locus-tag	class	description
SJPD1_RS00010	COG0592	DNA-directed DNA polymerase activity
SJPD1_RS00015	COG0187	DNA topoisomerase II activity
SJPD1_RS00020	COG5001	Diguanylate cyclase
SJPD1_RS00025	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
SJPD1_RS00040	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
SJPD1_RS00050	COG2814	Major facilitator Superfamily
SJPD1_RS00065	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
SJPD1_RS00075	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
SJPD1_RS00080	COG0066	3-isopropylmalate dehydratase activity
SJPD1_RS00100	COG0840	transmembrane signaling receptor activity
SJPD1_RS00120	COG1335	isochorismatase
SJPD1_RS00140	COG3708	Transcriptional regulator
SJPD1_RS00140	COG2207	Transcriptional regulator
SJPD1_RS00150	COG1355	regulation of microtubule-based process
SJPD1_RS00160	COG2078	PFAM AMMECR1 domain protein
SJPD1_RS00195	COG3150	esterase
SJPD1_RS00205	COG3383	formate dehydrogenase (NAD+) activity
SJPD1_RS00215	COG4974	Belongs to the 'phage' integrase family
SJPD1_RS00265	COG3093	addiction module antidote protein HigA
SJPD1_RS00375	COG0129	dihydroxy-acid dehydratase activity
SJPD1_RS00380	COG2095	MarC family integral membrane protein
SJPD1_RS00405	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
SJPD1_RS00410	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SJPD1_RS00415	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SJPD1_RS00425	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
SJPD1_RS00425	COG1328	CTP reductase activity
SJPD1_RS00430	COG1794	racemase activity, acting on amino acids and derivatives
SJPD1_RS00435	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SJPD1_RS00440	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
SJPD1_RS00445	COG0564	pseudouridine synthase activity
SJPD1_RS00450	COG0179	Fumarylacetoacetate (FAA) hydrolase
SJPD1_RS00455	COG0820	rRNA (adenine-C2-)-methyltransferase activity
SJPD1_RS00465	COG0107	imidazoleglycerol-phosphate synthase activity
SJPD1_RS00475	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
SJPD1_RS00480	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
SJPD1_RS00480	COG0517	IMP dehydrogenase activity
SJPD1_RS00485	COG1187	pseudouridine synthase activity
SJPD1_RS00490	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
SJPD1_RS00490	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
SJPD1_RS00500	COG2257	FlhB HrpN YscU SpaS Family
SJPD1_RS00520	COG0237	dephospho-CoA kinase activity
SJPD1_RS00525	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
SJPD1_RS00535	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
SJPD1_RS00540	COG0268	Binds directly to 16S ribosomal RNA
SJPD1_RS00545	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
SJPD1_RS00560	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
SJPD1_RS00565	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
SJPD1_RS00570	COG0291	Belongs to the bacterial ribosomal protein bL35 family
SJPD1_RS00575	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
SJPD1_RS00580	COG0348	domain, Protein
SJPD1_RS00590	COG0828	Belongs to the bacterial ribosomal protein bS21 family
SJPD1_RS00605	COG0754	glutathionylspermidine amidase activity
SJPD1_RS00610	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
SJPD1_RS00655	COG0642	Histidine kinase
SJPD1_RS00660	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS00680	COG1127	ABC transporter
SJPD1_RS00685	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
SJPD1_RS00700	COG2095	MarC family integral membrane protein
SJPD1_RS00705	COG0840	transmembrane signaling receptor activity
SJPD1_RS00715	COG0784	Response regulator, receiver
SJPD1_RS00715	COG3437	response regulator, receiver
SJPD1_RS00735	COG5002	protein histidine kinase activity
SJPD1_RS00745	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
SJPD1_RS00755	COG0004	ammonium transporteR
SJPD1_RS00760	COG0667	Aldo Keto reductase
SJPD1_RS00770	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS00785	COG0765	amino acid transport
SJPD1_RS00825	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
SJPD1_RS00835	COG0318	PFAM AMP-dependent synthetase and ligase
SJPD1_RS00840	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SJPD1_RS00845	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS00850	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS00855	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS00860	COG0649	NAD binding
SJPD1_RS00880	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
SJPD1_RS00885	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS00890	COG0839	Belongs to the complex I subunit 6 family
SJPD1_RS00895	COG0713	ATP synthesis coupled electron transport
SJPD1_RS00900	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
SJPD1_RS00905	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS00910	COG1007	ATP synthesis coupled electron transport
SJPD1_RS00920	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_RS00925	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
SJPD1_RS00945	COG0840	transmembrane signaling receptor activity
SJPD1_RS00955	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
SJPD1_RS00960	COG0303	'Molybdopterin
SJPD1_RS00970	COG1385	rRNA (uridine-N3-)-methyltransferase activity
SJPD1_RS00975	COG0254	rRNA binding
SJPD1_RS00980	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
SJPD1_RS00985	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
SJPD1_RS01000	COG0436	Aminotransferase
SJPD1_RS01005	COG0460	homoserine dehydrogenase
SJPD1_RS01010	COG0792	nuclease activity
SJPD1_RS01015	COG3118	belongs to the thioredoxin family
SJPD1_RS01020	COG0492	ferredoxin-NADP+ reductase activity
SJPD1_RS01025	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
SJPD1_RS01030	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
SJPD1_RS01035	COG1242	4 iron, 4 sulfur cluster binding
SJPD1_RS01050	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
SJPD1_RS01050	COG0140	phosphoribosyl-ATP diphosphatase activity
SJPD1_RS01065	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_RS01070	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
SJPD1_RS01080	COG2205	protein histidine kinase activity
SJPD1_RS01080	COG2770	Histidine kinase
SJPD1_RS01085	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS01095	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
SJPD1_RS01100	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
SJPD1_RS01105	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SJPD1_RS01110	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
SJPD1_RS01125	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
SJPD1_RS01145	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
SJPD1_RS01150	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
SJPD1_RS01155	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SJPD1_RS01160	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
SJPD1_RS01165	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
SJPD1_RS01175	COG0835	chemotaxis
SJPD1_RS01175	COG0784	Response regulator, receiver
SJPD1_RS01185	COG0835	chemotaxis
SJPD1_RS01200	COG0560	Phosphoserine phosphatase
SJPD1_RS01220	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
SJPD1_RS01235	COG0193	aminoacyl-tRNA hydrolase activity
SJPD1_RS01245	COG0019	diaminopimelate decarboxylase activity
SJPD1_RS01250	COG0077	Prephenate dehydratase
SJPD1_RS01250	COG1605	Chorismate mutase
SJPD1_RS01255	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
SJPD1_RS01265	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_RS01280	COG0735	belongs to the Fur family
SJPD1_RS01285	COG0450	alkyl hydroperoxide reductase
SJPD1_RS01300	COG0105	UTP biosynthetic process
SJPD1_RS01310	COG0333	Belongs to the bacterial ribosomal protein bL32 family
SJPD1_RS01315	COG0416	fatty acid biosynthetic process
SJPD1_RS01320	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
SJPD1_RS01325	COG0714	Associated with various cellular activities
SJPD1_RS01345	COG2304	oxidoreductase activity
SJPD1_RS01355	COG0287	Prephenate dehydrogenase
SJPD1_RS01360	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
SJPD1_RS01370	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_RS01380	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS01400	COG0157	Belongs to the NadC ModD family
SJPD1_RS01405	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
SJPD1_RS01420	COG0850	regulation of cytokinetic process
SJPD1_RS01425	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
SJPD1_RS01435	COG0083	homoserine kinase activity
SJPD1_RS01445	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
SJPD1_RS01455	COG0779	Required for maturation of 30S ribosomal subunits
SJPD1_RS01460	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SJPD1_RS01460	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SJPD1_RS01475	COG5001	Diguanylate cyclase
SJPD1_RS01485	COG5002	protein histidine kinase activity
SJPD1_RS01500	COG3258	Cytochrome c
SJPD1_RS01510	COG1242	4 iron, 4 sulfur cluster binding
SJPD1_RS01515	COG0243	molybdopterin cofactor binding
SJPD1_RS01520	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS01525	COG3301	Polysulphide reductase, NrfD
SJPD1_RS01530	COG3287	FIST C domain
SJPD1_RS01530	COG2200	EAL domain
SJPD1_RS01530	COG2199	diguanylate cyclase activity
SJPD1_RS01540	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS01545	COG3301	Polysulphide reductase, NrfD
SJPD1_RS01550	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS01555	COG5002	protein histidine kinase activity
SJPD1_RS01565	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SJPD1_RS01585	COG0848	biopolymer transport protein
SJPD1_RS01590	COG0811	peptide transport
SJPD1_RS01595	COG1227	inorganic diphosphatase activity
SJPD1_RS01615	COG1570	exodeoxyribonuclease VII activity
SJPD1_RS01635	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
SJPD1_RS01645	COG2207	Transcriptional regulator
SJPD1_RS01650	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
SJPD1_RS01655	COG0583	DNA-binding transcription factor activity
SJPD1_RS01660	COG2855	membrane
SJPD1_RS01665	COG0386	Belongs to the glutathione peroxidase family
SJPD1_RS01670	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
SJPD1_RS01680	COG0402	S-adenosylhomocysteine deaminase activity
SJPD1_RS01685	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
SJPD1_RS01690	COG0006	proline dipeptidase activity
SJPD1_RS01695	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
SJPD1_RS01700	COG1419	protein localization to endoplasmic reticulum
SJPD1_RS01705	COG0455	bacterial-type flagellum organization
SJPD1_RS01715	COG1191	sigma factor activity
SJPD1_RS01720	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_RS01725	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_RS01725	COG1776	CheC inhibitor of MCP methylation
SJPD1_RS01740	COG0463	Glycosyl transferase, family 2
SJPD1_RS01750	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
SJPD1_RS01770	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
SJPD1_RS01780	COG1040	competence protein
SJPD1_RS01815	COG2204	response regulator
SJPD1_RS01820	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
SJPD1_RS01830	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
SJPD1_RS01835	COG0731	radical SAM domain protein
SJPD1_RS01845	COG2358	TRAP transporter, solute receptor (TAXI family
SJPD1_RS01855	COG0582	viral genome integration into host DNA
SJPD1_RS01860	COG1002	Type II restriction enzyme, methylase subunits
SJPD1_RS01880	COG3177	Filamentation induced by cAMP protein fic
SJPD1_RS01885	COG1061	Type III restriction enzyme res subunit
SJPD1_RS01890	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
SJPD1_RS01940	COG1464	Belongs to the NlpA lipoprotein family
SJPD1_RS01945	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
SJPD1_RS01950	COG2011	ABC-type metal ion transport system permease component
SJPD1_RS01955	COG0306	phosphate transporter
SJPD1_RS01960	COG0039	L-malate dehydrogenase activity
SJPD1_RS01965	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
SJPD1_RS01975	COG1834	amidinotransferase
SJPD1_RS01980	COG2207	Transcriptional regulator
SJPD1_RS01980	COG3708	Transcriptional regulator
SJPD1_RS01985	COG1053	succinate dehydrogenase
SJPD1_RS02025	COG3287	FIST C domain
SJPD1_RS02025	COG2200	EAL domain
SJPD1_RS02025	COG2199	diguanylate cyclase activity
SJPD1_RS02040	COG3118	belongs to the thioredoxin family
SJPD1_RS02050	COG4336	lyase activity
SJPD1_RS02075	COG4628	conserved protein (DUF2132)
SJPD1_RS02080	COG4221	oxidoreductase activity
SJPD1_RS02090	COG0683	leucine binding
SJPD1_RS02120	COG3022	response to hydroperoxide
SJPD1_RS02145	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
SJPD1_RS02150	COG0267	Belongs to the bacterial ribosomal protein bL33 family
SJPD1_RS02165	COG0250	Participates in transcription elongation, termination and antitermination
SJPD1_RS02170	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
SJPD1_RS02175	COG0081	regulation of translation
SJPD1_RS02180	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
SJPD1_RS02185	COG0222	ribosome binding
SJPD1_RS02190	COG0085	RNA polymerase activity
SJPD1_RS02195	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
SJPD1_RS02200	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
SJPD1_RS02210	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
SJPD1_RS02220	COG0697	spore germination
SJPD1_RS02225	COG0697	spore germination
SJPD1_RS02230	COG0656	L-ascorbic acid biosynthetic process
SJPD1_RS02240	COG0471	metal ion transport
SJPD1_RS02245	COG0534	Mate efflux family protein
SJPD1_RS02260	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS02265	COG0747	negative chemotaxis
SJPD1_RS02275	COG0840	transmembrane signaling receptor activity
SJPD1_RS02280	COG0840	transmembrane signaling receptor activity
SJPD1_RS02290	COG1034	ATP synthesis coupled electron transport
SJPD1_RS02295	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
SJPD1_RS02300	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS02305	COG0839	Belongs to the complex I subunit 6 family
SJPD1_RS02310	COG0713	ATP synthesis coupled electron transport
SJPD1_RS02320	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS02325	COG1007	ATP synthesis coupled electron transport
SJPD1_RS02355	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
SJPD1_RS02360	COG0649	NAD binding
SJPD1_RS02360	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS02365	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS02370	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS02385	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
SJPD1_RS02405	COG0357	Ribosomal RNA small subunit methyltransferase G
SJPD1_RS02415	COG0840	transmembrane signaling receptor activity
SJPD1_RS02415	COG3290	protein histidine kinase activity
SJPD1_RS02425	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
SJPD1_RS02430	COG1970	mechanosensitive ion channel activity
SJPD1_RS02440	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
SJPD1_RS02445	COG0113	porphobilinogen synthase activity
SJPD1_RS02450	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
SJPD1_RS02460	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SJPD1_RS02465	COG0247	lactate metabolic process
SJPD1_RS02480	COG3012	SEC-C Motif Domain Protein
SJPD1_RS02495	COG3706	GGDEF domain
SJPD1_RS02500	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
SJPD1_RS02510	COG1053	succinate dehydrogenase
SJPD1_RS02515	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
SJPD1_RS02525	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
SJPD1_RS02530	COG0628	permease
SJPD1_RS02535	COG2255	four-way junction helicase activity
SJPD1_RS02540	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
SJPD1_RS02550	COG0159	tryptophan synthase activity
SJPD1_RS02570	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
SJPD1_RS02575	COG1136	(ABC) transporter
SJPD1_RS02580	COG1684	flagellar biosynthetic protein fliR
SJPD1_RS02590	COG0194	GDP metabolic process
SJPD1_RS02595	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
SJPD1_RS02600	COG0018	arginyl-trna synthetase
SJPD1_RS02610	COG3287	FIST C domain
SJPD1_RS02610	COG2200	EAL domain
SJPD1_RS02610	COG2199	diguanylate cyclase activity
SJPD1_RS02625	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
SJPD1_RS02630	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
SJPD1_RS02640	COG0149	triose-phosphate isomerase activity
SJPD1_RS02645	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
SJPD1_RS02655	COG0195	Participates in both transcription termination and antitermination
SJPD1_RS02690	COG0037	tRNA processing
SJPD1_RS02695	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SJPD1_RS02700	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
SJPD1_RS02705	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
SJPD1_RS02730	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
SJPD1_RS02735	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
SJPD1_RS02740	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
SJPD1_RS02750	COG1151	hydroxylamine reductase activity
SJPD1_RS02755	COG3040	lipid binding
SJPD1_RS02770	COG2326	polyphosphate kinase activity
SJPD1_RS02785	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_RS02790	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_RS02800	COG1981	membrane
SJPD1_RS02805	COG0513	Belongs to the DEAD box helicase family
SJPD1_RS02810	COG1944	ATP diphosphatase activity
SJPD1_RS02830	COG2204	response regulator
SJPD1_RS02835	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
SJPD1_RS02875	COG1333	cytochrome c biogenesis protein
SJPD1_RS02875	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SJPD1_RS02915	COG1058	Belongs to the CinA family
SJPD1_RS02915	COG1546	Belongs to the CinA family
SJPD1_RS02920	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
SJPD1_RS02930	COG0516	GMP reductase activity
SJPD1_RS02930	COG0517	IMP dehydrogenase activity
SJPD1_RS02935	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
SJPD1_RS02950	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
SJPD1_RS02955	COG0436	Aminotransferase
SJPD1_RS02970	COG1193	negative regulation of DNA recombination
SJPD1_RS02975	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
SJPD1_RS02980	COG0251	oxidation-reduction process
SJPD1_RS02985	COG0579	oxidoreductase
SJPD1_RS03005	COG3409	Peptidoglycan-binding domain 1 protein
SJPD1_RS03005	COG0793	Belongs to the peptidase S41A family
SJPD1_RS03020	COG0469	pyruvate kinase activity
SJPD1_RS03025	COG0261	This protein binds to 23S rRNA in the presence of protein L20
SJPD1_RS03030	COG0211	Belongs to the bacterial ribosomal protein bL27 family
SJPD1_RS03035	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
SJPD1_RS03040	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
SJPD1_RS03045	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
SJPD1_RS03055	COG1192	Involved in chromosome partitioning
SJPD1_RS03060	COG1475	DNA binding
SJPD1_RS03070	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
SJPD1_RS03075	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
SJPD1_RS03085	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
SJPD1_RS03100	COG0811	peptide transport
SJPD1_RS03105	COG0848	biopolymer transport protein
SJPD1_RS03115	COG0823	Involved in the tonB-independent uptake of proteins
SJPD1_RS03130	COG1047	Peptidyl-prolyl cis-trans
SJPD1_RS03140	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
SJPD1_RS03145	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
SJPD1_RS03150	COG0037	tRNA processing
SJPD1_RS03160	COG0067	glutamate synthase
SJPD1_RS03160	COG0069	glutamate synthase activity
SJPD1_RS03160	COG0070	glutamate synthase
SJPD1_RS03165	COG0493	'glutamate synthase
SJPD1_RS03175	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
SJPD1_RS03180	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
SJPD1_RS03185	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
SJPD1_RS03195	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
SJPD1_RS03215	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_RS03215	COG1776	CheC inhibitor of MCP methylation
SJPD1_RS03265	COG0748	coenzyme F420 binding
SJPD1_RS03280	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
SJPD1_RS03285	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_RS03290	COG1846	Transcriptional regulator
SJPD1_RS03305	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
SJPD1_RS03320	COG0730	response to heat
SJPD1_RS03325	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
SJPD1_RS03330	COG1301	dicarboxylic acid transport
SJPD1_RS03335	COG1301	dicarboxylic acid transport
SJPD1_RS03345	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SJPD1_RS03345	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SJPD1_RS03350	COG1971	Probably functions as a manganese efflux pump
SJPD1_RS03360	COG0484	heat shock protein binding
SJPD1_RS03370	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS03375	COG0642	Histidine kinase
SJPD1_RS03380	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
SJPD1_RS03390	COG0840	transmembrane signaling receptor activity
SJPD1_RS03395	COG0318	PFAM AMP-dependent synthetase and ligase
SJPD1_RS03400	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
SJPD1_RS03405	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
SJPD1_RS03420	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
SJPD1_RS03425	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
SJPD1_RS03440	COG3706	GGDEF domain
SJPD1_RS03450	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
SJPD1_RS03470	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
SJPD1_RS03485	COG0784	Response regulator, receiver
SJPD1_RS03485	COG2205	protein histidine kinase activity
SJPD1_RS03485	COG5002	protein histidine kinase activity
SJPD1_RS03500	COG0322	excinuclease ABC activity
SJPD1_RS03510	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
SJPD1_RS03520	COG0518	GMP synthase (glutamine-hydrolyzing) activity
SJPD1_RS03520	COG0519	Catalyzes the synthesis of GMP from XMP
SJPD1_RS03540	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
SJPD1_RS03550	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
SJPD1_RS03570	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_RS03575	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
SJPD1_RS03580	COG0165	Argininosuccinate lyase
SJPD1_RS03585	COG0537	adenosine 5'-monophosphoramidase activity
SJPD1_RS03590	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
SJPD1_RS03595	COG0072	phenylalanine-tRNA ligase activity
SJPD1_RS03595	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SJPD1_RS03600	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
SJPD1_RS03605	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
SJPD1_RS03610	COG1185	polyribonucleotide nucleotidyltransferase activity
SJPD1_RS03610	COG0539	negative regulation of cytoplasmic translation
SJPD1_RS03620	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
SJPD1_RS03630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_RS03640	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
SJPD1_RS03650	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
SJPD1_RS03655	COG0840	transmembrane signaling receptor activity
SJPD1_RS03680	COG2996	Protein conserved in bacteria
SJPD1_RS03685	COG2081	HI0933 family
SJPD1_RS03695	COG1981	membrane
SJPD1_RS03710	COG1902	pentaerythritol trinitrate reductase activity
SJPD1_RS03810	COG1538	Outer membrane efflux protein
SJPD1_RS03820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_RS03825	COG0840	transmembrane signaling receptor activity
SJPD1_RS03830	COG0840	transmembrane signaling receptor activity
SJPD1_RS03830	COG0840	transmembrane signaling receptor activity
SJPD1_RS03840	COG0587	DNA-directed DNA polymerase activity
SJPD1_RS03845	COG0642	Histidine kinase
SJPD1_RS03855	COG1346	cytolysis
SJPD1_RS03860	COG1380	Effector of murein hydrolase LrgA
SJPD1_RS03880	COG0772	Belongs to the SEDS family
SJPD1_RS03885	COG0564	pseudouridine synthase activity
SJPD1_RS03895	COG0220	tRNA (guanine-N7-)-methyltransferase activity
SJPD1_RS03900	COG1136	(ABC) transporter
SJPD1_RS03920	COG0528	UMP kinase activity
SJPD1_RS03925	COG1758	RNA polymerase activity
SJPD1_RS03930	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
SJPD1_RS03935	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
SJPD1_RS03940	COG2070	2-Nitropropane dioxygenase
SJPD1_RS03945	COG0860	N-Acetylmuramoyl-L-alanine amidase
SJPD1_RS03955	COG0563	adenylate kinase activity
SJPD1_RS03960	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
SJPD1_RS03965	COG3706	GGDEF domain
SJPD1_RS03975	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
SJPD1_RS03980	COG0497	DNA recombination
SJPD1_RS03990	COG0084	hydrolase, TatD family'
SJPD1_RS03995	COG3942	CHAP domain
SJPD1_RS03995	COG1388	LysM domain
SJPD1_RS04000	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
SJPD1_RS04005	COG0131	Imidazoleglycerol-phosphate dehydratase
SJPD1_RS04010	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
SJPD1_RS04025	COG0218	Necessary for normal cell division and for the maintenance of normal septation
SJPD1_RS04060	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SJPD1_RS04060	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SJPD1_RS04070	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
SJPD1_RS04095	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SJPD1_RS04100	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SJPD1_RS04130	COG0583	DNA-binding transcription factor activity
SJPD1_RS04135	COG1053	succinate dehydrogenase
SJPD1_RS04140	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
SJPD1_RS04145	COG2048	Heterodisulfide reductase, subunit B
SJPD1_RS04160	COG3005	denitrification pathway
SJPD1_RS04165	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
SJPD1_RS04170	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SJPD1_RS04170	COG1333	cytochrome c biogenesis protein
SJPD1_RS04190	COG3545	Serine hydrolase
SJPD1_RS04200	COG0463	Glycosyl transferase, family 2
SJPD1_RS04215	COG0398	Pfam SNARE associated Golgi protein
SJPD1_RS04225	COG0398	Pfam SNARE associated Golgi protein
SJPD1_RS04235	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
SJPD1_RS04245	COG0697	spore germination
SJPD1_RS04250	COG2207	Transcriptional regulator
SJPD1_RS04260	COG1575	Belongs to the MenA family. Type 1 subfamily
SJPD1_RS04290	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
SJPD1_RS04305	COG0243	molybdopterin cofactor binding
SJPD1_RS04310	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS04315	COG0348	domain, Protein
SJPD1_RS04320	COG3043	anaerobic respiration
SJPD1_RS04330	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_RS04330	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_RS04360	COG1342	Belongs to the UPF0251 family
SJPD1_RS04380	COG1271	oxidase subunit
SJPD1_RS04385	COG1294	oxidase, subunit
SJPD1_RS04410	COG0243	molybdopterin cofactor binding
SJPD1_RS04425	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS04460	COG2863	cytochrome
SJPD1_RS04465	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_RS04470	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_RS04485	COG2200	EAL domain
SJPD1_RS04485	COG3287	FIST C domain
SJPD1_RS04485	COG2199	diguanylate cyclase activity
SJPD1_RS04495	COG0513	Belongs to the DEAD box helicase family
SJPD1_RS04505	COG2964	Protein conserved in bacteria
SJPD1_RS04510	COG2084	Dehydrogenase
SJPD1_RS04515	COG0840	transmembrane signaling receptor activity
SJPD1_RS04515	COG3290	protein histidine kinase activity
SJPD1_RS04520	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_RS04525	COG2226	methyltransferase
SJPD1_RS04540	COG3437	response regulator, receiver
SJPD1_RS04540	COG0784	Response regulator, receiver
SJPD1_RS04545	COG0840	transmembrane signaling receptor activity
SJPD1_RS04545	COG3290	protein histidine kinase activity
SJPD1_RS04555	COG0217	transcriptional regulatory protein
SJPD1_RS04565	COG2358	TRAP transporter, solute receptor (TAXI family
SJPD1_RS04580	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
SJPD1_RS04640	COG0860	N-Acetylmuramoyl-L-alanine amidase
SJPD1_RS04640	COG3409	Peptidoglycan-binding domain 1 protein
SJPD1_RS04750	COG3550	peptidyl-serine autophosphorylation
SJPD1_RS04790	COG0419	ATPase involved in DNA repair
SJPD1_RS04800	COG1204	response to ionizing radiation
SJPD1_RS04880	COG0577	efflux transmembrane transporter activity
SJPD1_RS04880	COG1136	(ABC) transporter
SJPD1_RS04905	COG0348	domain, Protein
SJPD1_RS04920	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS04935	COG4263	nitrous-oxide reductase activity
SJPD1_RS04940	COG3852	Histidine kinase
SJPD1_RS04945	COG4753	response regulator
SJPD1_RS04945	COG2207	Transcriptional regulator
SJPD1_RS04950	COG2863	cytochrome
SJPD1_RS04955	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_RS04960	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_RS04965	COG2857	Cytochrome c1
SJPD1_RS04980	COG2199	diguanylate cyclase activity
SJPD1_RS04980	COG3287	FIST C domain
SJPD1_RS04980	COG2200	EAL domain
SJPD1_RS04985	COG0840	transmembrane signaling receptor activity
SJPD1_RS05000	COG0582	viral genome integration into host DNA
SJPD1_RS05035	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_RS05045	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS05075	COG3045	CreA protein
SJPD1_RS05100	COG3383	formate dehydrogenase (NAD+) activity
SJPD1_RS05105	COG3383	formate dehydrogenase (NAD+) activity
SJPD1_RS05110	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_RS05115	COG0651	ATP synthesis coupled electron transport
SJPD1_RS05120	COG0650	Formate hydrogenlyase subunit 4
SJPD1_RS05125	COG4237	Hydrogenase 4 membrane
SJPD1_RS05130	COG0651	ATP synthesis coupled electron transport
SJPD1_RS05135	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
SJPD1_RS05135	COG3261	NADH dehydrogenase
SJPD1_RS05145	COG3260	NADH ubiquinone oxidoreductase 20
SJPD1_RS05160	COG2116	formate transmembrane transporter activity
SJPD1_RS05175	COG3383	formate dehydrogenase (NAD+) activity
SJPD1_RS05295	COG0484	heat shock protein binding
SJPD1_RS05300	COG0545	Peptidyl-prolyl cis-trans isomerase
SJPD1_RS05305	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS05310	COG3301	Polysulphide reductase, NrfD
SJPD1_RS05315	COG1333	cytochrome c biogenesis protein
SJPD1_RS05315	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SJPD1_RS05320	COG1981	membrane
SJPD1_RS05345	COG1136	(ABC) transporter
SJPD1_RS05405	COG2308	Evidence 4 Homologs of previously reported genes of
SJPD1_RS05420	COG2966	Psort location CytoplasmicMembrane, score
SJPD1_RS05425	COG3610	response to peptide
SJPD1_RS05435	COG2217	Heavy metal translocating P-type atpase
SJPD1_RS05455	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
SJPD1_RS05460	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
SJPD1_RS05460	COG2169	Transcriptional regulator
SJPD1_RS05470	COG0352	thiamine-phosphate diphosphorylase activity
SJPD1_RS05485	COG1272	protein, Hemolysin III
SJPD1_RS05490	COG1280	lysine exporter protein (LysE YggA)
SJPD1_RS05495	COG0697	spore germination
SJPD1_RS05515	COG2176	DNA-directed DNA polymerase activity
SJPD1_RS05535	COG0798	PFAM Bile acid sodium symporter
SJPD1_RS05540	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
SJPD1_RS05550	COG0501	Belongs to the peptidase M48B family
SJPD1_RS05570	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
SJPD1_RS05575	COG2201	protein-glutamate methylesterase activity
SJPD1_RS05580	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
SJPD1_RS05590	COG0133	tryptophan synthase activity
SJPD1_RS05595	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
SJPD1_RS05605	COG0698	ribose 5-phosphate isomerase
SJPD1_RS05610	COG1994	Peptidase M50
SJPD1_RS05615	COG0681	Belongs to the peptidase S26 family
SJPD1_RS05620	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
SJPD1_RS05630	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
SJPD1_RS05645	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
SJPD1_RS05655	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
SJPD1_RS05660	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
SJPD1_RS05685	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
SJPD1_RS05690	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
SJPD1_RS05695	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
SJPD1_RS05700	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
SJPD1_RS05705	COG0629	single-stranded DNA binding
SJPD1_RS05710	COG0360	Binds together with S18 to 16S ribosomal RNA
SJPD1_RS05715	COG1466	dna polymerase III delta subunit
SJPD1_RS05720	COG0557	exoribonuclease II activity
SJPD1_RS05730	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
SJPD1_RS05735	COG2894	cell division
SJPD1_RS05740	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
SJPD1_RS05745	COG2861	carbohydrate metabolic process
SJPD1_RS05755	COG0730	response to heat
SJPD1_RS05760	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
SJPD1_RS05770	COG1760	l-serine dehydratase
SJPD1_RS05775	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
SJPD1_RS05780	COG2860	membrane
SJPD1_RS05785	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
SJPD1_RS05800	COG0736	holo-[acyl-carrier-protein] synthase activity
SJPD1_RS05805	COG1580	Controls the rotational direction of flagella during chemotaxis
SJPD1_RS05810	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
SJPD1_RS05815	COG0552	protein localization to endoplasmic reticulum
SJPD1_RS05820	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
SJPD1_RS05830	COG1418	mRNA catabolic process
SJPD1_RS05835	COG1132	(ABC) transporter
SJPD1_RS05860	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
SJPD1_RS05870	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS05880	COG5001	Diguanylate cyclase
SJPD1_RS05880	COG5002	protein histidine kinase activity
SJPD1_RS05885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SJPD1_RS05885	COG4191	Histidine kinase
SJPD1_RS05900	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
SJPD1_RS05960	COG1408	metallophosphoesterase
SJPD1_RS05965	COG2353	YceI-like domain
SJPD1_RS05980	COG1136	(ABC) transporter
SJPD1_RS06015	COG1454	alcohol dehydrogenase
SJPD1_RS06045	COG0242	peptide deformylase activity
SJPD1_RS06050	COG0824	Thioesterase
SJPD1_RS06065	COG1573	uracil-dna glycosylase
SJPD1_RS06080	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_RS06095	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS06100	COG2199	diguanylate cyclase activity
SJPD1_RS06100	COG2200	EAL domain
SJPD1_RS06100	COG3287	FIST C domain
SJPD1_RS06115	COG0426	domain, Protein
SJPD1_RS06130	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SJPD1_RS06135	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SJPD1_RS06140	COG1053	succinate dehydrogenase
SJPD1_RS06165	COG2040	homocysteine
SJPD1_RS06175	COG3264	Mechanosensitive ion channel
SJPD1_RS06175	COG1196	nuclear chromosome segregation
SJPD1_RS06180	COG1433	Dinitrogenase iron-molybdenum cofactor
SJPD1_RS06190	COG0716	FMN binding
SJPD1_RS06215	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
SJPD1_RS06230	COG0346	lactoylglutathione lyase activity
SJPD1_RS06265	COG1451	nucleotide metabolic process
SJPD1_RS06285	COG2207	Transcriptional regulator
SJPD1_RS06305	COG0697	spore germination
SJPD1_RS06330	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
SJPD1_RS06340	COG0840	transmembrane signaling receptor activity
SJPD1_RS06360	COG1276	copper resistance
SJPD1_RS06365	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
SJPD1_RS06375	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SJPD1_RS06380	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SJPD1_RS06390	COG0642	Histidine kinase
SJPD1_RS06395	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS06405	COG3153	acetyltransferase
SJPD1_RS06405	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SJPD1_RS06410	COG0328	RNA-DNA hybrid ribonuclease activity
SJPD1_RS06425	COG3290	protein histidine kinase activity
SJPD1_RS06425	COG0840	transmembrane signaling receptor activity
SJPD1_RS06435	COG0493	'glutamate synthase
SJPD1_RS06440	COG0375	protein maturation
SJPD1_RS06445	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_RS06455	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS06465	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_RS06500	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
SJPD1_RS06505	COG0523	cobalamin synthesis protein
SJPD1_RS06510	COG2879	small protein
SJPD1_RS06515	COG1966	Carbon starvation protein
SJPD1_RS06525	COG1053	succinate dehydrogenase
SJPD1_RS06560	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
SJPD1_RS06565	COG0585	pseudouridine synthase activity
SJPD1_RS06575	COG0569	domain protein
SJPD1_RS06575	COG0475	glutathione-regulated potassium exporter activity
SJPD1_RS06590	COG3706	GGDEF domain
SJPD1_RS06595	COG0351	phosphomethylpyrimidine kinase
SJPD1_RS06605	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
SJPD1_RS06615	COG0840	transmembrane signaling receptor activity
SJPD1_RS06630	COG0488	(ABC) transporter
SJPD1_RS06635	COG1360	Flagellar Motor Protein
SJPD1_RS06640	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
SJPD1_RS06645	COG1309	transcriptional regulator
SJPD1_RS06670	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
SJPD1_RS06700	COG0778	Nitroreductase
SJPD1_RS06705	COG0415	Belongs to the DNA photolyase family
SJPD1_RS06730	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
SJPD1_RS06745	COG4145	pantothenate transmembrane transporter activity
SJPD1_RS06760	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
SJPD1_RS06775	COG0742	ribosomal rna small subunit methyltransferase
SJPD1_RS06785	COG1706	bacterial-type flagellum-dependent cell motility
SJPD1_RS06790	COG3951	Flagellar rod assembly protein muramidase FlgJ
SJPD1_RS06810	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
SJPD1_RS06820	COG0659	secondary active sulfate transmembrane transporter activity
SJPD1_RS06825	COG1942	4-Oxalocrotonate Tautomerase
SJPD1_RS06830	COG0356	it plays a direct role in the translocation of protons across the membrane
SJPD1_RS06845	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
SJPD1_RS06850	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
SJPD1_RS06855	COG1472	Belongs to the glycosyl hydrolase 3 family
SJPD1_RS06860	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
SJPD1_RS06865	COG0101	tRNA pseudouridine synthase activity
SJPD1_RS06875	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
SJPD1_RS06890	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
SJPD1_RS06895	COG1338	Plays a role in the flagellum-specific transport system
SJPD1_RS06900	COG0676	glucose-6-phosphate 1-epimerase activity
SJPD1_RS06905	COG2249	NAD(P)H dehydrogenase (quinone) activity
SJPD1_RS06920	COG3174	membrane
SJPD1_RS06925	COG1032	radical SAM domain protein
SJPD1_RS06930	COG0166	Belongs to the GPI family
SJPD1_RS06950	COG3259	Nickel-dependent hydrogenase
SJPD1_RS06955	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
SJPD1_RS06960	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
SJPD1_RS06965	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
SJPD1_RS06970	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
SJPD1_RS06975	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
SJPD1_RS06980	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
SJPD1_RS06995	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
SJPD1_RS07000	COG0298	carbon dioxide binding
SJPD1_RS07005	COG0409	Hydrogenase expression formation protein
SJPD1_RS07010	COG0309	Hydrogenase expression formation protein (HypE)
SJPD1_RS07015	COG0375	protein maturation
SJPD1_RS07020	COG1247	-acetyltransferase
SJPD1_RS07025	COG0546	phosphoglycolate phosphatase activity
SJPD1_RS07045	COG0039	L-malate dehydrogenase activity
SJPD1_RS07050	COG0045	succinate-CoA ligase (ADP-forming) activity
SJPD1_RS07055	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
SJPD1_RS07065	COG0674	pyruvate-flavodoxin oxidoreductase activity
SJPD1_RS07065	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
SJPD1_RS07095	COG0114	fumarate hydratase activity
SJPD1_RS07120	COG1129	ABC transporter
SJPD1_RS07120	COG0842	Transport permease protein
SJPD1_RS07125	COG0842	Transport permease protein
SJPD1_RS07130	COG0842	Transport permease protein
SJPD1_RS07135	COG2095	MarC family integral membrane protein
SJPD1_RS07155	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
SJPD1_RS07160	COG0750	zinc metalloprotease
SJPD1_RS07165	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
SJPD1_RS07170	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_RS07175	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
SJPD1_RS07185	COG0167	dihydroorotate dehydrogenase activity
SJPD1_RS07195	COG0215	cysteine-tRNA ligase activity
SJPD1_RS07200	COG0728	peptidoglycan biosynthetic process
SJPD1_RS07210	COG0632	four-way junction helicase activity
SJPD1_RS07215	COG1181	Belongs to the D-alanine--D-alanine ligase family
SJPD1_RS07230	COG1254	Belongs to the acylphosphatase family
SJPD1_RS07235	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
SJPD1_RS07240	COG0280	phosphate acetyltransferase
SJPD1_RS07240	COG0857	belongs to the CobB CobQ family
SJPD1_RS07245	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
SJPD1_RS07250	COG1610	YqeY-like protein
SJPD1_RS07270	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
SJPD1_RS07310	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
SJPD1_RS07315	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
SJPD1_RS07330	COG0137	argininosuccinate synthase activity
SJPD1_RS07335	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
SJPD1_RS07340	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
SJPD1_RS07345	COG0802	atpase or kinase
SJPD1_RS07350	COG1137	ATPase activity
SJPD1_RS07355	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
SJPD1_RS07370	COG0582	viral genome integration into host DNA
SJPD1_RS07430	COG1053	succinate dehydrogenase
SJPD1_RS07510	COG3279	Response regulator of the LytR AlgR family
SJPD1_RS07520	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS07530	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
SJPD1_RS07540	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
SJPD1_RS07550	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
SJPD1_RS07560	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
SJPD1_RS07575	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SJPD1_RS07580	COG1120	ATPase activity
SJPD1_RS07595	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
SJPD1_RS07640	COG1132	(ABC) transporter
SJPD1_RS07645	COG1797	cobyrinic acid a,c-diamide synthase activity
SJPD1_RS07655	COG1648	precorrin-2 dehydrogenase activity
SJPD1_RS07655	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
SJPD1_RS07660	COG1309	transcriptional regulator
SJPD1_RS07765	COG0582	viral genome integration into host DNA
SJPD1_RS07775	COG0776	regulation of translation
SJPD1_RS07785	COG1674	ftsk spoiiie
SJPD1_RS07785	COG1196	nuclear chromosome segregation
SJPD1_RS07790	COG1049	propionate catabolic process, 2-methylcitrate cycle
SJPD1_RS07795	COG1047	Peptidyl-prolyl cis-trans
SJPD1_RS07800	COG0574	Belongs to the PEP-utilizing enzyme family
SJPD1_RS07800	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
SJPD1_RS07815	COG2814	Major facilitator Superfamily
SJPD1_RS07835	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
SJPD1_RS07840	COG0840	transmembrane signaling receptor activity
SJPD1_RS07845	COG1832	CoA-binding protein
SJPD1_RS07850	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
SJPD1_RS07860	COG1126	abc transporter atp-binding protein
SJPD1_RS07865	COG0765	amino acid transport
SJPD1_RS07870	COG4597	amino acid ABC transporter
SJPD1_RS07875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SJPD1_RS07880	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
SJPD1_RS07890	COG0586	Pfam SNARE associated Golgi protein
SJPD1_RS07895	COG0577	efflux transmembrane transporter activity
SJPD1_RS07895	COG1136	(ABC) transporter
SJPD1_RS07900	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
SJPD1_RS07920	COG0727	PFAM Uncharacterised protein family (UPF0153)
SJPD1_RS07930	COG0134	indole-3-glycerol-phosphate synthase activity
SJPD1_RS07940	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
SJPD1_RS07945	COG1122	ATPase activity
SJPD1_RS07960	COG0310	cobalt ion transport
SJPD1_RS07965	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
SJPD1_RS07970	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
SJPD1_RS07985	COG0446	pyridine nucleotide-disulphide oxidoreductase
SJPD1_RS08000	COG0028	Belongs to the TPP enzyme family
SJPD1_RS08005	COG0440	acetolactate synthase activity
SJPD1_RS08010	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SJPD1_RS08020	COG0493	'glutamate synthase
SJPD1_RS08030	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SJPD1_RS08060	COG1045	serine acetyltransferase
SJPD1_RS08065	COG1166	arginine decarboxylase activity
SJPD1_RS08070	COG0124	histidyl-tRNA synthetase
SJPD1_RS08085	COG0163	prenyltransferase activity
SJPD1_RS08105	COG0303	'Molybdopterin
SJPD1_RS08110	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
SJPD1_RS08125	COG1691	(AIR) carboxylase
SJPD1_RS08130	COG1606	tRNA processing
SJPD1_RS08135	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
SJPD1_RS08140	COG3875	lactate racemase activity
SJPD1_RS08145	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
SJPD1_RS08145	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
SJPD1_RS08180	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS08195	COG0588	phosphoglycerate mutase activity
SJPD1_RS08205	COG0582	viral genome integration into host DNA
SJPD1_RS08210	COG0343	queuine tRNA-ribosyltransferase activity
SJPD1_RS08220	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
SJPD1_RS08230	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SJPD1_RS08235	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SJPD1_RS08255	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
SJPD1_RS08260	COG1187	pseudouridine synthase activity
SJPD1_RS08270	COG0028	Belongs to the TPP enzyme family
SJPD1_RS08300	COG1309	transcriptional regulator
SJPD1_RS08340	COG0840	transmembrane signaling receptor activity
SJPD1_RS08340	COG3290	protein histidine kinase activity
SJPD1_RS08345	COG1592	Rubrerythrin
SJPD1_RS08355	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
SJPD1_RS08365	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
SJPD1_RS08365	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
SJPD1_RS08370	COG3030	protein affecting phage T7 exclusion by the F plasmid
SJPD1_RS08375	COG0442	prolyl-tRNA aminoacylation
SJPD1_RS08380	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
SJPD1_RS08385	COG0142	geranyltranstransferase activity
SJPD1_RS08405	COG1959	2 iron, 2 sulfur cluster binding
SJPD1_RS08415	COG3706	GGDEF domain
SJPD1_RS08420	COG0525	valine-tRNA ligase activity
SJPD1_RS08425	COG0521	Mo-molybdopterin cofactor biosynthetic process
SJPD1_RS08430	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
SJPD1_RS08435	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
SJPD1_RS08450	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
SJPD1_RS08455	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
SJPD1_RS08465	COG2195	Cleaves the N-terminal amino acid of tripeptides
SJPD1_RS08475	COG0500	methyltransferase
SJPD1_RS08490	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
SJPD1_RS08495	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
SJPD1_RS08500	COG1663	tetraacyldisaccharide 4'-kinase activity
SJPD1_RS08505	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
SJPD1_RS08510	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
SJPD1_RS08515	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
SJPD1_RS08530	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
SJPD1_RS08535	COG0443	Heat shock 70 kDa protein
SJPD1_RS08540	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
SJPD1_RS08545	COG1420	regulation of RNA biosynthetic process
SJPD1_RS08555	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
SJPD1_RS08560	COG1959	2 iron, 2 sulfur cluster binding
SJPD1_RS08565	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
SJPD1_RS08570	COG2404	hydrolase activity, acting on ester bonds
SJPD1_RS08580	COG2226	methyltransferase
SJPD1_RS08590	COG0196	riboflavin kinase activity
SJPD1_RS08595	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
SJPD1_RS08600	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
SJPD1_RS08605	COG0730	response to heat
SJPD1_RS08615	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
SJPD1_RS08630	COG0527	aspartate kinase activity
SJPD1_RS08635	COG0494	nUDIX hydrolase
SJPD1_RS08640	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SJPD1_RS08650	COG0789	Transcriptional regulator
SJPD1_RS08655	COG0484	heat shock protein binding
SJPD1_RS08665	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS08670	COG0642	Histidine kinase
SJPD1_RS08685	COG0653	protein targeting
SJPD1_RS08690	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
SJPD1_RS08700	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
SJPD1_RS08705	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
SJPD1_RS08715	COG0706	membrane insertase activity
SJPD1_RS08720	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
SJPD1_RS08725	COG0594	ribonuclease P activity
SJPD1_RS08730	COG0230	Belongs to the bacterial ribosomal protein bL34 family
SJPD1_RS08745	COG4865	methylaspartate mutase activity
SJPD1_RS08760	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
SJPD1_RS08775	COG0542	response to heat
SJPD1_RS08780	COG0793	Belongs to the peptidase S41A family
SJPD1_RS08785	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
SJPD1_RS08790	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
SJPD1_RS08795	COG0047	phosphoribosylformylglycinamidine synthase activity
SJPD1_RS08805	COG0204	Acyl-transferase
SJPD1_RS08810	COG0326	Molecular chaperone. Has ATPase activity
SJPD1_RS08820	COG1331	Highly conserved protein containing a thioredoxin domain
SJPD1_RS08825	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
SJPD1_RS08860	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
SJPD1_RS08875	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
SJPD1_RS08885	COG2608	mercury ion transmembrane transporter activity
SJPD1_RS08890	COG2217	Heavy metal translocating P-type atpase
SJPD1_RS08895	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
SJPD1_RS08910	COG0275	rRNA processing
SJPD1_RS08920	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
SJPD1_RS08925	COG0849	cell division
SJPD1_RS08930	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
SJPD1_RS08940	COG2890	protein-(glutamine-N5) methyltransferase activity
SJPD1_RS08940	COG0220	tRNA (guanine-N7-)-methyltransferase activity
SJPD1_RS08955	COG0488	(ABC) transporter
SJPD1_RS08960	COG0840	transmembrane signaling receptor activity
SJPD1_RS08970	COG2151	metal-sulfur cluster biosynthetic enzyme
SJPD1_RS08985	COG0138	bifunctional purine biosynthesis protein purh
SJPD1_RS08990	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
SJPD1_RS09000	COG1607	acyl-coa hydrolase
SJPD1_RS09005	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
SJPD1_RS09010	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
SJPD1_RS09025	COG1309	transcriptional regulator
SJPD1_RS09035	COG1566	PFAM secretion protein HlyD family protein
SJPD1_RS09040	COG2814	Major facilitator Superfamily
SJPD1_RS09045	COG0589	response to stress
SJPD1_RS09050	COG0842	Transport permease protein
SJPD1_RS09055	COG0842	Transport permease protein
SJPD1_RS09060	COG1131	(ABC) transporter
SJPD1_RS09065	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_RS09070	COG1309	transcriptional regulator
SJPD1_RS09085	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
SJPD1_RS09095	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
SJPD1_RS09100	COG0805	protein transport
SJPD1_RS09105	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
SJPD1_RS09120	COG3437	response regulator, receiver
SJPD1_RS09125	COG4999	Histidine kinase
SJPD1_RS09125	COG3850	Histidine kinase
SJPD1_RS09125	COG3437	response regulator, receiver
SJPD1_RS09125	COG2205	protein histidine kinase activity
SJPD1_RS09130	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
SJPD1_RS09150	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
SJPD1_RS09155	COG0569	domain protein
SJPD1_RS09160	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
SJPD1_RS09175	COG2068	MobA-Related Protein
SJPD1_RS09180	COG3608	succinylglutamate desuccinylase aspartoacylase
SJPD1_RS09180	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
SJPD1_RS09185	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
SJPD1_RS09190	COG0535	radical SAM domain protein
SJPD1_RS09200	COG2226	methyltransferase
SJPD1_RS09220	COG2205	protein histidine kinase activity
SJPD1_RS09220	COG2198	Histidine kinase
SJPD1_RS09220	COG0784	Response regulator, receiver
SJPD1_RS09220	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SJPD1_RS09235	COG0840	transmembrane signaling receptor activity
SJPD1_RS09270	COG0646	methionine synthase
SJPD1_RS09270	COG1410	methionine synthase
SJPD1_RS09285	COG0840	transmembrane signaling receptor activity
SJPD1_RS09290	COG1280	lysine exporter protein (LysE YggA)
SJPD1_RS09310	COG0004	ammonium transporteR
SJPD1_RS09315	COG0347	Belongs to the P(II) protein family
SJPD1_RS09335	COG0751	glycine-tRNA ligase activity
SJPD1_RS09350	COG0288	reversible hydration of carbon dioxide
SJPD1_RS09355	COG3123	guanosine phosphorylase activity
SJPD1_RS09365	COG2081	HI0933 family
SJPD1_RS09375	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
SJPD1_RS09380	COG0788	formyltetrahydrofolate deformylase activity
SJPD1_RS09385	COG0617	tRNA 3'-terminal CCA addition
SJPD1_RS09400	COG0473	3-isopropylmalate dehydrogenase activity
SJPD1_RS09405	COG0066	3-isopropylmalate dehydratase activity
SJPD1_RS09430	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
SJPD1_RS09440	COG0708	Exodeoxyribonuclease III
SJPD1_RS09455	COG2816	NAD+ diphosphatase activity
SJPD1_RS09460	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
SJPD1_RS09465	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
SJPD1_RS09495	COG4977	sequence-specific DNA binding
SJPD1_RS09500	COG0431	NADPH-dependent FMN reductase
SJPD1_RS09505	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
SJPD1_RS09510	COG3706	GGDEF domain
SJPD1_RS09520	COG4895	conserved protein (DUF2196)
SJPD1_RS09540	COG0513	Belongs to the DEAD box helicase family
SJPD1_RS09555	COG0642	Histidine kinase
SJPD1_RS09560	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS09595	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
SJPD1_RS09600	COG0372	Belongs to the citrate synthase family
SJPD1_RS09605	COG2079	MmgE PrpD family protein
SJPD1_RS09615	COG2824	Alkylphosphonate utilization operon protein PhnA
SJPD1_RS09625	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
SJPD1_RS09635	COG4786	Flagellar basal body rod
SJPD1_RS09640	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SJPD1_RS09650	COG1733	regulation of RNA biosynthetic process
SJPD1_RS09665	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
SJPD1_RS09670	COG1121	(ABC) transporter
SJPD1_RS09675	COG1108	ABC-type Mn2 Zn2 transport systems permease components
SJPD1_RS09690	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
SJPD1_RS09695	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
SJPD1_RS09700	COG3162	membrane
SJPD1_RS09705	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS09710	COG0642	Histidine kinase
SJPD1_RS09725	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
SJPD1_RS09730	COG1918	ferrous iron import across plasma membrane
SJPD1_RS09755	COG0848	biopolymer transport protein
SJPD1_RS09785	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SJPD1_RS09790	COG1120	ATPase activity
SJPD1_RS09800	COG3585	molybdate ion transport
SJPD1_RS09810	COG0598	Magnesium transport protein CorA
SJPD1_RS09815	COG0739	heme binding
SJPD1_RS09825	COG0277	FAD linked oxidase domain protein
SJPD1_RS09830	COG1295	ribonuclease BN
SJPD1_RS09840	COG0305	Participates in initiation and elongation during chromosome replication
SJPD1_RS09845	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
SJPD1_RS09850	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
SJPD1_RS09875	COG0556	nucleotide-excision repair
SJPD1_RS09885	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
SJPD1_RS09890	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
SJPD1_RS09895	COG2176	DNA-directed DNA polymerase activity
SJPD1_RS09900	COG0135	phosphoribosylanthranilate isomerase activity
SJPD1_RS09905	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
SJPD1_RS09915	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
SJPD1_RS09930	COG1692	metallophosphoesterase
SJPD1_RS09935	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
SJPD1_RS09945	COG0739	heme binding
SJPD1_RS09950	COG0285	dihydrofolate synthase activity
SJPD1_RS09965	COG0495	leucyl-tRNA aminoacylation
SJPD1_RS09970	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SJPD1_RS09975	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SJPD1_RS09980	COG1862	Preprotein translocase
SJPD1_RS09985	COG0815	Transfers the fatty acyl group on membrane lipoproteins
SJPD1_RS09990	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
SJPD1_RS10000	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
SJPD1_RS10010	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
SJPD1_RS10020	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
SJPD1_RS10025	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
SJPD1_RS10030	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
SJPD1_RS10035	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
SJPD1_RS10040	COG0210	DNA helicase
SJPD1_RS10070	COG0540	Belongs to the ATCase OTCase family
SJPD1_RS10080	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
SJPD1_RS10120	COG0228	four-way junction DNA binding
SJPD1_RS10125	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
SJPD1_RS10130	COG0564	pseudouridine synthase activity
SJPD1_RS10135	COG1519	Transferase
SJPD1_RS10145	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
SJPD1_RS10150	COG0752	glycyl-tRNA synthetase alpha subunit
SJPD1_RS10160	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
SJPD1_RS10165	COG0826	peptidase U32
SJPD1_RS10175	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
SJPD1_RS10180	COG0174	glutamine synthetase
SJPD1_RS10190	COG4172	Belongs to the ABC transporter superfamily
SJPD1_RS10195	COG0156	8-amino-7-oxononanoate synthase activity
SJPD1_RS10200	COG0424	maF-like protein
SJPD1_RS10210	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
SJPD1_RS10235	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_RS10245	COG0673	inositol 2-dehydrogenase activity
SJPD1_RS10250	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
SJPD1_RS10255	COG0768	penicillin binding
SJPD1_RS10265	COG1558	bacterial-type flagellum-dependent cell motility
SJPD1_RS10270	COG1815	bacterial-type flagellum-dependent cell motility
SJPD1_RS10275	COG0772	Belongs to the SEDS family
SJPD1_RS10280	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
SJPD1_RS10295	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
SJPD1_RS10305	COG0697	spore germination
SJPD1_RS10345	COG0512	Glutamine amidotransferase of anthranilate synthase
SJPD1_RS10355	COG0667	Aldo Keto reductase
SJPD1_RS10365	COG1073	alpha beta
SJPD1_RS10375	COG0656	L-ascorbic acid biosynthetic process
SJPD1_RS10395	COG2814	Major facilitator Superfamily
SJPD1_RS10400	COG2207	Transcriptional regulator
SJPD1_RS10420	COG1979	alcohol dehydrogenase
SJPD1_RS10435	COG0025	NhaP-type Na H and K H
SJPD1_RS10445	COG4221	oxidoreductase activity
SJPD1_RS10455	COG1064	alcohol dehydrogenase
SJPD1_RS10460	COG0667	Aldo Keto reductase
SJPD1_RS10490	COG2814	Major facilitator Superfamily
SJPD1_RS10500	COG0640	Transcriptional regulator
SJPD1_RS10530	COG2301	Belongs to the HpcH HpaI aldolase family
SJPD1_RS10535	COG3052	prosthetic group binding
SJPD1_RS10550	COG2814	Major facilitator Superfamily
SJPD1_RS10560	COG2252	PERMEase
SJPD1_RS10565	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
SJPD1_RS10570	COG0133	tryptophan synthase activity
SJPD1_RS10580	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
SJPD1_RS10585	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
SJPD1_RS10590	COG3706	GGDEF domain
SJPD1_RS10610	COG2202	Pas domain
SJPD1_RS10610	COG2200	EAL domain
SJPD1_RS10610	COG2199	diguanylate cyclase activity
SJPD1_RS10620	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SJPD1_RS10640	COG0488	(ABC) transporter
SJPD1_RS10645	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_RS10650	COG0651	ATP synthesis coupled electron transport
SJPD1_RS10655	COG0650	Formate hydrogenlyase subunit 4
SJPD1_RS10660	COG4237	Hydrogenase 4 membrane
SJPD1_RS10665	COG0651	ATP synthesis coupled electron transport
SJPD1_RS10670	COG3261	NADH dehydrogenase
SJPD1_RS10670	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
SJPD1_RS10680	COG3260	NADH ubiquinone oxidoreductase 20
SJPD1_RS10715	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
SJPD1_RS10730	COG2171	N-acyltransferase activity
SJPD1_RS10735	COG0489	protein tyrosine kinase activity
SJPD1_RS10740	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
SJPD1_RS10740	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
SJPD1_RS10750	COG2046	Belongs to the sulfate adenylyltransferase family
SJPD1_RS10760	COG2353	YceI-like domain
SJPD1_RS10765	COG1739	Uncharacterized protein family UPF0029
SJPD1_RS10775	COG4149	molybdate abc transporter
SJPD1_RS10785	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
SJPD1_RS10810	COG1686	Belongs to the peptidase S11 family
SJPD1_RS10815	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
SJPD1_RS10820	COG0577	efflux transmembrane transporter activity
SJPD1_RS10820	COG1136	(ABC) transporter
SJPD1_RS10825	COG1136	(ABC) transporter
SJPD1_RS10825	COG0577	efflux transmembrane transporter activity
SJPD1_RS10845	COG0668	transmembrane transport
SJPD1_RS10850	COG3300	MHYT domain
SJPD1_RS10850	COG5001	Diguanylate cyclase
SJPD1_RS10940	COG0284	orotidine-5'-phosphate decarboxylase activity
SJPD1_RS10945	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
SJPD1_RS10960	COG2877	3-deoxy-8-phosphooctulonate synthase activity
SJPD1_RS10965	COG0697	spore germination
SJPD1_RS10970	COG0668	transmembrane transport
SJPD1_RS10975	COG1160	GTP binding
SJPD1_RS10990	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
SJPD1_RS11000	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_RS11005	COG1183	phosphatidylcholine synthase activity
SJPD1_RS11015	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SJPD1_RS11020	COG2264	protein methyltransferase activity
SJPD1_RS11025	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS11030	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
SJPD1_RS11035	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
SJPD1_RS11055	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SJPD1_RS11095	COG0028	Belongs to the TPP enzyme family
SJPD1_RS11105	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
SJPD1_RS11120	COG1793	dna ligase
SJPD1_RS11130	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
SJPD1_RS11135	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
SJPD1_RS11160	COG0859	PFAM glycosyl transferase family 9
SJPD1_RS11180	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
SJPD1_RS11185	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
SJPD1_RS11185	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
SJPD1_RS11190	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
SJPD1_RS11215	COG2217	Heavy metal translocating P-type atpase
SJPD1_RS11220	COG5001	Diguanylate cyclase
SJPD1_RS11220	COG5002	protein histidine kinase activity
SJPD1_RS11225	COG0697	spore germination
SJPD1_RS11235	COG2199	diguanylate cyclase activity
SJPD1_RS11250	COG1496	oxidoreductase activity
SJPD1_RS11260	COG0840	transmembrane signaling receptor activity
SJPD1_RS11265	COG1984	allophanate hydrolase subunit 2
SJPD1_RS11275	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
SJPD1_RS11280	COG0445	tRNA wobble uridine modification
SJPD1_RS11285	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_RS11290	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_RS11295	COG2857	Cytochrome c1
SJPD1_RS11310	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
SJPD1_RS11315	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
SJPD1_RS11325	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
SJPD1_RS11330	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SJPD1_RS11335	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
SJPD1_RS11390	COG0582	viral genome integration into host DNA
SJPD1_RS11420	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS11435	COG0398	Pfam SNARE associated Golgi protein
SJPD1_RS11440	COG4943	cyclic-guanylate-specific phosphodiesterase activity
SJPD1_RS11460	COG0390	transport system, permease component
SJPD1_RS11465	COG0439	Biotin carboxylase
SJPD1_RS11480	COG0513	Belongs to the DEAD box helicase family
SJPD1_RS11485	COG1671	Belongs to the UPF0178 family
SJPD1_RS11490	COG0667	Aldo Keto reductase
SJPD1_RS11495	COG2814	Major facilitator Superfamily
SJPD1_RS11500	COG2207	Transcriptional regulator
SJPD1_RS11520	COG0573	inorganic phosphate transmembrane transporter activity
SJPD1_RS11530	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
SJPD1_RS11535	COG0840	transmembrane signaling receptor activity
SJPD1_RS11535	COG3290	protein histidine kinase activity
SJPD1_RS11540	COG3384	dioxygenase
SJPD1_RS11560	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS11565	COG5002	protein histidine kinase activity
SJPD1_RS11570	COG1607	acyl-coa hydrolase
SJPD1_RS11605	COG1733	regulation of RNA biosynthetic process
SJPD1_RS11610	COG2249	NAD(P)H dehydrogenase (quinone) activity
SJPD1_RS11615	COG3852	Histidine kinase
SJPD1_RS11620	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
SJPD1_RS11625	COG0602	queuosine metabolic process
SJPD1_RS11655	COG1702	phosphate starvation-inducible protein PhoH
SJPD1_RS11660	COG0475	glutathione-regulated potassium exporter activity
SJPD1_RS11670	COG2814	Major facilitator Superfamily
SJPD1_RS11675	COG0477	Major facilitator Superfamily
SJPD1_RS11690	COG3787	Belongs to the UPF0306 family
SJPD1_RS11695	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
SJPD1_RS11725	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
SJPD1_RS11725	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_RS11725	COG1013	pyruvate-flavodoxin oxidoreductase activity
SJPD1_RS11725	COG0674	pyruvate-flavodoxin oxidoreductase activity
SJPD1_RS11735	COG0471	metal ion transport
SJPD1_RS11745	COG0668	transmembrane transport
SJPD1_RS11750	COG3047	cAMP biosynthetic process
SJPD1_RS11750	COG2885	chlorophyll binding
SJPD1_RS11760	COG1881	PFAM PEBP family protein
SJPD1_RS11765	COG2207	Transcriptional regulator
SJPD1_RS11770	COG0519	Catalyzes the synthesis of GMP from XMP
SJPD1_RS11790	COG1979	alcohol dehydrogenase
SJPD1_RS11800	COG0038	chloride channel
SJPD1_RS11805	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
SJPD1_RS11815	COG1324	tolerance protein
SJPD1_RS11820	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
SJPD1_RS11825	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
SJPD1_RS11870	COG3278	Belongs to the heme-copper respiratory oxidase family
SJPD1_RS11875	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS11890	COG0505	Belongs to the CarA family
SJPD1_RS11910	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
SJPD1_RS11915	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
SJPD1_RS11920	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
SJPD1_RS11935	COG0546	phosphoglycolate phosphatase activity
SJPD1_RS11950	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SJPD1_RS11955	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
SJPD1_RS11960	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
SJPD1_RS11965	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
SJPD1_RS11980	COG0203	ribosomal protein L17
SJPD1_RS11990	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
SJPD1_RS11995	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
SJPD1_RS12000	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
SJPD1_RS12005	COG0257	Belongs to the bacterial ribosomal protein bL36 family
SJPD1_RS12015	COG0024	Methionine aminopeptidase
SJPD1_RS12020	COG0201	protein transport
SJPD1_RS12025	COG0200	Binds to the 23S rRNA
SJPD1_RS12030	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
SJPD1_RS12035	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
SJPD1_RS12040	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
SJPD1_RS12045	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
SJPD1_RS12050	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
SJPD1_RS12060	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
SJPD1_RS12065	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
SJPD1_RS12070	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
SJPD1_RS12075	COG0255	Belongs to the universal ribosomal protein uL29 family
SJPD1_RS12080	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
SJPD1_RS12085	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
SJPD1_RS12095	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
SJPD1_RS12100	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
SJPD1_RS12105	COG0089	rRNA binding
SJPD1_RS12110	COG0088	Forms part of the polypeptide exit tunnel
SJPD1_RS12115	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
SJPD1_RS12120	COG0051	transcription antitermination factor activity, RNA binding
SJPD1_RS12135	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
SJPD1_RS12145	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
SJPD1_RS12150	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
SJPD1_RS12155	COG0571	ribonuclease III activity
SJPD1_RS12160	COG0328	RNA-DNA hybrid ribonuclease activity
SJPD1_RS12170	COG0358	DNA primase activity
SJPD1_RS12175	COG0137	argininosuccinate synthase activity
SJPD1_RS12180	COG2201	protein-glutamate methylesterase activity
SJPD1_RS12200	COG2205	protein histidine kinase activity
SJPD1_RS12205	COG2201	protein-glutamate methylesterase activity
SJPD1_RS12210	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
SJPD1_RS12215	COG5002	protein histidine kinase activity
SJPD1_RS12225	COG0643	Histidine kinase
SJPD1_RS12225	COG2198	Histidine kinase
SJPD1_RS12235	COG0840	transmembrane signaling receptor activity
SJPD1_RS12240	COG0835	chemotaxis
SJPD1_RS12245	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS12275	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
SJPD1_RS12280	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
SJPD1_RS12290	COG1280	lysine exporter protein (LysE YggA)
SJPD1_RS12295	COG1090	epimerase
SJPD1_RS12310	COG1136	(ABC) transporter
SJPD1_RS12310	COG0577	efflux transmembrane transporter activity
SJPD1_RS12335	COG2199	diguanylate cyclase activity
SJPD1_RS12340	COG2962	Rard protein
SJPD1_RS12350	COG3850	Histidine kinase
SJPD1_RS12350	COG5002	protein histidine kinase activity
SJPD1_RS12355	COG2194	sulfuric ester hydrolase activity
SJPD1_RS12365	COG2200	EAL domain
SJPD1_RS12380	COG1968	undecaprenyl-diphosphatase activity
SJPD1_RS12385	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
SJPD1_RS12390	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
SJPD1_RS12400	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
SJPD1_RS12415	COG1027	Aspartate ammonia-lyase
SJPD1_RS12420	COG1027	Aspartate ammonia-lyase
SJPD1_RS12425	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
SJPD1_RS12430	COG0252	asparaginase activity
SJPD1_RS12435	COG4191	Histidine kinase
SJPD1_RS12440	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS12445	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
SJPD1_RS12455	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
SJPD1_RS12460	COG0804	urea catabolic process
SJPD1_RS12465	COG0832	Belongs to the urease beta subunit family
SJPD1_RS12465	COG0831	urea catabolic process
SJPD1_RS12470	COG0829	nickel cation binding
SJPD1_RS12500	COG0784	Response regulator, receiver
SJPD1_RS12500	COG2205	protein histidine kinase activity
SJPD1_RS12505	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS12520	COG0714	Associated with various cellular activities
SJPD1_RS12560	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SJPD1_RS12565	COG0765	amino acid transport
SJPD1_RS12595	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
SJPD1_RS12600	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
SJPD1_RS12635	COG0709	Synthesizes selenophosphate from selenide and ATP
SJPD1_RS12640	COG0425	Belongs to the sulfur carrier protein TusA family
SJPD1_RS12650	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
SJPD1_RS12655	COG5001	Diguanylate cyclase
SJPD1_RS12655	COG3447	MASE1 domain protein
SJPD1_RS12655	COG5002	protein histidine kinase activity
SJPD1_RS12665	COG2814	Major facilitator Superfamily
SJPD1_RS12675	COG3839	Belongs to the ABC transporter superfamily
SJPD1_RS12680	COG4662	Binding-protein-dependent transport system inner membrane component
SJPD1_RS12685	COG2998	abc-type tungstate transport system, permease component
SJPD1_RS12695	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
SJPD1_RS12705	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS12730	COG1120	ATPase activity
SJPD1_RS12735	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SJPD1_RS12740	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
SJPD1_RS12745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
SJPD1_RS12760	COG0848	biopolymer transport protein
SJPD1_RS12765	COG0811	peptide transport
SJPD1_RS12790	COG0500	methyltransferase
SJPD1_RS12800	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
SJPD1_RS12805	COG4208	sulfate ABC transporter
SJPD1_RS12810	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
SJPD1_RS12815	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
SJPD1_RS12820	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
SJPD1_RS12840	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS12870	COG2205	protein histidine kinase activity
SJPD1_RS12880	COG1921	L-seryl-tRNASec selenium transferase activity
SJPD1_RS12905	COG1741	Belongs to the pirin family
SJPD1_RS12940	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS12945	COG0642	Histidine kinase
SJPD1_RS12955	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
SJPD1_RS12960	COG0463	Glycosyl transferase, family 2
SJPD1_RS12970	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_RS13025	COG0513	Belongs to the DEAD box helicase family
SJPD1_RS13055	COG1305	Transglutaminase-like
SJPD1_RS13070	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS13090	COG0439	Biotin carboxylase
SJPD1_RS13105	COG3842	ATPase activity
SJPD1_RS13120	COG0642	Histidine kinase
SJPD1_RS13125	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS13135	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS13140	COG2205	protein histidine kinase activity
SJPD1_RS13145	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
SJPD1_RS13155	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
SJPD1_RS13170	COG0300	oxidoreductase activity
SJPD1_RS13185	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
SJPD1_RS13195	COG2814	Major facilitator Superfamily
SJPD1_RS13200	COG1238	metal cluster binding
SJPD1_RS13215	COG0471	metal ion transport
SJPD1_RS13220	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
SJPD1_RS13230	COG0303	'Molybdopterin
SJPD1_RS13235	COG0314	molybdopterin synthase activity
SJPD1_RS13255	COG1157	protein secretion by the type III secretion system
SJPD1_RS13260	COG0302	gtp cyclohydrolase
SJPD1_RS13265	COG0544	peptidyl-prolyl cis-trans isomerase activity
SJPD1_RS13270	COG0740	serine-type endopeptidase activity
SJPD1_RS13285	COG0606	chelatase, subunit chli
SJPD1_RS13290	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
SJPD1_RS13290	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
SJPD1_RS13295	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
SJPD1_RS13300	COG2022	thiamine diphosphate biosynthetic process
SJPD1_RS13380	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
SJPD1_RS13425	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
SJPD1_RS13440	COG0463	Glycosyl transferase, family 2
SJPD1_RS13455	COG0671	phosphoesterase, PA-phosphatase related
SJPD1_RS13465	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_RS13480	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
SJPD1_RS13505	COG0840	transmembrane signaling receptor activity
SJPD1_RS13510	COG2183	response to ionizing radiation
SJPD1_RS13530	COG0842	Transport permease protein
SJPD1_RS13535	COG0842	Transport permease protein
SJPD1_RS13540	COG1131	(ABC) transporter
SJPD1_RS13545	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_RS13555	COG1309	transcriptional regulator
SJPD1_RS13560	COG0778	Nitroreductase
SJPD1_RS13590	COG0577	efflux transmembrane transporter activity
SJPD1_RS13595	COG1136	(ABC) transporter
SJPD1_RS13605	COG1472	Belongs to the glycosyl hydrolase 3 family
SJPD1_RS13635	COG0431	NADPH-dependent FMN reductase
SJPD1_RS13645	COG0300	oxidoreductase activity
SJPD1_RS13655	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
SJPD1_RS13660	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_RS13685	COG0745	RESPONSE REGULATOR receiver
SJPD1_RS13690	COG0642	Histidine kinase
SJPD1_RS13700	COG0175	sulfate reduction
SJPD1_RS13705	COG0175	sulfate reduction
SJPD1_RS13710	COG2895	sulfate adenylyltransferase (ATP) activity
SJPD1_RS13720	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
SJPD1_RS13730	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
SJPD1_RS13735	COG1648	precorrin-2 dehydrogenase activity
SJPD1_RS13735	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
SJPD1_RS13740	COG0626	cystathionine gamma-synthase activity
SJPD1_RS13750	COG0482	sulfurtransferase activity
SJPD1_RS13770	COG3706	GGDEF domain
SJPD1_RS13780	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
SJPD1_RS13790	COG0861	Integral membrane protein TerC family
SJPD1_RS13795	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
SJPD1_RS13800	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
SJPD1_RS13805	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
SJPD1_RS13810	COG0280	phosphate acetyltransferase
SJPD1_RS13810	COG0281	malic enzyme
SJPD1_RS13815	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SJPD1_RS13825	COG0439	Biotin carboxylase
SJPD1_RS13830	COG0511	ligase activity, forming carbon-carbon bonds
SJPD1_RS13835	COG0717	Belongs to the dCTP deaminase family
SJPD1_RS13855	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
SJPD1_RS13860	COG1073	alpha beta
SJPD1_RS13875	COG1086	Polysaccharide biosynthesis protein
SJPD1_RS13880	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
SJPD1_RS13885	COG1083	cytidylyl-transferase
SJPD1_RS13895	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
SJPD1_RS13900	COG2089	acid synthase
SJPD1_RS13905	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
SJPD1_RS13915	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
SJPD1_RS13920	COG0107	imidazoleglycerol-phosphate synthase activity
SJPD1_RS13930	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
SJPD1_RS13930	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
SJPD1_RS13935	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
SJPD1_RS13940	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
SJPD1_RS13945	COG0372	Belongs to the citrate synthase family
SJPD1_RS13960	COG0148	phosphopyruvate hydratase activity
SJPD1_RS13970	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
SJPD1_RS13980	COG0812	UDP-N-acetylmuramate dehydrogenase activity
SJPD1_RS13990	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
SJPD1_RS14020	COG1408	metallophosphoesterase
SJPD1_RS14025	COG1115	amino acid carrier protein
SJPD1_RS14030	COG2233	PERMEase
SJPD1_RS14035	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
SJPD1_RS14040	COG0575	Belongs to the CDS family
SJPD1_RS14055	COG1929	Belongs to the glycerate kinase type-1 family
SJPD1_RS14075	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SJPD1_RS14085	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
SJPD1_RS14090	COG0746	molybdenum cofactor guanylyltransferase activity
SJPD1_RS14120	COG0724	RNA recognition motif
SJPD1_RS14125	COG0315	cyclic pyranopterin monophosphate synthase activity
SJPD1_RS14130	COG2921	Belongs to the UPF0250 family
SJPD1_RS14215	COG0670	Belongs to the BI1 family
SJPD1_RS14265	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_RS14270	COG0243	molybdopterin cofactor binding
SJPD1_RS14275	COG4106	trans-aconitate 2-methyltransferase activity
SJPD1_RS14280	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
SJPD1_RS14335	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
SJPD1_RS14345	COG0233	cytoplasmic translational termination
SJPD1_RS14350	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
SJPD1_RS14375	COG1704	LemA family
SJPD1_RS14380	COG1217	gtp-binding protein TYPA
SJPD1_RS14390	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
SJPD1_RS14395	COG1749	Flagellar hook protein flgE
SJPD1_RS14400	COG1749	Flagellar hook protein flgE
SJPD1_RS14405	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
SJPD1_RS14410	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group