D082_RS00005	SM00382	ATPases associated with a variety of cellular activities
D082_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
D082_RS00045	SM01007	Class II Aldolase and Adducin N-terminal domain
D082_RS00060	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS00060	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS00060	SM00091	PAS domain
D082_RS00060	SM00387	Histidine kinase-like ATPases
D082_RS00065	SM00342	helix_turn_helix, arabinose operon control protein
D082_RS00065	SM00448	cheY-homologous receiver domain
D082_RS00070	SM00448	cheY-homologous receiver domain
D082_RS00085	SM00116	Domain in cystathionine beta-synthase and other proteins.
D082_RS00085	SM00924	MgtE intracellular N domain
D082_RS00190	SM00421	helix_turn_helix, Lux Regulon
D082_RS00190	SM00448	cheY-homologous receiver domain
D082_RS00195	SM00646	D082_RS00195
D082_RS00265	SM00642	Alpha-amylase domain
D082_RS00270	SM00382	ATPases associated with a variety of cellular activities
D082_RS00390	SM00835	Cupin
D082_RS00510	SM00393	Putative single-stranded nucleic acids-binding domain
D082_RS00515	SM00028	Tetratricopeptide repeats
D082_RS00515	SM00271	DnaJ molecular chaperone homology domain
D082_RS00525	SM00382	ATPases associated with a variety of cellular activities
D082_RS00540	SM00400	zinc finger
D082_RS00540	SM00493	D082_RS00540
D082_RS00545	SM00316	Ribosomal protein S1-like RNA-binding domain
D082_RS00555	SM00382	ATPases associated with a variety of cellular activities
D082_RS00560	SM00331	Sigma factor PP2C-like phosphatases
D082_RS00560	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS00560	SM00448	cheY-homologous receiver domain
D082_RS00565	SM00448	cheY-homologous receiver domain
D082_RS00570	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS00570	SM00387	Histidine kinase-like ATPases
D082_RS00570	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS00610	SM00422	helix_turn_helix, mercury resistance
D082_RS00645	SM01329	D082_RS00645
D082_RS00665	SM00382	ATPases associated with a variety of cellular activities
D082_RS00665	SM00962	SRP54-type protein, GTPase domain
D082_RS00665	SM00963	SRP54-type protein, helical bundle domain
D082_RS00680	SM00382	ATPases associated with a variety of cellular activities
D082_RS00785	SM00387	Histidine kinase-like ATPases
D082_RS00785	SM00433	TopoisomeraseII
D082_RS00820	SM01207	D082_RS00820
D082_RS00940	SM00028	Tetratricopeptide repeats
D082_RS00945	SM00382	ATPases associated with a variety of cellular activities
D082_RS00980	SM00421	helix_turn_helix, Lux Regulon
D082_RS01005	SM00226	Low molecular weight phosphatase family
D082_RS01010	SM00448	cheY-homologous receiver domain
D082_RS01010	SM00862	Transcriptional regulatory protein, C terminal
D082_RS01020	SM00382	ATPases associated with a variety of cellular activities
D082_RS01050	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
D082_RS01125	SM00382	ATPases associated with a variety of cellular activities
D082_RS01140	SM00052	Putative diguanylate phosphodiesterase
D082_RS01140	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS01155	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS01155	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS01180	SM00448	cheY-homologous receiver domain
D082_RS01180	SM00862	Transcriptional regulatory protein, C terminal
D082_RS01195	SM00563	Phosphate acyltransferases
D082_RS01200	SM00930	D082_RS01200
D082_RS01205	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
D082_RS01205	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
D082_RS01205	SM00493	D082_RS01205
D082_RS01215	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
D082_RS01235	SM00345	helix_turn_helix gluconate operon transcriptional repressor
D082_RS01250	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
D082_RS01300	SM00637	D082_RS01300
D082_RS01320	SM00822	D082_RS01320
D082_RS01330	SM00464	Found in ATP-dependent protease La (LON)
D082_RS01355	SM00363	S4 RNA-binding domain
D082_RS01365	SM00450	Rhodanese Homology Domain
D082_RS01425	SM00387	Histidine kinase-like ATPases
D082_RS01425	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS01465	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
D082_RS01515	SM00382	ATPases associated with a variety of cellular activities
D082_RS01525	SM00240	Forkhead associated domain
D082_RS01560	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS01620	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
D082_RS01650	SM00226	Low molecular weight phosphatase family
D082_RS01725	SM00567	E-Z type HEAT repeats
D082_RS01730	SM00849	Metallo-beta-lactamase superfamily
D082_RS01745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS01745	SM00387	Histidine kinase-like ATPases
D082_RS01745	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS01790	SM00382	ATPases associated with a variety of cellular activities
D082_RS01790	SM01086	C-terminal, D2-small domain, of ClpB protein
D082_RS01795	SM00984	UDP binding domain
D082_RS01860	SM00363	S4 RNA-binding domain
D082_RS01975	SM00833	Cobalamin synthesis protein cobW C-terminal domain
D082_RS01985	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS02005	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS02235	SM00046	Diacylglycerol kinase catalytic domain (presumed)
D082_RS02235	SM00851	MGS-like domain
D082_RS02250	SM00382	ATPases associated with a variety of cellular activities
D082_RS02275	SM01228	D082_RS02275
D082_RS02280	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS02280	SM00091	PAS domain
D082_RS02280	SM00387	Histidine kinase-like ATPases
D082_RS02280	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS02320	SM00419	helix_turn_helix, cAMP Regulatory protein
D082_RS02350	SM01400	D082_RS02350
D082_RS02370	SM01211	D082_RS02370
D082_RS02435	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS02435	SM00876	Biotin and Thiamin Synthesis associated domain
D082_RS02515	SM00903	Flavin reductase like domain
D082_RS02525	SM00382	ATPases associated with a variety of cellular activities
D082_RS02525	SM01086	C-terminal, D2-small domain, of ClpB protein
D082_RS02550	SM00925	MltA specific insert domain
D082_RS02575	SM00474	3'-5' exonuclease
D082_RS02585	SM01005	Alanine racemase, C-terminal domain
D082_RS02595	SM00998	Adenylosuccinate lyase C-terminus
D082_RS02625	SM00382	ATPases associated with a variety of cellular activities
D082_RS02675	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS02720	SM00331	Sigma factor PP2C-like phosphatases
D082_RS02720	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
D082_RS02725	SM00327	von Willebrand factor (vWF) type A domain
D082_RS02755	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
D082_RS02765	SM00448	cheY-homologous receiver domain
D082_RS02765	SM00862	Transcriptional regulatory protein, C terminal
D082_RS02770	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
D082_RS02825	SM00938	Nitrogen regulatory protein P-II
D082_RS02845	SM00255	Toll - interleukin 1 - resistance
D082_RS02860	SM00849	Metallo-beta-lactamase superfamily
D082_RS02865	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
D082_RS02865	SM01080	D082_RS02865
D082_RS02890	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS02890	SM00267	diguanylate cyclase
D082_RS02890	SM00448	cheY-homologous receiver domain
D082_RS02925	SM00028	Tetratricopeptide repeats
D082_RS02940	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS02940	SM00387	Histidine kinase-like ATPases
D082_RS02940	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS02940	SM00448	cheY-homologous receiver domain
D082_RS02960	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS02960	SM00387	Histidine kinase-like ATPases
D082_RS02960	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS02970	SM00670	Large family of predicted nucleotide-binding domains
D082_RS02990	SM00382	ATPases associated with a variety of cellular activities
D082_RS02995	SM00448	cheY-homologous receiver domain
D082_RS03000	SM01248	D082_RS03000
D082_RS03055	SM00028	Tetratricopeptide repeats
D082_RS03070	SM00382	ATPases associated with a variety of cellular activities
D082_RS03110	SM00967	RNA 2'-O ribose methyltransferase substrate binding
D082_RS03120	SM00028	Tetratricopeptide repeats
D082_RS03135	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS03180	SM00360	RNA recognition motif
D082_RS03185	SM00450	Rhodanese Homology Domain
D082_RS03205	SM00852	Probable molybdopterin binding domain
D082_RS03225	SM00851	MGS-like domain
D082_RS03225	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
D082_RS03260	SM00260	Two component signalling adaptor domain
D082_RS03265	SM00073	Histidine Phosphotransfer domain
D082_RS03265	SM00260	Two component signalling adaptor domain
D082_RS03265	SM00387	Histidine kinase-like ATPases
D082_RS03265	SM00448	cheY-homologous receiver domain
D082_RS03265	SM01231	D082_RS03265
D082_RS03270	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
D082_RS03275	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS03275	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
D082_RS03275	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS03280	SM00260	Two component signalling adaptor domain
D082_RS03285	SM00448	cheY-homologous receiver domain
D082_RS03290	SM00448	cheY-homologous receiver domain
D082_RS03295	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS03320	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS03335	SM00849	Metallo-beta-lactamase superfamily
D082_RS03340	SM00530	Helix-turn-helix XRE-family like proteins 
D082_RS03355	SM00947	Carbonic anhydrase
D082_RS03365	SM00567	E-Z type HEAT repeats
D082_RS03410	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS03495	SM00072	Guanylate kinase homologues.
D082_RS03500	SM00855	Phosphoglycerate mutase family
D082_RS03525	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
D082_RS03525	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
D082_RS03545	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS03545	SM00091	PAS domain
D082_RS03545	SM00387	Histidine kinase-like ATPases
D082_RS03545	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS03560	SM00487	DEAD-like helicases superfamily
D082_RS03565	SM00292	breast cancer carboxy-terminal domain
D082_RS03590	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS03620	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS03640	SM00567	E-Z type HEAT repeats
D082_RS03645	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
D082_RS03670	SM00838	Elongation factor G C-terminus
D082_RS03670	SM00889	Elongation factor G, domain IV
D082_RS03685	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS03710	SM00382	ATPases associated with a variety of cellular activities
D082_RS03715	SM00448	cheY-homologous receiver domain
D082_RS03720	SM00448	cheY-homologous receiver domain
D082_RS03725	SM00382	ATPases associated with a variety of cellular activities
D082_RS03735	SM00849	Metallo-beta-lactamase superfamily
D082_RS03780	SM00831	Cation transporter/ATPase, N-terminus
D082_RS03795	SM00981	D082_RS03795
D082_RS03815	SM00957	SecA DEAD-like domain
D082_RS03815	SM00958	SecA preprotein cross-linking domain
D082_RS03825	SM00917	LeuA allosteric (dimerisation) domain
D082_RS03860	SM00853	MutL C terminal dimerisation domain
D082_RS03860	SM01340	D082_RS03860
D082_RS03885	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS03920	SM00028	Tetratricopeptide repeats
D082_RS03940	SM00382	ATPases associated with a variety of cellular activities
D082_RS03945	SM00382	ATPases associated with a variety of cellular activities
D082_RS03995	SM00487	DEAD-like helicases superfamily
D082_RS03995	SM00490	helicase superfamily c-terminal domain
D082_RS03995	SM00982	D082_RS03995
D082_RS03995	SM01058	CarD-like/TRCF domain
D082_RS04015	SM00382	ATPases associated with a variety of cellular activities
D082_RS04030	SM00382	ATPases associated with a variety of cellular activities
D082_RS04035	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
D082_RS04065	SM00342	helix_turn_helix, arabinose operon control protein
D082_RS04080	SM00382	ATPases associated with a variety of cellular activities
D082_RS04090	SM00448	cheY-homologous receiver domain
D082_RS04095	SM00917	LeuA allosteric (dimerisation) domain
D082_RS04105	SM00382	ATPases associated with a variety of cellular activities
D082_RS04190	SM00382	ATPases associated with a variety of cellular activities
D082_RS04210	SM00487	DEAD-like helicases superfamily
D082_RS04210	SM00490	helicase superfamily c-terminal domain
D082_RS04235	SM00382	ATPases associated with a variety of cellular activities
D082_RS04250	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS04250	SM00387	Histidine kinase-like ATPases
D082_RS04250	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS04255	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS04255	SM00091	PAS domain
D082_RS04305	SM00955	D082_RS04305
D082_RS04310	SM00448	cheY-homologous receiver domain
D082_RS04315	SM00448	cheY-homologous receiver domain
D082_RS04320	SM00260	Two component signalling adaptor domain
D082_RS04325	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
D082_RS04325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS04330	SM00073	Histidine Phosphotransfer domain
D082_RS04330	SM00260	Two component signalling adaptor domain
D082_RS04330	SM00387	Histidine kinase-like ATPases
D082_RS04330	SM00448	cheY-homologous receiver domain
D082_RS04330	SM01231	D082_RS04330
D082_RS04350	SM01118	D082_RS04350
D082_RS04405	SM00052	Putative diguanylate phosphodiesterase
D082_RS04405	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS04405	SM00267	diguanylate cyclase
D082_RS04430	SM00073	Histidine Phosphotransfer domain
D082_RS04495	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
D082_RS04595	SM01321	D082_RS04595
D082_RS04625	SM00421	helix_turn_helix, Lux Regulon
D082_RS04640	SM00320	WD40 repeats
D082_RS04645	SM00833	Cobalamin synthesis protein cobW C-terminal domain
D082_RS04655	SM00382	ATPases associated with a variety of cellular activities
D082_RS04720	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
D082_RS04720	SM00481	DNA polymerase alpha chain like domain
D082_RS04730	SM00358	Double-stranded RNA binding motif
D082_RS04730	SM00535	Ribonuclease III family
D082_RS04745	SM00387	Histidine kinase-like ATPases
D082_RS04745	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS04815	SM00052	Putative diguanylate phosphodiesterase
D082_RS04815	SM00448	cheY-homologous receiver domain
D082_RS04840	SM00320	WD40 repeats
D082_RS04885	SM00877	D082_RS04885
D082_RS04895	SM00947	Carbonic anhydrase
D082_RS04910	SM00382	ATPases associated with a variety of cellular activities
D082_RS04945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS04945	SM00331	Sigma factor PP2C-like phosphatases
D082_RS04955	SM00642	Alpha-amylase domain
D082_RS05020	SM00320	WD40 repeats
D082_RS05025	SM00320	WD40 repeats
D082_RS05055	SM00829	Enoylreductase
D082_RS05100	SM00387	Histidine kinase-like ATPases
D082_RS05115	SM00287	Bacterial SH3 domain homologues
D082_RS05190	SM00382	ATPases associated with a variety of cellular activities
D082_RS05195	SM00028	Tetratricopeptide repeats
D082_RS05250	SM00387	Histidine kinase-like ATPases
D082_RS05250	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS05250	SM00448	cheY-homologous receiver domain
D082_RS05265	SM00849	Metallo-beta-lactamase superfamily
D082_RS05305	SM00880	D082_RS05305
D082_RS05310	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS05405	SM00479	D082_RS05405
D082_RS05440	SM00052	Putative diguanylate phosphodiesterase
D082_RS05440	SM00240	Forkhead associated domain
D082_RS05440	SM00267	diguanylate cyclase
D082_RS05585	SM00563	Phosphate acyltransferases
D082_RS05655	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS05655	SM00419	helix_turn_helix, cAMP Regulatory protein
D082_RS05750	SM00316	Ribosomal protein S1-like RNA-binding domain
D082_RS05750	SM00357	Cold shock protein domain
D082_RS05750	SM00955	D082_RS05750
D082_RS05760	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS05760	SM00331	Sigma factor PP2C-like phosphatases
D082_RS05915	SM00382	ATPases associated with a variety of cellular activities
D082_RS05915	SM01086	C-terminal, D2-small domain, of ClpB protein
D082_RS05955	SM00530	Helix-turn-helix XRE-family like proteins 
D082_RS06065	SM01321	D082_RS06065
D082_RS06125	SM00191	Integrin alpha (beta-propellor repeats).
D082_RS06125	SM00237	Domains in Na-Ca exchangers and integrin-beta4
D082_RS06125	SM00560	LamG-like jellyroll fold domain
D082_RS06135	SM00320	WD40 repeats
D082_RS06145	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS06145	SM00419	helix_turn_helix, cAMP Regulatory protein
D082_RS06170	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS06195	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS06215	SM01329	D082_RS06215
D082_RS06280	SM00883	Chaperonin 10 Kd subunit
D082_RS06295	SM00642	Alpha-amylase domain
D082_RS06335	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS06335	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS06335	SM00091	PAS domain
D082_RS06335	SM00267	diguanylate cyclase
D082_RS06345	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
D082_RS06345	SM00474	3'-5' exonuclease
D082_RS06345	SM00475	5'-3' exonuclease
D082_RS06345	SM00482	DNA polymerase A domain
D082_RS06385	SM00562	D082_RS06385
D082_RS06405	SM00448	cheY-homologous receiver domain
D082_RS06410	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS06410	SM00091	PAS domain
D082_RS06410	SM00387	Histidine kinase-like ATPases
D082_RS06410	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS06435	SM00822	D082_RS06435
D082_RS06455	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
D082_RS06455	SM00240	Forkhead associated domain
D082_RS06495	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS06495	SM00091	PAS domain
D082_RS06495	SM00387	Histidine kinase-like ATPases
D082_RS06495	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS06605	SM00028	Tetratricopeptide repeats
D082_RS06690	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS06765	SM00732	Likely ribonuclease with RNase H fold.
D082_RS06785	SM00155	Phospholipase D. Active site motifs.
D082_RS06785	SM00278	Helix-hairpin-helix DNA-binding motif class 1
D082_RS06795	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS06795	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
D082_RS06825	SM00382	ATPases associated with a variety of cellular activities
D082_RS06835	SM00434	DNA Topoisomerase IV
D082_RS06855	SM00855	Phosphoglycerate mutase family
D082_RS06930	SM00448	cheY-homologous receiver domain
D082_RS07000	SM00507	HNH nucleases
D082_RS07015	SM00382	ATPases associated with a variety of cellular activities
D082_RS07030	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS07030	SM00267	diguanylate cyclase
D082_RS07040	SM00327	von Willebrand factor (vWF) type A domain
D082_RS07090	SM01192	D082_RS07090
D082_RS07090	SM01193	D082_RS07090
D082_RS07095	SM00028	Tetratricopeptide repeats
D082_RS07105	SM00836	DALR anticodon binding domain
D082_RS07105	SM01016	Arginyl tRNA synthetase N terminal dom
D082_RS07155	SM00382	ATPases associated with a variety of cellular activities
D082_RS07200	SM00487	DEAD-like helicases superfamily
D082_RS07200	SM00490	helicase superfamily c-terminal domain
D082_RS07200	SM01142	D082_RS07200
D082_RS07260	SM00989	D082_RS07260
D082_RS07275	SM00989	D082_RS07275
D082_RS07295	SM00028	Tetratricopeptide repeats
D082_RS07300	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS07315	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS07335	SM01093	D082_RS07335
D082_RS07360	SM00642	Alpha-amylase domain
D082_RS07485	SM00028	Tetratricopeptide repeats
D082_RS07500	SM00937	D082_RS07500
D082_RS07525	SM00028	Tetratricopeptide repeats
D082_RS07530	SM00849	Metallo-beta-lactamase superfamily
D082_RS07530	SM00903	Flavin reductase like domain
D082_RS07580	SM00421	helix_turn_helix, Lux Regulon
D082_RS07590	SM00448	cheY-homologous receiver domain
D082_RS07630	SM00890	Domain of unknown function
D082_RS07650	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS07650	SM00245	tail specific protease
D082_RS07700	SM00642	Alpha-amylase domain
D082_RS07710	SM00387	Histidine kinase-like ATPases
D082_RS07710	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS07710	SM00448	cheY-homologous receiver domain
D082_RS07715	SM00267	diguanylate cyclase
D082_RS07715	SM00448	cheY-homologous receiver domain
D082_RS07765	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS07770	SM00028	Tetratricopeptide repeats
D082_RS07805	SM00421	helix_turn_helix, Lux Regulon
D082_RS07820	SM00382	ATPases associated with a variety of cellular activities
D082_RS07845	SM00278	Helix-hairpin-helix DNA-binding motif class 1
D082_RS07845	SM00292	breast cancer carboxy-terminal domain
D082_RS07845	SM00532	Ligase N family
D082_RS07850	SM00382	ATPases associated with a variety of cellular activities
D082_RS07875	SM00937	D082_RS07875
D082_RS07885	SM00116	Domain in cystathionine beta-synthase and other proteins.
D082_RS07985	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
D082_RS07990	SM00448	cheY-homologous receiver domain
D082_RS08000	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS08040	SM00460	Transglutaminase/protease-like homologues
D082_RS08070	SM00649	Ribosomal protein L11/L12
D082_RS08075	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
D082_RS08075	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
D082_RS08130	SM00267	diguanylate cyclase
D082_RS08195	SM00448	cheY-homologous receiver domain
D082_RS08200	SM00448	cheY-homologous receiver domain
D082_RS08205	SM00260	Two component signalling adaptor domain
D082_RS08210	SM00028	Tetratricopeptide repeats
D082_RS08210	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
D082_RS08210	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS08225	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS08225	SM00267	diguanylate cyclase
D082_RS08235	SM00271	DnaJ molecular chaperone homology domain
D082_RS08330	SM00421	helix_turn_helix, Lux Regulon
D082_RS08330	SM00448	cheY-homologous receiver domain
D082_RS08335	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS08335	SM00387	Histidine kinase-like ATPases
D082_RS08335	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS08365	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS08370	SM00873	B3/4 domain
D082_RS08370	SM00874	tRNA synthetase B5 domain
D082_RS08370	SM00896	Ferredoxin-fold anticodon binding domain
D082_RS08375	SM01034	Sensors of blue-light using FAD
D082_RS08380	SM00448	cheY-homologous receiver domain
D082_RS08385	SM00052	Putative diguanylate phosphodiesterase
D082_RS08400	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
D082_RS08400	SM01232	D082_RS08400
D082_RS08410	SM00387	Histidine kinase-like ATPases
D082_RS08410	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS08410	SM00448	cheY-homologous receiver domain
D082_RS08420	SM00881	CoA binding domain
D082_RS08430	SM00567	E-Z type HEAT repeats
D082_RS08440	SM00240	Forkhead associated domain
D082_RS08450	SM00822	D082_RS08450
D082_RS08475	SM01094	CpcD/allophycocyanin linker domain
D082_RS08480	SM01094	CpcD/allophycocyanin linker domain
D082_RS08485	SM01094	CpcD/allophycocyanin linker domain
D082_RS08515	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS08545	SM00363	S4 RNA-binding domain
D082_RS08550	SM00116	Domain in cystathionine beta-synthase and other proteins.
D082_RS08615	SM00387	Histidine kinase-like ATPases
D082_RS08615	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS08620	SM00382	ATPases associated with a variety of cellular activities
D082_RS08630	SM00046	Diacylglycerol kinase catalytic domain (presumed)
D082_RS08640	SM00382	ATPases associated with a variety of cellular activities
D082_RS08705	SM00480	DNA polymerase III beta subunit
D082_RS08755	SM01133	D082_RS08755
D082_RS08920	SM00756	D082_RS08920
D082_RS08925	SM00849	Metallo-beta-lactamase superfamily
D082_RS08925	SM00903	Flavin reductase like domain
D082_RS08930	SM00481	DNA polymerase alpha chain like domain
D082_RS08960	SM00316	Ribosomal protein S1-like RNA-binding domain
D082_RS08970	SM00382	ATPases associated with a variety of cellular activities
D082_RS09050	SM00448	cheY-homologous receiver domain
D082_RS09050	SM00862	Transcriptional regulatory protein, C terminal
D082_RS09115	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS09130	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS09160	SM00052	Putative diguanylate phosphodiesterase
D082_RS09160	SM00240	Forkhead associated domain
D082_RS09160	SM00267	diguanylate cyclase
D082_RS09165	SM00052	Putative diguanylate phosphodiesterase
D082_RS09165	SM00240	Forkhead associated domain
D082_RS09165	SM00267	diguanylate cyclase
D082_RS09170	SM00052	Putative diguanylate phosphodiesterase
D082_RS09170	SM00091	PAS domain
D082_RS09170	SM00240	Forkhead associated domain
D082_RS09170	SM00267	diguanylate cyclase
D082_RS09190	SM00567	E-Z type HEAT repeats
D082_RS09225	SM01116	D082_RS09225
D082_RS09230	SM00852	Probable molybdopterin binding domain
D082_RS09235	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS09315	SM00052	Putative diguanylate phosphodiesterase
D082_RS09315	SM00448	cheY-homologous receiver domain
D082_RS09320	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS09320	SM00091	PAS domain
D082_RS09320	SM00387	Histidine kinase-like ATPases
D082_RS09320	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS09320	SM00448	cheY-homologous receiver domain
D082_RS09330	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
D082_RS09340	SM00316	Ribosomal protein S1-like RNA-binding domain
D082_RS09350	SM00244	prohibitin homologues
D082_RS09360	SM00460	Transglutaminase/protease-like homologues
D082_RS09375	SM00382	ATPases associated with a variety of cellular activities
D082_RS09390	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS09410	SM01001	AIR carboxylase
D082_RS09445	SM00271	DnaJ molecular chaperone homology domain
D082_RS09450	SM00028	Tetratricopeptide repeats
D082_RS09510	SM00448	cheY-homologous receiver domain
D082_RS09510	SM00862	Transcriptional regulatory protein, C terminal
D082_RS09525	SM00411	bacterial (prokaryotic) histone like domain
D082_RS09540	SM00487	DEAD-like helicases superfamily
D082_RS09540	SM00490	helicase superfamily c-terminal domain
D082_RS09565	SM01387	D082_RS09565
D082_RS09650	SM00382	ATPases associated with a variety of cellular activities
D082_RS09750	SM00710	Parallel beta-helix repeats
D082_RS09860	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS09895	SM00271	DnaJ molecular chaperone homology domain
D082_RS09940	SM00278	Helix-hairpin-helix DNA-binding motif class 1
D082_RS09955	SM00360	RNA recognition motif
D082_RS09965	SM00257	Lysin motif
D082_RS10020	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS10020	SM00091	PAS domain
D082_RS10020	SM00267	diguanylate cyclase
D082_RS10020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS10035	SM00732	Likely ribonuclease with RNase H fold.
D082_RS10040	SM00028	Tetratricopeptide repeats
D082_RS10085	SM01230	D082_RS10085
D082_RS10100	SM00912	haemagglutination activity domain
D082_RS10120	SM00382	ATPases associated with a variety of cellular activities
D082_RS10130	SM00267	diguanylate cyclase
D082_RS10135	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS10195	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS10245	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS10245	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
D082_RS10265	SM00631	D082_RS10265
D082_RS10280	SM00448	cheY-homologous receiver domain
D082_RS10280	SM00862	Transcriptional regulatory protein, C terminal
D082_RS10300	SM00387	Histidine kinase-like ATPases
D082_RS10300	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS10335	SM01094	CpcD/allophycocyanin linker domain
D082_RS10345	SM00028	Tetratricopeptide repeats
D082_RS10350	SM00487	DEAD-like helicases superfamily
D082_RS10350	SM00490	helicase superfamily c-terminal domain
D082_RS10365	SM00052	Putative diguanylate phosphodiesterase
D082_RS10365	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS10365	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS10365	SM00091	PAS domain
D082_RS10365	SM00267	diguanylate cyclase
D082_RS10365	SM01079	D082_RS10365
D082_RS10390	SM00382	ATPases associated with a variety of cellular activities
D082_RS10425	SM00959	Rho termination factor, N-terminal domain
D082_RS10440	SM00646	D082_RS10440
D082_RS10500	SM00382	ATPases associated with a variety of cellular activities
D082_RS10505	SM00382	ATPases associated with a variety of cellular activities
D082_RS10585	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
D082_RS10615	SM00244	prohibitin homologues
D082_RS10630	SM00849	Metallo-beta-lactamase superfamily
D082_RS10645	SM00710	Parallel beta-helix repeats
D082_RS10685	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS10690	SM00950	D082_RS10690
D082_RS10710	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
D082_RS10745	SM00861	Transketolase, pyrimidine binding domain
D082_RS10765	SM00382	ATPases associated with a variety of cellular activities
D082_RS10780	SM00342	helix_turn_helix, arabinose operon control protein
D082_RS10825	SM00327	von Willebrand factor (vWF) type A domain
D082_RS10825	SM00382	ATPases associated with a variety of cellular activities
D082_RS10830	SM00878	Biotin carboxylase C-terminal domain
D082_RS10870	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
D082_RS10870	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
D082_RS10895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS10900	SM00421	helix_turn_helix, Lux Regulon
D082_RS10900	SM00448	cheY-homologous receiver domain
D082_RS10940	SM00968	SMC proteins Flexible Hinge Domain
D082_RS10955	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
D082_RS10960	SM00028	Tetratricopeptide repeats
D082_RS10990	SM00240	Forkhead associated domain
D082_RS11020	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
D082_RS11020	SM00534	ATPase domain of DNA mismatch repair MUTS family
D082_RS11065	SM00382	ATPases associated with a variety of cellular activities
D082_RS11100	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS11120	SM00933	D082_RS11120
D082_RS11135	SM00877	D082_RS11135
D082_RS11140	SM00028	Tetratricopeptide repeats
D082_RS11145	SM00116	Domain in cystathionine beta-synthase and other proteins.
D082_RS11170	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS11195	SM00271	DnaJ molecular chaperone homology domain
D082_RS11215	SM00320	WD40 repeats
D082_RS11275	SM00861	Transketolase, pyrimidine binding domain
D082_RS11280	SM00825	Beta-ketoacyl synthase
D082_RS11310	SM00788	Adenylosuccinate synthetase
D082_RS11340	SM00662	RNA polymerases D
D082_RS11355	SM00316	Ribosomal protein S1-like RNA-binding domain
D082_RS11400	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
D082_RS11405	SM01374	D082_RS11405
D082_RS11425	SM00322	K homology RNA-binding domain
D082_RS11440	SM01382	D082_RS11440
D082_RS11440	SM01383	D082_RS11440
D082_RS11540	SM00859	Semialdehyde dehydrogenase, NAD binding domain
D082_RS11545	SM00487	DEAD-like helicases superfamily
D082_RS11545	SM00490	helicase superfamily c-terminal domain
D082_RS11550	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS11555	SM00448	cheY-homologous receiver domain
D082_RS11555	SM00862	Transcriptional regulatory protein, C terminal
D082_RS11570	SM00382	ATPases associated with a variety of cellular activities
D082_RS11590	SM00091	PAS domain
D082_RS11590	SM00387	Histidine kinase-like ATPases
D082_RS11590	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS11595	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
D082_RS11630	SM00487	DEAD-like helicases superfamily
D082_RS11630	SM00490	helicase superfamily c-terminal domain
D082_RS11670	SM00322	K homology RNA-binding domain
D082_RS11710	SM00091	PAS domain
D082_RS11710	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS11710	SM00387	Histidine kinase-like ATPases
D082_RS11710	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS11720	SM00962	SRP54-type protein, GTPase domain
D082_RS11755	SM00448	cheY-homologous receiver domain
D082_RS11760	SM00434	DNA Topoisomerase IV
D082_RS11825	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS11825	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS11825	SM00091	PAS domain
D082_RS11825	SM00387	Histidine kinase-like ATPases
D082_RS11825	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS11840	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
D082_RS11850	SM01004	Delta-aminolevulinic acid dehydratase
D082_RS11855	SM00460	Transglutaminase/protease-like homologues
D082_RS11865	SM00387	Histidine kinase-like ATPases
D082_RS11865	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS11865	SM00448	cheY-homologous receiver domain
D082_RS11870	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS11870	SM00387	Histidine kinase-like ATPases
D082_RS11870	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS11870	SM00448	cheY-homologous receiver domain
D082_RS11875	SM00382	ATPases associated with a variety of cellular activities
D082_RS11890	SM00825	Beta-ketoacyl synthase
D082_RS11910	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
D082_RS11920	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
D082_RS11945	SM00278	Helix-hairpin-helix DNA-binding motif class 1
D082_RS11945	SM00465	GIY-YIG type nucleases (URI domain)
D082_RS11960	SM00287	Bacterial SH3 domain homologues
D082_RS11960	SM00646	D082_RS11960
D082_RS11965	SM00232	JAB/MPN domain
D082_RS12020	SM01403	D082_RS12020
D082_RS12030	SM00838	Elongation factor G C-terminus
D082_RS12030	SM00889	Elongation factor G, domain IV
D082_RS12050	SM01209	D082_RS12050
D082_RS12050	SM01210	D082_RS12050
D082_RS12080	SM00360	RNA recognition motif
D082_RS12110	SM00450	Rhodanese Homology Domain
D082_RS12170	SM00382	ATPases associated with a variety of cellular activities
D082_RS12250	SM00905	Dihydroneopterin aldolase
D082_RS12270	SM01350	D082_RS12270
D082_RS12305	SM01004	Delta-aminolevulinic acid dehydratase
D082_RS12325	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
D082_RS12350	SM00052	Putative diguanylate phosphodiesterase
D082_RS12355	SM00448	cheY-homologous receiver domain
D082_RS12390	SM00382	ATPases associated with a variety of cellular activities
D082_RS12395	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS12415	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS12415	SM00091	PAS domain
D082_RS12415	SM00267	diguanylate cyclase
D082_RS12440	SM00382	ATPases associated with a variety of cellular activities
D082_RS12520	SM00849	Metallo-beta-lactamase superfamily
D082_RS12525	SM01130	D082_RS12525
D082_RS12530	SM00859	Semialdehyde dehydrogenase, NAD binding domain
D082_RS12550	SM00382	ATPases associated with a variety of cellular activities
D082_RS12550	SM00994	ClpX C4-type zinc finger
D082_RS12550	SM01086	C-terminal, D2-small domain, of ClpB protein
D082_RS12585	SM00271	DnaJ molecular chaperone homology domain
D082_RS12635	SM00220	Serine/Threonine protein kinases, catalytic domain
D082_RS12655	SM00798	AICARFT/IMPCHase bienzyme
D082_RS12655	SM00851	MGS-like domain
D082_RS12665	SM00387	Histidine kinase-like ATPases
D082_RS12665	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS12680	SM00563	Phosphate acyltransferases
D082_RS12700	SM00248	ankyrin repeats
D082_RS12715	SM00877	D082_RS12715
D082_RS12720	SM00877	D082_RS12720
D082_RS12730	SM00961	Ribulose bisphosphate carboxylase, small chain
D082_RS12740	SM00331	Sigma factor PP2C-like phosphatases
D082_RS12740	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
D082_RS12760	SM00382	ATPases associated with a variety of cellular activities
D082_RS12760	SM00393	Putative single-stranded nucleic acids-binding domain
D082_RS12800	SM00704	CDGSH-type zinc finger. Function unknown.
D082_RS12815	SM00463	Small MutS-related domain
D082_RS12815	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
D082_RS12815	SM00534	ATPase domain of DNA mismatch repair MUTS family
D082_RS12820	SM00331	Sigma factor PP2C-like phosphatases
D082_RS12820	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
D082_RS12885	SM00567	E-Z type HEAT repeats
D082_RS12910	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS12920	SM00904	Riboflavin kinase
D082_RS12925	SM00382	ATPases associated with a variety of cellular activities
D082_RS12975	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
D082_RS12995	SM00382	ATPases associated with a variety of cellular activities
D082_RS13010	SM00240	Forkhead associated domain
D082_RS13055	SM00244	prohibitin homologues
D082_RS13065	SM00845	GatB domain
D082_RS13090	SM00493	D082_RS13090
D082_RS13155	SM00267	diguanylate cyclase
D082_RS13155	SM00448	cheY-homologous receiver domain
D082_RS13160	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS13160	SM00073	Histidine Phosphotransfer domain
D082_RS13160	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS13160	SM00091	PAS domain
D082_RS13160	SM00387	Histidine kinase-like ATPases
D082_RS13160	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS13160	SM00448	cheY-homologous receiver domain
D082_RS13160	SM01079	D082_RS13160
D082_RS13240	SM00387	Histidine kinase-like ATPases
D082_RS13250	SM00382	ATPases associated with a variety of cellular activities
D082_RS13270	SM00382	ATPases associated with a variety of cellular activities
D082_RS13320	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
D082_RS13405	SM00841	Elongation factor P, C-terminal
D082_RS13405	SM01185	D082_RS13405
D082_RS13435	SM01234	D082_RS13435
D082_RS13445	SM01018	B12 binding domain
D082_RS13460	SM00872	Alpha mannosidase, middle domain
D082_RS13465	SM00260	Two component signalling adaptor domain
D082_RS13465	SM00387	Histidine kinase-like ATPases
D082_RS13465	SM00448	cheY-homologous receiver domain
D082_RS13465	SM01231	D082_RS13465
D082_RS13480	SM00729	Elongator protein 3, MiaB family, Radical SAM
D082_RS13515	SM00257	Lysin motif
D082_RS13535	SM00240	Forkhead associated domain
D082_RS13555	SM00235	Zinc-dependent metalloprotease
D082_RS13615	SM00382	ATPases associated with a variety of cellular activities
D082_RS13625	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
D082_RS13650	SM00382	ATPases associated with a variety of cellular activities
D082_RS13650	SM00962	SRP54-type protein, GTPase domain
D082_RS13650	SM00963	SRP54-type protein, helical bundle domain
D082_RS13670	SM00831	Cation transporter/ATPase, N-terminus
D082_RS13720	SM00073	Histidine Phosphotransfer domain
D082_RS13720	SM00387	Histidine kinase-like ATPases
D082_RS13720	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS13720	SM00448	cheY-homologous receiver domain
D082_RS13730	SM00363	S4 RNA-binding domain
D082_RS13730	SM01390	D082_RS13730
D082_RS13735	SM00382	ATPases associated with a variety of cellular activities
D082_RS13760	SM01091	Transporter associated domain
D082_RS13775	SM01230	D082_RS13775
D082_RS13780	SM00530	Helix-turn-helix XRE-family like proteins 
D082_RS13830	SM01247	D082_RS13830
D082_RS13835	SM01248	D082_RS13835
D082_RS13855	SM00358	Double-stranded RNA binding motif
D082_RS13855	SM00535	Ribonuclease III family
D082_RS13885	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS13900	SM00909	Sporulation and spore germination
D082_RS13905	SM00387	Histidine kinase-like ATPases
D082_RS13905	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS13905	SM01248	D082_RS13905
D082_RS13950	SM00670	Large family of predicted nucleotide-binding domains
D082_RS13985	SM00382	ATPases associated with a variety of cellular activities
D082_RS14020	SM00877	D082_RS14020
D082_RS14025	SM00877	D082_RS14025
D082_RS14030	SM00861	Transketolase, pyrimidine binding domain
D082_RS14035	SM00448	cheY-homologous receiver domain
D082_RS14035	SM00862	Transcriptional regulatory protein, C terminal
D082_RS14055	SM00382	ATPases associated with a variety of cellular activities
D082_RS14090	SM00028	Tetratricopeptide repeats
D082_RS14105	SM00382	ATPases associated with a variety of cellular activities
D082_RS14150	SM00419	helix_turn_helix, cAMP Regulatory protein
D082_RS14160	SM00450	Rhodanese Homology Domain
D082_RS14165	SM00014	Acid phosphatase homologues
D082_RS14195	SM00062	Bacterial periplasmic substrate-binding proteins
D082_RS14205	SM00244	prohibitin homologues
D082_RS14220	SM00930	D082_RS14220
D082_RS14235	SM00382	ATPases associated with a variety of cellular activities
D082_RS14255	SM00487	DEAD-like helicases superfamily
D082_RS14255	SM00490	helicase superfamily c-terminal domain
D082_RS14265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
D082_RS14265	SM00331	Sigma factor PP2C-like phosphatases
D082_RS14375	SM00838	Elongation factor G C-terminus
D082_RS14395	SM00052	Putative diguanylate phosphodiesterase
D082_RS14395	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS14395	SM00091	PAS domain
D082_RS14395	SM00267	diguanylate cyclase
D082_RS14395	SM00448	cheY-homologous receiver domain
D082_RS14405	SM00382	ATPases associated with a variety of cellular activities
D082_RS14410	SM00861	Transketolase, pyrimidine binding domain
D082_RS14415	SM00116	Domain in cystathionine beta-synthase and other proteins.
D082_RS14450	SM00897	FIST N domain
D082_RS14450	SM01204	D082_RS14450
D082_RS14510	SM00382	ATPases associated with a variety of cellular activities
D082_RS14540	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS14545	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS14550	SM00267	diguanylate cyclase
D082_RS14580	SM00530	Helix-turn-helix XRE-family like proteins 
D082_RS14615	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS14615	SM00387	Histidine kinase-like ATPases
D082_RS14615	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS14675	SM01240	D082_RS14675
D082_RS14690	SM00387	Histidine kinase-like ATPases
D082_RS14690	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS14690	SM00448	cheY-homologous receiver domain
D082_RS14705	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
D082_RS14705	SM00954	Region found in RelA / SpoT proteins
D082_RS14710	SM00996	S-adenosyl-L-homocysteine hydrolase
D082_RS14710	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
D082_RS14755	SM00382	ATPases associated with a variety of cellular activities
D082_RS14800	SM00855	Phosphoglycerate mutase family
D082_RS14825	SM00363	S4 RNA-binding domain
D082_RS14850	SM00535	Ribonuclease III family
D082_RS14855	SM00967	RNA 2'-O ribose methyltransferase substrate binding
D082_RS14865	SM00840	D082_RS14865
D082_RS14870	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
D082_RS14880	SM00382	ATPases associated with a variety of cellular activities
D082_RS14885	SM00382	ATPases associated with a variety of cellular activities
D082_RS14905	SM00855	Phosphoglycerate mutase family
D082_RS14915	SM00864	Tubulin/FtsZ family, GTPase domain
D082_RS14915	SM00865	Tubulin/FtsZ family, C-terminal domain
D082_RS14925	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS14925	SM00245	tail specific protease
D082_RS14945	SM00988	UreE urease accessory protein, N-terminal domain
D082_RS14960	SM00450	Rhodanese Homology Domain
D082_RS14985	SM00382	ATPases associated with a variety of cellular activities
D082_RS15020	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS15020	SM00245	tail specific protease
D082_RS15035	SM00961	Ribulose bisphosphate carboxylase, small chain
D082_RS15070	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS15070	SM00419	helix_turn_helix, cAMP Regulatory protein
D082_RS15175	SM00663	RNA polymerase I subunit A N-terminus
D082_RS15180	SM00100	Cyclic nucleotide-monophosphate binding domain
D082_RS15180	SM00382	ATPases associated with a variety of cellular activities
D082_RS15230	SM00028	Tetratricopeptide repeats
D082_RS15320	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS15325	SM00478	endonuclease III
D082_RS15325	SM00525	D082_RS15325
D082_RS15330	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
D082_RS15335	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
D082_RS15335	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS15335	SM00091	PAS domain
D082_RS15335	SM00267	diguanylate cyclase
D082_RS15360	SM01094	CpcD/allophycocyanin linker domain
D082_RS15380	SM00507	HNH nucleases
D082_RS15415	SM00028	Tetratricopeptide repeats
D082_RS15425	SM00382	ATPases associated with a variety of cellular activities
D082_RS15450	SM00448	cheY-homologous receiver domain
D082_RS15450	SM00862	Transcriptional regulatory protein, C terminal
D082_RS15455	SM00387	Histidine kinase-like ATPases
D082_RS15455	SM00388	His Kinase A (phosphoacceptor) domain
D082_RS15495	SM00382	ATPases associated with a variety of cellular activities
D082_RS15525	SM00271	DnaJ molecular chaperone homology domain
D082_RS15585	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
D082_RS15585	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
D082_RS15755	SM00046	Diacylglycerol kinase catalytic domain (presumed)
D082_RS15760	SM00650	Ribosomal RNA adenine dimethylases
D082_RS15775	SM00919	Malic enzyme, NAD binding domain
D082_RS15775	SM01274	D082_RS15775
D082_RS15785	SM00316	Ribosomal protein S1-like RNA-binding domain
D082_RS15785	SM00322	K homology RNA-binding domain
D082_RS15815	SM01001	AIR carboxylase
D082_RS15825	SM00320	WD40 repeats
D082_RS15850	SM00838	Elongation factor G C-terminus
D082_RS15850	SM00889	Elongation factor G, domain IV
D082_RS15895	SM01011	Aminopeptidase P, N-terminal domain
D082_RS16025	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
D082_RS16025	SM00091	PAS domain
D082_RS17170	SM00924	MgtE intracellular N domain
D082_RS17295	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
D082_RS17320	SM00382	ATPases associated with a variety of cellular activities
D082_RS17345	SM00112	Cadherin repeats.
D082_RS17395	SM00912	haemagglutination activity domain
D082_RS17410	SM00112	Cadherin repeats.
D082_RS17410	SM00237	Domains in Na-Ca exchangers and integrin-beta4
D082_RS17410	SM00710	Parallel beta-helix repeats
D082_RS17420	SM00382	ATPases associated with a variety of cellular activities
D082_RS17435	SM00028	Tetratricopeptide repeats
