STH_RS00005	SM00382	ATPases associated with a variety of cellular activities
STH_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
STH_RS00010	SM00480	DNA polymerase III beta subunit
STH_RS00030	SM00387	Histidine kinase-like ATPases
STH_RS00030	SM00433	TopoisomeraseII
STH_RS00035	SM00434	DNA Topoisomerase IV
STH_RS00070	SM00382	ATPases associated with a variety of cellular activities
STH_RS00080	SM00278	Helix-hairpin-helix DNA-binding motif class 1
STH_RS00080	SM00493	STH_RS00080
STH_RS00175	SM00836	DALR anticodon binding domain
STH_RS00175	SM01016	Arginyl tRNA synthetase N terminal dom
STH_RS00190	SM01116	STH_RS00190
STH_RS00275	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS00325	SM00382	ATPases associated with a variety of cellular activities
STH_RS00345	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
STH_RS00345	SM00245	tail specific protease
STH_RS00410	SM00937	STH_RS00410
STH_RS00425	SM00226	Low molecular weight phosphatase family
STH_RS00500	SM00382	ATPases associated with a variety of cellular activities
STH_RS00530	SM00345	helix_turn_helix gluconate operon transcriptional repressor
STH_RS00530	SM00895	STH_RS00530
STH_RS00540	SM00382	ATPases associated with a variety of cellular activities
STH_RS00585	SM00450	Rhodanese Homology Domain
STH_RS00590	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS00610	SM00363	S4 RNA-binding domain
STH_RS00610	SM01390	STH_RS00610
STH_RS00665	SM00957	SecA DEAD-like domain
STH_RS00665	SM00958	SecA preprotein cross-linking domain
STH_RS00670	SM00382	ATPases associated with a variety of cellular activities
STH_RS00720	SM00937	STH_RS00720
STH_RS00735	SM00382	ATPases associated with a variety of cellular activities
STH_RS00750	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
STH_RS00750	SM00245	tail specific protease
STH_RS00795	SM00487	DEAD-like helicases superfamily
STH_RS00795	SM00490	helicase superfamily c-terminal domain
STH_RS00870	SM00507	HNH nucleases
STH_RS00875	SM00382	ATPases associated with a variety of cellular activities
STH_RS00895	SM00278	Helix-hairpin-helix DNA-binding motif class 1
STH_RS00895	SM00465	GIY-YIG type nucleases (URI domain)
STH_RS00980	SM01007	Class II Aldolase and Adducin N-terminal domain
STH_RS00995	SM00881	CoA binding domain
STH_RS01015	SM00909	Sporulation and spore germination
STH_RS01025	SM01230	STH_RS01025
STH_RS01085	SM00347	helix_turn_helix multiple antibiotic resistance protein
STH_RS01085	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS01125	SM00382	ATPases associated with a variety of cellular activities
STH_RS01130	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
STH_RS01160	SM00448	cheY-homologous receiver domain
STH_RS01225	SM00382	ATPases associated with a variety of cellular activities
STH_RS01280	SM01192	STH_RS01280
STH_RS01280	SM01193	STH_RS01280
STH_RS01300	SM00382	ATPases associated with a variety of cellular activities
STH_RS01300	SM00930	STH_RS01300
STH_RS01485	SM00382	ATPases associated with a variety of cellular activities
STH_RS01490	SM00382	ATPases associated with a variety of cellular activities
STH_RS01575	SM00382	ATPases associated with a variety of cellular activities
STH_RS01580	SM00382	ATPases associated with a variety of cellular activities
STH_RS01715	SM00646	STH_RS01715
STH_RS01740	SM00857	Resolvase, N terminal domain
STH_RS01755	SM00316	Ribosomal protein S1-like RNA-binding domain
STH_RS01755	SM00357	Cold shock protein domain
STH_RS01755	SM00955	STH_RS01755
STH_RS01765	SM00347	helix_turn_helix multiple antibiotic resistance protein
STH_RS01850	SM01061	CAT RNA binding domain
STH_RS01860	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS01860	SM00876	Biotin and Thiamin Synthesis associated domain
STH_RS01865	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS01865	SM00876	Biotin and Thiamin Synthesis associated domain
STH_RS01870	SM00450	Rhodanese Homology Domain
STH_RS01875	SM00450	Rhodanese Homology Domain
STH_RS01890	SM00382	ATPases associated with a variety of cellular activities
STH_RS01890	SM00994	ClpX C4-type zinc finger
STH_RS01890	SM01086	C-terminal, D2-small domain, of ClpB protein
STH_RS01895	SM00382	ATPases associated with a variety of cellular activities
STH_RS01900	SM00382	ATPases associated with a variety of cellular activities
STH_RS01900	SM00464	Found in ATP-dependent protease La (LON)
STH_RS01910	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS01910	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS01990	SM00796	Allophanate hydrolase subunit 1
STH_RS01990	SM00797	Allophanate hydrolase subunit 2
STH_RS02005	SM00382	ATPases associated with a variety of cellular activities
STH_RS02035	SM00858	STH_RS02035
STH_RS02130	SM00028	Tetratricopeptide repeats
STH_RS02145	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS02155	SM00861	Transketolase, pyrimidine binding domain
STH_RS02170	SM00448	cheY-homologous receiver domain
STH_RS02170	SM00862	Transcriptional regulatory protein, C terminal
STH_RS02175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS02175	SM00387	Histidine kinase-like ATPases
STH_RS02175	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS02180	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
STH_RS02215	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS02230	SM00316	Ribosomal protein S1-like RNA-binding domain
STH_RS02265	SM01103	STH_RS02265
STH_RS02275	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS02290	SM00091	PAS domain
STH_RS02290	SM00382	ATPases associated with a variety of cellular activities
STH_RS02355	SM00382	ATPases associated with a variety of cellular activities
STH_RS02360	SM00382	ATPases associated with a variety of cellular activities
STH_RS02370	SM00278	Helix-hairpin-helix DNA-binding motif class 1
STH_RS02390	SM00518	AP endonuclease family 2
STH_RS02410	SM00382	ATPases associated with a variety of cellular activities
STH_RS02450	SM00382	ATPases associated with a variety of cellular activities
STH_RS02460	SM00849	Metallo-beta-lactamase superfamily
STH_RS02490	SM00636	STH_RS02490
STH_RS02510	SM00838	Elongation factor G C-terminus
STH_RS02515	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS02545	SM00062	Bacterial periplasmic substrate-binding proteins
STH_RS02550	SM00382	ATPases associated with a variety of cellular activities
STH_RS02555	SM00421	helix_turn_helix, Lux Regulon
STH_RS02555	SM00448	cheY-homologous receiver domain
STH_RS02620	SM00271	DnaJ molecular chaperone homology domain
STH_RS02680	SM00852	Probable molybdopterin binding domain
STH_RS02745	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS02780	SM00257	Lysin motif
STH_RS02780	SM00636	STH_RS02780
STH_RS02790	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS02790	SM00924	MgtE intracellular N domain
STH_RS02830	SM00382	ATPases associated with a variety of cellular activities
STH_RS02910	SM00345	helix_turn_helix gluconate operon transcriptional repressor
STH_RS02910	SM00866	STH_RS02910
STH_RS02920	SM01133	STH_RS02920
STH_RS02980	SM00822	STH_RS02980
STH_RS03030	SM00400	zinc finger
STH_RS03030	SM00493	STH_RS03030
STH_RS03030	SM00766	DNA primase DnaG DnaB-binding
STH_RS03065	SM00822	STH_RS03065
STH_RS03085	SM00382	ATPases associated with a variety of cellular activities
STH_RS03130	SM00382	ATPases associated with a variety of cellular activities
STH_RS03250	SM00382	ATPases associated with a variety of cellular activities
STH_RS03255	SM00382	ATPases associated with a variety of cellular activities
STH_RS03315	SM00091	PAS domain
STH_RS03315	SM00382	ATPases associated with a variety of cellular activities
STH_RS03335	SM00382	ATPases associated with a variety of cellular activities
STH_RS03340	SM00421	helix_turn_helix, Lux Regulon
STH_RS03340	SM00448	cheY-homologous receiver domain
STH_RS03360	SM00382	ATPases associated with a variety of cellular activities
STH_RS03380	SM00487	DEAD-like helicases superfamily
STH_RS03380	SM00490	helicase superfamily c-terminal domain
STH_RS03390	SM00481	DNA polymerase alpha chain like domain
STH_RS03440	SM01101	STH_RS03440
STH_RS03465	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS03465	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS03470	SM00382	ATPases associated with a variety of cellular activities
STH_RS03515	SM00506	Appr-1"-p processing enzyme
STH_RS03530	SM00382	ATPases associated with a variety of cellular activities
STH_RS03535	SM00448	cheY-homologous receiver domain
STH_RS03535	SM00862	Transcriptional regulatory protein, C terminal
STH_RS03560	SM00382	ATPases associated with a variety of cellular activities
STH_RS03575	SM00867	YceI-like domain 
STH_RS03590	SM00091	PAS domain
STH_RS03590	SM00382	ATPases associated with a variety of cellular activities
STH_RS03600	SM00382	ATPases associated with a variety of cellular activities
STH_RS03625	SM00382	ATPases associated with a variety of cellular activities
STH_RS03650	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS03675	SM00060	Fibronectin type 3 domain
STH_RS03675	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
STH_RS03700	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS03700	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS03740	SM00448	cheY-homologous receiver domain
STH_RS03740	SM00862	Transcriptional regulatory protein, C terminal
STH_RS03745	SM00387	Histidine kinase-like ATPases
STH_RS03745	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS03750	SM00028	Tetratricopeptide repeats
STH_RS03785	SM00257	Lysin motif
STH_RS03795	SM00028	Tetratricopeptide repeats
STH_RS03810	SM00382	ATPases associated with a variety of cellular activities
STH_RS03825	SM00091	PAS domain
STH_RS03825	SM00387	Histidine kinase-like ATPases
STH_RS03825	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS03830	SM00448	cheY-homologous receiver domain
STH_RS03830	SM00862	Transcriptional regulatory protein, C terminal
STH_RS03950	SM00382	ATPases associated with a variety of cellular activities
STH_RS03960	SM00382	ATPases associated with a variety of cellular activities
STH_RS04005	SM00354	helix_turn _helix lactose operon repressor
STH_RS04020	SM00382	ATPases associated with a variety of cellular activities
STH_RS04080	SM00984	UDP binding domain
STH_RS04095	SM00763	PrkA AAA domain
STH_RS04115	SM00420	helix_turn_helix, Deoxyribose operon repressor
STH_RS04115	SM01134	STH_RS04115
STH_RS04145	SM00382	ATPases associated with a variety of cellular activities
STH_RS04150	SM00382	ATPases associated with a variety of cellular activities
STH_RS04175	SM00822	STH_RS04175
STH_RS04195	SM00862	Transcriptional regulatory protein, C terminal
STH_RS04195	SM01043	Bacterial transcriptional activator domain
STH_RS04220	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS04255	SM00382	ATPases associated with a variety of cellular activities
STH_RS04260	SM00382	ATPases associated with a variety of cellular activities
STH_RS04265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS04265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS04295	SM00862	Transcriptional regulatory protein, C terminal
STH_RS04295	SM01043	Bacterial transcriptional activator domain
STH_RS04355	SM00091	PAS domain
STH_RS04355	SM00387	Histidine kinase-like ATPases
STH_RS04355	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS04360	SM00448	cheY-homologous receiver domain
STH_RS04385	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
STH_RS04385	SM00475	5'-3' exonuclease
STH_RS04385	SM00482	DNA polymerase A domain
STH_RS04390	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
STH_RS04390	SM01232	STH_RS04390
STH_RS04425	SM00382	ATPases associated with a variety of cellular activities
STH_RS04465	SM00903	Flavin reductase like domain
STH_RS04500	SM00382	ATPases associated with a variety of cellular activities
STH_RS04540	SM00257	Lysin motif
STH_RS04545	SM00854	Bacterial capsule synthesis protein PGA_cap
STH_RS04560	SM00382	ATPases associated with a variety of cellular activities
STH_RS04560	SM00487	DEAD-like helicases superfamily
STH_RS04560	SM00490	helicase superfamily c-terminal domain
STH_RS04570	SM00382	ATPases associated with a variety of cellular activities
STH_RS04620	SM00900	STH_RS04620
STH_RS04705	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS04720	SM00387	Histidine kinase-like ATPases
STH_RS04725	SM00421	helix_turn_helix, Lux Regulon
STH_RS04725	SM00448	cheY-homologous receiver domain
STH_RS04735	SM00421	helix_turn_helix, Lux Regulon
STH_RS04735	SM00448	cheY-homologous receiver domain
STH_RS04805	SM00386	HAT (Half-A-TPR) repeats
STH_RS04820	SM00986	Uracil DNA glycosylase superfamily
STH_RS04820	SM00987	UreE urease accessory protein, C-terminal domain 
STH_RS04860	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS04860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS04910	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS04910	SM01091	Transporter associated domain
STH_RS04920	SM00825	Beta-ketoacyl synthase
STH_RS04960	SM00822	STH_RS04960
STH_RS05000	SM00382	ATPases associated with a variety of cellular activities
STH_RS05045	SM00849	Metallo-beta-lactamase superfamily
STH_RS05050	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
STH_RS05050	SM00387	Histidine kinase-like ATPases
STH_RS05055	SM00448	cheY-homologous receiver domain
STH_RS05055	SM00850	LytTr DNA-binding domain
STH_RS05165	SM00360	RNA recognition motif
STH_RS05205	SM00028	Tetratricopeptide repeats
STH_RS05235	SM00421	helix_turn_helix, Lux Regulon
STH_RS05235	SM00448	cheY-homologous receiver domain
STH_RS05315	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
STH_RS05320	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS05320	SM00387	Histidine kinase-like ATPases
STH_RS05320	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS05325	SM00448	cheY-homologous receiver domain
STH_RS05325	SM00862	Transcriptional regulatory protein, C terminal
STH_RS05380	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
STH_RS05410	SM00062	Bacterial periplasmic substrate-binding proteins
STH_RS05410	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
STH_RS05420	SM00382	ATPases associated with a variety of cellular activities
STH_RS05450	SM00644	STH_RS05450
STH_RS05525	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS05525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS05530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS05530	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS05540	SM00382	ATPases associated with a variety of cellular activities
STH_RS05600	SM00967	RNA 2'-O ribose methyltransferase substrate binding
STH_RS05640	SM00873	B3/4 domain
STH_RS05640	SM00874	tRNA synthetase B5 domain
STH_RS05640	SM00896	Ferredoxin-fold anticodon binding domain
STH_RS05660	SM00382	ATPases associated with a variety of cellular activities
STH_RS05665	SM00382	ATPases associated with a variety of cellular activities
STH_RS05710	SM00382	ATPases associated with a variety of cellular activities
STH_RS05720	SM00463	Small MutS-related domain
STH_RS05720	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
STH_RS05720	SM00534	ATPase domain of DNA mismatch repair MUTS family
STH_RS05725	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS05755	SM00363	S4 RNA-binding domain
STH_RS05840	SM00382	ATPases associated with a variety of cellular activities
STH_RS05865	SM00232	JAB/MPN domain
STH_RS05870	SM00232	JAB/MPN domain
STH_RS05895	SM00382	ATPases associated with a variety of cellular activities
STH_RS05915	SM00278	Helix-hairpin-helix DNA-binding motif class 1
STH_RS05920	SM00382	ATPases associated with a variety of cellular activities
STH_RS05955	SM01323	STH_RS05955
STH_RS05975	SM00763	PrkA AAA domain
STH_RS06005	SM00421	helix_turn_helix, Lux Regulon
STH_RS06075	SM00878	Biotin carboxylase C-terminal domain
STH_RS06100	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
STH_RS06105	SM00382	ATPases associated with a variety of cellular activities
STH_RS06135	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
STH_RS06140	SM00851	MGS-like domain
STH_RS06140	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
STH_RS06150	SM00740	STH_RS06150
STH_RS06215	SM00842	Cell division protein FtsA
STH_RS06220	SM00864	Tubulin/FtsZ family, GTPase domain
STH_RS06220	SM00865	Tubulin/FtsZ family, C-terminal domain
STH_RS06300	SM00382	ATPases associated with a variety of cellular activities
STH_RS06340	SM00363	S4 RNA-binding domain
STH_RS06345	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
STH_RS06375	SM01323	STH_RS06375
STH_RS06435	SM00834	Putative regulatory protein
STH_RS06485	SM00360	RNA recognition motif
STH_RS06505	SM00382	ATPases associated with a variety of cellular activities
STH_RS06540	SM00382	ATPases associated with a variety of cellular activities
STH_RS06545	SM00382	ATPases associated with a variety of cellular activities
STH_RS06600	SM00382	ATPases associated with a variety of cellular activities
STH_RS06630	SM00490	helicase superfamily c-terminal domain
STH_RS06695	SM00919	Malic enzyme, NAD binding domain
STH_RS06695	SM01274	STH_RS06695
STH_RS06765	SM00831	Cation transporter/ATPase, N-terminus
STH_RS06785	SM00072	Guanylate kinase homologues.
STH_RS06790	SM01409	STH_RS06790
STH_RS06800	SM00487	DEAD-like helicases superfamily
STH_RS06800	SM00490	helicase superfamily c-terminal domain
STH_RS06845	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS06850	SM00331	Sigma factor PP2C-like phosphatases
STH_RS06850	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
STH_RS06855	SM00220	Serine/Threonine protein kinases, catalytic domain
STH_RS06855	SM00740	STH_RS06855
STH_RS06870	SM00260	Two component signalling adaptor domain
STH_RS06890	SM01120	STH_RS06890
STH_RS06890	SM01121	STH_RS06890
STH_RS06935	SM00822	STH_RS06935
STH_RS07005	SM00487	DEAD-like helicases superfamily
STH_RS07005	SM00490	helicase superfamily c-terminal domain
STH_RS07015	SM00382	ATPases associated with a variety of cellular activities
STH_RS07190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS07190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS07215	SM00382	ATPases associated with a variety of cellular activities
STH_RS07220	SM00382	ATPases associated with a variety of cellular activities
STH_RS07285	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
STH_RS07325	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
STH_RS07330	SM00822	STH_RS07330
STH_RS07340	SM00358	Double-stranded RNA binding motif
STH_RS07340	SM00535	Ribonuclease III family
STH_RS07350	SM00968	SMC proteins Flexible Hinge Domain
STH_RS07355	SM00382	ATPases associated with a variety of cellular activities
STH_RS07355	SM00962	SRP54-type protein, GTPase domain
STH_RS07355	SM00963	SRP54-type protein, helical bundle domain
STH_RS07360	SM00422	helix_turn_helix, mercury resistance
STH_RS07395	SM00382	ATPases associated with a variety of cellular activities
STH_RS07395	SM00962	SRP54-type protein, GTPase domain
STH_RS07395	SM00963	SRP54-type protein, helical bundle domain
STH_RS07450	SM00382	ATPases associated with a variety of cellular activities
STH_RS07475	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
STH_RS07475	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
STH_RS07475	SM00493	STH_RS07475
STH_RS07580	SM00946	Prolyl-tRNA synthetase, C-terminal
STH_RS07600	SM00382	ATPases associated with a variety of cellular activities
STH_RS07625	SM00479	STH_RS07625
STH_RS07625	SM00481	DNA polymerase alpha chain like domain
STH_RS07660	SM00316	Ribosomal protein S1-like RNA-binding domain
STH_RS07695	SM00904	Riboflavin kinase
STH_RS07700	SM00363	S4 RNA-binding domain
STH_RS07705	SM01387	STH_RS07705
STH_RS07720	SM00316	Ribosomal protein S1-like RNA-binding domain
STH_RS07720	SM00322	K homology RNA-binding domain
STH_RS07740	SM00260	Two component signalling adaptor domain
STH_RS07750	SM00073	Histidine Phosphotransfer domain
STH_RS07750	SM00260	Two component signalling adaptor domain
STH_RS07750	SM00387	Histidine kinase-like ATPases
STH_RS07750	SM01231	STH_RS07750
STH_RS07765	SM00448	cheY-homologous receiver domain
STH_RS07770	SM00448	cheY-homologous receiver domain
STH_RS07775	SM00138	Methyltransferase, chemotaxis proteins 
STH_RS07800	SM00859	Semialdehyde dehydrogenase, NAD binding domain
STH_RS07810	SM01130	STH_RS07810
STH_RS07845	SM00849	Metallo-beta-lactamase superfamily
STH_RS07900	SM00257	Lysin motif
STH_RS07900	SM00631	STH_RS07900
STH_RS07990	SM00530	Helix-turn-helix XRE-family like proteins 
STH_RS07995	SM00936	Penicillin-binding protein 5, C-terminal domain 
STH_RS08025	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
STH_RS08030	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS08030	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
STH_RS08070	SM00342	helix_turn_helix, arabinose operon control protein
STH_RS08085	SM00382	ATPases associated with a variety of cellular activities
STH_RS08095	SM00382	ATPases associated with a variety of cellular activities
STH_RS08130	SM00852	Probable molybdopterin binding domain
STH_RS08155	SM00382	ATPases associated with a variety of cellular activities
STH_RS08160	SM00382	ATPases associated with a variety of cellular activities
STH_RS08165	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS08185	SM00487	DEAD-like helicases superfamily
STH_RS08185	SM00490	helicase superfamily c-terminal domain
STH_RS08200	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS08215	SM00382	ATPases associated with a variety of cellular activities
STH_RS08230	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS08255	SM00382	ATPases associated with a variety of cellular activities
STH_RS08280	SM00852	Probable molybdopterin binding domain
STH_RS08285	SM00419	helix_turn_helix, cAMP Regulatory protein
STH_RS08290	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
STH_RS08295	SM00851	MGS-like domain
STH_RS08300	SM00487	DEAD-like helicases superfamily
STH_RS08300	SM00490	helicase superfamily c-terminal domain
STH_RS08315	SM00382	ATPases associated with a variety of cellular activities
STH_RS08385	SM00382	ATPases associated with a variety of cellular activities
STH_RS08405	SM00563	Phosphate acyltransferases
STH_RS08410	SM00316	Ribosomal protein S1-like RNA-binding domain
STH_RS08420	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
STH_RS08420	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
STH_RS08420	SM00493	STH_RS08420
STH_RS08430	SM01240	STH_RS08430
STH_RS08455	SM00382	ATPases associated with a variety of cellular activities
STH_RS08460	SM01207	STH_RS08460
STH_RS08530	SM00562	STH_RS08530
STH_RS08535	SM00257	Lysin motif
STH_RS08545	SM00996	S-adenosyl-L-homocysteine hydrolase
STH_RS08545	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
STH_RS08555	SM00052	Putative diguanylate phosphodiesterase
STH_RS08555	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
STH_RS08555	SM00091	PAS domain
STH_RS08555	SM00267	diguanylate cyclase
STH_RS08580	SM00382	ATPases associated with a variety of cellular activities
STH_RS08625	SM00479	STH_RS08625
STH_RS08625	SM00488	STH_RS08625
STH_RS08625	SM00491	STH_RS08625
STH_RS08655	SM00028	Tetratricopeptide repeats
STH_RS08665	SM00842	Cell division protein FtsA
STH_RS08695	SM00478	endonuclease III
STH_RS08695	SM00525	STH_RS08695
STH_RS08735	SM00257	Lysin motif
STH_RS08775	SM00382	ATPases associated with a variety of cellular activities
STH_RS08785	SM00382	ATPases associated with a variety of cellular activities
STH_RS08800	SM00853	MutL C terminal dimerisation domain
STH_RS08800	SM01340	STH_RS08800
STH_RS08840	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
STH_RS08840	SM00534	ATPase domain of DNA mismatch repair MUTS family
STH_RS08850	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS08880	SM00360	RNA recognition motif
STH_RS08905	SM00382	ATPases associated with a variety of cellular activities
STH_RS08920	SM00481	DNA polymerase alpha chain like domain
STH_RS08950	SM00322	K homology RNA-binding domain
STH_RS08950	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS08965	SM00382	ATPases associated with a variety of cellular activities
STH_RS08970	SM00363	S4 RNA-binding domain
STH_RS09005	SM00636	STH_RS09005
STH_RS09045	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
STH_RS09080	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS09090	SM01001	AIR carboxylase
STH_RS09125	SM00387	Histidine kinase-like ATPases
STH_RS09135	SM00936	Penicillin-binding protein 5, C-terminal domain 
STH_RS09140	SM00382	ATPases associated with a variety of cellular activities
STH_RS09170	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
STH_RS09170	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
STH_RS09195	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
STH_RS09210	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
STH_RS09215	SM00091	PAS domain
STH_RS09215	SM00382	ATPases associated with a variety of cellular activities
STH_RS09220	SM00448	cheY-homologous receiver domain
STH_RS09225	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
STH_RS09255	SM00363	S4 RNA-binding domain
STH_RS09260	SM00861	Transketolase, pyrimidine binding domain
STH_RS09360	SM00382	ATPases associated with a variety of cellular activities
STH_RS09370	SM00841	Elongation factor P, C-terminal
STH_RS09370	SM01185	STH_RS09370
STH_RS09415	SM00829	Enoylreductase
STH_RS09450	SM00382	ATPases associated with a variety of cellular activities
STH_RS09475	SM00481	DNA polymerase alpha chain like domain
STH_RS09495	SM00903	Flavin reductase like domain
STH_RS09500	SM00363	S4 RNA-binding domain
STH_RS09505	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS09585	SM00487	DEAD-like helicases superfamily
STH_RS09620	SM00342	helix_turn_helix, arabinose operon control protein
STH_RS09665	SM00855	Phosphoglycerate mutase family
STH_RS09710	SM00382	ATPases associated with a variety of cellular activities
STH_RS09775	SM01329	STH_RS09775
STH_RS09845	SM00382	ATPases associated with a variety of cellular activities
STH_RS09885	SM00382	ATPases associated with a variety of cellular activities
STH_RS09895	SM00382	ATPases associated with a variety of cellular activities
STH_RS09895	SM00843	STH_RS09895
STH_RS09910	SM00244	prohibitin homologues
STH_RS09915	SM00244	prohibitin homologues
STH_RS09925	SM00986	Uracil DNA glycosylase superfamily
STH_RS09925	SM00987	UreE urease accessory protein, C-terminal domain 
STH_RS09940	SM00257	Lysin motif
STH_RS09940	SM00636	STH_RS09940
STH_RS09970	SM00917	LeuA allosteric (dimerisation) domain
STH_RS10015	SM00732	Likely ribonuclease with RNase H fold.
STH_RS10025	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS10045	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
STH_RS10070	SM00909	Sporulation and spore germination
STH_RS10075	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS10075	SM00387	Histidine kinase-like ATPases
STH_RS10075	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS10080	SM00448	cheY-homologous receiver domain
STH_RS10080	SM00862	Transcriptional regulatory protein, C terminal
STH_RS10100	SM00529	Helix-turn-helix diphteria tox regulatory element
STH_RS10120	SM00382	ATPases associated with a variety of cellular activities
STH_RS10125	SM00382	ATPases associated with a variety of cellular activities
STH_RS10130	SM00347	helix_turn_helix multiple antibiotic resistance protein
STH_RS10170	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
STH_RS10300	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
STH_RS10325	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS10350	SM00877	STH_RS10350
STH_RS10400	SM00342	helix_turn_helix, arabinose operon control protein
STH_RS10400	SM00871	Bacterial transcription activator, effector binding domain
STH_RS10410	SM00382	ATPases associated with a variety of cellular activities
STH_RS10435	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS10470	SM00382	ATPases associated with a variety of cellular activities
STH_RS10470	SM00448	cheY-homologous receiver domain
STH_RS10475	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS10475	SM00387	Histidine kinase-like ATPases
STH_RS10475	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS10575	SM00382	ATPases associated with a variety of cellular activities
STH_RS10640	SM00861	Transketolase, pyrimidine binding domain
STH_RS10700	SM00257	Lysin motif
STH_RS10730	SM00899	STH_RS10730
STH_RS10740	SM00421	helix_turn_helix, Lux Regulon
STH_RS10740	SM00448	cheY-homologous receiver domain
STH_RS10760	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS10765	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS10780	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS10795	SM00567	E-Z type HEAT repeats
STH_RS10800	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS10825	SM00382	ATPases associated with a variety of cellular activities
STH_RS10830	SM00382	ATPases associated with a variety of cellular activities
STH_RS10840	SM00861	Transketolase, pyrimidine binding domain
STH_RS10855	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
STH_RS10930	SM00878	Biotin carboxylase C-terminal domain
STH_RS10935	SM00422	helix_turn_helix, mercury resistance
STH_RS10950	SM00382	ATPases associated with a variety of cellular activities
STH_RS10980	SM00382	ATPases associated with a variety of cellular activities
STH_RS10985	SM00382	ATPases associated with a variety of cellular activities
STH_RS11000	SM00060	Fibronectin type 3 domain
STH_RS11065	SM00382	ATPases associated with a variety of cellular activities
STH_RS11300	SM00382	ATPases associated with a variety of cellular activities
STH_RS11325	SM00479	STH_RS11325
STH_RS11395	SM00382	ATPases associated with a variety of cellular activities
STH_RS11425	SM00487	DEAD-like helicases superfamily
STH_RS11425	SM00490	helicase superfamily c-terminal domain
STH_RS11450	SM00420	helix_turn_helix, Deoxyribose operon repressor
STH_RS11450	SM01134	STH_RS11450
STH_RS11475	SM00822	STH_RS11475
STH_RS11510	SM00861	Transketolase, pyrimidine binding domain
STH_RS11550	SM00327	von Willebrand factor (vWF) type A domain
STH_RS11590	SM00849	Metallo-beta-lactamase superfamily
STH_RS11625	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS11670	SM00382	ATPases associated with a variety of cellular activities
STH_RS11680	SM00354	helix_turn _helix lactose operon repressor
STH_RS11685	SM01329	STH_RS11685
STH_RS11705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
STH_RS11705	SM00866	STH_RS11705
STH_RS11725	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS11735	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
STH_RS11735	SM00421	helix_turn_helix, Lux Regulon
STH_RS11760	SM00382	ATPases associated with a variety of cellular activities
STH_RS11765	SM00382	ATPases associated with a variety of cellular activities
STH_RS11820	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS11925	SM00740	STH_RS11925
STH_RS11950	SM00073	Histidine Phosphotransfer domain
STH_RS11955	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
STH_RS11955	SM00091	PAS domain
STH_RS11955	SM00387	Histidine kinase-like ATPases
STH_RS11955	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS11955	SM00448	cheY-homologous receiver domain
STH_RS11960	SM00448	cheY-homologous receiver domain
STH_RS11970	SM00382	ATPases associated with a variety of cellular activities
STH_RS11975	SM00981	STH_RS11975
STH_RS12070	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS12080	SM00347	helix_turn_helix multiple antibiotic resistance protein
STH_RS12085	SM00849	Metallo-beta-lactamase superfamily
STH_RS12110	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS12130	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS12130	SM00954	Region found in RelA / SpoT proteins
STH_RS12150	SM00382	ATPases associated with a variety of cellular activities
STH_RS12180	SM00331	Sigma factor PP2C-like phosphatases
STH_RS12255	SM00382	ATPases associated with a variety of cellular activities
STH_RS12310	SM00849	Metallo-beta-lactamase superfamily
STH_RS12435	SM01018	B12 binding domain
STH_RS12460	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS12460	SM00387	Histidine kinase-like ATPases
STH_RS12460	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS12465	SM00448	cheY-homologous receiver domain
STH_RS12465	SM00862	Transcriptional regulatory protein, C terminal
STH_RS12520	SM00382	ATPases associated with a variety of cellular activities
STH_RS12525	SM00062	Bacterial periplasmic substrate-binding proteins
STH_RS12595	SM00881	CoA binding domain
STH_RS12605	SM00919	Malic enzyme, NAD binding domain
STH_RS12605	SM01274	STH_RS12605
STH_RS12625	SM00346	helix_turn_helix isocitrate lyase regulation
STH_RS12640	SM00382	ATPases associated with a variety of cellular activities
STH_RS12655	SM01329	STH_RS12655
STH_RS12710	SM00460	Transglutaminase/protease-like homologues
STH_RS12725	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
STH_RS12755	SM00756	STH_RS12755
STH_RS12875	SM00936	Penicillin-binding protein 5, C-terminal domain 
STH_RS12905	SM00644	STH_RS12905
STH_RS12930	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
STH_RS12950	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS12985	SM00382	ATPases associated with a variety of cellular activities
STH_RS12990	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS13005	SM00831	Cation transporter/ATPase, N-terminus
STH_RS13025	SM01006	Siderophore biosynthesis protein domain
STH_RS13040	SM00382	ATPases associated with a variety of cellular activities
STH_RS13050	SM00062	Bacterial periplasmic substrate-binding proteins
STH_RS13050	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
STH_RS13080	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS13080	SM00382	ATPases associated with a variety of cellular activities
STH_RS13085	SM00345	helix_turn_helix gluconate operon transcriptional repressor
STH_RS13095	SM00382	ATPases associated with a variety of cellular activities
STH_RS13100	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
STH_RS13100	SM00091	PAS domain
STH_RS13100	SM00387	Histidine kinase-like ATPases
STH_RS13105	SM00421	helix_turn_helix, Lux Regulon
STH_RS13105	SM00448	cheY-homologous receiver domain
STH_RS13230	SM00854	Bacterial capsule synthesis protein PGA_cap
STH_RS13240	SM00382	ATPases associated with a variety of cellular activities
STH_RS13250	SM00478	endonuclease III
STH_RS13250	SM00525	STH_RS13250
STH_RS13270	SM00487	DEAD-like helicases superfamily
STH_RS13270	SM00490	helicase superfamily c-terminal domain
STH_RS13315	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
STH_RS13315	SM00475	5'-3' exonuclease
STH_RS13320	SM00881	CoA binding domain
STH_RS13355	SM00917	LeuA allosteric (dimerisation) domain
STH_RS13370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
STH_RS13375	SM00448	cheY-homologous receiver domain
STH_RS13385	SM00347	helix_turn_helix multiple antibiotic resistance protein
STH_RS13410	SM00382	ATPases associated with a variety of cellular activities
STH_RS13425	SM00382	ATPases associated with a variety of cellular activities
STH_RS13465	SM00382	ATPases associated with a variety of cellular activities
STH_RS13480	SM00382	ATPases associated with a variety of cellular activities
STH_RS13485	SM00382	ATPases associated with a variety of cellular activities
STH_RS13505	SM00421	helix_turn_helix, Lux Regulon
STH_RS13505	SM00448	cheY-homologous receiver domain
STH_RS13510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS13510	SM00387	Histidine kinase-like ATPases
STH_RS13565	SM00491	STH_RS13565
STH_RS13700	SM00382	ATPases associated with a variety of cellular activities
STH_RS13710	SM00345	helix_turn_helix gluconate operon transcriptional repressor
STH_RS13765	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
STH_RS13860	SM00478	endonuclease III
STH_RS13860	SM00525	STH_RS13860
STH_RS13945	SM00244	prohibitin homologues
STH_RS13950	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
STH_RS13985	SM00382	ATPases associated with a variety of cellular activities
STH_RS14025	SM00845	GatB domain
STH_RS14040	SM00382	ATPases associated with a variety of cellular activities
STH_RS14045	SM00382	ATPases associated with a variety of cellular activities
STH_RS14050	SM00278	Helix-hairpin-helix DNA-binding motif class 1
STH_RS14050	SM00292	breast cancer carboxy-terminal domain
STH_RS14050	SM00532	Ligase N family
STH_RS14085	SM01359	STH_RS14085
STH_RS14085	SM01360	STH_RS14085
STH_RS14135	SM00360	RNA recognition motif
STH_RS14175	SM00052	Putative diguanylate phosphodiesterase
STH_RS14175	SM00091	PAS domain
STH_RS14175	SM00267	diguanylate cyclase
STH_RS14180	SM01209	STH_RS14180
STH_RS14180	SM01210	STH_RS14180
STH_RS14185	SM00798	AICARFT/IMPCHase bienzyme
STH_RS14185	SM00851	MGS-like domain
STH_RS14215	SM01211	STH_RS14215
STH_RS14230	SM00998	Adenylosuccinate lyase C-terminus
STH_RS14245	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS14320	SM00244	prohibitin homologues
STH_RS14350	SM00382	ATPases associated with a variety of cellular activities
STH_RS14355	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
STH_RS14370	SM00267	diguanylate cyclase
STH_RS14385	SM00859	Semialdehyde dehydrogenase, NAD binding domain
STH_RS14415	SM00883	Chaperonin 10 Kd subunit
STH_RS14420	SM00278	Helix-hairpin-helix DNA-binding motif class 1
STH_RS14420	SM00481	DNA polymerase alpha chain like domain
STH_RS14420	SM00483	DNA polymerase X family
STH_RS14445	SM00729	Elongator protein 3, MiaB family, Radical SAM
STH_RS14450	SM00852	Probable molybdopterin binding domain
STH_RS14455	SM00852	Probable molybdopterin binding domain
STH_RS14505	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS14505	SM01240	STH_RS14505
STH_RS14510	SM00986	Uracil DNA glycosylase superfamily
STH_RS14510	SM00987	UreE urease accessory protein, C-terminal domain 
STH_RS14520	SM00014	Acid phosphatase homologues
STH_RS14565	SM00316	Ribosomal protein S1-like RNA-binding domain
STH_RS14565	SM00732	Likely ribonuclease with RNase H fold.
STH_RS14605	SM01005	Alanine racemase, C-terminal domain
STH_RS14660	SM00100	Cyclic nucleotide-monophosphate binding domain
STH_RS14660	SM00419	helix_turn_helix, cAMP Regulatory protein
STH_RS14675	SM00867	YceI-like domain 
STH_RS14730	SM00530	Helix-turn-helix XRE-family like proteins 
STH_RS14745	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS14745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS14845	SM00382	ATPases associated with a variety of cellular activities
STH_RS14845	SM00962	SRP54-type protein, GTPase domain
STH_RS14915	SM00382	ATPases associated with a variety of cellular activities
STH_RS14980	SM00893	Electron transfer flavoprotein domain
STH_RS14985	SM00893	Electron transfer flavoprotein domain
STH_RS15025	SM00382	ATPases associated with a variety of cellular activities
STH_RS15040	SM00093	SERine  Proteinase INhibitors
STH_RS15045	SM00093	SERine  Proteinase INhibitors
STH_RS15085	SM01329	STH_RS15085
STH_RS15105	SM00646	STH_RS15105
STH_RS15130	SM00382	ATPases associated with a variety of cellular activities
STH_RS15135	SM00382	ATPases associated with a variety of cellular activities
STH_RS15145	SM00662	RNA polymerases D
STH_RS15150	SM00363	S4 RNA-binding domain
STH_RS15150	SM01390	STH_RS15150
STH_RS15170	SM00316	Ribosomal protein S1-like RNA-binding domain
STH_RS15230	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
STH_RS15235	SM01374	STH_RS15235
STH_RS15255	SM00322	K homology RNA-binding domain
STH_RS15270	SM01382	STH_RS15270
STH_RS15270	SM01383	STH_RS15270
STH_RS15290	SM01403	STH_RS15290
STH_RS15300	SM00838	Elongation factor G C-terminus
STH_RS15300	SM00889	Elongation factor G, domain IV
STH_RS15325	SM00663	RNA polymerase I subunit A N-terminus
STH_RS15350	SM00649	Ribosomal protein L11/L12
STH_RS15355	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
STH_RS15355	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
STH_RS15385	SM00421	helix_turn_helix, Lux Regulon
STH_RS15385	SM00448	cheY-homologous receiver domain
STH_RS15390	SM00387	Histidine kinase-like ATPases
STH_RS15400	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS15425	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
STH_RS15440	SM00989	STH_RS15440
STH_RS15475	SM01208	STH_RS15475
STH_RS15480	SM00967	RNA 2'-O ribose methyltransferase substrate binding
STH_RS15495	SM00535	Ribonuclease III family
STH_RS15500	SM00840	STH_RS15500
STH_RS15525	SM00670	Large family of predicted nucleotide-binding domains
STH_RS15530	SM01058	CarD-like/TRCF domain
STH_RS15550	SM00382	ATPases associated with a variety of cellular activities
STH_RS15555	SM00830	Chorismate mutase type II
STH_RS15575	SM00382	ATPases associated with a variety of cellular activities
STH_RS15575	SM01086	C-terminal, D2-small domain, of ClpB protein
STH_RS15595	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
STH_RS15610	SM00838	Elongation factor G C-terminus
STH_RS15610	SM00889	Elongation factor G, domain IV
STH_RS15705	SM00849	Metallo-beta-lactamase superfamily
STH_RS15715	SM00421	helix_turn_helix, Lux Regulon
STH_RS15715	SM00448	cheY-homologous receiver domain
STH_RS15745	SM00890	Domain of unknown function
STH_RS15765	SM00360	RNA recognition motif
STH_RS15845	SM00905	Dihydroneopterin aldolase
STH_RS15870	SM01221	STH_RS15870
STH_RS15870	SM01222	STH_RS15870
STH_RS15900	SM00382	ATPases associated with a variety of cellular activities
STH_RS15905	SM00977	TilS substrate C-terminal domain
STH_RS15910	SM00331	Sigma factor PP2C-like phosphatases
STH_RS15920	SM00852	Probable molybdopterin binding domain
STH_RS15945	SM00116	Domain in cystathionine beta-synthase and other proteins.
STH_RS15955	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
STH_RS15960	SM00902	Iron hydrogenase small subunit
STH_RS15960	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
STH_RS15975	SM00382	ATPases associated with a variety of cellular activities
STH_RS15980	SM00387	Histidine kinase-like ATPases
STH_RS15980	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS15985	SM00448	cheY-homologous receiver domain
STH_RS15985	SM00862	Transcriptional regulatory protein, C terminal
STH_RS16000	SM00382	ATPases associated with a variety of cellular activities
STH_RS16015	SM00421	helix_turn_helix, Lux Regulon
STH_RS16015	SM00448	cheY-homologous receiver domain
STH_RS16020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS16020	SM00387	Histidine kinase-like ATPases
STH_RS16060	SM00363	S4 RNA-binding domain
STH_RS16065	SM00411	bacterial (prokaryotic) histone like domain
STH_RS16085	SM00966	SpoVT / AbrB like domain 
STH_RS16090	SM00487	DEAD-like helicases superfamily
STH_RS16090	SM00490	helicase superfamily c-terminal domain
STH_RS16090	SM00982	STH_RS16090
STH_RS16090	SM01058	CarD-like/TRCF domain
STH_RS16110	SM01400	STH_RS16110
STH_RS16160	SM00650	Ribosomal RNA adenine dimethylases
STH_RS16165	SM01208	STH_RS16165
STH_RS16210	SM00966	SpoVT / AbrB like domain 
STH_RS16225	SM00382	ATPases associated with a variety of cellular activities
STH_RS16320	SM00382	ATPases associated with a variety of cellular activities
STH_RS16325	SM00382	ATPases associated with a variety of cellular activities
STH_RS16350	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
STH_RS16380	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS16380	SM00387	Histidine kinase-like ATPases
STH_RS16380	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS16385	SM00448	cheY-homologous receiver domain
STH_RS16385	SM00862	Transcriptional regulatory protein, C terminal
STH_RS16400	SM00902	Iron hydrogenase small subunit
STH_RS16415	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
STH_RS16430	SM00382	ATPases associated with a variety of cellular activities
STH_RS16430	SM00448	cheY-homologous receiver domain
STH_RS16435	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
STH_RS16435	SM00091	PAS domain
STH_RS16435	SM00387	Histidine kinase-like ATPases
STH_RS16435	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS16470	SM00091	PAS domain
STH_RS16470	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS16470	SM00387	Histidine kinase-like ATPases
STH_RS16470	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS16475	SM00448	cheY-homologous receiver domain
STH_RS16475	SM00862	Transcriptional regulatory protein, C terminal
STH_RS16485	SM00914	STH_RS16485
STH_RS16515	SM00788	Adenylosuccinate synthetase
STH_RS16520	SM00382	ATPases associated with a variety of cellular activities
STH_RS16525	SM00382	ATPases associated with a variety of cellular activities
STH_RS16565	SM00028	Tetratricopeptide repeats
STH_RS16595	SM00470	ParB-like nuclease domain
STH_RS16610	SM01228	STH_RS16610
STH_RS16620	SM00393	Putative single-stranded nucleic acids-binding domain
STH_RS16620	SM01245	STH_RS16620
STH_RS16630	SM01234	STH_RS16630
STH_RS16645	SM00091	PAS domain
STH_RS16645	SM00387	Histidine kinase-like ATPases
STH_RS16650	SM00448	cheY-homologous receiver domain
STH_RS16655	SM00421	helix_turn_helix, Lux Regulon
STH_RS16760	SM00749	bacterial OsmY and nodulation domain
STH_RS16770	SM01118	STH_RS16770
STH_RS16775	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
STH_RS16775	SM00387	Histidine kinase-like ATPases
STH_RS16780	SM00854	Bacterial capsule synthesis protein PGA_cap
STH_RS16790	SM00850	LytTr DNA-binding domain
STH_RS16805	SM00267	diguanylate cyclase
STH_RS16835	SM00849	Metallo-beta-lactamase superfamily
STH_RS16845	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS16845	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS16855	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
STH_RS16855	SM00387	Histidine kinase-like ATPases
STH_RS16880	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS16880	SM00387	Histidine kinase-like ATPases
STH_RS16880	SM00388	His Kinase A (phosphoacceptor) domain
STH_RS16885	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS16885	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
STH_RS16890	SM00382	ATPases associated with a variety of cellular activities
STH_RS16890	SM00850	LytTr DNA-binding domain
STH_RS16900	SM00052	Putative diguanylate phosphodiesterase
STH_RS16900	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
STH_RS16900	SM00091	PAS domain
STH_RS16900	SM00267	diguanylate cyclase
STH_RS16950	SM00287	Bacterial SH3 domain homologues
STH_RS16955	SM00382	ATPases associated with a variety of cellular activities
STH_RS16960	SM00387	Histidine kinase-like ATPases
STH_RS16965	SM00287	Bacterial SH3 domain homologues
STH_RS16965	SM00646	STH_RS16965
STH_RS16980	SM00448	cheY-homologous receiver domain
STH_RS17020	SM00421	helix_turn_helix, Lux Regulon
STH_RS17025	SM00347	helix_turn_helix multiple antibiotic resistance protein
STH_RS17035	SM00347	helix_turn_helix multiple antibiotic resistance protein
STH_RS17040	SM00060	Fibronectin type 3 domain
STH_RS17045	SM00046	Diacylglycerol kinase catalytic domain (presumed)
STH_RS17065	SM00478	endonuclease III
STH_RS17125	SM00382	ATPases associated with a variety of cellular activities
STH_RS17125	SM00843	STH_RS17125
STH_RS17170	SM00954	Region found in RelA / SpoT proteins
STH_RS17230	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS17280	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS17285	SM00448	cheY-homologous receiver domain
STH_RS17285	SM01012	STH_RS17285
STH_RS17325	SM00855	Phosphoglycerate mutase family
STH_RS17330	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
STH_RS17330	SM00267	diguanylate cyclase
STH_RS17335	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
STH_RS17335	SM00387	Histidine kinase-like ATPases
STH_RS17405	SM00318	Staphylococcal nuclease homologues
STH_RS17425	SM00327	von Willebrand factor (vWF) type A domain
STH_RS17455	SM00530	Helix-turn-helix XRE-family like proteins 
STH_RS17470	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
STH_RS17500	SM00345	helix_turn_helix gluconate operon transcriptional repressor
STH_RS17515	SM00047	Lysozyme subfamily 2
STH_RS17525	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
STH_RS17535	SM00530	Helix-turn-helix XRE-family like proteins 
STH_RS17590	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
STH_RS17590	SM00091	PAS domain
STH_RS17590	SM00267	diguanylate cyclase
STH_RS17620	SM00257	Lysin motif
STH_RS17620	SM00564	beta-propeller repeat
STH_RS17630	SM00873	B3/4 domain
STH_RS17640	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
STH_RS17645	SM00257	Lysin motif
STH_RS17645	SM01208	STH_RS17645
