01695 IstB-like ATP binding protein HUE88_RS09355 PF00665 Integrase core domain HUE88_RS09355 PF02796 Helix-turn-helix domain of resolvase HUE88_RS09365 PF08443 RimK-like ATP-grasp domain HUE88_RS09365 PF18030 RimK PreATP-grasp domain HUE88_RS09380 PF18030 RimK PreATP-grasp domain HUE88_RS09380 PF08443 RimK-like ATP-grasp domain HUE88_RS09390 PF03448 MgtE intracellular N domain HUE88_RS09390 PF01769 Divalent cation transporter HUE88_RS09390 PF00571 CBS domain HUE88_RS09395 PF01699 Sodium/calcium exchanger protein HUE88_RS09405 PF00196 Bacterial regulatory proteins, luxR family HUE88_RS09405 PF00072 Response regulator receiver domain HUE88_RS09410 PF00072 Response regulator receiver domain HUE88_RS09410 PF00672 HAMP domain HUE88_RS09410 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS09410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS09410 PF01627 Hpt domain HUE88_RS09410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HUE88_RS09415 PF01327 Polypeptide deformylase HUE88_RS09430 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HUE88_RS09430 PF01433 Peptidase family M1 domain HUE88_RS09430 PF11940 Domain of unknown function (DUF3458) Ig-like fold HUE88_RS09435 PF02785 Biotin carboxylase C-terminal domain HUE88_RS09435 PF00289 Biotin carboxylase, N-terminal domain HUE88_RS09435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HUE88_RS09440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HUE88_RS09440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HUE88_RS09440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HUE88_RS09440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HUE88_RS09450 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS09450 PF00072 Response regulator receiver domain HUE88_RS09455 PF13581 Histidine kinase-like ATPase domain HUE88_RS09460 PF01618 MotA/TolQ/ExbB proton channel family HUE88_RS09465 PF02472 Biopolymer transport protein ExbD/TolR HUE88_RS09470 PF00580 UvrD/REP helicase N-terminal domain HUE88_RS09470 PF13361 UvrD-like helicase C-terminal domain HUE88_RS09490 PF06067 Domain of unknown function (DUF932) HUE88_RS09525 PF00589 Phage integrase family HUE88_RS09525 PF02899 Phage integrase, N-terminal SAM-like domain HUE88_RS09535 PF01638 HxlR-like helix-turn-helix HUE88_RS09540 PF05970 PIF1-like helicase HUE88_RS09540 PF02689 Helicase HUE88_RS09570 PF00873 AcrB/AcrD/AcrF family HUE88_RS09575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HUE88_RS09575 PF00529 HlyD membrane-fusion protein of T1SS HUE88_RS09585 PF00440 Bacterial regulatory proteins, tetR family HUE88_RS09585 PF08359 YsiA-like protein, C-terminal region HUE88_RS09595 PF00350 Dynamin family HUE88_RS09600 PF00350 Dynamin family HUE88_RS09605 PF08534 Redoxin HUE88_RS09610 PF01627 Hpt domain HUE88_RS09610 PF00072 Response regulator receiver domain HUE88_RS09610 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS09610 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HUE88_RS09610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS09610 PF00672 HAMP domain HUE88_RS09615 PF01739 CheR methyltransferase, SAM binding domain HUE88_RS09615 PF03705 CheR methyltransferase, all-alpha domain HUE88_RS09620 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS09620 PF00072 Response regulator receiver domain HUE88_RS09635 PF00118 TCP-1/cpn60 chaperonin family HUE88_RS09640 PF00166 Chaperonin 10 Kd subunit HUE88_RS09650 PF02687 FtsX-like permease family HUE88_RS09650 PF12704 MacB-like periplasmic core domain HUE88_RS09650 PF00005 ABC transporter HUE88_RS09700 PF14659 Phage integrase, N-terminal SAM-like domain HUE88_RS09700 PF00589 Phage integrase family HUE88_RS09745 PF00313 'Cold-shock' DNA-binding domain HUE88_RS09770 PF00849 RNA pseudouridylate synthase HUE88_RS09775 PF00270 DEAD/DEAH box helicase HUE88_RS09775 PF00271 Helicase conserved C-terminal domain HUE88_RS09785 PF01790 Prolipoprotein diacylglyceryl transferase HUE88_RS09790 PF02754 Cysteine-rich domain HUE88_RS09795 PF06969 HemN C-terminal domain HUE88_RS09795 PF04055 Radical SAM superfamily HUE88_RS09800 PF00664 ABC transporter transmembrane region HUE88_RS09800 PF00005 ABC transporter HUE88_RS09805 PF04488 Glycosyltransferase sugar-binding region containing DXD motif HUE88_RS09815 PF00483 Nucleotidyl transferase HUE88_RS09820 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HUE88_RS09825 PF04321 RmlD substrate binding domain HUE88_RS09830 PF16363 GDP-mannose 4,6 dehydratase HUE88_RS09865 PF00534 Glycosyl transferases group 1 HUE88_RS09865 PF13439 Glycosyltransferase Family 4 HUE88_RS09890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HUE88_RS09895 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain HUE88_RS09895 PF00884 Sulfatase HUE88_RS09895 PF16347 Domain of unknown function (DUF4976) HUE88_RS09895 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain HUE88_RS09895 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain HUE88_RS09920 PF00294 pfkB family carbohydrate kinase HUE88_RS09920 PF01467 Cytidylyltransferase-like HUE88_RS09925 PF01370 NAD dependent epimerase/dehydratase family HUE88_RS09940 PF00403 Heavy-metal-associated domain HUE88_RS09950 PF08645 Polynucleotide kinase 3 phosphatase HUE88_RS09955 PF13580 SIS domain HUE88_RS09985 PF00549 CoA-ligase HUE88_RS09985 PF02629 CoA binding domain HUE88_RS10000 PF00117 Glutamine amidotransferase class-I HUE88_RS10005 PF12911 N-terminal TM domain of oligopeptide transport permease C HUE88_RS10005 PF00528 Binding-protein-dependent transport system inner membrane component HUE88_RS10010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HUE88_RS10010 PF00460 Flagella basal body rod protein HUE88_RS10030 PF02119 Flagellar P-ring protein HUE88_RS10045 PF00929 Exonuclease HUE88_RS10060 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HUE88_RS10070 PF00226 DnaJ domain HUE88_RS10070 PF01556 DnaJ C terminal domain HUE88_RS10075 PF02142 MGS-like domain HUE88_RS10075 PF01808 AICARFT/IMPCHase bienzyme HUE88_RS10080 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HUE88_RS10080 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HUE88_RS10095 PF01025 GrpE HUE88_RS10100 PF00012 Hsp70 protein HUE88_RS10115 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS10120 PF00809 Pterin binding enzyme HUE88_RS10135 PF13840 ACT domain HUE88_RS10135 PF01842 ACT domain HUE88_RS10135 PF00696 Amino acid kinase family HUE88_RS10140 PF00293 NUDIX domain HUE88_RS10145 PF08447 PAS fold HUE88_RS10145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS10150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS10150 PF00672 HAMP domain HUE88_RS10150 PF17202 Single cache domain 3 HUE88_RS10155 PF04055 Radical SAM superfamily HUE88_RS10155 PF06969 HemN C-terminal domain HUE88_RS10160 PF02416 mttA/Hcf106 family HUE88_RS10165 PF00902 Sec-independent protein translocase protein (TatC) HUE88_RS10170 PF02547 Queuosine biosynthesis protein HUE88_RS10175 PF02481 DNA recombination-mediator protein A HUE88_RS10180 PF04748 Divergent polysaccharide deacetylase HUE88_RS10185 PF01250 Ribosomal protein S6 HUE88_RS10190 PF00436 Single-strand binding protein family HUE88_RS10195 PF01084 Ribosomal protein S18 HUE88_RS10200 PF00795 Carbon-nitrogen hydrolase HUE88_RS10200 PF00583 Acetyltransferase (GNAT) family HUE88_RS10225 PF08448 PAS fold HUE88_RS10225 PF08447 PAS fold HUE88_RS10225 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS10225 PF00563 EAL domain HUE88_RS10230 PF02403 Seryl-tRNA synthetase N-terminal domain HUE88_RS10230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HUE88_RS10240 PF02525 Flavodoxin-like fold HUE88_RS10250 PF00849 RNA pseudouridylate synthase HUE88_RS10250 PF01479 S4 domain HUE88_RS10260 PF02666 Phosphatidylserine decarboxylase HUE88_RS10265 PF01434 Peptidase family M41 HUE88_RS10265 PF17862 AAA+ lid domain HUE88_RS10265 PF00004 ATPase family associated with various cellular activities (AAA) HUE88_RS10275 PF00072 Response regulator receiver domain HUE88_RS10280 PF00977 Histidine biosynthesis protein HUE88_RS10285 PF00117 Glutamine amidotransferase class-I HUE88_RS10290 PF00682 HMGL-like HUE88_RS10300 PF01594 AI-2E family transporter HUE88_RS10305 PF05496 Holliday junction DNA helicase RuvB P-loop domain HUE88_RS10305 PF05491 RuvB C-terminal winged helix domain HUE88_RS10305 PF17864 RuvB AAA lid domain HUE88_RS10310 PF02548 Ketopantoate hydroxymethyltransferase HUE88_RS10320 PF00290 Tryptophan synthase alpha chain HUE88_RS10340 PF03652 Holliday junction resolvase HUE88_RS10345 PF10396 GTP-binding protein TrmE N-terminus HUE88_RS10345 PF01926 50S ribosome-binding GTPase HUE88_RS10345 PF12631 MnmE helical domain HUE88_RS10355 PF14849 YidC periplasmic domain HUE88_RS10355 PF02096 60Kd inner membrane protein HUE88_RS10360 PF01809 Putative membrane protein insertion efficiency factor HUE88_RS10365 PF00825 Ribonuclease P HUE88_RS10370 PF00468 Ribosomal protein L34 HUE88_RS10380 PF07724 AAA domain (Cdc48 subfamily) HUE88_RS10380 PF02861 Clp amino terminal domain, pathogenicity island component HUE88_RS10380 PF17871 AAA lid domain HUE88_RS10380 PF10431 C-terminal, D2-small domain, of ClpB protein HUE88_RS10380 PF00004 ATPase family associated with various cellular activities (AAA) HUE88_RS10395 PF00639 PPIC-type PPIASE domain HUE88_RS10400 PF00730 HhH-GPD superfamily base excision DNA repair protein HUE88_RS10400 PF00633 Helix-hairpin-helix motif HUE88_RS10400 PF10576 Iron-sulfur binding domain of endonuclease III HUE88_RS10415 PF13649 Methyltransferase domain HUE88_RS10425 PF01116 Fructose-bisphosphate aldolase class-II HUE88_RS10450 PF00216 Bacterial DNA-binding protein HUE88_RS10460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HUE88_RS10465 PF01384 Phosphate transporter family HUE88_RS10470 PF00578 AhpC/TSA family HUE88_RS10475 PF01568 Molydopterin dinucleotide binding domain HUE88_RS10475 PF00384 Molybdopterin oxidoreductase HUE88_RS10485 PF13247 4Fe-4S dicluster domain HUE88_RS10495 PF00815 Histidinol dehydrogenase HUE88_RS10505 PF01202 Shikimate kinase HUE88_RS10520 PF03572 Peptidase family S41 HUE88_RS10520 PF13180 PDZ domain HUE88_RS10525 PF01259 SAICAR synthetase HUE88_RS10530 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase HUE88_RS10545 PF01553 Acyltransferase HUE88_RS10550 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HUE88_RS10555 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS10555 PF00072 Response regulator receiver domain HUE88_RS10560 PF00664 ABC transporter transmembrane region HUE88_RS10560 PF00005 ABC transporter HUE88_RS10570 PF01243 Pyridoxamine 5'-phosphate oxidase HUE88_RS10580 PF00155 Aminotransferase class I and II HUE88_RS10590 PF02578 Multi-copper polyphenol oxidoreductase laccase HUE88_RS10595 PF02780 Transketolase, C-terminal domain HUE88_RS10595 PF02779 Transketolase, pyrimidine binding domain HUE88_RS10595 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HUE88_RS10605 PF14841 FliG middle domain HUE88_RS10605 PF14842 FliG N-terminal domain HUE88_RS10605 PF01706 FliG C-terminal domain HUE88_RS10610 PF08345 Flagellar M-ring protein C-terminal HUE88_RS10610 PF01514 Secretory protein of YscJ/FliF family HUE88_RS10615 PF00155 Aminotransferase class I and II HUE88_RS10620 PF01842 ACT domain HUE88_RS10620 PF01817 Chorismate mutase type II HUE88_RS10620 PF00800 Prephenate dehydratase HUE88_RS10625 PF13344 Haloacid dehalogenase-like hydrolase HUE88_RS10630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HUE88_RS10630 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HUE88_RS10640 PF01195 Peptidyl-tRNA hydrolase HUE88_RS10645 PF01386 Ribosomal L25p family HUE88_RS10645 PF14693 Ribosomal protein TL5, C-terminal domain HUE88_RS10650 PF00437 Type II/IV secretion system protein HUE88_RS10665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS10665 PF08447 PAS fold HUE88_RS10665 PF08448 PAS fold HUE88_RS10670 PF00425 chorismate binding enzyme HUE88_RS10675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HUE88_RS10675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HUE88_RS10685 PF02617 ATP-dependent Clp protease adaptor protein ClpS HUE88_RS10690 PF17871 AAA lid domain HUE88_RS10690 PF07724 AAA domain (Cdc48 subfamily) HUE88_RS10690 PF02861 Clp amino terminal domain, pathogenicity island component HUE88_RS10690 PF00004 ATPase family associated with various cellular activities (AAA) HUE88_RS10690 PF10431 C-terminal, D2-small domain, of ClpB protein HUE88_RS10695 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HUE88_RS10720 PF00246 Zinc carboxypeptidase HUE88_RS10730 PF18030 RimK PreATP-grasp domain HUE88_RS10730 PF08443 RimK-like ATP-grasp domain HUE88_RS10735 PF01546 Peptidase family M20/M25/M40 HUE88_RS10735 PF07687 Peptidase dimerisation domain HUE88_RS10740 PF01245 Ribosomal protein L19 HUE88_RS10745 PF01746 tRNA (Guanine-1)-methyltransferase HUE88_RS10750 PF01782 RimM N-terminal domain HUE88_RS10760 PF00886 Ribosomal protein S16 HUE88_RS10765 PF00448 SRP54-type protein, GTPase domain HUE88_RS10765 PF02881 SRP54-type protein, helical bundle domain HUE88_RS10765 PF02978 Signal peptide binding domain HUE88_RS10770 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HUE88_RS10775 PF01541 GIY-YIG catalytic domain HUE88_RS10780 PF00849 RNA pseudouridylate synthase HUE88_RS10785 PF00534 Glycosyl transferases group 1 HUE88_RS10785 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HUE88_RS10795 PF01784 NIF3 (NGG1p interacting factor 3) HUE88_RS10805 PF01551 Peptidase family M23 HUE88_RS10805 PF08525 Opacity-associated protein A N-terminal motif HUE88_RS10805 PF01476 LysM domain HUE88_RS10810 PF01668 SmpB protein HUE88_RS10835 PF00288 GHMP kinases N terminal domain HUE88_RS10840 PF02599 Global regulator protein family HUE88_RS10845 PF01509 TruB family pseudouridylate synthase (N terminal domain) HUE88_RS10850 PF13361 UvrD-like helicase C-terminal domain HUE88_RS10850 PF00580 UvrD/REP helicase N-terminal domain HUE88_RS10855 PF03466 LysR substrate binding domain HUE88_RS10855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HUE88_RS10865 PF01063 Amino-transferase class IV HUE88_RS10870 PF00291 Pyridoxal-phosphate dependent enzyme HUE88_RS10875 PF17158 Membrane-associated sensor, integral membrane domain HUE88_RS10875 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS10885 PF00137 ATP synthase subunit C HUE88_RS10890 PF00013 KH domain HUE88_RS10890 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HUE88_RS10890 PF01138 3' exoribonuclease family, domain 1 HUE88_RS10890 PF00575 S1 RNA binding domain HUE88_RS10890 PF03725 3' exoribonuclease family, domain 2 HUE88_RS10900 PF04453 LPS transport system D HUE88_RS10900 PF03968 OstA-like protein HUE88_RS10910 PF02844 Phosphoribosylglycinamide synthetase, N domain HUE88_RS10910 PF02843 Phosphoribosylglycinamide synthetase, C domain HUE88_RS10910 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HUE88_RS10915 PF13188 PAS domain HUE88_RS10915 PF00989 PAS fold HUE88_RS10915 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS10915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS10915 PF13426 PAS domain HUE88_RS10920 PF00158 Sigma-54 interaction domain HUE88_RS10920 PF02954 Bacterial regulatory protein, Fis family HUE88_RS10920 PF00072 Response regulator receiver domain HUE88_RS10925 PF00672 HAMP domain HUE88_RS10925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS10925 PF02743 Cache domain HUE88_RS10935 PF00117 Glutamine amidotransferase class-I HUE88_RS10935 PF00958 GMP synthase C terminal domain HUE88_RS10935 PF02540 NAD synthase HUE88_RS10940 PF03600 Citrate transporter HUE88_RS10945 PF00890 FAD binding domain HUE88_RS10960 PF02151 UvrB/uvrC motif HUE88_RS10960 PF01541 GIY-YIG catalytic domain HUE88_RS10960 PF08459 UvrC Helix-hairpin-helix N-terminal HUE88_RS10965 PF00989 PAS fold HUE88_RS10965 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS10965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS10975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HUE88_RS10975 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS10975 PF00072 Response regulator receiver domain HUE88_RS10975 PF01627 Hpt domain HUE88_RS10975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS10975 PF00672 HAMP domain HUE88_RS10980 PF00072 Response regulator receiver domain HUE88_RS10985 PF00004 ATPase family associated with various cellular activities (AAA) HUE88_RS10985 PF02190 ATP-dependent protease La (LON) substrate-binding domain HUE88_RS10985 PF05362 Lon protease (S16) C-terminal proteolytic domain HUE88_RS10990 PF13525 Outer membrane lipoprotein HUE88_RS10995 PF02623 FliW protein HUE88_RS11000 PF00746 LPXTG cell wall anchor motif HUE88_RS11020 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HUE88_RS11020 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus HUE88_RS11025 PF00271 Helicase conserved C-terminal domain HUE88_RS11025 PF04851 Type III restriction enzyme, res subunit HUE88_RS11030 PF05193 Peptidase M16 inactive domain HUE88_RS11035 PF04055 Radical SAM superfamily HUE88_RS11045 PF01029 NusB family HUE88_RS11050 PF00885 6,7-dimethyl-8-ribityllumazine synthase HUE88_RS11055 PF00793 DAHP synthetase I family HUE88_RS11075 PF05099 Tellurite resistance protein TerB HUE88_RS11075 PF00226 DnaJ domain HUE88_RS11085 PF11849 Domain of unknown function (DUF3369) HUE88_RS11090 PF00156 Phosphoribosyl transferase domain HUE88_RS11105 PF01926 50S ribosome-binding GTPase HUE88_RS11105 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HUE88_RS11110 PF03653 Uncharacterised protein family (UPF0093) HUE88_RS11120 PF00579 tRNA synthetases class I (W and Y) HUE88_RS11130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HUE88_RS11130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HUE88_RS11135 PF00490 Delta-aminolevulinic acid dehydratase HUE88_RS11140 PF00925 GTP cyclohydrolase II HUE88_RS11145 PF02527 rRNA small subunit methyltransferase G HUE88_RS11160 PF00842 Alanine racemase, C-terminal domain HUE88_RS11160 PF01168 Alanine racemase, N-terminal domain HUE88_RS11165 PF04371 Porphyromonas-type peptidyl-arginine deiminase HUE88_RS11170 PF08448 PAS fold HUE88_RS11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS11170 PF08447 PAS fold HUE88_RS11175 PF08448 PAS fold HUE88_RS11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS11175 PF08447 PAS fold HUE88_RS11180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS11180 PF08448 PAS fold HUE88_RS11180 PF13188 PAS domain HUE88_RS11180 PF00072 Response regulator receiver domain HUE88_RS11180 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS11185 PF01966 HD domain HUE88_RS11190 PF04551 GcpE protein HUE88_RS11195 PF03796 DnaB-like helicase C terminal domain HUE88_RS11195 PF00772 DnaB-like helicase N terminal domain HUE88_RS11200 PF00753 Metallo-beta-lactamase superfamily HUE88_RS11200 PF13567 Domain of unknown function (DUF4131) HUE88_RS11200 PF03772 Competence protein HUE88_RS11205 PF03631 Virulence factor BrkB HUE88_RS11210 PF02913 FAD linked oxidases, C-terminal domain HUE88_RS11210 PF01565 FAD binding domain HUE88_RS11220 PF08525 Opacity-associated protein A N-terminal motif HUE88_RS11220 PF01551 Peptidase family M23 HUE88_RS11220 PF01476 LysM domain HUE88_RS11225 PF00293 NUDIX domain HUE88_RS11230 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HUE88_RS11230 PF17764 3′ DNA-binding domain (3′BD) HUE88_RS11230 PF18074 Primosomal protein N C-terminal domain HUE88_RS11230 PF00271 Helicase conserved C-terminal domain HUE88_RS11230 PF00270 DEAD/DEAH box helicase HUE88_RS11240 PF00114 Pilin (bacterial filament) HUE88_RS11240 PF07963 Prokaryotic N-terminal methylation motif HUE88_RS11250 PF00460 Flagella basal body rod protein HUE88_RS11255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HUE88_RS11255 PF00460 Flagella basal body rod protein HUE88_RS11260 PF02049 Flagellar hook-basal body complex protein FliE HUE88_RS11270 PF02569 Pantoate-beta-alanine ligase HUE88_RS11275 PF03462 PCRF domain HUE88_RS11275 PF00472 RF-1 domain HUE88_RS11285 PF04376 Arginine-tRNA-protein transferase, N terminus HUE88_RS11285 PF04377 Arginine-tRNA-protein transferase, C terminus HUE88_RS11300 PF14492 Elongation Factor G, domain II HUE88_RS11300 PF03144 Elongation factor Tu domain 2 HUE88_RS11300 PF00009 Elongation factor Tu GTP binding domain HUE88_RS11300 PF03764 Elongation factor G, domain IV HUE88_RS11300 PF00679 Elongation factor G C-terminus HUE88_RS11305 PF00177 Ribosomal protein S7p/S5e HUE88_RS11310 PF00164 Ribosomal protein S12/S23 HUE88_RS11315 PF00623 RNA polymerase Rpb1, domain 2 HUE88_RS11315 PF04997 RNA polymerase Rpb1, domain 1 HUE88_RS11315 PF04983 RNA polymerase Rpb1, domain 3 HUE88_RS11315 PF05000 RNA polymerase Rpb1, domain 4 HUE88_RS11315 PF04998 RNA polymerase Rpb1, domain 5 HUE88_RS11320 PF04563 RNA polymerase beta subunit HUE88_RS11320 PF00562 RNA polymerase Rpb2, domain 6 HUE88_RS11320 PF10385 RNA polymerase beta subunit external 1 domain HUE88_RS11320 PF04565 RNA polymerase Rpb2, domain 3 HUE88_RS11320 PF04560 RNA polymerase Rpb2, domain 7 HUE88_RS11320 PF04561 RNA polymerase Rpb2, domain 2 HUE88_RS11325 PF16320 Ribosomal protein L7/L12 dimerisation domain HUE88_RS11325 PF00542 Ribosomal protein L7/L12 C-terminal domain HUE88_RS11330 PF00466 Ribosomal protein L10 HUE88_RS11335 PF00687 Ribosomal protein L1p/L10e family HUE88_RS11340 PF00298 Ribosomal protein L11, RNA binding domain HUE88_RS11340 PF03946 Ribosomal protein L11, N-terminal domain HUE88_RS11345 PF02357 Transcription termination factor nusG HUE88_RS11360 PF00471 Ribosomal protein L33 HUE88_RS11365 PF03143 Elongation factor Tu C-terminal domain HUE88_RS11365 PF03144 Elongation factor Tu domain 2 HUE88_RS11365 PF00009 Elongation factor Tu GTP binding domain HUE88_RS11410 PF03883 Peroxide stress protein YaaA HUE88_RS11460 PF02796 Helix-turn-helix domain of resolvase HUE88_RS11460 PF00239 Resolvase, N terminal domain HUE88_RS11465 PF02384 N-6 DNA Methylase HUE88_RS11470 PF01420 Type I restriction modification DNA specificity domain HUE88_RS11485 PF11867 Domain of unknown function (DUF3387) HUE88_RS11485 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HUE88_RS11485 PF18766 SWI2/SNF2 ATPase HUE88_RS11505 PF08032 RNA 2'-O ribose methyltransferase substrate binding HUE88_RS11505 PF00588 SpoU rRNA Methylase family HUE88_RS11525 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS11525 PF08448 PAS fold HUE88_RS11530 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HUE88_RS11545 PF00456 Transketolase, thiamine diphosphate binding domain HUE88_RS11545 PF02779 Transketolase, pyrimidine binding domain HUE88_RS11545 PF02780 Transketolase, C-terminal domain HUE88_RS11550 PF00348 Polyprenyl synthetase HUE88_RS11560 PF02575 YbaB/EbfC DNA-binding family HUE88_RS11565 PF02261 Aspartate decarboxylase HUE88_RS11575 PF02875 Mur ligase family, glutamate ligase domain HUE88_RS11575 PF08245 Mur ligase middle domain HUE88_RS11585 PF01106 NifU-like domain HUE88_RS11595 PF01196 Ribosomal protein L17 HUE88_RS11600 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HUE88_RS11600 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HUE88_RS11600 PF01000 RNA polymerase Rpb3/RpoA insert domain HUE88_RS11605 PF01479 S4 domain HUE88_RS11605 PF00163 Ribosomal protein S4/S9 N-terminal domain HUE88_RS11610 PF00411 Ribosomal protein S11 HUE88_RS11615 PF00416 Ribosomal protein S13/S18 HUE88_RS11620 PF00444 Ribosomal protein L36 HUE88_RS11640 PF01022 Bacterial regulatory protein, arsR family HUE88_RS11645 PF01451 Low molecular weight phosphotyrosine protein phosphatase HUE88_RS11650 PF02040 Arsenical pump membrane protein HUE88_RS11665 PF00391 PEP-utilising enzyme, mobile domain HUE88_RS11665 PF00224 Pyruvate kinase, barrel domain HUE88_RS11665 PF02887 Pyruvate kinase, alpha/beta domain HUE88_RS11680 PF01553 Acyltransferase HUE88_RS11685 PF00291 Pyridoxal-phosphate dependent enzyme HUE88_RS11705 PF01176 Translation initiation factor 1A / IF-1 HUE88_RS11710 PF00557 Metallopeptidase family M24 HUE88_RS11715 PF00344 SecY translocase HUE88_RS11720 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HUE88_RS11725 PF00333 Ribosomal protein S5, N-terminal domain HUE88_RS11725 PF03719 Ribosomal protein S5, C-terminal domain HUE88_RS11730 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HUE88_RS11735 PF00347 Ribosomal protein L6 HUE88_RS11740 PF00410 Ribosomal protein S8 HUE88_RS11745 PF00253 Ribosomal protein S14p/S29e HUE88_RS11750 PF00281 Ribosomal protein L5 HUE88_RS11750 PF00673 ribosomal L5P family C-terminus HUE88_RS11755 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HUE88_RS11755 PF00467 KOW motif HUE88_RS11760 PF00238 Ribosomal protein L14p/L23e HUE88_RS11765 PF00366 Ribosomal protein S17 HUE88_RS11770 PF00831 Ribosomal L29 protein HUE88_RS11775 PF00252 Ribosomal protein L16p/L10e HUE88_RS11780 PF07650 KH domain HUE88_RS11780 PF00189 Ribosomal protein S3, C-terminal domain HUE88_RS11785 PF00237 Ribosomal protein L22p/L17e HUE88_RS11790 PF00203 Ribosomal protein S19 HUE88_RS11795 PF03947 Ribosomal Proteins L2, C-terminal domain HUE88_RS11795 PF00181 Ribosomal Proteins L2, RNA binding domain HUE88_RS11800 PF00276 Ribosomal protein L23 HUE88_RS11805 PF00573 Ribosomal protein L4/L1 family HUE88_RS11810 PF00297 Ribosomal protein L3 HUE88_RS11815 PF00338 Ribosomal protein S10p/S20e HUE88_RS11825 PF01351 Ribonuclease HII HUE88_RS11875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS11880 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS11880 PF00072 Response regulator receiver domain HUE88_RS11895 PF00994 Probable molybdopterin binding domain HUE88_RS11895 PF03454 MoeA C-terminal region (domain IV) HUE88_RS11895 PF03453 MoeA N-terminal region (domain I and II) HUE88_RS11900 PF02391 MoaE protein HUE88_RS11910 PF02621 Menaquinone biosynthesis HUE88_RS11915 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS11915 PF00563 EAL domain HUE88_RS11915 PF03707 Bacterial signalling protein N terminal repeat HUE88_RS11920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HUE88_RS11920 PF00128 Alpha amylase, catalytic domain HUE88_RS11920 PF02806 Alpha amylase, C-terminal all-beta domain HUE88_RS11925 PF00534 Glycosyl transferases group 1 HUE88_RS11925 PF08323 Starch synthase catalytic domain HUE88_RS11930 PF00480 ROK family HUE88_RS11935 PF00534 Glycosyl transferases group 1 HUE88_RS11935 PF08323 Starch synthase catalytic domain HUE88_RS11945 PF09094 Domain of unknown function (DUF1925) HUE88_RS11945 PF03065 Glycosyl hydrolase family 57 HUE88_RS11945 PF09095 Domain of unknown function (DUF1926) HUE88_RS11955 PF00483 Nucleotidyl transferase HUE88_RS11965 PF00365 Phosphofructokinase HUE88_RS11970 PF11897 Protein of unknown function (DUF3417) HUE88_RS11970 PF00343 Carbohydrate phosphorylase HUE88_RS11975 PF00342 Phosphoglucose isomerase HUE88_RS11980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HUE88_RS11980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HUE88_RS12005 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS12030 PF00589 Phage integrase family HUE88_RS12045 PF12161 HsdM N-terminal domain HUE88_RS12045 PF02384 N-6 DNA Methylase HUE88_RS12050 PF01420 Type I restriction modification DNA specificity domain HUE88_RS12070 PF00072 Response regulator receiver domain HUE88_RS12070 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS12075 PF08338 Domain of unknown function (DUF1731) HUE88_RS12075 PF01370 NAD dependent epimerase/dehydratase family HUE88_RS12080 PF14490 Helix-hairpin-helix containing domain HUE88_RS12080 PF13538 UvrD-like helicase C-terminal domain HUE88_RS12080 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain HUE88_RS12085 PF02091 Glycyl-tRNA synthetase alpha subunit HUE88_RS12100 PF00731 AIR carboxylase HUE88_RS12105 PF01136 Peptidase family U32 HUE88_RS12115 PF02811 PHP domain HUE88_RS12120 PF00085 Thioredoxin HUE88_RS12130 PF07992 Pyridine nucleotide-disulphide oxidoreductase HUE88_RS12135 PF05173 Dihydrodipicolinate reductase, C-terminus HUE88_RS12135 PF01113 Dihydrodipicolinate reductase, N-terminus HUE88_RS12140 PF13537 Glutamine amidotransferase domain HUE88_RS12140 PF00156 Phosphoribosyl transferase domain HUE88_RS12145 PF04055 Radical SAM superfamily HUE88_RS12145 PF16199 Radical_SAM C-terminal domain HUE88_RS12160 PF01502 Phosphoribosyl-AMP cyclohydrolase HUE88_RS12160 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HUE88_RS12170 PF01063 Amino-transferase class IV HUE88_RS12180 PF12849 PBP superfamily domain HUE88_RS12185 PF03976 Polyphosphate kinase 2 (PPK2) HUE88_RS12190 PF00528 Binding-protein-dependent transport system inner membrane component HUE88_RS12195 PF00528 Binding-protein-dependent transport system inner membrane component HUE88_RS12200 PF00005 ABC transporter HUE88_RS12210 PF00120 Glutamine synthetase, catalytic domain HUE88_RS12210 PF03951 Glutamine synthetase, beta-Grasp domain HUE88_RS12215 PF00072 Response regulator receiver domain HUE88_RS12215 PF01627 Hpt domain HUE88_RS12215 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS12215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS12215 PF00672 HAMP domain HUE88_RS12220 PF08502 LeuA allosteric (dimerisation) domain HUE88_RS12220 PF00682 HMGL-like HUE88_RS12225 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS12225 PF00072 Response regulator receiver domain HUE88_RS12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS12245 PF00905 Penicillin binding protein transpeptidase domain HUE88_RS12245 PF00912 Transglycosylase HUE88_RS12250 PF00005 ABC transporter HUE88_RS12250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HUE88_RS12255 PF00155 Aminotransferase class I and II HUE88_RS12260 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS12260 PF00072 Response regulator receiver domain HUE88_RS12265 PF02545 Maf-like protein HUE88_RS12275 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HUE88_RS12275 PF02272 DHHA1 domain HUE88_RS12275 PF01411 tRNA synthetases class II (A) HUE88_RS12295 PF01578 Cytochrome C assembly protein HUE88_RS12295 PF05140 ResB-like family HUE88_RS12300 PF00082 Subtilase family HUE88_RS12310 PF01578 Cytochrome C assembly protein HUE88_RS12310 PF05140 ResB-like family HUE88_RS12315 PF01578 Cytochrome C assembly protein HUE88_RS12315 PF05140 ResB-like family HUE88_RS12340 PF00639 PPIC-type PPIASE domain HUE88_RS12380 PF00171 Aldehyde dehydrogenase family HUE88_RS12395 PF02021 Uncharacterised protein family UPF0102 HUE88_RS12400 PF01568 Molydopterin dinucleotide binding domain HUE88_RS12400 PF00384 Molybdopterin oxidoreductase HUE88_RS12400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HUE88_RS12405 PF00106 short chain dehydrogenase HUE88_RS12410 PF00742 Homoserine dehydrogenase HUE88_RS12410 PF03447 Homoserine dehydrogenase, NAD binding domain HUE88_RS12410 PF01842 ACT domain HUE88_RS12415 PF00155 Aminotransferase class I and II HUE88_RS12430 PF08032 RNA 2'-O ribose methyltransferase substrate binding HUE88_RS12430 PF00588 SpoU rRNA Methylase family HUE88_RS12435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HUE88_RS12440 PF01197 Ribosomal protein L31 HUE88_RS12455 PF03454 MoeA C-terminal region (domain IV) HUE88_RS12455 PF00994 Probable molybdopterin binding domain HUE88_RS12455 PF03453 MoeA N-terminal region (domain I and II) HUE88_RS12475 PF04055 Radical SAM superfamily HUE88_RS12475 PF06463 Molybdenum Cofactor Synthesis C HUE88_RS12500 PF00032 Cytochrome b(C-terminal)/b6/petD HUE88_RS12500 PF00033 Cytochrome b/b6/petB HUE88_RS12505 PF00355 Rieske [2Fe-2S] domain HUE88_RS12515 PF01134 Glucose inhibited division protein A HUE88_RS12515 PF13932 GidA associated domain HUE88_RS12525 PF00677 Lumazine binding domain HUE88_RS12535 PF09382 RQC domain HUE88_RS12535 PF16124 RecQ zinc-binding HUE88_RS12535 PF00570 HRDC domain HUE88_RS12535 PF00271 Helicase conserved C-terminal domain HUE88_RS12535 PF00270 DEAD/DEAH box helicase HUE88_RS12540 PF17284 Spermidine synthase tetramerisation domain HUE88_RS12560 PF02664 S-Ribosylhomocysteinase (LuxS) HUE88_RS12565 PF02743 Cache domain HUE88_RS12565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS12565 PF00672 HAMP domain HUE88_RS12570 PF01339 CheB methylesterase HUE88_RS12570 PF00072 Response regulator receiver domain HUE88_RS12575 PF03705 CheR methyltransferase, all-alpha domain HUE88_RS12575 PF01739 CheR methyltransferase, SAM binding domain HUE88_RS12580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HUE88_RS12585 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HUE88_RS12585 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HUE88_RS12595 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HUE88_RS12600 PF13419 Haloacid dehalogenase-like hydrolase HUE88_RS12610 PF00380 Ribosomal protein S9/S16 HUE88_RS12615 PF00572 Ribosomal protein L13 HUE88_RS12630 PF13361 UvrD-like helicase C-terminal domain HUE88_RS12630 PF00580 UvrD/REP helicase N-terminal domain HUE88_RS12680 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HUE88_RS12680 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HUE88_RS12695 PF00115 Cytochrome C and Quinol oxidase polypeptide I HUE88_RS12700 PF00117 Glutamine amidotransferase class-I HUE88_RS12700 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HUE88_RS12720 PF00709 Adenylosuccinate synthetase HUE88_RS12725 PF13393 Histidyl-tRNA synthetase HUE88_RS12730 PF00266 Aminotransferase class-V HUE88_RS12735 PF02673 Bacitracin resistance protein BacA HUE88_RS12745 PF07992 Pyridine nucleotide-disulphide oxidoreductase HUE88_RS12745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HUE88_RS12750 PF04055 Radical SAM superfamily HUE88_RS12755 PF13193 AMP-binding enzyme C-terminal domain HUE88_RS12755 PF00501 AMP-binding enzyme HUE88_RS12760 PF00676 Dehydrogenase E1 component HUE88_RS12765 PF02779 Transketolase, pyrimidine binding domain HUE88_RS12765 PF00364 Biotin-requiring enzyme HUE88_RS12765 PF02780 Transketolase, C-terminal domain HUE88_RS12770 PF00364 Biotin-requiring enzyme HUE88_RS12770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HUE88_RS12770 PF02817 e3 binding domain HUE88_RS12775 PF00550 Phosphopantetheine attachment site HUE88_RS12785 PF00689 Cation transporting ATPase, C-terminus HUE88_RS12785 PF00690 Cation transporter/ATPase, N-terminus HUE88_RS12790 PF04055 Radical SAM superfamily HUE88_RS12795 PF00437 Type II/IV secretion system protein HUE88_RS12795 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HUE88_RS12800 PF01725 Ham1 family HUE88_RS12805 PF07690 Major Facilitator Superfamily HUE88_RS12810 PF00664 ABC transporter transmembrane region HUE88_RS12810 PF00005 ABC transporter HUE88_RS12815 PF05198 Translation initiation factor IF-3, N-terminal domain HUE88_RS12815 PF00707 Translation initiation factor IF-3, C-terminal domain HUE88_RS12820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HUE88_RS12820 PF03129 Anticodon binding domain HUE88_RS12820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HUE88_RS12825 PF00920 Dehydratase family HUE88_RS12865 PF06067 Domain of unknown function (DUF932) HUE88_RS12890 PF00082 Subtilase family HUE88_RS12950 PF00924 Mechanosensitive ion channel HUE88_RS12950 PF12794 Mechanosensitive ion channel inner membrane domain 1 HUE88_RS12950 PF12795 Mechanosensitive ion channel porin domain HUE88_RS12965 PF11066 Protein of unknown function (DUF2867) HUE88_RS12965 PF13460 NAD(P)H-binding HUE88_RS12975 PF00474 Sodium:solute symporter family HUE88_RS13000 PF07152 YaeQ protein HUE88_RS13010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS13010 PF08447 PAS fold HUE88_RS13010 PF08448 PAS fold HUE88_RS13015 PF00072 Response regulator receiver domain HUE88_RS13015 PF00486 Transcriptional regulatory protein, C terminal HUE88_RS13020 PF05690 Thiazole biosynthesis protein ThiG HUE88_RS13025 PF03853 YjeF-related protein N-terminus HUE88_RS13025 PF01256 Carbohydrate kinase HUE88_RS13035 PF00034 Cytochrome c HUE88_RS13035 PF03150 Di-haem cytochrome c peroxidase HUE88_RS13040 PF00551 Formyl transferase HUE88_RS13045 PF01380 SIS domain HUE88_RS13045 PF00571 CBS domain HUE88_RS13050 PF00849 RNA pseudouridylate synthase HUE88_RS13050 PF01479 S4 domain HUE88_RS13055 PF05496 Holliday junction DNA helicase RuvB P-loop domain HUE88_RS13055 PF12002 MgsA AAA+ ATPase C terminal HUE88_RS13055 PF01661 Macro domain HUE88_RS13055 PF16193 AAA C-terminal domain HUE88_RS13060 PF00453 Ribosomal protein L20 HUE88_RS13065 PF01632 Ribosomal protein L35 HUE88_RS13085 PF00106 short chain dehydrogenase HUE88_RS13095 PF02561 Flagellar protein FliS HUE88_RS13100 PF02465 Flagellar hook-associated protein 2 N-terminus HUE88_RS13100 PF07195 Flagellar hook-associated protein 2 C-terminus HUE88_RS13105 PF00700 Bacterial flagellin C-terminal helical region HUE88_RS13105 PF00669 Bacterial flagellin N-terminal helical region HUE88_RS13105 PF07196 Flagellin hook IN motif HUE88_RS13110 PF00700 Bacterial flagellin C-terminal helical region HUE88_RS13110 PF00669 Bacterial flagellin N-terminal helical region HUE88_RS13115 PF00700 Bacterial flagellin C-terminal helical region HUE88_RS13115 PF00669 Bacterial flagellin N-terminal helical region HUE88_RS13120 PF00700 Bacterial flagellin C-terminal helical region HUE88_RS13120 PF00669 Bacterial flagellin N-terminal helical region HUE88_RS13125 PF01131 DNA topoisomerase HUE88_RS13125 PF01751 Toprim domain HUE88_RS13125 PF01396 Topoisomerase DNA binding C4 zinc finger HUE88_RS13135 PF06968 Biotin and Thiamin Synthesis associated domain HUE88_RS13135 PF04055 Radical SAM superfamily HUE88_RS13140 PF00999 Sodium/hydrogen exchanger family HUE88_RS13140 PF02080 TrkA-C domain HUE88_RS13140 PF02254 TrkA-N domain HUE88_RS13165 PF02687 FtsX-like permease family HUE88_RS13165 PF12704 MacB-like periplasmic core domain HUE88_RS13165 PF00005 ABC transporter HUE88_RS13180 PF00149 Calcineurin-like phosphoesterase HUE88_RS13220 PF00113 Enolase, C-terminal TIM barrel domain HUE88_RS13220 PF03952 Enolase, N-terminal domain HUE88_RS13225 PF00154 recA bacterial DNA recombination protein HUE88_RS13230 PF02621 Menaquinone biosynthesis HUE88_RS13235 PF01313 Bacterial export proteins, family 3 HUE88_RS13240 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HUE88_RS13245 PF01106 NifU-like domain HUE88_RS13245 PF01592 NifU-like N terminal domain HUE88_RS13245 PF04324 BFD-like [2Fe-2S] binding domain HUE88_RS13250 PF00266 Aminotransferase class-V HUE88_RS13270 PF00330 Aconitase family (aconitate hydratase) HUE88_RS13275 PF00691 OmpA family HUE88_RS13275 PF13488 Glycine zipper HUE88_RS13280 PF12804 MobA-like NTP transferase domain HUE88_RS13285 PF01967 MoaC family HUE88_RS13300 PF01264 Chorismate synthase HUE88_RS13305 PF14622 Ribonuclease-III-like HUE88_RS13305 PF00035 Double-stranded RNA binding motif HUE88_RS13310 PF00075 RNase H HUE88_RS13325 PF03601 Conserved hypothetical protein 698 HUE88_RS13340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HUE88_RS13340 PF17200 Single Cache domain 2 HUE88_RS13340 PF00672 HAMP domain HUE88_RS13345 PF02965 Vitamin B12 dependent methionine synthase, activation domain HUE88_RS13345 PF02310 B12 binding domain HUE88_RS13345 PF02574 Homocysteine S-methyltransferase HUE88_RS13345 PF02607 B12 binding domain HUE88_RS13345 PF00809 Pterin binding enzyme HUE88_RS13350 PF00072 Response regulator receiver domain HUE88_RS13350 PF00196 Bacterial regulatory proteins, luxR family HUE88_RS13355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HUE88_RS13355 PF00512 His Kinase A (phospho-acceptor) domain HUE88_RS13355 PF00989 PAS fold HUE88_RS13360 PF01078 Magnesium chelatase, subunit ChlI HUE88_RS13360 PF13335 Magnesium chelatase, subunit ChlI C-terminal HUE88_RS13365 PF01327 Polypeptide deformylase HUE88_RS13375 PF00574 Clp protease HUE88_RS13380 PF05698 Bacterial trigger factor protein (TF) C-terminus HUE88_RS13380 PF05697 Bacterial trigger factor protein (TF) HUE88_RS13380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HUE88_RS13385 PF01252 Signal peptidase (SPase) II HUE88_RS13390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HUE88_RS13390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HUE88_RS13390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HUE88_RS13390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HUE88_RS13395 PF01649 Ribosomal protein S20 HUE88_RS13400 PF00472 RF-1 domain HUE88_RS13400 PF03462 PCRF domain HUE88_RS13405 PF01678 Diaminopimelate epimerase HUE88_RS13410 PF01121 Dephospho-CoA kinase HUE88_RS13415 PF17284 Spermidine synthase tetramerisation domain HUE88_RS13430 PF02769 AIR synthase related protein, C-terminal domain HUE88_RS13430 PF00586 AIR synthase related protein, N-terminal domain HUE88_RS13470 PF01027 Inhibitor of apoptosis-promoting Bax1 HUE88_RS13475 PF17792 ThiD2 family HUE88_RS13475 PF02581 Thiamine monophosphate synthase HUE88_RS13515 PF00950 ABC 3 transport family HUE88_RS13520 PF00005 ABC transporter HUE88_RS13525 PF01297 Zinc-uptake complex component A periplasmic HUE88_RS13525 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment HUE88_RS13530 PF03840 Preprotein translocase SecG subunit HUE88_RS13535 PF01765 Ribosome recycling factor HUE88_RS13540 PF00156 Phosphoribosyl transferase domain HUE88_RS13545 PF00933 Glycosyl hydrolase family 3 N terminal domain HUE88_RS13545 PF01915 Glycosyl hydrolase family 3 C-terminal domain HUE88_RS13555 PF03702 Anhydro-N-acetylmuramic acid kinase HUE88_RS13560 PF01636 Phosphotransferase enzyme family HUE88_RS13565 PF00483 Nucleotidyl transferase HUE88_RS13570 PF00990 Diguanylate cyclase, GGDEF domain HUE88_RS13570 PF03707 Bacterial signalling protein N terminal repeat HUE88_RS13570 PF00563 EAL domain HUE88_RS13580 PF01263 Aldose 1-epimerase HUE88_RS13585 PF07690 Major Facilitator Superfamily HUE88_RS13595 PF00999 Sodium/hydrogen exchanger family HUE88_RS13595 PF02254 TrkA-N domain HUE88_RS13605 PF06418 CTP synthase N-terminus HUE88_RS13605 PF00117 Glutamine amidotransferase class-I HUE88_RS13610 PF01368 DHH family HUE88_RS13610 PF17768 RecJ OB domain HUE88_RS13610 PF02272 DHHA1 domain HUE88_RS13610 PF10141 Single-strand DNA-specific exonuclease, C terminal domain HUE88_RS13630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HUE88_RS13630 PF18269 T3SS EscN ATPase C-terminal domain HUE88_RS13635 PF01227 GTP cyclohydrolase I HUE88_RS13640 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HUE88_RS13640 PF17770 Ribonuclease J C-terminal domain HUE88_RS13640 PF00753 Metallo-beta-lactamase superfamily HUE88_RS13645 PF00398 Ribosomal RNA adenine dimethylase HUE88_RS13650 PF00977 Histidine biosynthesis protein HUE88_RS13660 PF04055 Radical SAM superfamily HUE88_RS13670 PF00849 RNA pseudouridylate synthase HUE88_RS13675 PF00206 Lyase HUE88_RS13675 PF10397 Adenylosuccinate lyase C-terminus HUE88_RS13680 PF02867 Ribonucleotide reductase, barrel domain HUE88_RS13680 PF00317 Ribonucleotide reductase, all-alpha domain HUE88_RS13680 PF03477 ATP cone domain HUE88_RS13690 PF02623 FliW protein HUE88_RS13700 PF00085 Thioredoxin HUE88_RS13705 PF00285 Citrate synthase, C-terminal domain HUE88_RS13710 PF06865 Pyrimidine/purine nucleoside phosphorylase HUE88_RS13720 PF02075 Crossover junction endodeoxyribonuclease RuvC