locus-tag class description SHALO_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix SHALO_RS00005 PF00308 Bacterial dnaA protein SHALO_RS00005 PF11638 DnaA N-terminal domain SHALO_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain SHALO_RS00010 PF02767 DNA polymerase III beta subunit, central domain SHALO_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain SHALO_RS00015 PF00204 DNA gyrase B SHALO_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus SHALO_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS00015 PF01751 Toprim domain SHALO_RS00020 PF00563 EAL domain SHALO_RS00025 PF14489 QueF-like protein SHALO_RS00040 PF03167 Uracil DNA glycosylase superfamily SHALO_RS00045 PF14815 NUDIX domain SHALO_RS00045 PF00730 HhH-GPD superfamily base excision DNA repair protein SHALO_RS00045 PF00633 Helix-hairpin-helix motif SHALO_RS00050 PF00571 CBS domain SHALO_RS00050 PF00005 ABC transporter SHALO_RS00055 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS00060 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SHALO_RS00065 PF07690 Major Facilitator Superfamily SHALO_RS00070 PF05681 Fumarate hydratase (Fumerase) SHALO_RS00075 PF05683 Fumarase C-terminus SHALO_RS00085 PF00330 Aconitase family (aconitate hydratase) SHALO_RS00090 PF00694 Aconitase C-terminal domain SHALO_RS00120 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS00130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS00140 PF02080 TrkA-C domain SHALO_RS00140 PF06826 Predicted Permease Membrane Region SHALO_RS00150 PF08448 PAS fold SHALO_RS00150 PF08447 PAS fold SHALO_RS00150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS00155 PF00072 Response regulator receiver domain SHALO_RS00155 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS00160 PF17425 Arylsulfotransferase Ig-like domain SHALO_RS00160 PF05935 Arylsulfotransferase (ASST) SHALO_RS00165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS00165 PF00672 HAMP domain SHALO_RS00165 PF02743 Cache domain SHALO_RS00170 PF02600 Disulfide bond formation protein DsbB SHALO_RS00175 PF01323 DSBA-like thioredoxin domain SHALO_RS00185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_RS00185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_RS00190 PF00857 Isochorismatase family SHALO_RS00195 PF00440 Bacterial regulatory proteins, tetR family SHALO_RS00195 PF16925 Tetracyclin repressor-like, C-terminal domain SHALO_RS00205 PF12833 Helix-turn-helix domain SHALO_RS00205 PF06445 GyrI-like small molecule binding domain SHALO_RS00210 PF08241 Methyltransferase domain SHALO_RS00220 PF01875 Memo-like protein SHALO_RS00240 PF12833 Helix-turn-helix domain SHALO_RS00250 PF05728 Uncharacterised protein family (UPF0227) SHALO_RS00255 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_RS00255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SHALO_RS00265 PF00384 Molybdopterin oxidoreductase SHALO_RS00265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS00265 PF01568 Molydopterin dinucleotide binding domain SHALO_RS00270 PF00589 Phage integrase family SHALO_RS00270 PF02899 Phage integrase, N-terminal SAM-like domain SHALO_RS00300 PF00145 C-5 cytosine-specific DNA methylase SHALO_RS00310 PF01043 SecA preprotein cross-linking domain SHALO_RS00310 PF07517 SecA DEAD-like domain SHALO_RS00310 PF02810 SEC-C motif SHALO_RS00310 PF07516 SecA Wing and Scaffold domain SHALO_RS00320 PF02661 Fic/DOC family SHALO_RS00320 PF18543 Intracellular delivery domain SHALO_RS00395 PF18340 DNA relaxase TraI 2B/2B-like domain SHALO_RS00395 PF08751 TrwC relaxase SHALO_RS00395 PF18272 single-stranded DNA binding TraI N-terminal subdomain SHALO_RS00395 PF07057 DNA helicase TraI SHALO_RS00410 PF05973 Phage derived protein Gp49-like (DUF891) SHALO_RS00435 PF00920 Dehydratase family SHALO_RS00440 PF01914 MarC family integral membrane protein SHALO_RS00450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS00450 PF08447 PAS fold SHALO_RS00450 PF13426 PAS domain SHALO_RS00455 PF00483 Nucleotidyl transferase SHALO_RS00460 PF06418 CTP synthase N-terminus SHALO_RS00460 PF00117 Glutamine amidotransferase class-I SHALO_RS00465 PF01368 DHH family SHALO_RS00465 PF17768 RecJ OB domain SHALO_RS00465 PF02272 DHHA1 domain SHALO_RS00475 PF00795 Carbon-nitrogen hydrolase SHALO_RS00480 PF00268 Ribonucleotide reductase, small chain SHALO_RS00490 PF04055 Radical SAM superfamily SHALO_RS00495 PF03477 ATP cone domain SHALO_RS00495 PF13597 Anaerobic ribonucleoside-triphosphate reductase SHALO_RS00500 PF01177 Asp/Glu/Hydantoin racemase SHALO_RS00505 PF00317 Ribonucleotide reductase, all-alpha domain SHALO_RS00505 PF02867 Ribonucleotide reductase, barrel domain SHALO_RS00505 PF03477 ATP cone domain SHALO_RS00510 PF10397 Adenylosuccinate lyase C-terminus SHALO_RS00510 PF00206 Lyase SHALO_RS00515 PF00849 RNA pseudouridylate synthase SHALO_RS00520 PF01557 Fumarylacetoacetate (FAA) hydrolase family SHALO_RS00525 PF04055 Radical SAM superfamily SHALO_RS00535 PF00977 Histidine biosynthesis protein SHALO_RS00540 PF00398 Ribosomal RNA adenine dimethylase SHALO_RS00545 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SHALO_RS00545 PF17770 Ribonuclease J C-terminal domain SHALO_RS00545 PF00753 Metallo-beta-lactamase superfamily SHALO_RS00550 PF00571 CBS domain SHALO_RS00550 PF01380 SIS domain SHALO_RS00555 PF00849 RNA pseudouridylate synthase SHALO_RS00555 PF01479 S4 domain SHALO_RS00560 PF05496 Holliday junction DNA helicase RuvB P-loop domain SHALO_RS00560 PF16193 AAA C-terminal domain SHALO_RS00560 PF12002 MgsA AAA+ ATPase C terminal SHALO_RS00560 PF01661 Macro domain SHALO_RS00570 PF01312 FlhB HrpN YscU SpaS Family SHALO_RS00580 PF02769 AIR synthase related protein, C-terminal domain SHALO_RS00580 PF00586 AIR synthase related protein, N-terminal domain SHALO_RS00585 PF01121 Dephospho-CoA kinase SHALO_RS00590 PF01678 Diaminopimelate epimerase SHALO_RS00600 PF03462 PCRF domain SHALO_RS00600 PF00472 RF-1 domain SHALO_RS00605 PF01649 Ribosomal protein S20 SHALO_RS00620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SHALO_RS00620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SHALO_RS00620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SHALO_RS00620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SHALO_RS00625 PF01252 Signal peptidase (SPase) II SHALO_RS00635 PF03129 Anticodon binding domain SHALO_RS00635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_RS00635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_RS00640 PF00707 Translation initiation factor IF-3, C-terminal domain SHALO_RS00640 PF05198 Translation initiation factor IF-3, N-terminal domain SHALO_RS00645 PF01632 Ribosomal protein L35 SHALO_RS00650 PF00453 Ribosomal protein L20 SHALO_RS00655 PF13746 4Fe-4S dicluster domain SHALO_RS00655 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SHALO_RS00655 PF12801 4Fe-4S binding domain SHALO_RS00665 PF01165 Ribosomal protein S21 SHALO_RS00680 PF03738 Glutathionylspermidine synthase preATP-grasp SHALO_RS00685 PF04461 Protein of unknown function (DUF520) SHALO_RS00695 PF01219 Prokaryotic diacylglycerol kinase SHALO_RS00700 PF01274 Malate synthase SHALO_RS00725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS00730 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS00730 PF00072 Response regulator receiver domain SHALO_RS00745 PF02470 MlaD protein SHALO_RS00750 PF00005 ABC transporter SHALO_RS00755 PF02405 Permease MlaE SHALO_RS00760 PF01625 Peptide methionine sulfoxide reductase SHALO_RS00765 PF01914 MarC family integral membrane protein SHALO_RS00770 PF16591 Helical bimodular sensor domain SHALO_RS00770 PF00672 HAMP domain SHALO_RS00770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS00780 PF11849 Domain of unknown function (DUF3369) SHALO_RS00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS00800 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS00805 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS00805 PF00072 Response regulator receiver domain SHALO_RS00810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SHALO_RS00815 PF00543 Nitrogen regulatory protein P-II SHALO_RS00820 PF00909 Ammonium Transporter Family SHALO_RS00825 PF00248 Aldo/keto reductase family SHALO_RS00835 PF00072 Response regulator receiver domain SHALO_RS00835 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS00850 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS00855 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_RS00860 PF00005 ABC transporter SHALO_RS00880 PF00950 ABC 3 transport family SHALO_RS00885 PF00005 ABC transporter SHALO_RS00905 PF01261 Xylose isomerase-like TIM barrel SHALO_RS00915 PF00501 AMP-binding enzyme SHALO_RS00915 PF13193 AMP-binding enzyme C-terminal domain SHALO_RS00920 PF01434 Peptidase family M41 SHALO_RS00920 PF06480 FtsH Extracellular SHALO_RS00920 PF17862 AAA+ lid domain SHALO_RS00920 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_RS00925 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SHALO_RS00930 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_RS00935 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_RS00940 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_RS00955 PF13237 4Fe-4S dicluster domain SHALO_RS00955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_RS00955 PF01568 Molydopterin dinucleotide binding domain SHALO_RS00955 PF00384 Molybdopterin oxidoreductase SHALO_RS00955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS00960 PF00146 NADH dehydrogenase SHALO_RS00965 PF12838 4Fe-4S dicluster domain SHALO_RS00970 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SHALO_RS00975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_RS00980 PF00361 Proton-conducting membrane transporter SHALO_RS00980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_RS00985 PF00361 Proton-conducting membrane transporter SHALO_RS00990 PF00361 Proton-conducting membrane transporter SHALO_RS01000 PF00171 Aldehyde dehydrogenase family SHALO_RS01025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS01025 PF16591 Helical bimodular sensor domain SHALO_RS01025 PF00672 HAMP domain SHALO_RS01035 PF06463 Molybdenum Cofactor Synthesis C SHALO_RS01035 PF04055 Radical SAM superfamily SHALO_RS01040 PF00994 Probable molybdopterin binding domain SHALO_RS01040 PF18146 Damage-inducible protein CinA KH domain SHALO_RS01040 PF02464 Competence-damaged protein SHALO_RS01050 PF04452 RNA methyltransferase SHALO_RS01055 PF01197 Ribosomal protein L31 SHALO_RS01060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_RS01065 PF00588 SpoU rRNA Methylase family SHALO_RS01065 PF08032 RNA 2'-O ribose methyltransferase substrate binding SHALO_RS01080 PF00155 Aminotransferase class I and II SHALO_RS01085 PF00742 Homoserine dehydrogenase SHALO_RS01085 PF01842 ACT domain SHALO_RS01085 PF03447 Homoserine dehydrogenase, NAD binding domain SHALO_RS01090 PF02021 Uncharacterised protein family UPF0102 SHALO_RS01095 PF00085 Thioredoxin SHALO_RS01100 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_RS01105 PF05173 Dihydrodipicolinate reductase, C-terminus SHALO_RS01105 PF01113 Dihydrodipicolinate reductase, N-terminus SHALO_RS01110 PF00156 Phosphoribosyl transferase domain SHALO_RS01115 PF16199 Radical_SAM C-terminal domain SHALO_RS01115 PF04055 Radical SAM superfamily SHALO_RS01130 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SHALO_RS01130 PF01502 Phosphoribosyl-AMP cyclohydrolase SHALO_RS01140 PF01063 Amino-transferase class IV SHALO_RS01145 PF00171 Aldehyde dehydrogenase family SHALO_RS01150 PF00578 AhpC/TSA family SHALO_RS01160 PF02677 Epoxyqueuosine reductase QueH SHALO_RS01165 PF07977 FabA-like domain SHALO_RS01170 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SHALO_RS01170 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_RS01175 PF06689 ClpX C4-type zinc finger SHALO_RS01175 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_RS01175 PF07724 AAA domain (Cdc48 subfamily) SHALO_RS01190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_RS01190 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SHALO_RS01190 PF02142 MGS-like domain SHALO_RS01220 PF00899 ThiF family SHALO_RS01225 PF01975 Survival protein SurE SHALO_RS01230 PF02684 Lipid-A-disaccharide synthetase SHALO_RS01235 PF01272 Transcription elongation factor, GreA/GreB, C-term SHALO_RS01235 PF03449 Transcription elongation factor, N-terminal SHALO_RS01240 PF02774 Semialdehyde dehydrogenase, dimerisation domain SHALO_RS01240 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_RS01250 PF00072 Response regulator receiver domain SHALO_RS01250 PF01584 CheW-like domain SHALO_RS01255 PF01584 CheW-like domain SHALO_RS01255 PF02895 Signal transducing histidine kinase, homodimeric domain SHALO_RS01255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS01255 PF01627 Hpt domain SHALO_RS01255 PF00072 Response regulator receiver domain SHALO_RS01260 PF01584 CheW-like domain SHALO_RS01275 PF00923 Transaldolase/Fructose-6-phosphate aldolase SHALO_RS01280 PF00437 Type II/IV secretion system protein SHALO_RS01285 PF01386 Ribosomal L25p family SHALO_RS01285 PF14693 Ribosomal protein TL5, C-terminal domain SHALO_RS01290 PF01195 Peptidyl-tRNA hydrolase SHALO_RS01300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SHALO_RS01300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SHALO_RS01305 PF01842 ACT domain SHALO_RS01305 PF01817 Chorismate mutase type II SHALO_RS01305 PF00800 Prephenate dehydratase SHALO_RS01310 PF00155 Aminotransferase class I and II SHALO_RS01315 PF01514 Secretory protein of YscJ/FliF family SHALO_RS01315 PF08345 Flagellar M-ring protein C-terminal SHALO_RS01320 PF14841 FliG middle domain SHALO_RS01320 PF14842 FliG N-terminal domain SHALO_RS01320 PF01706 FliG C-terminal domain SHALO_RS01330 PF13359 DDE superfamily endonuclease SHALO_RS01330 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_RS01335 PF13359 DDE superfamily endonuclease SHALO_RS01335 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_RS01345 PF02780 Transketolase, C-terminal domain SHALO_RS01345 PF02779 Transketolase, pyrimidine binding domain SHALO_RS01345 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SHALO_RS01355 PF00578 AhpC/TSA family SHALO_RS01355 PF10417 C-terminal domain of 1-Cys peroxiredoxin SHALO_RS01360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS01360 PF02743 Cache domain SHALO_RS01360 PF00672 HAMP domain SHALO_RS01365 PF00037 4Fe-4S binding domain SHALO_RS01370 PF00334 Nucleoside diphosphate kinase SHALO_RS01380 PF01783 Ribosomal L32p protein family SHALO_RS01385 PF02504 Fatty acid synthesis protein SHALO_RS01390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SHALO_RS01390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SHALO_RS01395 PF02153 Prephenate dehydrogenase SHALO_RS01395 PF01842 ACT domain SHALO_RS01400 PF01103 Surface antigen SHALO_RS01400 PF07244 Surface antigen variable number repeat SHALO_RS01405 PF02541 Ppx/GppA phosphatase family SHALO_RS01410 PF00037 4Fe-4S binding domain SHALO_RS01415 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS01420 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS01420 PF00072 Response regulator receiver domain SHALO_RS01430 PF02660 Glycerol-3-phosphate acyltransferase SHALO_RS01435 PF02445 Quinolinate synthetase A protein SHALO_RS01440 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SHALO_RS01440 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SHALO_RS01445 PF01312 FlhB HrpN YscU SpaS Family SHALO_RS01455 PF01551 Peptidase family M23 SHALO_RS01455 PF01476 LysM domain SHALO_RS01460 PF03775 Septum formation inhibitor MinC, C-terminal domain SHALO_RS01465 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SHALO_RS01475 PF00288 GHMP kinases N terminal domain SHALO_RS01475 PF08544 GHMP kinases C terminal SHALO_RS01485 PF11987 Translation-initiation factor 2 SHALO_RS01485 PF04760 Translation initiation factor IF-2, N-terminal region SHALO_RS01485 PF00009 Elongation factor Tu GTP binding domain SHALO_RS01490 PF02033 Ribosome-binding factor A SHALO_RS01495 PF17384 RimP C-terminal SH3 domain SHALO_RS01495 PF02576 RimP N-terminal domain SHALO_RS01500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SHALO_RS01500 PF01872 RibD C-terminal domain SHALO_RS01510 PF08448 PAS fold SHALO_RS01510 PF08447 PAS fold SHALO_RS01510 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS01510 PF00563 EAL domain SHALO_RS01515 PF00313 'Cold-shock' DNA-binding domain SHALO_RS01520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS01520 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS01520 PF00672 HAMP domain SHALO_RS01520 PF13426 PAS domain SHALO_RS01525 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS01525 PF00072 Response regulator receiver domain SHALO_RS01535 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_RS01555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS01555 PF00384 Molybdopterin oxidoreductase SHALO_RS01555 PF01568 Molydopterin dinucleotide binding domain SHALO_RS01555 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_RS01560 PF13247 4Fe-4S dicluster domain SHALO_RS01565 PF03916 Polysulphide reductase, NrfD SHALO_RS01570 PF00563 EAL domain SHALO_RS01570 PF10442 FIST C domain SHALO_RS01570 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS01570 PF08495 FIST N domain SHALO_RS01575 PF01568 Molydopterin dinucleotide binding domain SHALO_RS01575 PF00384 Molybdopterin oxidoreductase SHALO_RS01575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS01580 PF13247 4Fe-4S dicluster domain SHALO_RS01585 PF03916 Polysulphide reductase, NrfD SHALO_RS01590 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS01590 PF00072 Response regulator receiver domain SHALO_RS01595 PF13426 PAS domain SHALO_RS01595 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS01595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS01595 PF00672 HAMP domain SHALO_RS01605 PF06969 HemN C-terminal domain SHALO_RS01605 PF04055 Radical SAM superfamily SHALO_RS01615 PF01368 DHH family SHALO_RS01615 PF02833 DHHA2 domain SHALO_RS01630 PF01209 ubiE/COQ5 methyltransferase family SHALO_RS01635 PF02601 Exonuclease VII, large subunit SHALO_RS01635 PF13742 OB-fold nucleic acid binding domain SHALO_RS01645 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS01650 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS01650 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS01650 PF00563 EAL domain SHALO_RS01655 PF00962 Adenosine/AMP deaminase SHALO_RS01665 PF12833 Helix-turn-helix domain SHALO_RS01665 PF06719 AraC-type transcriptional regulator N-terminus SHALO_RS01670 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_RS01675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_RS01675 PF03466 LysR substrate binding domain SHALO_RS01680 PF03601 Conserved hypothetical protein 698 SHALO_RS01685 PF00255 Glutathione peroxidase SHALO_RS01700 PF07722 Peptidase C26 SHALO_RS01705 PF00593 TonB dependent receptor SHALO_RS01705 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS01720 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS01725 PF00005 ABC transporter SHALO_RS01755 PF12704 MacB-like periplasmic core domain SHALO_RS01755 PF00005 ABC transporter SHALO_RS01755 PF02687 FtsX-like permease family SHALO_RS01775 PF00005 ABC transporter SHALO_RS01780 PF13237 4Fe-4S dicluster domain SHALO_RS01780 PF12801 4Fe-4S binding domain SHALO_RS01795 PF12838 4Fe-4S dicluster domain SHALO_RS01810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SHALO_RS01810 PF18764 Nitrous oxide reductase propeller repeat SHALO_RS01810 PF18793 Nitrous oxide reductase propeller repeat 2 SHALO_RS01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS01815 PF00989 PAS fold SHALO_RS01815 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS01820 PF00072 Response regulator receiver domain SHALO_RS01820 PF12833 Helix-turn-helix domain SHALO_RS01825 PF00034 Cytochrome c SHALO_RS01830 PF00355 Rieske [2Fe-2S] domain SHALO_RS01830 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_RS01835 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_RS01835 PF00033 Cytochrome b/b6/petB SHALO_RS01870 PF00255 Glutathione peroxidase SHALO_RS01890 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_RS01890 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SHALO_RS01895 PF02163 Peptidase family M50 SHALO_RS01900 PF01979 Amidohydrolase family SHALO_RS01905 PF01220 Dehydroquinase class II SHALO_RS01910 PF00557 Metallopeptidase family M24 SHALO_RS01910 PF01321 Creatinase/Prolidase N-terminal domain SHALO_RS01915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SHALO_RS01920 PF00448 SRP54-type protein, GTPase domain SHALO_RS01925 PF10609 NUBPL iron-transfer P-loop NTPase SHALO_RS01935 PF04545 Sigma-70, region 4 SHALO_RS01935 PF04539 Sigma-70 region 3 SHALO_RS01935 PF04542 Sigma-70 region 2 SHALO_RS01940 PF02154 Flagellar motor switch protein FliM SHALO_RS01940 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SHALO_RS01945 PF04509 CheC-like family SHALO_RS01945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SHALO_RS01950 PF03641 Possible lysine decarboxylase SHALO_RS01960 PF00535 Glycosyl transferase family 2 SHALO_RS01965 PF08889 WbqC-like protein family SHALO_RS01970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_RS01975 PF00892 EamA-like transporter family SHALO_RS01990 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SHALO_RS01990 PF14572 Phosphoribosyl synthetase-associated domain SHALO_RS01995 PF00009 Elongation factor Tu GTP binding domain SHALO_RS01995 PF03144 Elongation factor Tu domain 2 SHALO_RS01995 PF06421 GTP-binding protein LepA C-terminus SHALO_RS01995 PF00679 Elongation factor G C-terminus SHALO_RS02000 PF00156 Phosphoribosyl transferase domain SHALO_RS02015 PF00521 DNA gyrase/topoisomerase IV, subunit A SHALO_RS02015 PF03989 DNA gyrase C-terminal domain, beta-propeller SHALO_RS02030 PF00158 Sigma-54 interaction domain SHALO_RS02030 PF00072 Response regulator receiver domain SHALO_RS02035 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_RS02035 PF02774 Semialdehyde dehydrogenase, dimerisation domain SHALO_RS02045 PF01208 Uroporphyrinogen decarboxylase (URO-D) SHALO_RS02050 PF04055 Radical SAM superfamily SHALO_RS02060 PF16868 NMT1-like family SHALO_RS02070 PF13356 Arm DNA-binding domain SHALO_RS02070 PF00589 Phage integrase family SHALO_RS02075 PF00672 HAMP domain SHALO_RS02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS02075 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS02075 PF13426 PAS domain SHALO_RS02090 PF12161 HsdM N-terminal domain SHALO_RS02090 PF02384 N-6 DNA Methylase SHALO_RS02125 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SHALO_RS02125 PF06594 Haemolysin-type calcium binding protein related domain SHALO_RS02135 PF03412 Peptidase C39 family SHALO_RS02135 PF00005 ABC transporter SHALO_RS02135 PF00664 ABC transporter transmembrane region SHALO_RS02145 PF00239 Resolvase, N terminal domain SHALO_RS02145 PF02796 Helix-turn-helix domain of resolvase SHALO_RS02185 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system SHALO_RS02205 PF00056 lactate/malate dehydrogenase, NAD binding domain SHALO_RS02205 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SHALO_RS02215 PF09364 XFP N-terminal domain SHALO_RS02215 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SHALO_RS02215 PF09363 XFP C-terminal domain SHALO_RS02230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SHALO_RS02235 PF01965 DJ-1/PfpI family SHALO_RS02265 PF00563 EAL domain SHALO_RS02265 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS02265 PF08495 FIST N domain SHALO_RS02265 PF10442 FIST C domain SHALO_RS02280 PF00085 Thioredoxin SHALO_RS02290 PF07286 Protein of unknown function (DUF1445) SHALO_RS02315 PF09905 DNA-binding protein VF530 SHALO_RS02320 PF00106 short chain dehydrogenase SHALO_RS02335 PF13458 Periplasmic binding protein SHALO_RS02340 PF02653 Branched-chain amino acid transport system / permease component SHALO_RS02345 PF11862 Domain of unknown function (DUF3382) SHALO_RS02345 PF02653 Branched-chain amino acid transport system / permease component SHALO_RS02350 PF00005 ABC transporter SHALO_RS02350 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_RS02355 PF00005 ABC transporter SHALO_RS02360 PF00171 Aldehyde dehydrogenase family SHALO_RS02370 PF03883 Peroxide stress protein YaaA SHALO_RS02395 PF03143 Elongation factor Tu C-terminal domain SHALO_RS02395 PF03144 Elongation factor Tu domain 2 SHALO_RS02395 PF00009 Elongation factor Tu GTP binding domain SHALO_RS02400 PF00471 Ribosomal protein L33 SHALO_RS02410 PF02357 Transcription termination factor nusG SHALO_RS02415 PF00298 Ribosomal protein L11, RNA binding domain SHALO_RS02415 PF03946 Ribosomal protein L11, N-terminal domain SHALO_RS02420 PF00687 Ribosomal protein L1p/L10e family SHALO_RS02425 PF00466 Ribosomal protein L10 SHALO_RS02430 PF00542 Ribosomal protein L7/L12 C-terminal domain SHALO_RS02430 PF16320 Ribosomal protein L7/L12 dimerisation domain SHALO_RS02435 PF00562 RNA polymerase Rpb2, domain 6 SHALO_RS02435 PF04560 RNA polymerase Rpb2, domain 7 SHALO_RS02435 PF04561 RNA polymerase Rpb2, domain 2 SHALO_RS02435 PF04563 RNA polymerase beta subunit SHALO_RS02435 PF10385 RNA polymerase beta subunit external 1 domain SHALO_RS02435 PF04565 RNA polymerase Rpb2, domain 3 SHALO_RS02440 PF04983 RNA polymerase Rpb1, domain 3 SHALO_RS02440 PF04997 RNA polymerase Rpb1, domain 1 SHALO_RS02440 PF00623 RNA polymerase Rpb1, domain 2 SHALO_RS02440 PF04998 RNA polymerase Rpb1, domain 5 SHALO_RS02440 PF05000 RNA polymerase Rpb1, domain 4 SHALO_RS02445 PF00164 Ribosomal protein S12/S23 SHALO_RS02450 PF00177 Ribosomal protein S7p/S5e SHALO_RS02455 PF03144 Elongation factor Tu domain 2 SHALO_RS02455 PF00009 Elongation factor Tu GTP binding domain SHALO_RS02455 PF03764 Elongation factor G, domain IV SHALO_RS02455 PF14492 Elongation Factor G, domain II SHALO_RS02455 PF00679 Elongation factor G C-terminus SHALO_RS02460 PF00005 ABC transporter SHALO_RS02460 PF09383 NIL domain SHALO_RS02465 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS02470 PF03180 NLPA lipoprotein SHALO_RS02480 PF01037 Lrp/AsnC ligand binding domain SHALO_RS02485 PF00892 EamA-like transporter family SHALO_RS02500 PF01554 MatE SHALO_RS02505 PF01568 Molydopterin dinucleotide binding domain SHALO_RS02505 PF18364 Molybdopterin oxidoreductase N-terminal domain SHALO_RS02505 PF00384 Molybdopterin oxidoreductase SHALO_RS02515 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS02515 PF00072 Response regulator receiver domain SHALO_RS02520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_RS02525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS02525 PF08447 PAS fold SHALO_RS02525 PF08448 PAS fold SHALO_RS02530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS02530 PF00672 HAMP domain SHALO_RS02530 PF02743 Cache domain SHALO_RS02535 PF08447 PAS fold SHALO_RS02535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS02545 PF00384 Molybdopterin oxidoreductase SHALO_RS02545 PF01568 Molydopterin dinucleotide binding domain SHALO_RS02545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS02545 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_RS02550 PF00146 NADH dehydrogenase SHALO_RS02555 PF12838 4Fe-4S dicluster domain SHALO_RS02560 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SHALO_RS02565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_RS02570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_RS02570 PF00361 Proton-conducting membrane transporter SHALO_RS02575 PF00361 Proton-conducting membrane transporter SHALO_RS02580 PF00361 Proton-conducting membrane transporter SHALO_RS02590 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SHALO_RS02590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SHALO_RS02590 PF10531 SLBB domain SHALO_RS02600 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_RS02600 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_RS02605 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_RS02610 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SHALO_RS02625 PF01168 Alanine racemase, N-terminal domain SHALO_RS02625 PF00842 Alanine racemase, C-terminal domain SHALO_RS02645 PF02527 rRNA small subunit methyltransferase G SHALO_RS02650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SHALO_RS02650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SHALO_RS02655 PF01741 Large-conductance mechanosensitive channel, MscL SHALO_RS02665 PF00925 GTP cyclohydrolase II SHALO_RS02670 PF00490 Delta-aminolevulinic acid dehydratase SHALO_RS02675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SHALO_RS02675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SHALO_RS02680 PF10788 Protein of unknown function (DUF2603) SHALO_RS02685 PF06969 HemN C-terminal domain SHALO_RS02685 PF04055 Radical SAM superfamily SHALO_RS02690 PF02754 Cysteine-rich domain SHALO_RS02715 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SHALO_RS02720 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS02720 PF08448 PAS fold SHALO_RS02725 PF07690 Major Facilitator Superfamily SHALO_RS02730 PF02810 SEC-C motif SHALO_RS02745 PF01790 Prolipoprotein diacylglyceryl transferase SHALO_RS02750 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SHALO_RS02755 PF00890 FAD binding domain SHALO_RS02755 PF02910 Fumarate reductase flavoprotein C-term SHALO_RS02760 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_RS02760 PF13183 4Fe-4S dicluster domain SHALO_RS02765 PF00350 Dynamin family SHALO_RS02770 PF00350 Dynamin family SHALO_RS02780 PF01594 AI-2E family transporter SHALO_RS02785 PF05496 Holliday junction DNA helicase RuvB P-loop domain SHALO_RS02785 PF05491 RuvB C-terminal winged helix domain SHALO_RS02785 PF17864 RuvB AAA lid domain SHALO_RS02790 PF02548 Ketopantoate hydroxymethyltransferase SHALO_RS02800 PF00290 Tryptophan synthase alpha chain SHALO_RS02815 PF00318 Ribosomal protein S2 SHALO_RS02820 PF00889 Elongation factor TS SHALO_RS02825 PF00005 ABC transporter SHALO_RS02830 PF01311 Bacterial export proteins, family 1 SHALO_RS02840 PF00625 Guanylate kinase SHALO_RS02845 PF02416 mttA/Hcf106 family SHALO_RS02850 PF00750 tRNA synthetases class I (R) SHALO_RS02850 PF05746 DALR anticodon binding domain SHALO_RS02850 PF03485 Arginyl tRNA synthetase N terminal domain SHALO_RS02860 PF10442 FIST C domain SHALO_RS02860 PF00563 EAL domain SHALO_RS02860 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS02860 PF08495 FIST N domain SHALO_RS02875 PF01475 Ferric uptake regulator family SHALO_RS02880 PF00034 Cytochrome c SHALO_RS02880 PF03150 Di-haem cytochrome c peroxidase SHALO_RS02885 PF01467 Cytidylyltransferase-like SHALO_RS02890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SHALO_RS02890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SHALO_RS02895 PF00162 Phosphoglycerate kinase SHALO_RS02900 PF00121 Triosephosphate isomerase SHALO_RS02910 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS02915 PF08529 NusA N-terminal domain SHALO_RS02915 PF13184 NusA-like KH domain SHALO_RS02925 PF01938 TRAM domain SHALO_RS02925 PF00919 Uncharacterized protein family UPF0004 SHALO_RS02925 PF04055 Radical SAM superfamily SHALO_RS02950 PF01171 PP-loop family SHALO_RS02955 PF18693 TRAM domain SHALO_RS02955 PF00919 Uncharacterized protein family UPF0004 SHALO_RS02955 PF04055 Radical SAM superfamily SHALO_RS02960 PF02569 Pantoate-beta-alanine ligase SHALO_RS02965 PF00472 RF-1 domain SHALO_RS02965 PF03462 PCRF domain SHALO_RS02990 PF12169 DNA polymerase III subunits gamma and tau domain III SHALO_RS02990 PF12170 DNA polymerase III tau subunit V interacting with alpha SHALO_RS02995 PF07498 Rho termination factor, N-terminal domain SHALO_RS02995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_RS02995 PF07497 Rho termination factor, RNA-binding domain SHALO_RS03000 PF01255 Putative undecaprenyl diphosphate synthase SHALO_RS03005 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS03005 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS03005 PF00563 EAL domain SHALO_RS03010 PF03063 Prismane/CO dehydrogenase family SHALO_RS03030 PF08378 Nuclease-related domain SHALO_RS03035 PF03976 Polyphosphate kinase 2 (PPK2) SHALO_RS03045 PF00355 Rieske [2Fe-2S] domain SHALO_RS03045 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_RS03050 PF00033 Cytochrome b/b6/petB SHALO_RS03050 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_RS03060 PF03653 Uncharacterised protein family (UPF0093) SHALO_RS03065 PF00271 Helicase conserved C-terminal domain SHALO_RS03065 PF00270 DEAD/DEAH box helicase SHALO_RS03070 PF02447 GntP family permease SHALO_RS03075 PF18381 YcaO cyclodehydratase C-terminal domain SHALO_RS03075 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SHALO_RS03080 PF08360 QacR-like protein, C-terminal region SHALO_RS03080 PF00440 Bacterial regulatory proteins, tetR family SHALO_RS03085 PF02321 Outer membrane efflux protein SHALO_RS03095 PF07690 Major Facilitator Superfamily SHALO_RS03100 PF00582 Universal stress protein family SHALO_RS03115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS03115 PF08447 PAS fold SHALO_RS03115 PF08448 PAS fold SHALO_RS03120 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS03120 PF00072 Response regulator receiver domain SHALO_RS03125 PF03480 Bacterial extracellular solute-binding protein, family 7 SHALO_RS03130 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SHALO_RS03135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SHALO_RS03145 PF01934 Protein of unknown function DUF86 SHALO_RS03185 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SHALO_RS03210 PF02653 Branched-chain amino acid transport system / permease component SHALO_RS03215 PF11862 Domain of unknown function (DUF3382) SHALO_RS03215 PF02653 Branched-chain amino acid transport system / permease component SHALO_RS03220 PF00005 ABC transporter SHALO_RS03220 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_RS03225 PF00005 ABC transporter SHALO_RS03230 PF05140 ResB-like family SHALO_RS03230 PF01578 Cytochrome C assembly protein SHALO_RS03270 PF00994 Probable molybdopterin binding domain SHALO_RS03270 PF02464 Competence-damaged protein SHALO_RS03270 PF18146 Damage-inducible protein CinA KH domain SHALO_RS03275 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_RS03275 PF08264 Anticodon-binding domain of tRNA SHALO_RS03280 PF01425 Amidase SHALO_RS03285 PF00571 CBS domain SHALO_RS03285 PF00478 IMP dehydrogenase / GMP reductase domain SHALO_RS03290 PF00561 alpha/beta hydrolase fold SHALO_RS03295 PF02609 Exonuclease VII small subunit SHALO_RS03305 PF00899 ThiF family SHALO_RS03310 PF00155 Aminotransferase class I and II SHALO_RS03315 PF08245 Mur ligase middle domain SHALO_RS03315 PF02875 Mur ligase family, glutamate ligase domain SHALO_RS03315 PF01225 Mur ligase family, catalytic domain SHALO_RS03325 PF01713 Smr domain SHALO_RS03325 PF00488 MutS domain V SHALO_RS03330 PF01546 Peptidase family M20/M25/M40 SHALO_RS03330 PF07687 Peptidase dimerisation domain SHALO_RS03335 PF01042 Endoribonuclease L-PSP SHALO_RS03340 PF06039 Malate:quinone oxidoreductase (Mqo) SHALO_RS03355 PF00583 Acetyltransferase (GNAT) family SHALO_RS03360 PF03572 Peptidase family S41 SHALO_RS03360 PF00595 PDZ domain SHALO_RS03370 PF02887 Pyruvate kinase, alpha/beta domain SHALO_RS03370 PF00224 Pyruvate kinase, barrel domain SHALO_RS03370 PF00391 PEP-utilising enzyme, mobile domain SHALO_RS03375 PF00829 Ribosomal prokaryotic L21 protein SHALO_RS03380 PF01016 Ribosomal L27 protein SHALO_RS03385 PF01018 GTP1/OBG SHALO_RS03385 PF01926 50S ribosome-binding GTPase SHALO_RS03390 PF00696 Amino acid kinase family SHALO_RS03395 PF02911 Formyl transferase, C-terminal domain SHALO_RS03395 PF00551 Formyl transferase SHALO_RS03405 PF13614 AAA domain SHALO_RS03410 PF17762 HTH domain found in ParB protein SHALO_RS03410 PF02195 ParB-like nuclease domain SHALO_RS03420 PF00430 ATP synthase B/B' CF(0) SHALO_RS03425 PF00213 ATP synthase delta (OSCP) subunit SHALO_RS03430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_RS03430 PF02874 ATP synthase alpha/beta family, beta-barrel domain SHALO_RS03430 PF00306 ATP synthase alpha/beta chain, C terminal domain SHALO_RS03435 PF00231 ATP synthase SHALO_RS03440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_RS03440 PF02874 ATP synthase alpha/beta family, beta-barrel domain SHALO_RS03445 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SHALO_RS03450 PF01618 MotA/TolQ/ExbB proton channel family SHALO_RS03455 PF02472 Biopolymer transport protein ExbD/TolR SHALO_RS03465 PF04052 TolB amino-terminal domain SHALO_RS03470 PF01389 OmpA-like transmembrane domain SHALO_RS03470 PF00691 OmpA family SHALO_RS03480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_RS03485 PF02954 Bacterial regulatory protein, Fis family SHALO_RS03485 PF00072 Response regulator receiver domain SHALO_RS03485 PF00158 Sigma-54 interaction domain SHALO_RS03490 PF00698 Acyl transferase domain SHALO_RS03495 PF01048 Phosphorylase superfamily SHALO_RS03500 PF01171 PP-loop family SHALO_RS03510 PF01645 Conserved region in glutamate synthase SHALO_RS03510 PF01493 GXGXG motif SHALO_RS03510 PF00310 Glutamine amidotransferases class-II SHALO_RS03510 PF04898 Glutamate synthase central domain SHALO_RS03515 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_RS03515 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_RS03525 PF01039 Carboxyl transferase domain SHALO_RS03525 PF17848 Acetyl-coA carboxylase zinc finger domain SHALO_RS03530 PF02590 Predicted SPOUT methyltransferase SHALO_RS03535 PF01258 Prokaryotic dksA/traR C4-type zinc finger SHALO_RS03545 PF01207 Dihydrouridine synthase (Dus) SHALO_RS03565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SHALO_RS03565 PF04509 CheC-like family SHALO_RS03580 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_RS03590 PF01243 Pyridoxamine 5'-phosphate oxidase SHALO_RS03595 PF04229 GrpB protein SHALO_RS03600 PF00583 Acetyltransferase (GNAT) family SHALO_RS03610 PF13667 ThiC-associated domain SHALO_RS03610 PF01964 Radical SAM ThiC family SHALO_RS03620 PF00324 Amino acid permease SHALO_RS03625 PF01925 Sulfite exporter TauE/SafE SHALO_RS03630 PF17760 UvrA interaction domain SHALO_RS03630 PF00005 ABC transporter SHALO_RS03630 PF17755 UvrA DNA-binding domain SHALO_RS03635 PF00375 Sodium:dicarboxylate symporter family SHALO_RS03640 PF00375 Sodium:dicarboxylate symporter family SHALO_RS03650 PF00476 DNA polymerase family A SHALO_RS03650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SHALO_RS03650 PF01367 5'-3' exonuclease, C-terminal SAM fold SHALO_RS03655 PF02659 Putative manganese efflux pump SHALO_RS03665 PF01556 DnaJ C terminal domain SHALO_RS03665 PF00684 DnaJ central domain SHALO_RS03665 PF00226 DnaJ domain SHALO_RS03690 PF01654 Cytochrome bd terminal oxidase subunit I SHALO_RS03695 PF02322 Cytochrome bd terminal oxidase subunit II SHALO_RS03700 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS03700 PF00072 Response regulator receiver domain SHALO_RS03710 PF13662 Toprim domain SHALO_RS03710 PF02132 RecR protein SHALO_RS03715 PF00563 EAL domain SHALO_RS03715 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS03715 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS03725 PF00501 AMP-binding enzyme SHALO_RS03725 PF13193 AMP-binding enzyme C-terminal domain SHALO_RS03730 PF08501 Shikimate dehydrogenase substrate binding domain SHALO_RS03735 PF04715 Anthranilate synthase component I, N terminal region SHALO_RS03735 PF00425 chorismate binding enzyme SHALO_RS03750 PF00464 Serine hydroxymethyltransferase SHALO_RS03755 PF01336 OB-fold nucleic acid binding domain SHALO_RS03755 PF00152 tRNA synthetases class II (D, K and N) SHALO_RS03760 PF01475 Ferric uptake regulator family SHALO_RS03770 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS03775 PF00437 Type II/IV secretion system protein SHALO_RS03780 PF02686 Glu-tRNAGln amidotransferase C subunit SHALO_RS03790 PF15437 Plasminogen-binding protein pgbA C-terminal SHALO_RS03800 PF03309 Type III pantothenate kinase SHALO_RS03805 PF01634 ATP phosphoribosyltransferase SHALO_RS03810 PF00072 Response regulator receiver domain SHALO_RS03815 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS03815 PF00072 Response regulator receiver domain SHALO_RS03815 PF00672 HAMP domain SHALO_RS03815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SHALO_RS03815 PF01627 Hpt domain SHALO_RS03830 PF08459 UvrC Helix-hairpin-helix N-terminal SHALO_RS03830 PF02151 UvrB/uvrC motif SHALO_RS03830 PF01541 GIY-YIG catalytic domain SHALO_RS03840 PF00890 FAD binding domain SHALO_RS03845 PF03600 Citrate transporter SHALO_RS03850 PF02540 NAD synthase SHALO_RS03850 PF00958 GMP synthase C terminal domain SHALO_RS03850 PF00117 Glutamine amidotransferase class-I SHALO_RS03860 PF02844 Phosphoribosylglycinamide synthetase, N domain SHALO_RS03860 PF02843 Phosphoribosylglycinamide synthetase, C domain SHALO_RS03860 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SHALO_RS03875 PF01138 3' exoribonuclease family, domain 1 SHALO_RS03875 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SHALO_RS03875 PF00013 KH domain SHALO_RS03875 PF00575 S1 RNA binding domain SHALO_RS03875 PF03725 3' exoribonuclease family, domain 2 SHALO_RS03880 PF00137 ATP synthase subunit C SHALO_RS03920 PF00263 Bacterial type II and III secretion system protein SHALO_RS03920 PF03958 Bacterial type II/III secretion system short domain SHALO_RS03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS03965 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS03965 PF08448 PAS fold SHALO_RS03965 PF13426 PAS domain SHALO_RS03965 PF00072 Response regulator receiver domain SHALO_RS03970 PF00072 Response regulator receiver domain SHALO_RS03970 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS03980 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SHALO_RS03985 PF02913 FAD linked oxidases, C-terminal domain SHALO_RS03985 PF01565 FAD binding domain SHALO_RS03995 PF00364 Biotin-requiring enzyme SHALO_RS04000 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SHALO_RS04005 PF01293 Phosphoenolpyruvate carboxykinase SHALO_RS04010 PF14698 Argininosuccinate lyase C-terminal SHALO_RS04010 PF00206 Lyase SHALO_RS04015 PF01230 HIT domain SHALO_RS04020 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SHALO_RS04020 PF01409 tRNA synthetases class II core domain (F) SHALO_RS04025 PF01588 Putative tRNA binding domain SHALO_RS04025 PF03147 Ferredoxin-fold anticodon binding domain SHALO_RS04025 PF03484 tRNA synthetase B5 domain SHALO_RS04025 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SHALO_RS04030 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SHALO_RS04035 PF02401 LytB protein SHALO_RS04040 PF00575 S1 RNA binding domain SHALO_RS04050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_RS04050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_RS04050 PF01842 ACT domain SHALO_RS04060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS04065 PF00873 AcrB/AcrD/AcrF family SHALO_RS04070 PF00873 AcrB/AcrD/AcrF family SHALO_RS04080 PF08207 Elongation factor P (EF-P) KOW-like domain SHALO_RS04080 PF09285 Elongation factor P, C-terminal SHALO_RS04080 PF01132 Elongation factor P (EF-P) OB domain SHALO_RS04085 PF01965 DJ-1/PfpI family SHALO_RS04090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04095 PF01624 MutS domain I SHALO_RS04095 PF05188 MutS domain II SHALO_RS04095 PF05192 MutS domain III SHALO_RS04095 PF05190 MutS family domain IV SHALO_RS04095 PF00488 MutS domain V SHALO_RS04125 PF00563 EAL domain SHALO_RS04125 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS04125 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS04130 PF03653 Uncharacterised protein family (UPF0093) SHALO_RS04150 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS04150 PF10442 FIST C domain SHALO_RS04150 PF00563 EAL domain SHALO_RS04150 PF08495 FIST N domain SHALO_RS04160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SHALO_RS04165 PF02321 Outer membrane efflux protein SHALO_RS04175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS04180 PF08447 PAS fold SHALO_RS04180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04185 PF17200 Single Cache domain 2 SHALO_RS04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04185 PF00672 HAMP domain SHALO_RS04185 PF17200 Single Cache domain 2 SHALO_RS04185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04185 PF00672 HAMP domain SHALO_RS04195 PF07733 Bacterial DNA polymerase III alpha NTPase domain SHALO_RS04195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SHALO_RS04195 PF14579 Helix-hairpin-helix motif SHALO_RS04195 PF02811 PHP domain SHALO_RS04205 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS04205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS04215 PF02386 Cation transport protein SHALO_RS04220 PF02254 TrkA-N domain SHALO_RS04220 PF02080 TrkA-C domain SHALO_RS04235 PF01098 Cell cycle protein SHALO_RS04240 PF01479 S4 domain SHALO_RS04240 PF00849 RNA pseudouridylate synthase SHALO_RS04250 PF02390 Putative methyltransferase SHALO_RS04255 PF09383 NIL domain SHALO_RS04255 PF00005 ABC transporter SHALO_RS04270 PF00696 Amino acid kinase family SHALO_RS04275 PF01192 RNA polymerase Rpb6 SHALO_RS04280 PF04607 Region found in RelA / SpoT proteins SHALO_RS04280 PF02824 TGS domain SHALO_RS04280 PF13291 ACT domain SHALO_RS04285 PF01479 S4 domain SHALO_RS04285 PF00579 tRNA synthetases class I (W and Y) SHALO_RS04290 PF03060 Nitronate monooxygenase SHALO_RS04295 PF01520 N-acetylmuramoyl-L-alanine amidase SHALO_RS04310 PF00152 tRNA synthetases class II (D, K and N) SHALO_RS04310 PF02938 GAD domain SHALO_RS04310 PF01336 OB-fold nucleic acid binding domain SHALO_RS04315 PF00072 Response regulator receiver domain SHALO_RS04315 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS04325 PF01513 ATP-NAD kinase SHALO_RS04330 PF13476 AAA domain SHALO_RS04335 PF02652 L-lactate permease SHALO_RS04340 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS04345 PF01026 TatD related DNase SHALO_RS04350 PF01476 LysM domain SHALO_RS04350 PF05257 CHAP domain SHALO_RS04355 PF03330 Lytic transglycolase SHALO_RS04355 PF05036 Sporulation related domain SHALO_RS04360 PF00475 Imidazoleglycerol-phosphate dehydratase SHALO_RS04380 PF01926 50S ribosome-binding GTPase SHALO_RS04395 PF03717 Penicillin-binding Protein dimerisation domain SHALO_RS04395 PF00905 Penicillin binding protein transpeptidase domain SHALO_RS04405 PF02130 Uncharacterized protein family UPF0054 SHALO_RS04415 PF09334 tRNA synthetases class I (M) SHALO_RS04415 PF01588 Putative tRNA binding domain SHALO_RS04415 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_RS04425 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SHALO_RS04450 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_RS04455 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SHALO_RS04455 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_RS04470 PF00072 Response regulator receiver domain SHALO_RS04470 PF00196 Bacterial regulatory proteins, luxR family SHALO_RS04475 PF00939 Sodium:sulfate symporter transmembrane region SHALO_RS04480 PF00989 PAS fold SHALO_RS04480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS04480 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS04485 PF02743 Cache domain SHALO_RS04485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04485 PF00672 HAMP domain SHALO_RS04495 PF04397 LytTr DNA-binding domain SHALO_RS04495 PF00072 Response regulator receiver domain SHALO_RS04500 PF13426 PAS domain SHALO_RS04500 PF07568 Histidine kinase SHALO_RS04500 PF13581 Histidine kinase-like ATPase domain SHALO_RS04510 PF03466 LysR substrate binding domain SHALO_RS04510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_RS04515 PF00890 FAD binding domain SHALO_RS04515 PF02910 Fumarate reductase flavoprotein C-term SHALO_RS04520 PF13183 4Fe-4S dicluster domain SHALO_RS04520 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_RS04525 PF02754 Cysteine-rich domain SHALO_RS04535 PF00672 HAMP domain SHALO_RS04535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04550 PF03264 NapC/NirT cytochrome c family, N-terminal region SHALO_RS04555 PF02335 Cytochrome c552 SHALO_RS04560 PF01578 Cytochrome C assembly protein SHALO_RS04560 PF05140 ResB-like family SHALO_RS04580 PF06821 Serine hydrolase SHALO_RS04590 PF00072 Response regulator receiver domain SHALO_RS04590 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS04610 PF00239 Resolvase, N terminal domain SHALO_RS04610 PF02796 Helix-turn-helix domain of resolvase SHALO_RS04615 PF04172 LrgB-like family SHALO_RS04635 PF01636 Phosphotransferase enzyme family SHALO_RS04645 PF09335 SNARE associated Golgi protein SHALO_RS04655 PF09335 SNARE associated Golgi protein SHALO_RS04660 PF13847 Methyltransferase domain SHALO_RS04665 PF00892 EamA-like transporter family SHALO_RS04670 PF00037 4Fe-4S binding domain SHALO_RS04675 PF12833 Helix-turn-helix domain SHALO_RS04690 PF10114 Sensory domain found in PocR SHALO_RS04690 PF12833 Helix-turn-helix domain SHALO_RS04710 PF01411 tRNA synthetases class II (A) SHALO_RS04710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_RS04710 PF02272 DHHA1 domain SHALO_RS04725 PF01040 UbiA prenyltransferase family SHALO_RS04730 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SHALO_RS04730 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SHALO_RS04740 PF00510 Cytochrome c oxidase subunit III SHALO_RS04745 PF00510 Cytochrome c oxidase subunit III SHALO_RS04745 PF00115 Cytochrome C and Quinol oxidase polypeptide I SHALO_RS04770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS04770 PF01568 Molydopterin dinucleotide binding domain SHALO_RS04770 PF00384 Molybdopterin oxidoreductase SHALO_RS04770 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_RS04775 PF12800 4Fe-4S binding domain SHALO_RS04775 PF12838 4Fe-4S dicluster domain SHALO_RS04780 PF12801 4Fe-4S binding domain SHALO_RS04780 PF00037 4Fe-4S binding domain SHALO_RS04785 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SHALO_RS04790 PF12800 4Fe-4S binding domain SHALO_RS04790 PF13187 4Fe-4S dicluster domain SHALO_RS04790 PF00037 4Fe-4S binding domain SHALO_RS04805 PF08447 PAS fold SHALO_RS04805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04810 PF06071 Protein of unknown function (DUF933) SHALO_RS04810 PF01926 50S ribosome-binding GTPase SHALO_RS04830 PF00593 TonB dependent receptor SHALO_RS04830 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS04840 PF04542 Sigma-70 region 2 SHALO_RS04840 PF08281 Sigma-70, region 4 SHALO_RS04855 PF01568 Molydopterin dinucleotide binding domain SHALO_RS04855 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS04855 PF00384 Molybdopterin oxidoreductase SHALO_RS04870 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS04870 PF00072 Response regulator receiver domain SHALO_RS04880 PF08447 PAS fold SHALO_RS04880 PF08448 PAS fold SHALO_RS04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS04885 PF00034 Cytochrome c SHALO_RS04890 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_RS04890 PF00355 Rieske [2Fe-2S] domain SHALO_RS04895 PF00033 Cytochrome b/b6/petB SHALO_RS04895 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_RS04905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04905 PF08447 PAS fold SHALO_RS04905 PF13426 PAS domain SHALO_RS04915 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS04915 PF08495 FIST N domain SHALO_RS04915 PF10442 FIST C domain SHALO_RS04915 PF00563 EAL domain SHALO_RS04920 PF02666 Phosphatidylserine decarboxylase SHALO_RS04925 PF03880 DbpA RNA binding domain SHALO_RS04925 PF00271 Helicase conserved C-terminal domain SHALO_RS04925 PF00270 DEAD/DEAH box helicase SHALO_RS04935 PF13309 HTH domain SHALO_RS04935 PF08348 YheO-like PAS domain SHALO_RS04940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SHALO_RS04940 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SHALO_RS04950 PF08502 LeuA allosteric (dimerisation) domain SHALO_RS04950 PF00682 HMGL-like SHALO_RS04955 PF01209 ubiE/COQ5 methyltransferase family SHALO_RS04960 PF01810 LysE type translocator SHALO_RS04965 PF11849 Domain of unknown function (DUF3369) SHALO_RS04970 PF12729 Four helix bundle sensory module for signal transduction SHALO_RS04970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS04970 PF00672 HAMP domain SHALO_RS04985 PF00672 HAMP domain SHALO_RS04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS04985 PF07730 Histidine kinase SHALO_RS04990 PF00072 Response regulator receiver domain SHALO_RS04990 PF00196 Bacterial regulatory proteins, luxR family SHALO_RS04995 PF00753 Metallo-beta-lactamase superfamily SHALO_RS04995 PF14864 Alkyl sulfatase C-terminal SHALO_RS04995 PF14863 Alkyl sulfatase dimerisation SHALO_RS05000 PF02525 Flavodoxin-like fold SHALO_RS05010 PF01709 Transcriptional regulator SHALO_RS05020 PF16868 NMT1-like family SHALO_RS05035 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_RS05035 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SHALO_RS05045 PF00118 TCP-1/cpn60 chaperonin family SHALO_RS05050 PF00166 Chaperonin 10 Kd subunit SHALO_RS05060 PF00589 Phage integrase family SHALO_RS05060 PF02899 Phage integrase, N-terminal SAM-like domain SHALO_RS05110 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_RS05110 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_RS05110 PF17871 AAA lid domain SHALO_RS05110 PF07724 AAA domain (Cdc48 subfamily) SHALO_RS05205 PF05981 CreA protein SHALO_RS05210 PF00563 EAL domain SHALO_RS05210 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS05210 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS05220 PF00072 Response regulator receiver domain SHALO_RS05220 PF12833 Helix-turn-helix domain SHALO_RS05225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS05225 PF13188 PAS domain SHALO_RS05225 PF13426 PAS domain SHALO_RS05245 PF00005 ABC transporter SHALO_RS05245 PF00664 ABC transporter transmembrane region SHALO_RS05245 PF03412 Peptidase C39 family SHALO_RS05255 PF00072 Response regulator receiver domain SHALO_RS05255 PF00196 Bacterial regulatory proteins, luxR family SHALO_RS05275 PF04174 A circularly permuted ATPgrasp SHALO_RS05280 PF01841 Transglutaminase-like superfamily SHALO_RS05280 PF08379 Bacterial transglutaminase-like N-terminal region SHALO_RS05290 PF01381 Helix-turn-helix SHALO_RS05310 PF08379 Bacterial transglutaminase-like N-terminal region SHALO_RS05310 PF01841 Transglutaminase-like superfamily SHALO_RS05320 PF14403 Circularly permuted ATP-grasp type 2 SHALO_RS05335 PF06738 Putative threonine/serine exporter SHALO_RS05340 PF12821 Threonine/Serine exporter, ThrE SHALO_RS05340 PF06738 Putative threonine/serine exporter SHALO_RS05345 PF01814 Hemerythrin HHE cation binding domain SHALO_RS05350 PF00403 Heavy-metal-associated domain SHALO_RS05355 PF01022 Bacterial regulatory protein, arsR family SHALO_RS05370 PF00464 Serine hydroxymethyltransferase SHALO_RS05375 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SHALO_RS05375 PF12833 Helix-turn-helix domain SHALO_RS05375 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SHALO_RS05375 PF02805 Metal binding domain of Ada SHALO_RS05380 PF12833 Helix-turn-helix domain SHALO_RS05380 PF02311 AraC-like ligand binding domain SHALO_RS05385 PF02627 Carboxymuconolactone decarboxylase family SHALO_RS05395 PF17202 Single cache domain 3 SHALO_RS05395 PF00672 HAMP domain SHALO_RS05395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS05400 PF00672 HAMP domain SHALO_RS05400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS05400 PF02743 Cache domain SHALO_RS05405 PF02581 Thiamine monophosphate synthase SHALO_RS05420 PF03006 Haemolysin-III related SHALO_RS05430 PF01810 LysE type translocator SHALO_RS05435 PF02754 Cysteine-rich domain SHALO_RS05440 PF13183 4Fe-4S dicluster domain SHALO_RS05440 PF02589 LUD domain SHALO_RS05440 PF11870 Domain of unknown function (DUF3390) SHALO_RS05445 PF02589 LUD domain SHALO_RS05450 PF00892 EamA-like transporter family SHALO_RS05470 PF02811 PHP domain SHALO_RS05470 PF07733 Bacterial DNA polymerase III alpha NTPase domain SHALO_RS05470 PF11490 DNA polymerase III polC-type N-terminus II SHALO_RS05470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SHALO_RS05470 PF00929 Exonuclease SHALO_RS05470 PF14579 Helix-hairpin-helix motif SHALO_RS05480 PF01717 Cobalamin-independent synthase, Catalytic domain SHALO_RS05480 PF08267 Cobalamin-independent synthase, N-terminal domain SHALO_RS05490 PF01435 Peptidase family M48 SHALO_RS05510 PF01739 CheR methyltransferase, SAM binding domain SHALO_RS05515 PF00072 Response regulator receiver domain SHALO_RS05515 PF01339 CheB methylesterase SHALO_RS05520 PF02789 Cytosol aminopeptidase family, N-terminal domain SHALO_RS05520 PF00883 Cytosol aminopeptidase family, catalytic domain SHALO_RS05525 PF09335 SNARE associated Golgi protein SHALO_RS05530 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_RS05535 PF00156 Phosphoribosyl transferase domain SHALO_RS05545 PF02502 Ribose/Galactose Isomerase SHALO_RS05550 PF02163 Peptidase family M50 SHALO_RS05555 PF10502 Signal peptidase, peptidase S26 SHALO_RS05560 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SHALO_RS05560 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHALO_RS05570 PF00202 Aminotransferase class-III SHALO_RS05585 PF04055 Radical SAM superfamily SHALO_RS05590 PF05193 Peptidase M16 inactive domain SHALO_RS05595 PF04851 Type III restriction enzyme, res subunit SHALO_RS05595 PF00271 Helicase conserved C-terminal domain SHALO_RS05625 PF02623 FliW protein SHALO_RS05630 PF13525 Outer membrane lipoprotein SHALO_RS05635 PF02190 ATP-dependent protease La (LON) substrate-binding domain SHALO_RS05635 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_RS05635 PF05362 Lon protease (S16) C-terminal proteolytic domain SHALO_RS05640 PF01084 Ribosomal protein S18 SHALO_RS05645 PF00436 Single-strand binding protein family SHALO_RS05650 PF01250 Ribosomal protein S6 SHALO_RS05655 PF06144 DNA polymerase III, delta subunit SHALO_RS05660 PF00773 RNB domain SHALO_RS05670 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SHALO_RS05670 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SHALO_RS05675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SHALO_RS05680 PF03776 Septum formation topological specificity factor MinE SHALO_RS05695 PF01925 Sulfite exporter TauE/SafE SHALO_RS05700 PF04073 Aminoacyl-tRNA editing domain SHALO_RS05715 PF03315 Serine dehydratase beta chain SHALO_RS05715 PF03313 Serine dehydratase alpha chain SHALO_RS05720 PF03652 Holliday junction resolvase SHALO_RS05725 PF03458 UPF0126 domain SHALO_RS05730 PF00202 Aminotransferase class-III SHALO_RS05740 PF02597 ThiS family SHALO_RS05740 PF05690 Thiazole biosynthesis protein ThiG SHALO_RS05745 PF01648 4'-phosphopantetheinyl transferase superfamily SHALO_RS05750 PF03748 Flagellar basal body-associated protein FliL SHALO_RS05755 PF18073 Rubredoxin metal binding domain SHALO_RS05760 PF00448 SRP54-type protein, GTPase domain SHALO_RS05765 PF00578 AhpC/TSA family SHALO_RS05775 PF12072 Domain of unknown function (DUF3552) SHALO_RS05775 PF00013 KH domain SHALO_RS05775 PF01966 HD domain SHALO_RS05780 PF00664 ABC transporter transmembrane region SHALO_RS05780 PF00005 ABC transporter SHALO_RS05790 PF09335 SNARE associated Golgi protein SHALO_RS05800 PF01758 Sodium Bile acid symporter family SHALO_RS05805 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SHALO_RS05815 PF12833 Helix-turn-helix domain SHALO_RS05815 PF00072 Response regulator receiver domain SHALO_RS05820 PF00072 Response regulator receiver domain SHALO_RS05820 PF01966 HD domain SHALO_RS05825 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS05825 PF00563 EAL domain SHALO_RS05825 PF08448 PAS fold SHALO_RS05830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS05830 PF08448 PAS fold SHALO_RS05830 PF08447 PAS fold SHALO_RS05835 PF08447 PAS fold SHALO_RS05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS05835 PF08448 PAS fold SHALO_RS05845 PF04073 Aminoacyl-tRNA editing domain SHALO_RS05910 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_RS05910 PF00925 GTP cyclohydrolase II SHALO_RS05915 PF02254 TrkA-N domain SHALO_RS05915 PF00999 Sodium/hydrogen exchanger family SHALO_RS05920 PF00672 HAMP domain SHALO_RS05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS05920 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS05925 PF00149 Calcineurin-like phosphoesterase SHALO_RS05930 PF04264 YceI-like domain SHALO_RS05945 PF00005 ABC transporter SHALO_RS05960 PF00183 Hsp90 protein SHALO_RS05965 PF00872 Transposase, Mutator family SHALO_RS05990 PF01327 Polypeptide deformylase SHALO_RS05995 PF03061 Thioesterase superfamily SHALO_RS06005 PF03167 Uracil DNA glycosylase superfamily SHALO_RS06020 PF00682 HMGL-like SHALO_RS06025 PF04055 Radical SAM superfamily SHALO_RS06025 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_RS06030 PF00072 Response regulator receiver domain SHALO_RS06030 PF01966 HD domain SHALO_RS06035 PF00072 Response regulator receiver domain SHALO_RS06035 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS06040 PF00563 EAL domain SHALO_RS06040 PF08495 FIST N domain SHALO_RS06040 PF10442 FIST C domain SHALO_RS06040 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS06045 PF08448 PAS fold SHALO_RS06045 PF08447 PAS fold SHALO_RS06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS06050 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS06050 PF00072 Response regulator receiver domain SHALO_RS06055 PF00753 Metallo-beta-lactamase superfamily SHALO_RS06055 PF00258 Flavodoxin SHALO_RS06060 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_RS06070 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_RS06075 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_RS06080 PF02574 Homocysteine S-methyltransferase SHALO_RS06085 PF00171 Aldehyde dehydrogenase family SHALO_RS06090 PF12795 Mechanosensitive ion channel porin domain SHALO_RS06090 PF00924 Mechanosensitive ion channel SHALO_RS06090 PF12794 Mechanosensitive ion channel inner membrane domain 1 SHALO_RS06105 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_RS06110 PF03270 Protein of unknown function, DUF269 SHALO_RS06120 PF03206 Nitrogen fixation protein NifW SHALO_RS06125 PF04319 NifZ domain SHALO_RS06135 PF00111 2Fe-2S iron-sulfur cluster binding domain SHALO_RS06140 PF00309 Sigma-54 factor, Activator interacting domain (AID) SHALO_RS06140 PF04963 Sigma-54 factor, core binding domain SHALO_RS06140 PF04552 Sigma-54, DNA binding domain SHALO_RS06195 PF00905 Penicillin binding protein transpeptidase domain SHALO_RS06200 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS06200 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS06200 PF00563 EAL domain SHALO_RS06225 PF01863 Protein of unknown function DUF45 SHALO_RS06240 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SHALO_RS06250 PF02567 Phenazine biosynthesis-like protein SHALO_RS06270 PF00561 alpha/beta hydrolase fold SHALO_RS06280 PF13536 Putative multidrug resistance efflux transporter SHALO_RS06290 PF17158 Membrane-associated sensor, integral membrane domain SHALO_RS06290 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS06295 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS06295 PF17158 Membrane-associated sensor, integral membrane domain SHALO_RS06300 PF00392 Bacterial regulatory proteins, gntR family SHALO_RS06300 PF00155 Aminotransferase class I and II SHALO_RS06320 PF01063 Amino-transferase class IV SHALO_RS06340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS06340 PF00672 HAMP domain SHALO_RS06345 PF01568 Molydopterin dinucleotide binding domain SHALO_RS06345 PF00384 Molybdopterin oxidoreductase SHALO_RS06345 PF18364 Molybdopterin oxidoreductase N-terminal domain SHALO_RS06355 PF08447 PAS fold SHALO_RS06355 PF08448 PAS fold SHALO_RS06355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS06360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_RS06365 PF00072 Response regulator receiver domain SHALO_RS06365 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS06385 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SHALO_RS06395 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_RS06400 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_RS06400 PF11844 Domain of unknown function (DUF3364) SHALO_RS06410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS06415 PF00072 Response regulator receiver domain SHALO_RS06415 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS06425 PF04397 LytTr DNA-binding domain SHALO_RS06425 PF00072 Response regulator receiver domain SHALO_RS06430 PF05199 GMC oxidoreductase SHALO_RS06430 PF00732 GMC oxidoreductase SHALO_RS06450 PF00072 Response regulator receiver domain SHALO_RS06450 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS06455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS06460 PF00795 Carbon-nitrogen hydrolase SHALO_RS06460 PF00583 Acetyltransferase (GNAT) family SHALO_RS06490 PF00072 Response regulator receiver domain SHALO_RS06490 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS06495 PF08448 PAS fold SHALO_RS06495 PF08447 PAS fold SHALO_RS06495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS06505 PF00672 HAMP domain SHALO_RS06505 PF17202 Single cache domain 3 SHALO_RS06505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS06510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_RS06510 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_RS06515 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SHALO_RS06520 PF13247 4Fe-4S dicluster domain SHALO_RS06525 PF00374 Nickel-dependent hydrogenase SHALO_RS06525 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_RS06530 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_RS06540 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_RS06555 PF05977 Transmembrane secretion effector SHALO_RS06570 PF02589 LUD domain SHALO_RS06575 PF13183 4Fe-4S dicluster domain SHALO_RS06575 PF11870 Domain of unknown function (DUF3390) SHALO_RS06575 PF02589 LUD domain SHALO_RS06580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_RS06585 PF00155 Aminotransferase class I and II SHALO_RS06590 PF07683 Cobalamin synthesis protein cobW C-terminal domain SHALO_RS06590 PF02492 CobW/HypB/UreG, nucleotide-binding domain SHALO_RS06595 PF04328 Selenoprotein, putative SHALO_RS06600 PF02554 Carbon starvation protein CstA SHALO_RS06600 PF13722 5TM C-terminal transporter carbon starvation CstA SHALO_RS06610 PF00890 FAD binding domain SHALO_RS06610 PF02910 Fumarate reductase flavoprotein C-term SHALO_RS06615 PF06988 NifT/FixU protein SHALO_RS06620 PF00158 Sigma-54 interaction domain SHALO_RS06620 PF13185 GAF domain SHALO_RS06620 PF02954 Bacterial regulatory protein, Fis family SHALO_RS06645 PF02769 AIR synthase related protein, C-terminal domain SHALO_RS06645 PF00586 AIR synthase related protein, N-terminal domain SHALO_RS06650 PF01142 tRNA pseudouridine synthase D (TruD) SHALO_RS06660 PF00999 Sodium/hydrogen exchanger family SHALO_RS06660 PF02254 TrkA-N domain SHALO_RS06660 PF02080 TrkA-C domain SHALO_RS06665 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS06665 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS06665 PF00563 EAL domain SHALO_RS06675 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS06685 PF08543 Phosphomethylpyrimidine kinase SHALO_RS06695 PF02110 Hydroxyethylthiazole kinase family SHALO_RS06705 PF02535 ZIP Zinc transporter SHALO_RS06715 PF01966 HD domain SHALO_RS06720 PF00672 HAMP domain SHALO_RS06720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS06720 PF02743 Cache domain SHALO_RS06725 PF00753 Metallo-beta-lactamase superfamily SHALO_RS06725 PF12706 Beta-lactamase superfamily domain SHALO_RS06735 PF12848 ABC transporter SHALO_RS06735 PF16326 ABC transporter C-terminal domain SHALO_RS06735 PF00005 ABC transporter SHALO_RS06740 PF13677 Membrane MotB of proton-channel complex MotA/MotB SHALO_RS06740 PF00691 OmpA family SHALO_RS06745 PF01618 MotA/TolQ/ExbB proton channel family SHALO_RS06750 PF08361 MAATS-type transcriptional repressor, C-terminal region SHALO_RS06750 PF00440 Bacterial regulatory proteins, tetR family SHALO_RS06755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS06760 PF00873 AcrB/AcrD/AcrF family SHALO_RS06765 PF02321 Outer membrane efflux protein SHALO_RS06780 PF00881 Nitroreductase family SHALO_RS06785 PF00881 Nitroreductase family SHALO_RS06800 PF00875 DNA photolyase SHALO_RS06800 PF03441 FAD binding domain of DNA photolyase SHALO_RS06815 PF14535 AMP-binding enzyme C-terminal domain SHALO_RS06815 PF00501 AMP-binding enzyme SHALO_RS06825 PF14535 AMP-binding enzyme C-terminal domain SHALO_RS06825 PF00501 AMP-binding enzyme SHALO_RS06840 PF00474 Sodium:solute symporter family SHALO_RS06850 PF02561 Flagellar protein FliS SHALO_RS06855 PF07195 Flagellar hook-associated protein 2 C-terminus SHALO_RS06855 PF02465 Flagellar hook-associated protein 2 N-terminus SHALO_RS06875 PF02119 Flagellar P-ring protein SHALO_RS06895 PF07196 Flagellin hook IN motif SHALO_RS06895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_RS06900 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS06900 PF12911 N-terminal TM domain of oligopeptide transport permease C SHALO_RS06910 PF00916 Sulfate permease family SHALO_RS06910 PF01740 STAS domain SHALO_RS06915 PF01361 Tautomerase enzyme SHALO_RS06920 PF00119 ATP synthase A chain SHALO_RS06935 PF02637 GatB domain SHALO_RS06935 PF02934 GatB/GatE catalytic domain SHALO_RS06940 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SHALO_RS06940 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SHALO_RS06945 PF00933 Glycosyl hydrolase family 3 N terminal domain SHALO_RS06950 PF01979 Amidohydrolase family SHALO_RS06955 PF01416 tRNA pseudouridine synthase SHALO_RS06965 PF01478 Type IV leader peptidase family SHALO_RS06965 PF06750 Bacterial Peptidase A24 N-terminal domain SHALO_RS06975 PF04127 DNA / pantothenate metabolism flavoprotein SHALO_RS06975 PF02441 Flavoprotein SHALO_RS06980 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_RS06980 PF12804 MobA-like NTP transferase domain SHALO_RS06985 PF00813 FliP family SHALO_RS06990 PF01263 Aldose 1-epimerase SHALO_RS06995 PF01638 HxlR-like helix-turn-helix SHALO_RS07000 PF02525 Flavodoxin-like fold SHALO_RS07015 PF13194 Domain of unknown function (DUF4010) SHALO_RS07020 PF08497 Radical SAM N-terminal SHALO_RS07020 PF04055 Radical SAM superfamily SHALO_RS07025 PF00342 Phosphoglucose isomerase SHALO_RS07045 PF00374 Nickel-dependent hydrogenase SHALO_RS07050 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_RS07050 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SHALO_RS07050 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_RS07055 PF00374 Nickel-dependent hydrogenase SHALO_RS07060 PF01292 Prokaryotic cytochrome b561 SHALO_RS07065 PF01750 Hydrogenase maturation protease SHALO_RS07075 PF00708 Acylphosphatase SHALO_RS07075 PF07503 HypF finger SHALO_RS07075 PF01300 Telomere recombination SHALO_RS07075 PF17788 HypF Kae1-like domain SHALO_RS07080 PF08753 NikR C terminal nickel binding domain SHALO_RS07080 PF01402 Ribbon-helix-helix protein, copG family SHALO_RS07085 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS07085 PF00593 TonB dependent receptor SHALO_RS07100 PF02492 CobW/HypB/UreG, nucleotide-binding domain SHALO_RS07105 PF01455 HupF/HypC family SHALO_RS07110 PF01924 Hydrogenase formation hypA family SHALO_RS07115 PF02769 AIR synthase related protein, C-terminal domain SHALO_RS07115 PF00586 AIR synthase related protein, N-terminal domain SHALO_RS07120 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SHALO_RS07125 PF00583 Acetyltransferase (GNAT) family SHALO_RS07130 PF13419 Haloacid dehalogenase-like hydrolase SHALO_RS07145 PF03971 Monomeric isocitrate dehydrogenase SHALO_RS07150 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SHALO_RS07150 PF00056 lactate/malate dehydrogenase, NAD binding domain SHALO_RS07155 PF00549 CoA-ligase SHALO_RS07155 PF08442 ATP-grasp domain SHALO_RS07160 PF02629 CoA binding domain SHALO_RS07160 PF00549 CoA-ligase SHALO_RS07170 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SHALO_RS07170 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SHALO_RS07170 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SHALO_RS07175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_RS07175 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_RS07175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_RS07200 PF00206 Lyase SHALO_RS07200 PF10415 Fumarase C C-terminus SHALO_RS07215 PF01914 MarC family integral membrane protein SHALO_RS07230 PF01168 Alanine racemase, N-terminal domain SHALO_RS07235 PF02163 Peptidase family M50 SHALO_RS07235 PF17820 PDZ domain SHALO_RS07240 PF01066 CDP-alcohol phosphatidyltransferase SHALO_RS07250 PF00701 Dihydrodipicolinate synthetase family SHALO_RS07260 PF01180 Dihydroorotate dehydrogenase SHALO_RS07265 PF00664 ABC transporter transmembrane region SHALO_RS07265 PF00005 ABC transporter SHALO_RS07270 PF01406 tRNA synthetases class I (C) catalytic domain SHALO_RS07275 PF03023 Lipid II flippase MurJ SHALO_RS07285 PF07499 RuvA, C-terminal domain SHALO_RS07285 PF01330 RuvA N terminal domain SHALO_RS07290 PF07478 D-ala D-ala ligase C-terminus SHALO_RS07290 PF01820 D-ala D-ala ligase N-terminus SHALO_RS07305 PF00708 Acylphosphatase SHALO_RS07310 PF08245 Mur ligase middle domain SHALO_RS07310 PF02875 Mur ligase family, glutamate ligase domain SHALO_RS07310 PF01225 Mur ligase family, catalytic domain SHALO_RS07315 PF07085 DRTGG domain SHALO_RS07315 PF01515 Phosphate acetyl/butaryl transferase SHALO_RS07320 PF00871 Acetokinase family SHALO_RS07330 PF02107 Flagellar L-ring protein SHALO_RS07340 PF00482 Type II secretion system (T2SS), protein F SHALO_RS07345 PF00437 Type II/IV secretion system protein SHALO_RS07345 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SHALO_RS07360 PF00263 Bacterial type II and III secretion system protein SHALO_RS07360 PF03958 Bacterial type II/III secretion system short domain SHALO_RS07380 PF01926 50S ribosome-binding GTPase SHALO_RS07380 PF07650 KH domain SHALO_RS07385 PF07724 AAA domain (Cdc48 subfamily) SHALO_RS07385 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_RS07390 PF00227 Proteasome subunit SHALO_RS07395 PF01281 Ribosomal protein L9, N-terminal domain SHALO_RS07395 PF03948 Ribosomal protein L9, C-terminal domain SHALO_RS07405 PF00764 Arginosuccinate synthase SHALO_RS07410 PF01479 S4 domain SHALO_RS07415 PF00591 Glycosyl transferase family, a/b domain SHALO_RS07415 PF02885 Glycosyl transferase family, helical bundle domain SHALO_RS07420 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SHALO_RS07425 PF00005 ABC transporter SHALO_RS07425 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_RS07430 PF04963 Sigma-54 factor, core binding domain SHALO_RS07430 PF00309 Sigma-54 factor, Activator interacting domain (AID) SHALO_RS07430 PF04552 Sigma-54, DNA binding domain SHALO_RS07440 PF04376 Arginine-tRNA-protein transferase, N terminus SHALO_RS07440 PF04377 Arginine-tRNA-protein transferase, C terminus SHALO_RS07455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS07455 PF02743 Cache domain SHALO_RS07455 PF00672 HAMP domain SHALO_RS07460 PF13359 DDE superfamily endonuclease SHALO_RS07460 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_RS07465 PF13359 DDE superfamily endonuclease SHALO_RS07465 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_RS07470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS07470 PF00672 HAMP domain SHALO_RS07470 PF02743 Cache domain SHALO_RS07475 PF00072 Response regulator receiver domain SHALO_RS07485 PF08447 PAS fold SHALO_RS07485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS07485 PF08448 PAS fold SHALO_RS07490 PF00072 Response regulator receiver domain SHALO_RS07490 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS07505 PF00890 FAD binding domain SHALO_RS07505 PF14537 Cytochrome c3 SHALO_RS07510 PF00925 GTP cyclohydrolase II SHALO_RS07515 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_RS07515 PF00925 GTP cyclohydrolase II SHALO_RS07520 PF00885 6,7-dimethyl-8-ribityllumazine synthase SHALO_RS07545 PF08448 PAS fold SHALO_RS07545 PF08447 PAS fold SHALO_RS07545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS07550 PF00072 Response regulator receiver domain SHALO_RS07550 PF01966 HD domain SHALO_RS07565 PF08447 PAS fold SHALO_RS07565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS07565 PF08448 PAS fold SHALO_RS07570 PF00072 Response regulator receiver domain SHALO_RS07570 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS07580 PF12800 4Fe-4S binding domain SHALO_RS07580 PF12838 4Fe-4S dicluster domain SHALO_RS07590 PF03186 CobD/Cbib protein SHALO_RS07595 PF00155 Aminotransferase class I and II SHALO_RS07600 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SHALO_RS07605 PF07685 CobB/CobQ-like glutamine amidotransferase domain SHALO_RS07610 PF02277 Phosphoribosyltransferase SHALO_RS07620 PF02654 Cobalamin-5-phosphate synthase SHALO_RS07625 PF00300 Histidine phosphatase superfamily (branch 1) SHALO_RS07630 PF06180 Cobalt chelatase (CbiK) SHALO_RS07635 PF01032 FecCD transport family SHALO_RS07640 PF00005 ABC transporter SHALO_RS07650 PF02570 Precorrin-8X methylmutase SHALO_RS07655 PF01888 CbiD SHALO_RS07665 PF05175 Methyltransferase small domain SHALO_RS07670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_RS07675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_RS07680 PF11760 Cobalamin synthesis G N-terminal SHALO_RS07680 PF01890 Cobalamin synthesis G C-terminus SHALO_RS07680 PF11761 Cobalamin biosynthesis central region SHALO_RS07685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_RS07685 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SHALO_RS07690 PF02602 Uroporphyrinogen-III synthase HemD SHALO_RS07690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_RS07695 PF02571 Precorrin-6x reductase CbiJ/CobK SHALO_RS07700 PF00005 ABC transporter SHALO_RS07700 PF00664 ABC transporter transmembrane region SHALO_RS07705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SHALO_RS07705 PF07685 CobB/CobQ-like glutamine amidotransferase domain SHALO_RS07715 PF10414 Sirohaem synthase dimerisation region SHALO_RS07715 PF14824 Sirohaem biosynthesis protein central SHALO_RS07715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_RS07720 PF18665 Tetracyclin repressor-like, C-terminal domain SHALO_RS07720 PF00440 Bacterial regulatory proteins, tetR family SHALO_RS07825 PF13356 Arm DNA-binding domain SHALO_RS07825 PF00589 Phage integrase family SHALO_RS07835 PF00216 Bacterial DNA-binding protein SHALO_RS07845 PF17854 FtsK alpha domain SHALO_RS07845 PF09397 Ftsk gamma domain SHALO_RS07845 PF01580 FtsK/SpoIIIE family SHALO_RS07850 PF00330 Aconitase family (aconitate hydratase) SHALO_RS07850 PF11791 Aconitate B N-terminal domain SHALO_RS07850 PF06434 Aconitate hydratase 2 N-terminus SHALO_RS07855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_RS07860 PF00391 PEP-utilising enzyme, mobile domain SHALO_RS07860 PF02896 PEP-utilising enzyme, TIM barrel domain SHALO_RS07860 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SHALO_RS07865 PF07690 Major Facilitator Superfamily SHALO_RS07885 PF05958 tRNA (Uracil-5-)-methyltransferase SHALO_RS07890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS07890 PF02743 Cache domain SHALO_RS07890 PF00672 HAMP domain SHALO_RS07895 PF13380 CoA binding domain SHALO_RS07900 PF13291 ACT domain SHALO_RS07900 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_RS07910 PF00005 ABC transporter SHALO_RS07915 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS07920 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS07925 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_RS07930 PF01474 Class-II DAHP synthetase family SHALO_RS07940 PF09335 SNARE associated Golgi protein SHALO_RS07950 PF02687 FtsX-like permease family SHALO_RS07950 PF12704 MacB-like periplasmic core domain SHALO_RS07950 PF00005 ABC transporter SHALO_RS07955 PF00171 Aldehyde dehydrogenase family SHALO_RS07960 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_RS07970 PF05175 Methyltransferase small domain SHALO_RS07975 PF03692 Putative zinc- or iron-chelating domain SHALO_RS07985 PF00218 Indole-3-glycerol phosphate synthase SHALO_RS08005 PF01891 Cobalt uptake substrate-specific transmembrane region SHALO_RS08005 PF13190 PDGLE domain SHALO_RS08020 PF00005 ABC transporter SHALO_RS08025 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SHALO_RS08030 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SHALO_RS08045 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_RS08060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_RS08060 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_RS08060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_RS08065 PF10369 Small subunit of acetolactate synthase SHALO_RS08070 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SHALO_RS08070 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_RS08080 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_RS08080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_RS08085 PF00155 Aminotransferase class I and II SHALO_RS08090 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_RS08095 PF01590 GAF domain SHALO_RS08095 PF00158 Sigma-54 interaction domain SHALO_RS08095 PF02954 Bacterial regulatory protein, Fis family SHALO_RS08105 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_RS08110 PF03139 Vanadium/alternative nitrogenase delta subunit SHALO_RS08115 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_RS08120 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_RS08125 PF17810 Arginine decarboxylase helical bundle domain SHALO_RS08125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SHALO_RS08125 PF17944 Arginine decarboxylase C-terminal helical extension SHALO_RS08130 PF13393 Histidyl-tRNA synthetase SHALO_RS08130 PF03129 Anticodon binding domain SHALO_RS08135 PF02223 Thymidylate kinase SHALO_RS08140 PF01467 Cytidylyltransferase-like SHALO_RS08145 PF02441 Flavoprotein SHALO_RS08160 PF00672 HAMP domain SHALO_RS08160 PF02743 Cache domain SHALO_RS08160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS08165 PF03453 MoeA N-terminal region (domain I and II) SHALO_RS08165 PF03454 MoeA C-terminal region (domain IV) SHALO_RS08165 PF00994 Probable molybdopterin binding domain SHALO_RS08170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SHALO_RS08190 PF00939 Sodium:sulfate symporter transmembrane region SHALO_RS08200 PF00731 AIR carboxylase SHALO_RS08205 PF02540 NAD synthase SHALO_RS08210 PF01969 Protein of unknown function DUF111 SHALO_RS08215 PF09861 Lactate racemase N-terminal domain SHALO_RS08220 PF05681 Fumarate hydratase (Fumerase) SHALO_RS08220 PF05683 Fumarase C-terminus SHALO_RS08225 PF05681 Fumarate hydratase (Fumerase) SHALO_RS08225 PF05683 Fumarase C-terminus SHALO_RS08230 PF03605 Anaerobic c4-dicarboxylate membrane transporter SHALO_RS08235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS08235 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS08235 PF09308 LuxQ, periplasmic SHALO_RS08235 PF00072 Response regulator receiver domain SHALO_RS08240 PF00072 Response regulator receiver domain SHALO_RS08240 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS08265 PF18644 Phage integrase SAM-like domain SHALO_RS08265 PF00589 Phage integrase family SHALO_RS08270 PF01702 Queuine tRNA-ribosyltransferase SHALO_RS08280 PF01761 3-dehydroquinate synthase SHALO_RS08290 PF00919 Uncharacterized protein family UPF0004 SHALO_RS08290 PF04055 Radical SAM superfamily SHALO_RS08295 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_RS08295 PF06480 FtsH Extracellular SHALO_RS08295 PF17862 AAA+ lid domain SHALO_RS08295 PF01434 Peptidase family M41 SHALO_RS08315 PF00296 Luciferase-like monooxygenase SHALO_RS08335 PF08279 HTH domain SHALO_RS08335 PF13280 WYL domain SHALO_RS08340 PF01479 S4 domain SHALO_RS08340 PF00849 RNA pseudouridylate synthase SHALO_RS08350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_RS08350 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_RS08350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_RS08365 PF04960 Glutaminase SHALO_RS08370 PF00563 EAL domain SHALO_RS08370 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS08370 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS08375 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SHALO_RS08375 PF12833 Helix-turn-helix domain SHALO_RS08380 PF03653 Uncharacterised protein family (UPF0093) SHALO_RS08385 PF00440 Bacterial regulatory proteins, tetR family SHALO_RS08385 PF08359 YsiA-like protein, C-terminal region SHALO_RS08395 PF00529 HlyD membrane-fusion protein of T1SS SHALO_RS08395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS08400 PF00873 AcrB/AcrD/AcrF family SHALO_RS08415 PF02915 Rubrerythrin SHALO_RS08425 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SHALO_RS08430 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SHALO_RS08430 PF03900 Porphobilinogen deaminase, C-terminal domain SHALO_RS08445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_RS08445 PF04073 Aminoacyl-tRNA editing domain SHALO_RS08445 PF03129 Anticodon binding domain SHALO_RS08450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SHALO_RS08450 PF01488 Shikimate / quinate 5-dehydrogenase SHALO_RS08450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SHALO_RS08455 PF00348 Polyprenyl synthetase SHALO_RS08470 PF01053 Cys/Met metabolism PLP-dependent enzyme SHALO_RS08475 PF02082 Transcriptional regulator SHALO_RS08480 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_RS08485 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS08490 PF10458 Valyl tRNA synthetase tRNA binding arm SHALO_RS08490 PF08264 Anticodon-binding domain of tRNA SHALO_RS08490 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_RS08495 PF03480 Bacterial extracellular solute-binding protein, family 7 SHALO_RS08500 PF00994 Probable molybdopterin binding domain SHALO_RS08510 PF00815 Histidinol dehydrogenase SHALO_RS08520 PF01116 Fructose-bisphosphate aldolase class-II SHALO_RS08530 PF00730 HhH-GPD superfamily base excision DNA repair protein SHALO_RS08530 PF00633 Helix-hairpin-helix motif SHALO_RS08540 PF01546 Peptidase family M20/M25/M40 SHALO_RS08540 PF07687 Peptidase dimerisation domain SHALO_RS08550 PF08003 Protein of unknown function (DUF1698) SHALO_RS08565 PF02540 NAD synthase SHALO_RS08570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_RS08575 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SHALO_RS08580 PF00696 Amino acid kinase family SHALO_RS08585 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_RS08590 PF02348 Cytidylyltransferase SHALO_RS08605 PF02683 Cytochrome C biogenesis protein transmembrane region SHALO_RS08605 PF11412 Disulphide bond corrector protein DsbC SHALO_RS08610 PF03976 Polyphosphate kinase 2 (PPK2) SHALO_RS08615 PF00012 Hsp70 protein SHALO_RS08620 PF01025 GrpE SHALO_RS08635 PF00312 Ribosomal protein S15 SHALO_RS08640 PF02082 Transcriptional regulator SHALO_RS08645 PF00771 FHIPEP family SHALO_RS08660 PF13649 Methyltransferase domain SHALO_RS08665 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS08670 PF01687 Riboflavin kinase SHALO_RS08670 PF06574 FAD synthetase SHALO_RS08675 PF00163 Ribosomal protein S4/S9 N-terminal domain SHALO_RS08675 PF01479 S4 domain SHALO_RS08680 PF01653 NAD-dependent DNA ligase adenylation domain SHALO_RS08680 PF12826 Helix-hairpin-helix motif SHALO_RS08680 PF03120 NAD-dependent DNA ligase OB-fold domain SHALO_RS08680 PF00533 BRCA1 C Terminus (BRCT) domain SHALO_RS08685 PF01925 Sulfite exporter TauE/SafE SHALO_RS08695 PF00809 Pterin binding enzyme SHALO_RS08700 PF12169 DNA polymerase III subunits gamma and tau domain III SHALO_RS08710 PF13840 ACT domain SHALO_RS08710 PF00696 Amino acid kinase family SHALO_RS08710 PF01842 ACT domain SHALO_RS08715 PF00293 NUDIX domain SHALO_RS08720 PF06969 HemN C-terminal domain SHALO_RS08720 PF04055 Radical SAM superfamily SHALO_RS08725 PF00999 Sodium/hydrogen exchanger family SHALO_RS08725 PF02254 TrkA-N domain SHALO_RS08730 PF13411 MerR HTH family regulatory protein SHALO_RS08735 PF00684 DnaJ central domain SHALO_RS08735 PF00226 DnaJ domain SHALO_RS08735 PF01556 DnaJ C terminal domain SHALO_RS08740 PF00595 PDZ domain SHALO_RS08745 PF00072 Response regulator receiver domain SHALO_RS08745 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS08765 PF00271 Helicase conserved C-terminal domain SHALO_RS08765 PF07516 SecA Wing and Scaffold domain SHALO_RS08765 PF01043 SecA preprotein cross-linking domain SHALO_RS08765 PF07517 SecA DEAD-like domain SHALO_RS08765 PF02810 SEC-C motif SHALO_RS08775 PF00563 EAL domain SHALO_RS08775 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS08775 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS08780 PF06965 Na+/H+ antiporter 1 SHALO_RS08785 PF01926 50S ribosome-binding GTPase SHALO_RS08785 PF12631 MnmE helical domain SHALO_RS08785 PF10396 GTP-binding protein TrmE N-terminus SHALO_RS08795 PF02096 60Kd inner membrane protein SHALO_RS08795 PF14849 YidC periplasmic domain SHALO_RS08800 PF01809 Putative membrane protein insertion efficiency factor SHALO_RS08805 PF00468 Ribosomal protein L34 SHALO_RS08810 PF00501 AMP-binding enzyme SHALO_RS08810 PF13193 AMP-binding enzyme C-terminal domain SHALO_RS08810 PF00668 Condensation domain SHALO_RS08810 PF00550 Phosphopantetheine attachment site SHALO_RS08815 PF13941 MutL protein SHALO_RS08820 PF06368 Methylaspartate mutase E chain (MutE) SHALO_RS08825 PF02310 B12 binding domain SHALO_RS08835 PF03737 Aldolase/RraA SHALO_RS08850 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_RS08850 PF02861 Clp amino terminal domain, pathogenicity island component SHALO_RS08850 PF17871 AAA lid domain SHALO_RS08850 PF07724 AAA domain (Cdc48 subfamily) SHALO_RS08850 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_RS08855 PF13180 PDZ domain SHALO_RS08855 PF03572 Peptidase family S41 SHALO_RS08860 PF01259 SAICAR synthetase SHALO_RS08865 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SHALO_RS08880 PF01553 Acyltransferase SHALO_RS08885 PF00183 Hsp90 protein SHALO_RS08895 PF03190 Protein of unknown function, DUF255 SHALO_RS08900 PF00581 Rhodanese-like domain SHALO_RS08905 PF13361 UvrD-like helicase C-terminal domain SHALO_RS08905 PF00580 UvrD/REP helicase N-terminal domain SHALO_RS08940 PF05970 PIF1-like helicase SHALO_RS08940 PF02689 Helicase SHALO_RS08960 PF08534 Redoxin SHALO_RS08970 PF00403 Heavy-metal-associated domain SHALO_RS08975 PF00403 Heavy-metal-associated domain SHALO_RS08980 PF01966 HD domain SHALO_RS08985 PF02646 RmuC family SHALO_RS08995 PF01795 MraW methylase family SHALO_RS09000 PF00202 Aminotransferase class-III SHALO_RS09005 PF13145 PPIC-type PPIASE domain SHALO_RS09010 PF02491 SHS2 domain inserted in FTSA SHALO_RS09015 PF00091 Tubulin/FtsZ family, GTPase domain SHALO_RS09015 PF12327 FtsZ family, C-terminal domain SHALO_RS09025 PF17827 PrmC N-terminal domain SHALO_RS09025 PF02390 Putative methyltransferase SHALO_RS09025 PF05175 Methyltransferase small domain SHALO_RS09030 PF01435 Peptidase family M48 SHALO_RS09035 PF00672 HAMP domain SHALO_RS09035 PF12729 Four helix bundle sensory module for signal transduction SHALO_RS09035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS09040 PF00005 ABC transporter SHALO_RS09040 PF16326 ABC transporter C-terminal domain SHALO_RS09040 PF12848 ABC transporter SHALO_RS09045 PF00672 HAMP domain SHALO_RS09045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS09055 PF01883 Iron-sulfur cluster assembly protein SHALO_RS09070 PF02705 K+ potassium transporter SHALO_RS09075 PF02142 MGS-like domain SHALO_RS09075 PF01808 AICARFT/IMPCHase bienzyme SHALO_RS09080 PF02600 Disulfide bond formation protein DsbB SHALO_RS09090 PF03061 Thioesterase superfamily SHALO_RS09095 PF05099 Tellurite resistance protein TerB SHALO_RS09095 PF00226 DnaJ domain SHALO_RS09100 PF00155 Aminotransferase class I and II SHALO_RS09120 PF09997 Predicted membrane protein (DUF2238) SHALO_RS09125 PF00586 AIR synthase related protein, N-terminal domain SHALO_RS09125 PF02769 AIR synthase related protein, C-terminal domain SHALO_RS09125 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SHALO_RS09130 PF00563 EAL domain SHALO_RS09130 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS09130 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS09135 PF02416 mttA/Hcf106 family SHALO_RS09140 PF00902 Sec-independent protein translocase protein (TatC) SHALO_RS09145 PF02547 Queuosine biosynthesis protein SHALO_RS09150 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SHALO_RS09150 PF17287 POTRA domain SHALO_RS09150 PF08479 POTRA domain, ShlB-type SHALO_RS09155 PF13332 Hemagglutinin repeat SHALO_RS09155 PF04829 Pre-toxin domain with VENN motif SHALO_RS09155 PF05594 Haemagluttinin repeat SHALO_RS09155 PF13332 Hemagglutinin repeat SHALO_RS09155 PF04829 Pre-toxin domain with VENN motif SHALO_RS09155 PF05860 haemagglutination activity domain SHALO_RS09155 PF15526 Novel toxin 21 SHALO_RS09155 PF05860 haemagglutination activity domain SHALO_RS09155 PF05594 Haemagluttinin repeat SHALO_RS09155 PF15526 Novel toxin 21 SHALO_RS09220 PF00072 Response regulator receiver domain SHALO_RS09225 PF00672 HAMP domain SHALO_RS09225 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS09225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS09225 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SHALO_RS09225 PF00072 Response regulator receiver domain SHALO_RS09225 PF01627 Hpt domain SHALO_RS09230 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SHALO_RS09230 PF00753 Metallo-beta-lactamase superfamily SHALO_RS09230 PF10996 Beta-Casp domain SHALO_RS09235 PF00501 AMP-binding enzyme SHALO_RS09245 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS09245 PF00593 TonB dependent receptor SHALO_RS09250 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS09250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS09250 PF02702 Osmosensitive K+ channel His kinase sensor domain SHALO_RS09250 PF13493 Domain of unknown function (DUF4118) SHALO_RS09250 PF13492 GAF domain SHALO_RS09255 PF00072 Response regulator receiver domain SHALO_RS09255 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS09260 PF02386 Cation transport protein SHALO_RS09265 PF02254 TrkA-N domain SHALO_RS09265 PF02080 TrkA-C domain SHALO_RS09270 PF01641 SelR domain SHALO_RS09275 PF00571 CBS domain SHALO_RS09275 PF01595 Cyclin M transmembrane N-terminal domain SHALO_RS09275 PF03471 Transporter associated domain SHALO_RS09285 PF12804 MobA-like NTP transferase domain SHALO_RS09290 PF02625 XdhC and CoxI family SHALO_RS09290 PF13478 XdhC Rossmann domain SHALO_RS09295 PF14535 AMP-binding enzyme C-terminal domain SHALO_RS09295 PF00501 AMP-binding enzyme SHALO_RS09300 PF04055 Radical SAM superfamily SHALO_RS09300 PF13186 Iron-sulfur cluster-binding domain SHALO_RS09310 PF01209 ubiE/COQ5 methyltransferase family SHALO_RS09320 PF01593 Flavin containing amine oxidoreductase SHALO_RS09325 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SHALO_RS09325 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SHALO_RS09325 PF00111 2Fe-2S iron-sulfur cluster binding domain SHALO_RS09325 PF01799 [2Fe-2S] binding domain SHALO_RS09330 PF13426 PAS domain SHALO_RS09330 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS09330 PF00672 HAMP domain SHALO_RS09335 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS09335 PF00072 Response regulator receiver domain SHALO_RS09345 PF01292 Prokaryotic cytochrome b561 SHALO_RS09360 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS09360 PF00072 Response regulator receiver domain SHALO_RS09370 PF16916 Dimerisation domain of Zinc Transporter SHALO_RS09370 PF01545 Cation efflux family SHALO_RS09390 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS09390 PF00593 TonB dependent receptor SHALO_RS09400 PF00924 Mechanosensitive ion channel SHALO_RS09405 PF05116 Sucrose-6F-phosphate phosphohydrolase SHALO_RS09405 PF00982 Glycosyltransferase family 20 SHALO_RS09420 PF14437 MafB19-like deaminase SHALO_RS09435 PF02146 Sir2 family SHALO_RS09445 PF02965 Vitamin B12 dependent methionine synthase, activation domain SHALO_RS09445 PF02310 B12 binding domain SHALO_RS09445 PF00809 Pterin binding enzyme SHALO_RS09445 PF02607 B12 binding domain SHALO_RS09445 PF02574 Homocysteine S-methyltransferase SHALO_RS09450 PF13458 Periplasmic binding protein SHALO_RS09455 PF00672 HAMP domain SHALO_RS09455 PF02743 Cache domain SHALO_RS09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS09460 PF01810 LysE type translocator SHALO_RS09465 PF00892 EamA-like transporter family SHALO_RS09470 PF00884 Sulfatase SHALO_RS09475 PF00909 Ammonium Transporter Family SHALO_RS09480 PF00543 Nitrogen regulatory protein P-II SHALO_RS09495 PF01966 HD domain SHALO_RS09500 PF02092 Glycyl-tRNA synthetase beta subunit SHALO_RS09515 PF00484 Carbonic anhydrase SHALO_RS09520 PF06865 Pyrimidine/purine nucleoside phosphorylase SHALO_RS09525 PF00563 EAL domain SHALO_RS09525 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS09525 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS09540 PF00588 SpoU rRNA Methylase family SHALO_RS09545 PF00551 Formyl transferase SHALO_RS09545 PF01842 ACT domain SHALO_RS09550 PF12627 Probable RNA and SrmB- binding site of polymerase A SHALO_RS09550 PF01743 Poly A polymerase head domain SHALO_RS09550 PF13735 tRNA nucleotidyltransferase domain 2 putative SHALO_RS09565 PF00180 Isocitrate/isopropylmalate dehydrogenase SHALO_RS09570 PF00694 Aconitase C-terminal domain SHALO_RS09575 PF00005 ABC transporter SHALO_RS09585 PF00873 AcrB/AcrD/AcrF family SHALO_RS09600 PF03372 Endonuclease/Exonuclease/phosphatase family SHALO_RS09615 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SHALO_RS09615 PF09297 NADH pyrophosphatase zinc ribbon domain SHALO_RS09615 PF00293 NUDIX domain SHALO_RS09620 PF00174 Oxidoreductase molybdopterin binding domain SHALO_RS09625 PF01794 Ferric reductase like transmembrane component SHALO_RS09630 PF01810 LysE type translocator SHALO_RS09635 PF02743 Cache domain SHALO_RS09635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS09635 PF00672 HAMP domain SHALO_RS09645 PF02525 Flavodoxin-like fold SHALO_RS09650 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_RS09660 PF08448 PAS fold SHALO_RS09660 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS09670 PF09962 Uncharacterized conserved protein (DUF2196) SHALO_RS09675 PF00271 Helicase conserved C-terminal domain SHALO_RS09675 PF00270 DEAD/DEAH box helicase SHALO_RS09675 PF00570 HRDC domain SHALO_RS09675 PF16124 RecQ zinc-binding SHALO_RS09675 PF09382 RQC domain SHALO_RS09690 PF00270 DEAD/DEAH box helicase SHALO_RS09690 PF00271 Helicase conserved C-terminal domain SHALO_RS09700 PF00563 EAL domain SHALO_RS09700 PF13426 PAS domain SHALO_RS09700 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS09710 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS09710 PF00072 Response regulator receiver domain SHALO_RS09740 PF13193 AMP-binding enzyme C-terminal domain SHALO_RS09740 PF00501 AMP-binding enzyme SHALO_RS09740 PF16177 Acetyl-coenzyme A synthetase N-terminus SHALO_RS09750 PF00285 Citrate synthase, C-terminal domain SHALO_RS09755 PF03972 MmgE/PrpD family SHALO_RS09765 PF08274 PhnA Zinc-Ribbon SHALO_RS09765 PF03831 PhnA domain SHALO_RS09775 PF03591 AzlC protein SHALO_RS09780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_RS09780 PF00460 Flagella basal body rod protein SHALO_RS09785 PF00460 Flagella basal body rod protein SHALO_RS09785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_RS09790 PF04539 Sigma-70 region 3 SHALO_RS09790 PF04545 Sigma-70, region 4 SHALO_RS09790 PF00140 Sigma-70 factor, region 1.2 SHALO_RS09790 PF04542 Sigma-70 region 2 SHALO_RS09800 PF01638 HxlR-like helix-turn-helix SHALO_RS09810 PF03358 NADPH-dependent FMN reductase SHALO_RS09820 PF13193 AMP-binding enzyme C-terminal domain SHALO_RS09820 PF00501 AMP-binding enzyme SHALO_RS09820 PF16177 Acetyl-coenzyme A synthetase N-terminus SHALO_RS09825 PF00474 Sodium:solute symporter family SHALO_RS09830 PF04341 Protein of unknown function, DUF485 SHALO_RS09835 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS09835 PF00072 Response regulator receiver domain SHALO_RS09845 PF04371 Porphyromonas-type peptidyl-arginine deiminase SHALO_RS09850 PF16916 Dimerisation domain of Zinc Transporter SHALO_RS09850 PF01545 Cation efflux family SHALO_RS09855 PF02421 Ferrous iron transport protein B SHALO_RS09855 PF07664 Ferrous iron transport protein B C terminus SHALO_RS09855 PF07670 Nucleoside recognition SHALO_RS09860 PF04023 FeoA domain SHALO_RS09865 PF00795 Carbon-nitrogen hydrolase SHALO_RS09885 PF03459 TOBE domain SHALO_RS09890 PF00293 NUDIX domain SHALO_RS09895 PF01544 CorA-like Mg2+ transporter protein SHALO_RS09900 PF01551 Peptidase family M23 SHALO_RS09900 PF04225 Opacity-associated protein A LysM-like domain SHALO_RS09910 PF01565 FAD binding domain SHALO_RS09910 PF02913 FAD linked oxidases, C-terminal domain SHALO_RS09915 PF03631 Virulence factor BrkB SHALO_RS09925 PF03796 DnaB-like helicase C terminal domain SHALO_RS09930 PF04551 GcpE protein SHALO_RS09935 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SHALO_RS09935 PF18074 Primosomal protein N C-terminal domain SHALO_RS09935 PF00270 DEAD/DEAH box helicase SHALO_RS09935 PF17764 3′ DNA-binding domain (3′BD) SHALO_RS09935 PF00271 Helicase conserved C-terminal domain SHALO_RS09945 PF07963 Prokaryotic N-terminal methylation motif SHALO_RS09945 PF00114 Pilin (bacterial filament) SHALO_RS09960 PF17757 UvrB interaction domain SHALO_RS09960 PF04851 Type III restriction enzyme, res subunit SHALO_RS09960 PF00271 Helicase conserved C-terminal domain SHALO_RS09960 PF02151 UvrB/uvrC motif SHALO_RS09960 PF12344 Ultra-violet resistance protein B SHALO_RS09965 PF13090 Polyphosphate kinase C-terminal domain 2 SHALO_RS09965 PF13089 Polyphosphate kinase N-terminal domain SHALO_RS09965 PF02503 Polyphosphate kinase middle domain SHALO_RS09965 PF17941 Polyphosphate kinase C-terminal domain 1 SHALO_RS09970 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_RS09975 PF14579 Helix-hairpin-helix motif SHALO_RS09975 PF02811 PHP domain SHALO_RS09975 PF00929 Exonuclease SHALO_RS09975 PF07733 Bacterial DNA polymerase III alpha NTPase domain SHALO_RS09975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SHALO_RS09980 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SHALO_RS09985 PF00834 Ribulose-phosphate 3 epimerase family SHALO_RS09990 PF00830 Ribosomal L28 family SHALO_RS09995 PF01960 ArgJ family SHALO_RS10010 PF13277 YmdB-like protein SHALO_RS10015 PF02559 CarD-like/TRCF domain SHALO_RS10015 PF00270 DEAD/DEAH box helicase SHALO_RS10015 PF00271 Helicase conserved C-terminal domain SHALO_RS10015 PF03461 TRCF domain SHALO_RS10015 PF17757 UvrB interaction domain SHALO_RS10025 PF01551 Peptidase family M23 SHALO_RS10025 PF04225 Opacity-associated protein A LysM-like domain SHALO_RS10030 PF08245 Mur ligase middle domain SHALO_RS10035 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS10045 PF13603 Leucyl-tRNA synthetase, Domain 2 SHALO_RS10045 PF09334 tRNA synthetases class I (M) SHALO_RS10045 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_RS10050 PF02355 Protein export membrane protein SHALO_RS10050 PF07549 SecD/SecF GG Motif SHALO_RS10055 PF02355 Protein export membrane protein SHALO_RS10060 PF02699 Preprotein translocase subunit SHALO_RS10070 PF02773 S-adenosylmethionine synthetase, C-terminal domain SHALO_RS10070 PF02772 S-adenosylmethionine synthetase, central domain SHALO_RS10070 PF00438 S-adenosylmethionine synthetase, N-terminal domain SHALO_RS10080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SHALO_RS10085 PF02861 Clp amino terminal domain, pathogenicity island component SHALO_RS10085 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_RS10085 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_RS10085 PF17871 AAA lid domain SHALO_RS10085 PF07724 AAA domain (Cdc48 subfamily) SHALO_RS10090 PF02617 ATP-dependent Clp protease adaptor protein ClpS SHALO_RS10100 PF01668 SmpB protein SHALO_RS10105 PF00288 GHMP kinases N terminal domain SHALO_RS10110 PF02599 Global regulator protein family SHALO_RS10115 PF01509 TruB family pseudouridylate synthase (N terminal domain) SHALO_RS10120 PF00580 UvrD/REP helicase N-terminal domain SHALO_RS10120 PF13361 UvrD-like helicase C-terminal domain SHALO_RS10125 PF03466 LysR substrate binding domain SHALO_RS10125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_RS10145 PF00425 chorismate binding enzyme SHALO_RS10150 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SHALO_RS10150 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SHALO_RS10170 PF12833 Helix-turn-helix domain SHALO_RS10175 PF00392 Bacterial regulatory proteins, gntR family SHALO_RS10175 PF00155 Aminotransferase class I and II SHALO_RS10195 PF01245 Ribosomal protein L19 SHALO_RS10200 PF01746 tRNA (Guanine-1)-methyltransferase SHALO_RS10205 PF01782 RimM N-terminal domain SHALO_RS10215 PF00886 Ribosomal protein S16 SHALO_RS10220 PF02881 SRP54-type protein, helical bundle domain SHALO_RS10220 PF02978 Signal peptide binding domain SHALO_RS10220 PF00448 SRP54-type protein, GTPase domain SHALO_RS10225 PF00849 RNA pseudouridylate synthase SHALO_RS10230 PF00534 Glycosyl transferases group 1 SHALO_RS10230 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SHALO_RS10240 PF01784 NIF3 (NGG1p interacting factor 3) SHALO_RS10245 PF02091 Glycyl-tRNA synthetase alpha subunit SHALO_RS10255 PF00731 AIR carboxylase SHALO_RS10260 PF01136 Peptidase family U32 SHALO_RS10270 PF02811 PHP domain SHALO_RS10275 PF03951 Glutamine synthetase, beta-Grasp domain SHALO_RS10275 PF00120 Glutamine synthetase, catalytic domain SHALO_RS10280 PF17092 Penicillin-binding protein OB-like domain SHALO_RS10280 PF00912 Transglycosylase SHALO_RS10280 PF00905 Penicillin binding protein transpeptidase domain SHALO_RS10285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SHALO_RS10285 PF00005 ABC transporter SHALO_RS10290 PF00155 Aminotransferase class I and II SHALO_RS10295 PF02545 Maf-like protein SHALO_RS10305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_RS10305 PF02272 DHHA1 domain SHALO_RS10305 PF01411 tRNA synthetases class II (A) SHALO_RS10315 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS10315 PF00072 Response regulator receiver domain SHALO_RS10320 PF13188 PAS domain SHALO_RS10320 PF00989 PAS fold SHALO_RS10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS10320 PF13426 PAS domain SHALO_RS10320 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS10325 PF01568 Molydopterin dinucleotide binding domain SHALO_RS10325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS10325 PF00384 Molybdopterin oxidoreductase SHALO_RS10330 PF12800 4Fe-4S binding domain SHALO_RS10330 PF13247 4Fe-4S dicluster domain SHALO_RS10335 PF04976 DMSO reductase anchor subunit (DmsC) SHALO_RS10340 PF02613 Nitrate reductase delta subunit SHALO_RS10365 PF00762 Ferrochelatase SHALO_RS10375 PF02049 Flagellar hook-basal body complex protein FliE SHALO_RS10380 PF00460 Flagella basal body rod protein SHALO_RS10380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_RS10385 PF00460 Flagella basal body rod protein SHALO_RS10390 PF01098 Cell cycle protein SHALO_RS10395 PF04101 Glycosyltransferase family 28 C-terminal domain SHALO_RS10395 PF03033 Glycosyltransferase family 28 N-terminal domain SHALO_RS10410 PF07670 Nucleoside recognition SHALO_RS10420 PF00892 EamA-like transporter family SHALO_RS10460 PF00117 Glutamine amidotransferase class-I SHALO_RS10465 PF07690 Major Facilitator Superfamily SHALO_RS10470 PF01553 Acyltransferase SHALO_RS10470 PF00501 AMP-binding enzyme SHALO_RS10475 PF01022 Bacterial regulatory protein, arsR family SHALO_RS10490 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SHALO_RS10495 PF04223 Citrate lyase, alpha subunit (CitF) SHALO_RS10500 PF03328 HpcH/HpaI aldolase/citrate lyase family SHALO_RS10505 PF06857 Malonate decarboxylase delta subunit (MdcD) SHALO_RS10510 PF08218 Citrate lyase ligase C-terminal domain SHALO_RS10510 PF00583 Acetyltransferase (GNAT) family SHALO_RS10515 PF05145 Transition state regulatory protein AbrB SHALO_RS10525 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SHALO_RS10525 PF17203 Single cache domain 3 SHALO_RS10525 PF00989 PAS fold SHALO_RS10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS10530 PF00072 Response regulator receiver domain SHALO_RS10530 PF08279 HTH domain SHALO_RS10530 PF12431 Transcriptional regulator SHALO_RS10535 PF01970 Tripartite tricarboxylate transporter TctA family SHALO_RS10550 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS10550 PF00072 Response regulator receiver domain SHALO_RS10550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS10550 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SHALO_RS10550 PF00672 HAMP domain SHALO_RS10550 PF01627 Hpt domain SHALO_RS10555 PF00072 Response regulator receiver domain SHALO_RS10560 PF07690 Major Facilitator Superfamily SHALO_RS10565 PF00156 Phosphoribosyl transferase domain SHALO_RS10570 PF00860 Permease family SHALO_RS10575 PF04055 Radical SAM superfamily SHALO_RS10590 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_RS10600 PF08335 GlnD PII-uridylyltransferase SHALO_RS10600 PF01966 HD domain SHALO_RS10605 PF01380 SIS domain SHALO_RS10610 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_RS10610 PF13359 DDE superfamily endonuclease SHALO_RS10620 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS10650 PF00027 Cyclic nucleotide-binding domain SHALO_RS10650 PF00520 Ion transport protein SHALO_RS10670 PF12848 ABC transporter SHALO_RS10670 PF00005 ABC transporter SHALO_RS10675 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS10675 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS10675 PF00563 EAL domain SHALO_RS10680 PF13247 4Fe-4S dicluster domain SHALO_RS10690 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_RS10690 PF13359 DDE superfamily endonuclease SHALO_RS10695 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_RS10695 PF13359 DDE superfamily endonuclease SHALO_RS10700 PF00361 Proton-conducting membrane transporter SHALO_RS10705 PF00146 NADH dehydrogenase SHALO_RS10710 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_RS10715 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_RS10715 PF00361 Proton-conducting membrane transporter SHALO_RS10720 PF00374 Nickel-dependent hydrogenase SHALO_RS10720 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_RS10720 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_RS10730 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_RS10755 PF03129 Anticodon binding domain SHALO_RS10755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_RS10755 PF02824 TGS domain SHALO_RS10755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_RS10765 PF00899 ThiF family SHALO_RS10770 PF00072 Response regulator receiver domain SHALO_RS10770 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS10785 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle SHALO_RS10785 PF14602 Hexapeptide repeat of succinyl-transferase SHALO_RS10790 PF01883 Iron-sulfur cluster assembly protein SHALO_RS10790 PF10609 NUBPL iron-transfer P-loop NTPase SHALO_RS10795 PF02542 YgbB family SHALO_RS10795 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SHALO_RS10800 PF00072 Response regulator receiver domain SHALO_RS10800 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS10805 PF01747 ATP-sulfurylase SHALO_RS10805 PF14306 PUA-like domain SHALO_RS10820 PF04264 YceI-like domain SHALO_RS10825 PF09186 Domain of unknown function (DUF1949) SHALO_RS10825 PF01205 Uncharacterized protein family UPF0029 SHALO_RS10830 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SHALO_RS10830 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SHALO_RS10835 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS10845 PF08402 TOBE domain SHALO_RS10845 PF00005 ABC transporter SHALO_RS10850 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS10865 PF03459 TOBE domain SHALO_RS10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_RS10870 PF07943 Penicillin-binding protein 5, C-terminal domain SHALO_RS10870 PF00768 D-alanyl-D-alanine carboxypeptidase SHALO_RS10875 PF03807 NADP oxidoreductase coenzyme F420-dependent SHALO_RS10875 PF14748 Pyrroline-5-carboxylate reductase dimerisation SHALO_RS10880 PF00005 ABC transporter SHALO_RS10880 PF02687 FtsX-like permease family SHALO_RS10880 PF12704 MacB-like periplasmic core domain SHALO_RS10885 PF02687 FtsX-like permease family SHALO_RS10885 PF12704 MacB-like periplasmic core domain SHALO_RS10885 PF00005 ABC transporter SHALO_RS10890 PF13533 Biotin-lipoyl like SHALO_RS10895 PF02321 Outer membrane efflux protein SHALO_RS10910 PF05552 Conserved TM helix SHALO_RS10910 PF00924 Mechanosensitive ion channel SHALO_RS10940 PF02311 AraC-like ligand binding domain SHALO_RS10940 PF12833 Helix-turn-helix domain SHALO_RS10975 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SHALO_RS10980 PF01029 NusB family SHALO_RS10985 PF00885 6,7-dimethyl-8-ribityllumazine synthase SHALO_RS11000 PF00793 DAHP synthetase I family SHALO_RS11005 PF00892 EamA-like transporter family SHALO_RS11010 PF00924 Mechanosensitive ion channel SHALO_RS11015 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SHALO_RS11015 PF01926 50S ribosome-binding GTPase SHALO_RS11020 PF01202 Shikimate kinase SHALO_RS11025 PF00579 tRNA synthetases class I (W and Y) SHALO_RS11030 PF02403 Seryl-tRNA synthetase N-terminal domain SHALO_RS11030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_RS11040 PF00682 HMGL-like SHALO_RS11040 PF08502 LeuA allosteric (dimerisation) domain SHALO_RS11045 PF01066 CDP-alcohol phosphatidyltransferase SHALO_RS11055 PF17862 AAA+ lid domain SHALO_RS11055 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_RS11055 PF01434 Peptidase family M41 SHALO_RS11065 PF00072 Response regulator receiver domain SHALO_RS11070 PF00977 Histidine biosynthesis protein SHALO_RS11075 PF00117 Glutamine amidotransferase class-I SHALO_RS11085 PF18527 STT3/PglB C-terminal beta-barrel domain SHALO_RS11085 PF02516 Oligosaccharyl transferase STT3 subunit SHALO_RS11090 PF02719 Polysaccharide biosynthesis protein SHALO_RS11095 PF00953 Glycosyl transferase family 4 SHALO_RS11105 PF01370 NAD dependent epimerase/dehydratase family SHALO_RS11110 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_RS11125 PF00535 Glycosyl transferase family 2 SHALO_RS11135 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_RS11140 PF01370 NAD dependent epimerase/dehydratase family SHALO_RS11145 PF16363 GDP-mannose 4,6 dehydratase SHALO_RS11150 PF07836 DmpG-like communication domain SHALO_RS11150 PF00682 HMGL-like SHALO_RS11155 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SHALO_RS11155 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_RS11160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_RS11160 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_RS11160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_RS11165 PF16363 GDP-mannose 4,6 dehydratase SHALO_RS11170 PF00483 Nucleotidyl transferase SHALO_RS11175 PF01370 NAD dependent epimerase/dehydratase family SHALO_RS11185 PF16363 GDP-mannose 4,6 dehydratase SHALO_RS11190 PF00483 Nucleotidyl transferase SHALO_RS11190 PF01050 Mannose-6-phosphate isomerase SHALO_RS11195 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SHALO_RS11195 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SHALO_RS11195 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SHALO_RS11200 PF14743 DNA ligase OB-like domain SHALO_RS11200 PF01068 ATP dependent DNA ligase domain SHALO_RS11205 PF16363 GDP-mannose 4,6 dehydratase SHALO_RS11210 PF00483 Nucleotidyl transferase SHALO_RS11215 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SHALO_RS11215 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SHALO_RS11215 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SHALO_RS11215 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SHALO_RS11265 PF13580 SIS domain SHALO_RS11270 PF01467 Cytidylyltransferase-like SHALO_RS11270 PF00294 pfkB family carbohydrate kinase SHALO_RS11295 PF00403 Heavy-metal-associated domain SHALO_RS11300 PF00563 EAL domain SHALO_RS11300 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS11300 PF08448 PAS fold SHALO_RS11305 PF00892 EamA-like transporter family SHALO_RS11310 PF00072 Response regulator receiver domain SHALO_RS11315 PF08534 Redoxin SHALO_RS11325 PF02578 Multi-copper polyphenol oxidoreductase laccase SHALO_RS11330 PF00677 Lumazine binding domain SHALO_RS11335 PF00672 HAMP domain SHALO_RS11335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS11335 PF02743 Cache domain SHALO_RS11340 PF02626 Carboxyltransferase domain, subdomain A and B SHALO_RS11350 PF03746 LamB/YcsF family SHALO_RS11355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SHALO_RS11370 PF00072 Response regulator receiver domain SHALO_RS11375 PF08269 Cache domain SHALO_RS11375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS11380 PF01134 Glucose inhibited division protein A SHALO_RS11380 PF13932 GidA associated domain SHALO_RS11385 PF00355 Rieske [2Fe-2S] domain SHALO_RS11385 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_RS11390 PF00033 Cytochrome b/b6/petB SHALO_RS11390 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_RS11405 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SHALO_RS11410 PF00109 Beta-ketoacyl synthase, N-terminal domain SHALO_RS11410 PF02801 Beta-ketoacyl synthase, C-terminal domain SHALO_RS11415 PF00550 Phosphopantetheine attachment site SHALO_RS11425 PF01676 Metalloenzyme superfamily SHALO_RS11425 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SHALO_RS11430 PF00953 Glycosyl transferase family 4 SHALO_RS11430 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SHALO_RS11435 PF08245 Mur ligase middle domain SHALO_RS11445 PF02397 Bacterial sugar transferase SHALO_RS11450 PF01695 IstB-like ATP binding protein SHALO_RS11455 PF02796 Helix-turn-helix domain of resolvase SHALO_RS11455 PF00665 Integrase core domain SHALO_RS11465 PF01061 ABC-2 type transporter SHALO_RS11470 PF16363 GDP-mannose 4,6 dehydratase SHALO_RS11475 PF04321 RmlD substrate binding domain SHALO_RS11480 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SHALO_RS11485 PF00483 Nucleotidyl transferase SHALO_RS11490 PF16363 GDP-mannose 4,6 dehydratase SHALO_RS11495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS11495 PF01568 Molydopterin dinucleotide binding domain SHALO_RS11495 PF00384 Molybdopterin oxidoreductase SHALO_RS11505 PF13247 4Fe-4S dicluster domain SHALO_RS11510 PF08448 PAS fold SHALO_RS11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS11510 PF08447 PAS fold SHALO_RS11515 PF00072 Response regulator receiver domain SHALO_RS11515 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS11530 PF00563 EAL domain SHALO_RS11530 PF12792 CSS motif domain associated with EAL SHALO_RS11545 PF03649 Uncharacterised protein family (UPF0014) SHALO_RS11550 PF02785 Biotin carboxylase C-terminal domain SHALO_RS11550 PF00289 Biotin carboxylase, N-terminal domain SHALO_RS11550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_RS11565 PF01384 Phosphate transporter family SHALO_RS11570 PF00270 DEAD/DEAH box helicase SHALO_RS11570 PF00271 Helicase conserved C-terminal domain SHALO_RS11575 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SHALO_RS11600 PF02222 ATP-grasp domain SHALO_RS11605 PF00654 Voltage gated chloride channel SHALO_RS11615 PF00465 Iron-containing alcohol dehydrogenase SHALO_RS11630 PF00958 GMP synthase C terminal domain SHALO_RS11630 PF00117 Glutamine amidotransferase class-I SHALO_RS11630 PF03352 Methyladenine glycosylase SHALO_RS11630 PF13302 Acetyltransferase (GNAT) domain SHALO_RS11630 PF13673 Acetyltransferase (GNAT) domain SHALO_RS11640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_RS11645 PF05736 OprF membrane domain SHALO_RS11645 PF00691 OmpA family SHALO_RS11650 PF05552 Conserved TM helix SHALO_RS11650 PF00924 Mechanosensitive ion channel SHALO_RS11660 PF13419 Haloacid dehalogenase-like hydrolase SHALO_RS11665 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SHALO_RS11665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_RS11665 PF10371 Domain of unknown function SHALO_RS11665 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SHALO_RS11665 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SHALO_RS11670 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SHALO_RS11670 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SHALO_RS11695 PF02664 S-Ribosylhomocysteinase (LuxS) SHALO_RS11700 PF00375 Sodium:dicarboxylate symporter family SHALO_RS11705 PF01243 Pyridoxamine 5'-phosphate oxidase SHALO_RS11720 PF00529 HlyD membrane-fusion protein of T1SS SHALO_RS11720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS11725 PF00873 AcrB/AcrD/AcrF family SHALO_RS11730 PF02321 Outer membrane efflux protein SHALO_RS11735 PF07690 Major Facilitator Superfamily SHALO_RS11740 PF07690 Major Facilitator Superfamily SHALO_RS11745 PF07690 Major Facilitator Superfamily SHALO_RS11755 PF00999 Sodium/hydrogen exchanger family SHALO_RS11760 PF02562 PhoH-like protein SHALO_RS11785 PF04055 Radical SAM superfamily SHALO_RS11790 PF06508 Queuosine biosynthesis protein QueC SHALO_RS11795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS11795 PF08447 PAS fold SHALO_RS11795 PF08448 PAS fold SHALO_RS11800 PF02525 Flavodoxin-like fold SHALO_RS11805 PF01638 HxlR-like helix-turn-helix SHALO_RS11820 PF03061 Thioesterase superfamily SHALO_RS11825 PF00989 PAS fold SHALO_RS11825 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS11825 PF11808 Phosphate regulon sensor protein PhoR SHALO_RS11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS11830 PF00072 Response regulator receiver domain SHALO_RS11830 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS11835 PF01895 PhoU domain SHALO_RS11850 PF00672 HAMP domain SHALO_RS11850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS11850 PF17202 Single cache domain 3 SHALO_RS11855 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SHALO_RS11860 PF00672 HAMP domain SHALO_RS11860 PF17202 Single cache domain 3 SHALO_RS11860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS11865 PF12849 PBP superfamily domain SHALO_RS11870 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS11875 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS11880 PF00005 ABC transporter SHALO_RS11895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS11895 PF00672 HAMP domain SHALO_RS11895 PF02743 Cache domain SHALO_RS11915 PF04205 FMN-binding domain SHALO_RS11915 PF00890 FAD binding domain SHALO_RS11930 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SHALO_RS11935 PF00380 Ribosomal protein S9/S16 SHALO_RS11940 PF00572 Ribosomal protein L13 SHALO_RS11945 PF12705 PD-(D/E)XK nuclease superfamily SHALO_RS11945 PF00580 UvrD/REP helicase N-terminal domain SHALO_RS11945 PF13361 UvrD-like helicase C-terminal domain SHALO_RS11970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_RS11970 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SHALO_RS11985 PF00115 Cytochrome C and Quinol oxidase polypeptide I SHALO_RS11990 PF00072 Response regulator receiver domain SHALO_RS11990 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS11995 PF08448 PAS fold SHALO_RS11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS11995 PF08447 PAS fold SHALO_RS12005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SHALO_RS12005 PF00117 Glutamine amidotransferase class-I SHALO_RS12025 PF00709 Adenylosuccinate synthetase SHALO_RS12030 PF13393 Histidyl-tRNA synthetase SHALO_RS12035 PF00266 Aminotransferase class-V SHALO_RS12040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS12040 PF00672 HAMP domain SHALO_RS12040 PF02743 Cache domain SHALO_RS12045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS12045 PF00672 HAMP domain SHALO_RS12050 PF13419 Haloacid dehalogenase-like hydrolase SHALO_RS12055 PF02779 Transketolase, pyrimidine binding domain SHALO_RS12055 PF02780 Transketolase, C-terminal domain SHALO_RS12055 PF00456 Transketolase, thiamine diphosphate binding domain SHALO_RS12060 PF00348 Polyprenyl synthetase SHALO_RS12065 PF01471 Putative peptidoglycan binding domain SHALO_RS12065 PF03572 Peptidase family S41 SHALO_RS12065 PF13180 PDZ domain SHALO_RS12070 PF02575 YbaB/EbfC DNA-binding family SHALO_RS12075 PF02261 Aspartate decarboxylase SHALO_RS12080 PF02875 Mur ligase family, glutamate ligase domain SHALO_RS12080 PF08245 Mur ligase middle domain SHALO_RS12095 PF01196 Ribosomal protein L17 SHALO_RS12100 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SHALO_RS12100 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SHALO_RS12100 PF01000 RNA polymerase Rpb3/RpoA insert domain SHALO_RS12105 PF00163 Ribosomal protein S4/S9 N-terminal domain SHALO_RS12105 PF01479 S4 domain SHALO_RS12110 PF00411 Ribosomal protein S11 SHALO_RS12115 PF00416 Ribosomal protein S13/S18 SHALO_RS12120 PF00444 Ribosomal protein L36 SHALO_RS12125 PF01176 Translation initiation factor 1A / IF-1 SHALO_RS12130 PF00557 Metallopeptidase family M24 SHALO_RS12135 PF00344 SecY translocase SHALO_RS12140 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SHALO_RS12145 PF00333 Ribosomal protein S5, N-terminal domain SHALO_RS12145 PF03719 Ribosomal protein S5, C-terminal domain SHALO_RS12150 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SHALO_RS12155 PF00347 Ribosomal protein L6 SHALO_RS12160 PF00410 Ribosomal protein S8 SHALO_RS12165 PF00253 Ribosomal protein S14p/S29e SHALO_RS12170 PF00281 Ribosomal protein L5 SHALO_RS12170 PF00673 ribosomal L5P family C-terminus SHALO_RS12175 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SHALO_RS12175 PF00467 KOW motif SHALO_RS12180 PF00238 Ribosomal protein L14p/L23e SHALO_RS12185 PF00366 Ribosomal protein S17 SHALO_RS12190 PF00831 Ribosomal L29 protein SHALO_RS12195 PF00252 Ribosomal protein L16p/L10e SHALO_RS12200 PF07650 KH domain SHALO_RS12200 PF00189 Ribosomal protein S3, C-terminal domain SHALO_RS12205 PF00237 Ribosomal protein L22p/L17e SHALO_RS12210 PF00203 Ribosomal protein S19 SHALO_RS12215 PF03947 Ribosomal Proteins L2, C-terminal domain SHALO_RS12215 PF00181 Ribosomal Proteins L2, RNA binding domain SHALO_RS12220 PF00276 Ribosomal protein L23 SHALO_RS12225 PF00573 Ribosomal protein L4/L1 family SHALO_RS12230 PF00297 Ribosomal protein L3 SHALO_RS12235 PF00338 Ribosomal protein S10p/S20e SHALO_RS12250 PF01351 Ribonuclease HII SHALO_RS12255 PF03239 Iron permease FTR1 family SHALO_RS12260 PF10634 Fe2+ transport protein SHALO_RS12280 PF02687 FtsX-like permease family SHALO_RS12280 PF00005 ABC transporter SHALO_RS12280 PF12704 MacB-like periplasmic core domain SHALO_RS12300 PF07670 Nucleoside recognition SHALO_RS12300 PF07664 Ferrous iron transport protein B C terminus SHALO_RS12300 PF02421 Ferrous iron transport protein B SHALO_RS12305 PF01264 Chorismate synthase SHALO_RS12310 PF00035 Double-stranded RNA binding motif SHALO_RS12310 PF14622 Ribonuclease-III-like SHALO_RS12315 PF00075 RNase H SHALO_RS12325 PF01807 CHC2 zinc finger SHALO_RS12325 PF08275 DNA primase catalytic core, N-terminal domain SHALO_RS12325 PF16730 DnaG-primase C-terminal, helicase-binding domain SHALO_RS12325 PF13662 Toprim domain SHALO_RS12330 PF00764 Arginosuccinate synthase SHALO_RS12335 PF00072 Response regulator receiver domain SHALO_RS12345 PF00563 EAL domain SHALO_RS12345 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS12345 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS12350 PF00072 Response regulator receiver domain SHALO_RS12355 PF08447 PAS fold SHALO_RS12355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS12360 PF00072 Response regulator receiver domain SHALO_RS12360 PF01339 CheB methylesterase SHALO_RS12365 PF03975 CheD chemotactic sensory transduction SHALO_RS12370 PF00672 HAMP domain SHALO_RS12370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS12370 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS12375 PF01739 CheR methyltransferase, SAM binding domain SHALO_RS12375 PF03705 CheR methyltransferase, all-alpha domain SHALO_RS12380 PF09078 CheY binding SHALO_RS12380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS12380 PF01584 CheW-like domain SHALO_RS12380 PF02895 Signal transducing histidine kinase, homodimeric domain SHALO_RS12380 PF01627 Hpt domain SHALO_RS12390 PF00672 HAMP domain SHALO_RS12390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS12390 PF02203 Tar ligand binding domain homologue SHALO_RS12395 PF01584 CheW-like domain SHALO_RS12400 PF00072 Response regulator receiver domain SHALO_RS12425 PF00149 Calcineurin-like phosphoesterase SHALO_RS12425 PF02872 5'-nucleotidase, C-terminal domain SHALO_RS12480 PF02683 Cytochrome C biogenesis protein transmembrane region SHALO_RS12485 PF01966 HD domain SHALO_RS12545 PF07290 Protein of unknown function (DUF1449) SHALO_RS12550 PF15975 Flotillin SHALO_RS12550 PF01145 SPFH domain / Band 7 family SHALO_RS12620 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS12620 PF00593 TonB dependent receptor SHALO_RS12625 PF00072 Response regulator receiver domain SHALO_RS12625 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS12630 PF07568 Histidine kinase SHALO_RS12630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS12630 PF12282 Signal transduction histidine kinase SHALO_RS12635 PF04023 FeoA domain SHALO_RS12635 PF17910 FeoB cytosolic helical domain SHALO_RS12635 PF02421 Ferrous iron transport protein B SHALO_RS12635 PF07670 Nucleoside recognition SHALO_RS12635 PF07664 Ferrous iron transport protein B C terminus SHALO_RS12640 PF04023 FeoA domain SHALO_RS12650 PF00593 TonB dependent receptor SHALO_RS12650 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS12665 PF00756 Putative esterase SHALO_RS12665 PF11806 Domain of unknown function (DUF3327) SHALO_RS12670 PF00593 TonB dependent receptor SHALO_RS12670 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS12680 PF02472 Biopolymer transport protein ExbD/TolR SHALO_RS12685 PF01618 MotA/TolQ/ExbB proton channel family SHALO_RS12690 PF01545 Cation efflux family SHALO_RS12695 PF02659 Putative manganese efflux pump SHALO_RS12700 PF07690 Major Facilitator Superfamily SHALO_RS12710 PF00664 ABC transporter transmembrane region SHALO_RS12710 PF00005 ABC transporter SHALO_RS12715 PF00005 ABC transporter SHALO_RS12715 PF08021 Siderophore-interacting FAD-binding domain SHALO_RS12715 PF04954 Siderophore-interacting protein SHALO_RS12715 PF00664 ABC transporter transmembrane region SHALO_RS12720 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS12720 PF00593 TonB dependent receptor SHALO_RS12725 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS12725 PF00593 TonB dependent receptor SHALO_RS12730 PF12833 Helix-turn-helix domain SHALO_RS12730 PF06445 GyrI-like small molecule binding domain SHALO_RS12735 PF02311 AraC-like ligand binding domain SHALO_RS12735 PF12833 Helix-turn-helix domain SHALO_RS12740 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS12765 PF00005 ABC transporter SHALO_RS12770 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS12775 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS12780 PF13419 Haloacid dehalogenase-like hydrolase SHALO_RS12785 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SHALO_RS12795 PF03824 High-affinity nickel-transport protein SHALO_RS12800 PF03824 High-affinity nickel-transport protein SHALO_RS12810 PF00258 Flavodoxin SHALO_RS12820 PF01810 LysE type translocator SHALO_RS12825 PF01370 NAD dependent epimerase/dehydratase family SHALO_RS12825 PF08338 Domain of unknown function (DUF1731) SHALO_RS12840 PF12704 MacB-like periplasmic core domain SHALO_RS12840 PF02687 FtsX-like permease family SHALO_RS12840 PF00005 ABC transporter SHALO_RS12855 PF01810 LysE type translocator SHALO_RS12865 PF00563 EAL domain SHALO_RS12865 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS12865 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS12870 PF00892 EamA-like transporter family SHALO_RS12875 PF00072 Response regulator receiver domain SHALO_RS12875 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS12880 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS12880 PF08521 Two-component sensor kinase N-terminal SHALO_RS12880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS12885 PF08019 Phosphoethanolamine transferase EptA/EptB SHALO_RS12885 PF00884 Sulfatase SHALO_RS12895 PF12792 CSS motif domain associated with EAL SHALO_RS12895 PF00563 EAL domain SHALO_RS12910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS12910 PF08447 PAS fold SHALO_RS12910 PF08448 PAS fold SHALO_RS12915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS12915 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS12915 PF02743 Cache domain SHALO_RS12920 PF00072 Response regulator receiver domain SHALO_RS12920 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS12925 PF13426 PAS domain SHALO_RS12925 PF08447 PAS fold SHALO_RS12925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS12935 PF02001 Protein of unknown function DUF134 SHALO_RS12940 PF02673 Bacitracin resistance protein BacA SHALO_RS12945 PF13378 Enolase C-terminal domain-like SHALO_RS12945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SHALO_RS12950 PF03180 NLPA lipoprotein SHALO_RS12955 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS12960 PF00005 ABC transporter SHALO_RS12960 PF09383 NIL domain SHALO_RS12965 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SHALO_RS12970 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SHALO_RS12975 PF01869 BadF/BadG/BcrA/BcrD ATPase family SHALO_RS12995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS12995 PF00529 HlyD membrane-fusion protein of T1SS SHALO_RS13000 PF00664 ABC transporter transmembrane region SHALO_RS13000 PF00005 ABC transporter SHALO_RS13000 PF03412 Peptidase C39 family SHALO_RS13035 PF01497 Periplasmic binding protein SHALO_RS13040 PF05958 tRNA (Uracil-5-)-methyltransferase SHALO_RS13040 PF01938 TRAM domain SHALO_RS13045 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS13045 PF00593 TonB dependent receptor SHALO_RS13050 PF00206 Lyase SHALO_RS13050 PF10415 Fumarase C C-terminus SHALO_RS13055 PF00206 Lyase SHALO_RS13055 PF10415 Fumarase C C-terminus SHALO_RS13060 PF03605 Anaerobic c4-dicarboxylate membrane transporter SHALO_RS13065 PF17763 Glutaminase/Asparaginase C-terminal domain SHALO_RS13065 PF00710 Asparaginase, N-terminal SHALO_RS13070 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS13070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS13075 PF00072 Response regulator receiver domain SHALO_RS13075 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS13085 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_RS13090 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS13100 PF13784 Fic/DOC family N-terminal SHALO_RS13100 PF02661 Fic/DOC family SHALO_RS13115 PF00005 ABC transporter SHALO_RS13130 PF05573 NosL SHALO_RS13140 PF05140 ResB-like family SHALO_RS13140 PF01578 Cytochrome C assembly protein SHALO_RS13145 PF03916 Polysulphide reductase, NrfD SHALO_RS13150 PF00037 4Fe-4S binding domain SHALO_RS13150 PF13247 4Fe-4S dicluster domain SHALO_RS13155 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SHALO_RS13155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_RS13165 PF08448 PAS fold SHALO_RS13165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS13165 PF08447 PAS fold SHALO_RS13170 PF00072 Response regulator receiver domain SHALO_RS13170 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS13175 PF02743 Cache domain SHALO_RS13175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS13175 PF00672 HAMP domain SHALO_RS13185 PF01638 HxlR-like helix-turn-helix SHALO_RS13190 PF02525 Flavodoxin-like fold SHALO_RS13195 PF11799 impB/mucB/samB family C-terminal domain SHALO_RS13195 PF11798 IMS family HHH motif SHALO_RS13195 PF00817 impB/mucB/samB family SHALO_RS13220 PF02472 Biopolymer transport protein ExbD/TolR SHALO_RS13225 PF01618 MotA/TolQ/ExbB proton channel family SHALO_RS13230 PF00586 AIR synthase related protein, N-terminal domain SHALO_RS13230 PF02769 AIR synthase related protein, C-terminal domain SHALO_RS13235 PF01206 Sulfurtransferase TusA SHALO_RS13245 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_RS13255 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS13255 PF05231 MASE1 SHALO_RS13255 PF08447 PAS fold SHALO_RS13255 PF08448 PAS fold SHALO_RS13255 PF13426 PAS domain SHALO_RS13255 PF00563 EAL domain SHALO_RS13265 PF07690 Major Facilitator Superfamily SHALO_RS13285 PF00005 ABC transporter SHALO_RS13290 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS13295 PF12849 PBP superfamily domain SHALO_RS13305 PF02634 FdhD/NarQ family SHALO_RS13315 PF13247 4Fe-4S dicluster domain SHALO_RS13320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS13320 PF00384 Molybdopterin oxidoreductase SHALO_RS13320 PF01568 Molydopterin dinucleotide binding domain SHALO_RS13325 PF12838 4Fe-4S dicluster domain SHALO_RS13325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS13325 PF00384 Molybdopterin oxidoreductase SHALO_RS13325 PF01568 Molydopterin dinucleotide binding domain SHALO_RS13325 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_RS13345 PF00005 ABC transporter SHALO_RS13350 PF01032 FecCD transport family SHALO_RS13355 PF01497 Periplasmic binding protein SHALO_RS13360 PF00296 Luciferase-like monooxygenase SHALO_RS13375 PF02472 Biopolymer transport protein ExbD/TolR SHALO_RS13380 PF01618 MotA/TolQ/ExbB proton channel family SHALO_RS13385 PF03459 TOBE domain SHALO_RS13385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_RS13400 PF01497 Periplasmic binding protein SHALO_RS13410 PF13649 Methyltransferase domain SHALO_RS13415 PF03459 TOBE domain SHALO_RS13420 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SHALO_RS13430 PF12833 Helix-turn-helix domain SHALO_RS13430 PF02311 AraC-like ligand binding domain SHALO_RS13445 PF12833 Helix-turn-helix domain SHALO_RS13445 PF02311 AraC-like ligand binding domain SHALO_RS13455 PF13247 4Fe-4S dicluster domain SHALO_RS13460 PF00384 Molybdopterin oxidoreductase SHALO_RS13460 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_RS13460 PF01568 Molydopterin dinucleotide binding domain SHALO_RS13460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS13460 PF12838 4Fe-4S dicluster domain SHALO_RS13465 PF00384 Molybdopterin oxidoreductase SHALO_RS13465 PF01568 Molydopterin dinucleotide binding domain SHALO_RS13495 PF00989 PAS fold SHALO_RS13495 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS13495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS13500 PF00072 Response regulator receiver domain SHALO_RS13500 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS13505 PF03841 L-seryl-tRNA selenium transferase SHALO_RS13510 PF00009 Elongation factor Tu GTP binding domain SHALO_RS13510 PF03144 Elongation factor Tu domain 2 SHALO_RS13510 PF09107 Elongation factor SelB, winged helix SHALO_RS13510 PF09105 Elongation factor SelB, winged helix SHALO_RS13510 PF09106 Elongation factor SelB, winged helix SHALO_RS13515 PF02754 Cysteine-rich domain SHALO_RS13520 PF13183 4Fe-4S dicluster domain SHALO_RS13520 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_RS13525 PF02910 Fumarate reductase flavoprotein C-term SHALO_RS13525 PF00890 FAD binding domain SHALO_RS13535 PF01047 MarR family SHALO_RS13540 PF04264 YceI-like domain SHALO_RS13545 PF17954 Quercetinase C-terminal cupin domain SHALO_RS13545 PF02678 Pirin SHALO_RS13580 PF00072 Response regulator receiver domain SHALO_RS13580 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS13590 PF01965 DJ-1/PfpI family SHALO_RS13615 PF00221 Aromatic amino acid lyase SHALO_RS13640 PF16177 Acetyl-coenzyme A synthetase N-terminus SHALO_RS13640 PF13193 AMP-binding enzyme C-terminal domain SHALO_RS13640 PF00501 AMP-binding enzyme SHALO_RS13655 PF12697 Alpha/beta hydrolase family SHALO_RS13670 PF02801 Beta-ketoacyl synthase, C-terminal domain SHALO_RS13670 PF00109 Beta-ketoacyl synthase, N-terminal domain SHALO_RS13675 PF00550 Phosphopantetheine attachment site SHALO_RS13680 PF00271 Helicase conserved C-terminal domain SHALO_RS13680 PF00270 DEAD/DEAH box helicase SHALO_RS13695 PF01810 LysE type translocator SHALO_RS13715 PF01841 Transglutaminase-like superfamily SHALO_RS13725 PF02086 D12 class N6 adenine-specific DNA methyltransferase SHALO_RS13730 PF00072 Response regulator receiver domain SHALO_RS13735 PF01425 Amidase SHALO_RS13740 PF01425 Amidase SHALO_RS13745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_RS13745 PF00289 Biotin carboxylase, N-terminal domain SHALO_RS13745 PF02785 Biotin carboxylase C-terminal domain SHALO_RS13755 PF09347 Domain of unknown function (DUF1989) SHALO_RS13760 PF08402 TOBE domain SHALO_RS13760 PF00005 ABC transporter SHALO_RS13765 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS13780 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS13780 PF00072 Response regulator receiver domain SHALO_RS13790 PF00593 TonB dependent receptor SHALO_RS13790 PF07715 TonB-dependent Receptor Plug Domain SHALO_RS13790 PF07660 Secretin and TonB N terminus short domain SHALO_RS13805 PF00072 Response regulator receiver domain SHALO_RS13805 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS13810 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS13810 PF02702 Osmosensitive K+ channel His kinase sensor domain SHALO_RS13810 PF13493 Domain of unknown function (DUF4118) SHALO_RS13815 PF02669 K+-transporting ATPase, c chain SHALO_RS13825 PF03814 Potassium-transporting ATPase A subunit SHALO_RS13835 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SHALO_RS13840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS13840 PF00672 HAMP domain SHALO_RS13845 PF00106 short chain dehydrogenase SHALO_RS13855 PF16653 Saccharopine dehydrogenase C-terminal domain SHALO_RS13855 PF03435 Saccharopine dehydrogenase NADP binding domain SHALO_RS13860 PF01725 Ham1 family SHALO_RS13865 PF06725 3D domain SHALO_RS13865 PF03562 MltA specific insert domain SHALO_RS13870 PF07690 Major Facilitator Superfamily SHALO_RS13875 PF09335 SNARE associated Golgi protein SHALO_RS13895 PF00994 Probable molybdopterin binding domain SHALO_RS13895 PF03453 MoeA N-terminal region (domain I and II) SHALO_RS13895 PF03454 MoeA C-terminal region (domain IV) SHALO_RS13900 PF02391 MoaE protein SHALO_RS13910 PF04324 BFD-like [2Fe-2S] binding domain SHALO_RS13910 PF01106 NifU-like domain SHALO_RS13910 PF01592 NifU-like N terminal domain SHALO_RS13915 PF00266 Aminotransferase class-V SHALO_RS13920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_RS13920 PF18269 T3SS EscN ATPase C-terminal domain SHALO_RS13925 PF01227 GTP cyclohydrolase I SHALO_RS13930 PF05697 Bacterial trigger factor protein (TF) SHALO_RS13930 PF05698 Bacterial trigger factor protein (TF) C-terminus SHALO_RS13930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_RS13935 PF00574 Clp protease SHALO_RS13945 PF01327 Polypeptide deformylase SHALO_RS13950 PF13335 Magnesium chelatase, subunit ChlI C-terminal SHALO_RS13950 PF01078 Magnesium chelatase, subunit ChlI SHALO_RS13955 PF01256 Carbohydrate kinase SHALO_RS13955 PF03853 YjeF-related protein N-terminus SHALO_RS13960 PF00551 Formyl transferase SHALO_RS13965 PF05690 Thiazole biosynthesis protein ThiG SHALO_RS14020 PF02613 Nitrate reductase delta subunit SHALO_RS14030 PF13247 4Fe-4S dicluster domain SHALO_RS14030 PF00037 4Fe-4S binding domain SHALO_RS14035 PF01568 Molydopterin dinucleotide binding domain SHALO_RS14035 PF00384 Molybdopterin oxidoreductase SHALO_RS14035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS14055 PF00072 Response regulator receiver domain SHALO_RS14055 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS14070 PF00171 Aldehyde dehydrogenase family SHALO_RS14085 PF01842 ACT domain SHALO_RS14085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_RS14085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_RS14105 PF03824 High-affinity nickel-transport protein SHALO_RS14110 PF17674 HHH domain SHALO_RS14110 PF09371 Tex-like protein N-terminal domain SHALO_RS14110 PF00575 S1 RNA binding domain SHALO_RS14110 PF16921 Tex protein YqgF-like domain SHALO_RS14125 PF00881 Nitroreductase family SHALO_RS14135 PF00939 Sodium:sulfate symporter transmembrane region SHALO_RS14140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_RS14140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_RS14160 PF00005 ABC transporter SHALO_RS14165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS14170 PF09209 Tetracyclin repressor-like, C-terminal domain SHALO_RS14170 PF00440 Bacterial regulatory proteins, tetR family SHALO_RS14205 PF00890 FAD binding domain SHALO_RS14205 PF04205 FMN-binding domain SHALO_RS14230 PF13673 Acetyltransferase (GNAT) domain SHALO_RS14235 PF03358 NADPH-dependent FMN reductase SHALO_RS14245 PF00873 AcrB/AcrD/AcrF family SHALO_RS14250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_RS14250 PF00529 HlyD membrane-fusion protein of T1SS SHALO_RS14275 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS14275 PF00072 Response regulator receiver domain SHALO_RS14280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS14285 PF08402 TOBE domain SHALO_RS14285 PF00005 ABC transporter SHALO_RS14290 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_RS14295 PF13416 Bacterial extracellular solute-binding protein SHALO_RS14300 PF00080 Copper/zinc superoxide dismutase (SODC) SHALO_RS14310 PF01507 Phosphoadenosine phosphosulfate reductase family SHALO_RS14315 PF01507 Phosphoadenosine phosphosulfate reductase family SHALO_RS14320 PF00009 Elongation factor Tu GTP binding domain SHALO_RS14330 PF00899 ThiF family SHALO_RS14340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SHALO_RS14340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SHALO_RS14345 PF14824 Sirohaem biosynthesis protein central SHALO_RS14345 PF10414 Sirohaem synthase dimerisation region SHALO_RS14345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_RS14350 PF01053 Cys/Met metabolism PLP-dependent enzyme SHALO_RS14375 PF00486 Transcriptional regulatory protein, C terminal SHALO_RS14375 PF00072 Response regulator receiver domain SHALO_RS14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS14380 PF00672 HAMP domain SHALO_RS14380 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS14390 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS14415 PF11412 Disulphide bond corrector protein DsbC SHALO_RS14415 PF02683 Cytochrome C biogenesis protein transmembrane region SHALO_RS14420 PF01451 Low molecular weight phosphotyrosine protein phosphatase SHALO_RS14425 PF02040 Arsenical pump membrane protein SHALO_RS14430 PF01451 Low molecular weight phosphotyrosine protein phosphatase SHALO_RS14435 PF00355 Rieske [2Fe-2S] domain SHALO_RS14440 PF18465 Rieske 3Fe-4S SHALO_RS14440 PF01568 Molydopterin dinucleotide binding domain SHALO_RS14440 PF00384 Molybdopterin oxidoreductase SHALO_RS14455 PF00005 ABC transporter SHALO_RS14455 PF12704 MacB-like periplasmic core domain SHALO_RS14455 PF02687 FtsX-like permease family SHALO_RS14460 PF00005 ABC transporter SHALO_RS14465 PF02954 Bacterial regulatory protein, Fis family SHALO_RS14465 PF00158 Sigma-54 interaction domain SHALO_RS14465 PF00072 Response regulator receiver domain SHALO_RS14470 PF13426 PAS domain SHALO_RS14470 PF08448 PAS fold SHALO_RS14470 PF00512 His Kinase A (phospho-acceptor) domain SHALO_RS14470 PF00072 Response regulator receiver domain SHALO_RS14470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_RS14485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS14485 PF00384 Molybdopterin oxidoreductase SHALO_RS14485 PF01568 Molydopterin dinucleotide binding domain SHALO_RS14490 PF13247 4Fe-4S dicluster domain SHALO_RS14495 PF12849 PBP superfamily domain SHALO_RS14500 PF00672 HAMP domain SHALO_RS14500 PF02743 Cache domain SHALO_RS14500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_RS14510 PF03741 Integral membrane protein TerC family SHALO_RS14515 PF02621 Menaquinone biosynthesis SHALO_RS14520 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SHALO_RS14520 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SHALO_RS14530 PF00390 Malic enzyme, N-terminal domain SHALO_RS14530 PF01515 Phosphate acetyl/butaryl transferase SHALO_RS14530 PF03949 Malic enzyme, NAD binding domain SHALO_RS14535 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_RS14545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_RS14545 PF00289 Biotin carboxylase, N-terminal domain SHALO_RS14545 PF02785 Biotin carboxylase C-terminal domain SHALO_RS14550 PF00364 Biotin-requiring enzyme SHALO_RS14555 PF00692 dUTPase SHALO_RS14570 PF10672 S-adenosylmethionine-dependent methyltransferase SHALO_RS14570 PF17785 PUA-like domain SHALO_RS14585 PF07196 Flagellin hook IN motif SHALO_RS14585 PF00669 Bacterial flagellin N-terminal helical region SHALO_RS14585 PF00700 Bacterial flagellin C-terminal helical region SHALO_RS14590 PF02719 Polysaccharide biosynthesis protein SHALO_RS14595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_RS14600 PF02348 Cytidylyltransferase SHALO_RS14615 PF08666 SAF domain SHALO_RS14615 PF03102 NeuB family SHALO_RS14620 PF01370 NAD dependent epimerase/dehydratase family SHALO_RS14635 PF13537 Glutamine amidotransferase domain SHALO_RS14635 PF00733 Asparagine synthase SHALO_RS14650 PF05050 Methyltransferase FkbM domain SHALO_RS14660 PF16363 GDP-mannose 4,6 dehydratase SHALO_RS14675 PF13537 Glutamine amidotransferase domain SHALO_RS14675 PF00733 Asparagine synthase SHALO_RS14680 PF01380 SIS domain SHALO_RS14705 PF00700 Bacterial flagellin C-terminal helical region SHALO_RS14705 PF00669 Bacterial flagellin N-terminal helical region SHALO_RS14705 PF07196 Flagellin hook IN motif SHALO_RS14710 PF01396 Topoisomerase DNA binding C4 zinc finger SHALO_RS14710 PF01751 Toprim domain SHALO_RS14710 PF01131 DNA topoisomerase SHALO_RS14715 PF04055 Radical SAM superfamily SHALO_RS14715 PF06968 Biotin and Thiamin Synthesis associated domain SHALO_RS14720 PF00285 Citrate synthase, C-terminal domain SHALO_RS14735 PF00113 Enolase, C-terminal TIM barrel domain SHALO_RS14735 PF03952 Enolase, N-terminal domain SHALO_RS14740 PF00154 recA bacterial DNA recombination protein SHALO_RS14745 PF02621 Menaquinone biosynthesis SHALO_RS14750 PF01313 Bacterial export proteins, family 3 SHALO_RS14755 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SHALO_RS14760 PF00814 Glycoprotease family SHALO_RS14770 PF03707 Bacterial signalling protein N terminal repeat SHALO_RS14770 PF00990 Diguanylate cyclase, GGDEF domain SHALO_RS14770 PF00563 EAL domain SHALO_RS14790 PF00149 Calcineurin-like phosphoesterase SHALO_RS14795 PF01235 Sodium:alanine symporter family SHALO_RS14800 PF00860 Permease family SHALO_RS14805 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SHALO_RS14805 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SHALO_RS14805 PF13288 DXP reductoisomerase C-terminal domain SHALO_RS14820 PF05670 NFACT protein RNA binding domain SHALO_RS14825 PF02595 Glycerate kinase family SHALO_RS14830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SHALO_RS14830 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SHALO_RS14850 PF06628 Catalase-related immune-responsive SHALO_RS14850 PF00199 Catalase SHALO_RS14855 PF13545 Crp-like helix-turn-helix domain SHALO_RS14855 PF00027 Cyclic nucleotide-binding domain SHALO_RS14865 PF00330 Aconitase family (aconitate hydratase) SHALO_RS14870 PF12804 MobA-like NTP transferase domain SHALO_RS14895 PF02253 Phospholipase A1 SHALO_RS14900 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SHALO_RS14905 PF01967 MoaC family SHALO_RS14950 PF13247 4Fe-4S dicluster domain SHALO_RS14955 PF01568 Molydopterin dinucleotide binding domain SHALO_RS14955 PF00384 Molybdopterin oxidoreductase SHALO_RS14960 PF00581 Rhodanese-like domain SHALO_RS14970 PF10609 NUBPL iron-transfer P-loop NTPase SHALO_RS15015 PF01027 Inhibitor of apoptosis-promoting Bax1 SHALO_RS15030 PF13247 4Fe-4S dicluster domain SHALO_RS15035 PF01568 Molydopterin dinucleotide binding domain SHALO_RS15035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS15035 PF00384 Molybdopterin oxidoreductase SHALO_RS15045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_RS15045 PF03466 LysR substrate binding domain SHALO_RS15065 PF00037 4Fe-4S binding domain SHALO_RS15065 PF13247 4Fe-4S dicluster domain SHALO_RS15070 PF01568 Molydopterin dinucleotide binding domain SHALO_RS15070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_RS15070 PF00384 Molybdopterin oxidoreductase SHALO_RS15070 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_RS15075 PF13847 Methyltransferase domain SHALO_RS15080 PF00211 Adenylate and Guanylate cyclase catalytic domain SHALO_RS15085 PF01966 HD domain SHALO_RS15090 PF03840 Preprotein translocase SecG subunit SHALO_RS15100 PF01765 Ribosome recycling factor SHALO_RS15105 PF00156 Phosphoribosyl transferase domain SHALO_RS15130 PF04011 LemA family SHALO_RS15135 PF03144 Elongation factor Tu domain 2 SHALO_RS15135 PF00679 Elongation factor G C-terminus SHALO_RS15135 PF00009 Elongation factor Tu GTP binding domain SHALO_RS15150 PF00460 Flagella basal body rod protein SHALO_RS15150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_RS15155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_RS15155 PF00460 Flagella basal body rod protein SHALO_RS15155 PF07196 Flagellin hook IN motif SHALO_RS15155 PF07559 Flagellar basal body protein FlaE SHALO_RS15170 PF02511 Thymidylate synthase complementing protein SHALO_RS15175 PF02075 Crossover junction endodeoxyribonuclease RuvC