YH65_RS00005	SM00382	ATPases associated with a variety of cellular activities
YH65_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
YH65_RS00010	SM00480	DNA polymerase III beta subunit
YH65_RS00050	SM00478	endonuclease III
YH65_RS00150	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YH65_RS00160	SM00382	ATPases associated with a variety of cellular activities
YH65_RS00275	SM00248	ankyrin repeats
YH65_RS00295	SM00448	cheY-homologous receiver domain
YH65_RS00295	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS00300	SM00341	Helicase and RNase D C-terminal
YH65_RS00300	SM00487	DEAD-like helicases superfamily
YH65_RS00300	SM00490	helicase superfamily c-terminal domain
YH65_RS00300	SM00956	YH65_RS00300
YH65_RS00320	SM00358	Double-stranded RNA binding motif
YH65_RS00320	SM00535	Ribonuclease III family
YH65_RS00335	SM00400	zinc finger
YH65_RS00335	SM00493	YH65_RS00335
YH65_RS00355	SM00267	diguanylate cyclase
YH65_RS00355	SM00448	cheY-homologous receiver domain
YH65_RS00380	SM00518	AP endonuclease family 2
YH65_RS00425	SM00382	ATPases associated with a variety of cellular activities
YH65_RS00435	SM00450	Rhodanese Homology Domain
YH65_RS00465	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
YH65_RS00470	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YH65_RS00470	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YH65_RS00475	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YH65_RS00560	SM00072	Guanylate kinase homologues.
YH65_RS00570	SM00836	DALR anticodon binding domain
YH65_RS00570	SM01016	Arginyl tRNA synthetase N terminal dom
YH65_RS00590	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YH65_RS00615	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS00640	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS00675	SM00822	YH65_RS00675
YH65_RS00685	SM00448	cheY-homologous receiver domain
YH65_RS00685	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS00690	SM00387	Histidine kinase-like ATPases
YH65_RS00690	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS00705	SM00831	Cation transporter/ATPase, N-terminus
YH65_RS00710	SM00849	Metallo-beta-lactamase superfamily
YH65_RS00710	SM01027	Beta-Casp domain
YH65_RS00735	SM00710	Parallel beta-helix repeats
YH65_RS00735	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
YH65_RS00760	SM00382	ATPases associated with a variety of cellular activities
YH65_RS00805	SM00382	ATPases associated with a variety of cellular activities
YH65_RS00825	SM00825	Beta-ketoacyl synthase
YH65_RS00840	SM00487	DEAD-like helicases superfamily
YH65_RS00840	SM00490	helicase superfamily c-terminal domain
YH65_RS00875	SM00479	YH65_RS00875
YH65_RS00895	SM00487	DEAD-like helicases superfamily
YH65_RS00895	SM00490	helicase superfamily c-terminal domain
YH65_RS00945	SM01192	YH65_RS00945
YH65_RS00945	SM01193	YH65_RS00945
YH65_RS00965	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS00965	SM00876	Biotin and Thiamin Synthesis associated domain
YH65_RS00970	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
YH65_RS00970	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
YH65_RS00970	SM00493	YH65_RS00970
YH65_RS01000	SM00382	ATPases associated with a variety of cellular activities
YH65_RS01065	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YH65_RS01090	SM00852	Probable molybdopterin binding domain
YH65_RS01135	SM01007	Class II Aldolase and Adducin N-terminal domain
YH65_RS01190	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
YH65_RS01190	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
YH65_RS01195	SM00649	Ribosomal protein L11/L12
YH65_RS01220	SM00663	RNA polymerase I subunit A N-terminus
YH65_RS01235	SM00838	Elongation factor G C-terminus
YH65_RS01235	SM00889	Elongation factor G, domain IV
YH65_RS01255	SM00052	Putative diguanylate phosphodiesterase
YH65_RS01260	SM00387	Histidine kinase-like ATPases
YH65_RS01260	SM00433	TopoisomeraseII
YH65_RS01345	SM00710	Parallel beta-helix repeats
YH65_RS01395	SM00861	Transketolase, pyrimidine binding domain
YH65_RS01445	SM00020	Trypsin-like serine protease
YH65_RS01535	SM00267	diguanylate cyclase
YH65_RS01560	SM00487	DEAD-like helicases superfamily
YH65_RS01560	SM00490	helicase superfamily c-terminal domain
YH65_RS01620	SM01005	Alanine racemase, C-terminal domain
YH65_RS01685	SM00382	ATPases associated with a variety of cellular activities
YH65_RS01720	SM00382	ATPases associated with a variety of cellular activities
YH65_RS01730	SM00448	cheY-homologous receiver domain
YH65_RS01730	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS01735	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YH65_RS01735	SM00387	Histidine kinase-like ATPases
YH65_RS01735	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS01745	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS01755	SM01004	Delta-aminolevulinic acid dehydratase
YH65_RS01770	SM00387	Histidine kinase-like ATPases
YH65_RS01770	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS01770	SM00448	cheY-homologous receiver domain
YH65_RS01780	SM00387	Histidine kinase-like ATPases
YH65_RS01780	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS01780	SM00448	cheY-homologous receiver domain
YH65_RS01790	SM00421	helix_turn_helix, Lux Regulon
YH65_RS01790	SM00448	cheY-homologous receiver domain
YH65_RS01845	SM00382	ATPases associated with a variety of cellular activities
YH65_RS01845	SM01086	C-terminal, D2-small domain, of ClpB protein
YH65_RS01860	SM00382	ATPases associated with a variety of cellular activities
YH65_RS01885	SM00830	Chorismate mutase type II
YH65_RS01900	SM00861	Transketolase, pyrimidine binding domain
YH65_RS01915	SM00562	YH65_RS01915
YH65_RS01945	SM00382	ATPases associated with a variety of cellular activities
YH65_RS01980	SM00487	DEAD-like helicases superfamily
YH65_RS01980	SM00490	helicase superfamily c-terminal domain
YH65_RS01980	SM00982	YH65_RS01980
YH65_RS01980	SM01058	CarD-like/TRCF domain
YH65_RS01985	SM00448	cheY-homologous receiver domain
YH65_RS01985	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS01990	SM00387	Histidine kinase-like ATPases
YH65_RS02020	SM00327	von Willebrand factor (vWF) type A domain
YH65_RS02025	SM00327	von Willebrand factor (vWF) type A domain
YH65_RS02030	SM00028	Tetratricopeptide repeats
YH65_RS02085	SM00448	cheY-homologous receiver domain
YH65_RS02085	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS02090	SM00905	Dihydroneopterin aldolase
YH65_RS02095	SM01207	YH65_RS02095
YH65_RS02170	SM00052	Putative diguanylate phosphodiesterase
YH65_RS02170	SM00267	diguanylate cyclase
YH65_RS02180	SM00883	Chaperonin 10 Kd subunit
YH65_RS02200	SM00917	LeuA allosteric (dimerisation) domain
YH65_RS02210	SM00382	ATPases associated with a variety of cellular activities
YH65_RS02270	SM00382	ATPases associated with a variety of cellular activities
YH65_RS02355	SM00382	ATPases associated with a variety of cellular activities
YH65_RS02430	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
YH65_RS02435	SM00357	Cold shock protein domain
YH65_RS02435	SM00382	ATPases associated with a variety of cellular activities
YH65_RS02435	SM00959	Rho termination factor, N-terminal domain
YH65_RS02495	SM00487	DEAD-like helicases superfamily
YH65_RS02495	SM00490	helicase superfamily c-terminal domain
YH65_RS02520	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
YH65_RS02535	SM00382	ATPases associated with a variety of cellular activities
YH65_RS02535	SM00464	Found in ATP-dependent protease La (LON)
YH65_RS02545	SM00387	Histidine kinase-like ATPases
YH65_RS02545	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS02545	SM00448	cheY-homologous receiver domain
YH65_RS02555	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YH65_RS02560	SM00465	GIY-YIG type nucleases (URI domain)
YH65_RS02630	SM00387	Histidine kinase-like ATPases
YH65_RS02645	SM01209	YH65_RS02645
YH65_RS02645	SM01210	YH65_RS02645
YH65_RS02660	SM00271	DnaJ molecular chaperone homology domain
YH65_RS02670	SM00316	Ribosomal protein S1-like RNA-binding domain
YH65_RS02670	SM00322	K homology RNA-binding domain
YH65_RS02685	SM00411	bacterial (prokaryotic) histone like domain
YH65_RS02705	SM00271	DnaJ molecular chaperone homology domain
YH65_RS02710	SM00886	Stress responsive A/B Barrel Domain
YH65_RS02730	SM01387	YH65_RS02730
YH65_RS02750	SM00830	Chorismate mutase type II
YH65_RS02760	SM00448	cheY-homologous receiver domain
YH65_RS02760	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS02765	SM00387	Histidine kinase-like ATPases
YH65_RS02765	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS02770	SM00116	Domain in cystathionine beta-synthase and other proteins.
YH65_RS02790	SM00900	YH65_RS02790
YH65_RS02820	SM00316	Ribosomal protein S1-like RNA-binding domain
YH65_RS02870	SM00387	Histidine kinase-like ATPases
YH65_RS02870	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS02870	SM00448	cheY-homologous receiver domain
YH65_RS02915	SM00881	CoA binding domain
YH65_RS02930	SM00450	Rhodanese Homology Domain
YH65_RS02945	SM00448	cheY-homologous receiver domain
YH65_RS02945	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS02950	SM00387	Histidine kinase-like ATPases
YH65_RS02950	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS02950	SM00849	Metallo-beta-lactamase superfamily
YH65_RS02975	SM00091	PAS domain
YH65_RS02980	SM01018	B12 binding domain
YH65_RS02985	SM00382	ATPases associated with a variety of cellular activities
YH65_RS03020	SM00478	endonuclease III
YH65_RS03115	SM00116	Domain in cystathionine beta-synthase and other proteins.
YH65_RS03115	SM01240	YH65_RS03115
YH65_RS03195	SM00470	ParB-like nuclease domain
YH65_RS03225	SM00382	ATPases associated with a variety of cellular activities
YH65_RS03300	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
YH65_RS03330	SM00363	S4 RNA-binding domain
YH65_RS03345	SM00382	ATPases associated with a variety of cellular activities
YH65_RS03365	SM01409	YH65_RS03365
YH65_RS03370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YH65_RS03370	SM00954	Region found in RelA / SpoT proteins
YH65_RS03375	SM00363	S4 RNA-binding domain
YH65_RS03385	SM00646	YH65_RS03385
YH65_RS03390	SM00646	YH65_RS03390
YH65_RS03405	SM00852	Probable molybdopterin binding domain
YH65_RS03410	SM00052	Putative diguanylate phosphodiesterase
YH65_RS03410	SM00267	diguanylate cyclase
YH65_RS03440	SM01329	YH65_RS03440
YH65_RS03510	SM00028	Tetratricopeptide repeats
YH65_RS03560	SM00382	ATPases associated with a variety of cellular activities
YH65_RS03560	SM01086	C-terminal, D2-small domain, of ClpB protein
YH65_RS03590	SM00382	ATPases associated with a variety of cellular activities
YH65_RS03630	SM00938	Nitrogen regulatory protein P-II
YH65_RS03640	SM00938	Nitrogen regulatory protein P-II
YH65_RS03665	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS03670	SM00849	Metallo-beta-lactamase superfamily
YH65_RS03750	SM00434	DNA Topoisomerase IV
YH65_RS03755	SM00859	Semialdehyde dehydrogenase, NAD binding domain
YH65_RS03770	SM00530	Helix-turn-helix XRE-family like proteins 
YH65_RS03810	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YH65_RS03810	SM00316	Ribosomal protein S1-like RNA-binding domain
YH65_RS03810	SM00732	Likely ribonuclease with RNase H fold.
YH65_RS03820	SM00479	YH65_RS03820
YH65_RS03880	SM00448	cheY-homologous receiver domain
YH65_RS03880	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS03885	SM00387	Histidine kinase-like ATPases
YH65_RS03885	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS03970	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YH65_RS03970	SM00387	Histidine kinase-like ATPases
YH65_RS03970	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS03970	SM00448	cheY-homologous receiver domain
YH65_RS03975	SM00052	Putative diguanylate phosphodiesterase
YH65_RS03975	SM00267	diguanylate cyclase
YH65_RS03995	SM00382	ATPases associated with a variety of cellular activities
YH65_RS03995	SM00962	SRP54-type protein, GTPase domain
YH65_RS04015	SM01400	YH65_RS04015
YH65_RS04020	SM00838	Elongation factor G C-terminus
YH65_RS04055	SM00060	Fibronectin type 3 domain
YH65_RS04055	SM00631	YH65_RS04055
YH65_RS04075	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04075	SM00843	YH65_RS04075
YH65_RS04115	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04240	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YH65_RS04285	SM00448	cheY-homologous receiver domain
YH65_RS04290	SM00220	Serine/Threonine protein kinases, catalytic domain
YH65_RS04290	SM00331	Sigma factor PP2C-like phosphatases
YH65_RS04290	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
YH65_RS04315	SM00957	SecA DEAD-like domain
YH65_RS04315	SM00958	SecA preprotein cross-linking domain
YH65_RS04345	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04350	SM00903	Flavin reductase like domain
YH65_RS04405	SM01321	YH65_RS04405
YH65_RS04435	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04445	SM00880	YH65_RS04445
YH65_RS04470	SM00851	MGS-like domain
YH65_RS04470	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
YH65_RS04485	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04485	SM00994	ClpX C4-type zinc finger
YH65_RS04485	SM01086	C-terminal, D2-small domain, of ClpB protein
YH65_RS04510	SM00450	Rhodanese Homology Domain
YH65_RS04605	SM00644	YH65_RS04605
YH65_RS04660	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04725	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04730	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS04765	SM00382	ATPases associated with a variety of cellular activities
YH65_RS04790	SM00479	YH65_RS04790
YH65_RS04850	SM00052	Putative diguanylate phosphodiesterase
YH65_RS04850	SM00267	diguanylate cyclase
YH65_RS04855	SM00897	FIST N domain
YH65_RS04855	SM01204	YH65_RS04855
YH65_RS04865	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
YH65_RS04910	SM00506	Appr-1"-p processing enzyme
YH65_RS04915	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS04950	SM00849	Metallo-beta-lactamase superfamily
YH65_RS05080	SM00357	Cold shock protein domain
YH65_RS05115	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
YH65_RS05165	SM00465	GIY-YIG type nucleases (URI domain)
YH65_RS05185	SM00382	ATPases associated with a variety of cellular activities
YH65_RS05210	SM00845	GatB domain
YH65_RS05215	SM00450	Rhodanese Homology Domain
YH65_RS05225	SM00487	DEAD-like helicases superfamily
YH65_RS05225	SM00490	helicase superfamily c-terminal domain
YH65_RS05235	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YH65_RS05235	SM00481	DNA polymerase alpha chain like domain
YH65_RS05235	SM00483	DNA polymerase X family
YH65_RS05255	SM00382	ATPases associated with a variety of cellular activities
YH65_RS05265	SM00981	YH65_RS05265
YH65_RS05290	SM00052	Putative diguanylate phosphodiesterase
YH65_RS05290	SM00091	PAS domain
YH65_RS05290	SM00267	diguanylate cyclase
YH65_RS05295	SM00671	Sel1-like repeats.
YH65_RS05350	SM00563	Phosphate acyltransferases
YH65_RS05360	SM01211	YH65_RS05360
YH65_RS05375	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YH65_RS05375	SM00245	tail specific protease
YH65_RS05385	SM00382	ATPases associated with a variety of cellular activities
YH65_RS05385	SM01086	C-terminal, D2-small domain, of ClpB protein
YH65_RS05390	SM01007	Class II Aldolase and Adducin N-terminal domain
YH65_RS05455	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS05460	SM00382	ATPases associated with a variety of cellular activities
YH65_RS05475	SM01321	YH65_RS05475
YH65_RS05490	SM00487	DEAD-like helicases superfamily
YH65_RS05490	SM00490	helicase superfamily c-terminal domain
YH65_RS05560	SM01131	YH65_RS05560
YH65_RS05565	SM00487	DEAD-like helicases superfamily
YH65_RS05565	SM00490	helicase superfamily c-terminal domain
YH65_RS05570	SM00382	ATPases associated with a variety of cellular activities
YH65_RS05595	SM00014	Acid phosphatase homologues
YH65_RS05660	SM01057	Eukaryotic-type carbonic anhydrase
YH65_RS05675	SM00852	Probable molybdopterin binding domain
YH65_RS05680	SM00267	diguanylate cyclase
YH65_RS05685	SM00897	FIST N domain
YH65_RS05685	SM01204	YH65_RS05685
YH65_RS05720	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
YH65_RS05725	SM00267	diguanylate cyclase
YH65_RS05770	SM01118	YH65_RS05770
YH65_RS05800	SM00478	endonuclease III
YH65_RS05830	SM01235	YH65_RS05830
YH65_RS05840	SM00062	Bacterial periplasmic substrate-binding proteins
YH65_RS05840	SM00267	diguanylate cyclase
YH65_RS05870	SM01133	YH65_RS05870
YH65_RS05875	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YH65_RS05880	SM01192	YH65_RS05880
YH65_RS05880	SM01193	YH65_RS05880
YH65_RS05935	SM00831	Cation transporter/ATPase, N-terminus
YH65_RS05940	SM00855	Phosphoglycerate mutase family
YH65_RS05960	SM00849	Metallo-beta-lactamase superfamily
YH65_RS05960	SM01027	Beta-Casp domain
YH65_RS05975	SM00986	Uracil DNA glycosylase superfamily
YH65_RS05975	SM00987	UreE urease accessory protein, C-terminal domain 
YH65_RS06000	SM00479	YH65_RS06000
YH65_RS06005	SM00100	Cyclic nucleotide-monophosphate binding domain
YH65_RS06005	SM00116	Domain in cystathionine beta-synthase and other proteins.
YH65_RS06025	SM00448	cheY-homologous receiver domain
YH65_RS06025	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS06030	SM00387	Histidine kinase-like ATPases
YH65_RS06030	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS06030	SM01049	YH65_RS06030
YH65_RS06080	SM00967	RNA 2'-O ribose methyltransferase substrate binding
YH65_RS06105	SM00487	DEAD-like helicases superfamily
YH65_RS06105	SM00490	helicase superfamily c-terminal domain
YH65_RS06115	SM00116	Domain in cystathionine beta-synthase and other proteins.
YH65_RS06115	SM00924	MgtE intracellular N domain
YH65_RS06135	SM00563	Phosphate acyltransferases
YH65_RS06170	SM00981	YH65_RS06170
YH65_RS06235	SM00226	Low molecular weight phosphatase family
YH65_RS06240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
YH65_RS06255	SM00267	diguanylate cyclase
YH65_RS06260	SM00924	MgtE intracellular N domain
YH65_RS06270	SM00899	YH65_RS06270
YH65_RS06290	SM00448	cheY-homologous receiver domain
YH65_RS06290	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS06295	SM00387	Histidine kinase-like ATPases
YH65_RS06295	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS06310	SM00382	ATPases associated with a variety of cellular activities
YH65_RS06385	SM00450	Rhodanese Homology Domain
YH65_RS06460	SM00382	ATPases associated with a variety of cellular activities
YH65_RS06495	SM00487	DEAD-like helicases superfamily
YH65_RS06495	SM00490	helicase superfamily c-terminal domain
YH65_RS06505	SM00382	ATPases associated with a variety of cellular activities
YH65_RS06530	SM00859	Semialdehyde dehydrogenase, NAD binding domain
YH65_RS06575	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
YH65_RS06575	SM00474	3'-5' exonuclease
YH65_RS06575	SM00475	5'-3' exonuclease
YH65_RS06575	SM00482	DNA polymerase A domain
YH65_RS06675	SM00448	cheY-homologous receiver domain
YH65_RS06675	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS06680	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
YH65_RS06725	SM00382	ATPases associated with a variety of cellular activities
YH65_RS06760	SM00052	Putative diguanylate phosphodiesterase
YH65_RS06760	SM00267	diguanylate cyclase
YH65_RS06775	SM00861	Transketolase, pyrimidine binding domain
YH65_RS06810	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS06830	SM00387	Histidine kinase-like ATPases
YH65_RS06830	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS06830	SM00448	cheY-homologous receiver domain
YH65_RS06835	SM00382	ATPases associated with a variety of cellular activities
YH65_RS06890	SM00450	Rhodanese Homology Domain
YH65_RS06935	SM00382	ATPases associated with a variety of cellular activities
YH65_RS07145	SM00422	helix_turn_helix, mercury resistance
YH65_RS07150	SM00271	DnaJ molecular chaperone homology domain
YH65_RS07160	SM00798	AICARFT/IMPCHase bienzyme
YH65_RS07160	SM00851	MGS-like domain
YH65_RS07180	SM00671	Sel1-like repeats.
YH65_RS07190	SM01245	YH65_RS07190
YH65_RS07245	SM00845	GatB domain
YH65_RS07265	SM00382	ATPases associated with a variety of cellular activities
YH65_RS07280	SM00363	S4 RNA-binding domain
YH65_RS07305	SM00382	ATPases associated with a variety of cellular activities
YH65_RS07385	SM00382	ATPases associated with a variety of cellular activities
YH65_RS07395	SM00487	DEAD-like helicases superfamily
YH65_RS07395	SM00490	helicase superfamily c-terminal domain
YH65_RS07395	SM00847	Helicase associated domain (HA2)  Add an annotation
YH65_RS07400	SM01235	YH65_RS07400
YH65_RS07460	SM00331	Sigma factor PP2C-like phosphatases
YH65_RS07555	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YH65_RS07570	SM00840	YH65_RS07570
YH65_RS07575	SM01321	YH65_RS07575
YH65_RS07610	SM01130	YH65_RS07610
YH65_RS07635	SM00899	YH65_RS07635
YH65_RS07685	SM00448	cheY-homologous receiver domain
YH65_RS07685	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS07705	SM00746	metallochaperone-like domain
YH65_RS07710	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
YH65_RS07715	SM00450	Rhodanese Homology Domain
YH65_RS07725	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
YH65_RS07730	SM00450	Rhodanese Homology Domain
YH65_RS07740	SM00448	cheY-homologous receiver domain
YH65_RS07740	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS07745	SM00387	Histidine kinase-like ATPases
YH65_RS07755	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
YH65_RS07780	SM00448	cheY-homologous receiver domain
YH65_RS07780	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS07785	SM00387	Histidine kinase-like ATPases
YH65_RS07785	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS07835	SM00448	cheY-homologous receiver domain
YH65_RS07835	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS07840	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS07880	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
YH65_RS07960	SM01007	Class II Aldolase and Adducin N-terminal domain
YH65_RS07985	SM00842	Cell division protein FtsA
YH65_RS07990	SM00864	Tubulin/FtsZ family, GTPase domain
YH65_RS07990	SM00865	Tubulin/FtsZ family, C-terminal domain
YH65_RS08015	SM00986	Uracil DNA glycosylase superfamily
YH65_RS08015	SM00987	UreE urease accessory protein, C-terminal domain 
YH65_RS08040	SM00382	ATPases associated with a variety of cellular activities
YH65_RS08060	SM00322	K homology RNA-binding domain
YH65_RS08060	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YH65_RS08075	SM00382	ATPases associated with a variety of cellular activities
YH65_RS08075	SM00962	SRP54-type protein, GTPase domain
YH65_RS08080	SM00563	Phosphate acyltransferases
YH65_RS08085	SM00382	ATPases associated with a variety of cellular activities
YH65_RS08115	SM00487	DEAD-like helicases superfamily
YH65_RS08155	SM00564	beta-propeller repeat
YH65_RS08170	SM00448	cheY-homologous receiver domain
YH65_RS08170	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS08230	SM00671	Sel1-like repeats.
YH65_RS08260	SM00881	CoA binding domain
YH65_RS08305	SM00481	DNA polymerase alpha chain like domain
YH65_RS08350	SM00841	Elongation factor P, C-terminal
YH65_RS08350	SM01185	YH65_RS08350
YH65_RS08380	SM00316	Ribosomal protein S1-like RNA-binding domain
YH65_RS08395	SM00873	B3/4 domain
YH65_RS08395	SM00874	tRNA synthetase B5 domain
YH65_RS08395	SM00896	Ferredoxin-fold anticodon binding domain
YH65_RS08455	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS08475	SM00382	ATPases associated with a variety of cellular activities
YH65_RS08550	SM00448	cheY-homologous receiver domain
YH65_RS08575	SM00919	Malic enzyme, NAD binding domain
YH65_RS08575	SM01274	YH65_RS08575
YH65_RS08600	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YH65_RS08700	SM00849	Metallo-beta-lactamase superfamily
YH65_RS08735	SM00387	Histidine kinase-like ATPases
YH65_RS08735	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS08740	SM00448	cheY-homologous receiver domain
YH65_RS08740	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS08760	SM00387	Histidine kinase-like ATPases
YH65_RS08760	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS08775	SM00450	Rhodanese Homology Domain
YH65_RS08795	SM00382	ATPases associated with a variety of cellular activities
YH65_RS08880	SM00448	cheY-homologous receiver domain
YH65_RS08880	SM00862	Transcriptional regulatory protein, C terminal
YH65_RS08885	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
YH65_RS08885	SM00387	Histidine kinase-like ATPases
YH65_RS08885	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS08900	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YH65_RS08900	SM00091	PAS domain
YH65_RS08900	SM00267	diguanylate cyclase
YH65_RS08900	SM00448	cheY-homologous receiver domain
YH65_RS08905	SM00904	Riboflavin kinase
YH65_RS08910	SM00363	S4 RNA-binding domain
YH65_RS08915	SM00278	Helix-hairpin-helix DNA-binding motif class 1
YH65_RS08915	SM00292	breast cancer carboxy-terminal domain
YH65_RS08915	SM00532	Ligase N family
YH65_RS08950	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS08980	SM00387	Histidine kinase-like ATPases
YH65_RS08980	SM00448	cheY-homologous receiver domain
YH65_RS08985	SM00732	Likely ribonuclease with RNase H fold.
YH65_RS09025	SM00244	prohibitin homologues
YH65_RS09035	SM01060	YH65_RS09035
YH65_RS09065	SM00955	YH65_RS09065
YH65_RS09125	SM00463	Small MutS-related domain
YH65_RS09125	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
YH65_RS09125	SM00534	ATPase domain of DNA mismatch repair MUTS family
YH65_RS09210	SM01323	YH65_RS09210
YH65_RS09220	SM01234	YH65_RS09220
YH65_RS09230	SM00947	Carbonic anhydrase
YH65_RS09285	SM00100	Cyclic nucleotide-monophosphate binding domain
YH65_RS09335	SM00382	ATPases associated with a variety of cellular activities
YH65_RS09335	SM00962	SRP54-type protein, GTPase domain
YH65_RS09335	SM00963	SRP54-type protein, helical bundle domain
YH65_RS09345	SM01152	YH65_RS09345
YH65_RS09385	SM01001	AIR carboxylase
YH65_RS09400	SM01230	YH65_RS09400
YH65_RS09430	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
YH65_RS09465	SM00937	YH65_RS09465
YH65_RS09470	SM00382	ATPases associated with a variety of cellular activities
YH65_RS09565	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YH65_RS09600	SM00100	Cyclic nucleotide-monophosphate binding domain
YH65_RS09600	SM00419	helix_turn_helix, cAMP Regulatory protein
YH65_RS09610	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS09640	SM00382	ATPases associated with a variety of cellular activities
YH65_RS09695	SM00342	helix_turn_helix, arabinose operon control protein
YH65_RS09760	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
YH65_RS09840	SM00244	prohibitin homologues
YH65_RS09900	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
YH65_RS09935	SM00967	RNA 2'-O ribose methyltransferase substrate binding
YH65_RS09960	SM00852	Probable molybdopterin binding domain
YH65_RS10000	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS10025	SM01228	YH65_RS10025
YH65_RS10080	SM00382	ATPases associated with a variety of cellular activities
YH65_RS10175	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
YH65_RS10185	SM00788	Adenylosuccinate synthetase
YH65_RS10260	SM00382	ATPases associated with a variety of cellular activities
YH65_RS10315	SM00857	Resolvase, N terminal domain
YH65_RS10355	SM00937	YH65_RS10355
YH65_RS10395	SM00028	Tetratricopeptide repeats
YH65_RS10410	SM00849	Metallo-beta-lactamase superfamily
YH65_RS10460	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
YH65_RS10475	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
YH65_RS10475	SM00534	ATPase domain of DNA mismatch repair MUTS family
YH65_RS10535	SM00671	Sel1-like repeats.
YH65_RS10555	SM01403	YH65_RS10555
YH65_RS10575	SM01382	YH65_RS10575
YH65_RS10575	SM01383	YH65_RS10575
YH65_RS10610	SM01374	YH65_RS10610
YH65_RS10615	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
YH65_RS10665	SM00316	Ribosomal protein S1-like RNA-binding domain
YH65_RS10685	SM00363	S4 RNA-binding domain
YH65_RS10685	SM01390	YH65_RS10685
YH65_RS10690	SM00662	RNA polymerases D
YH65_RS10700	SM00450	Rhodanese Homology Domain
YH65_RS10735	SM00257	Lysin motif
YH65_RS10835	SM00382	ATPases associated with a variety of cellular activities
YH65_RS10840	SM00363	S4 RNA-binding domain
YH65_RS10845	SM00116	Domain in cystathionine beta-synthase and other proteins.
YH65_RS10850	SM00849	Metallo-beta-lactamase superfamily
YH65_RS10855	SM00650	Ribosomal RNA adenine dimethylases
YH65_RS10870	SM00729	Elongator protein 3, MiaB family, Radical SAM
YH65_RS10880	SM00998	Adenylosuccinate lyase C-terminus
YH65_RS10935	SM00382	ATPases associated with a variety of cellular activities
YH65_RS10945	SM00028	Tetratricopeptide repeats
YH65_RS10945	SM00327	von Willebrand factor (vWF) type A domain
YH65_RS10950	SM00327	von Willebrand factor (vWF) type A domain
YH65_RS10970	SM00671	Sel1-like repeats.
YH65_RS10980	SM00267	diguanylate cyclase
YH65_RS10985	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
YH65_RS11130	SM00028	Tetratricopeptide repeats
YH65_RS11130	SM00671	Sel1-like repeats.
YH65_RS11135	SM00387	Histidine kinase-like ATPases
YH65_RS11135	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS11135	SM00448	cheY-homologous receiver domain
YH65_RS11135	SM00897	FIST N domain
YH65_RS11135	SM01204	YH65_RS11135
YH65_RS11165	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YH65_RS11165	SM00091	PAS domain
YH65_RS11165	SM00387	Histidine kinase-like ATPases
YH65_RS11165	SM00388	His Kinase A (phosphoacceptor) domain
YH65_RS11175	SM00736	Dystroglycan-type cadherin-like domains.
YH65_RS11195	SM00052	Putative diguanylate phosphodiesterase
YH65_RS11195	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YH65_RS11195	SM00091	PAS domain
YH65_RS11195	SM00267	diguanylate cyclase
YH65_RS11205	SM00327	von Willebrand factor (vWF) type A domain
YH65_RS11215	SM00710	Parallel beta-helix repeats
YH65_RS11225	SM00052	Putative diguanylate phosphodiesterase
YH65_RS11225	SM00267	diguanylate cyclase
YH65_RS11240	SM00052	Putative diguanylate phosphodiesterase
YH65_RS11240	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
YH65_RS11240	SM00091	PAS domain
YH65_RS11240	SM00267	diguanylate cyclase
YH65_RS11240	SM00897	FIST N domain
YH65_RS11240	SM01204	YH65_RS11240
YH65_RS11270	SM00342	helix_turn_helix, arabinose operon control protein
YH65_RS11280	SM00014	Acid phosphatase homologues
YH65_RS11295	SM00671	Sel1-like repeats.
YH65_RS11310	SM00671	Sel1-like repeats.
