TF3313_RS00015	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS00015	SM00760	Bacterial dnaA protein helix-turn-helix domain
TF3313_RS00035	SM00563	Phosphate acyltransferases
TF3313_RS00045	SM00825	Beta-ketoacyl synthase
TF3313_RS00080	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS00240	SM01260	TF3313_RS00240
TF3313_RS00345	SM00850	LytTr DNA-binding domain
TF3313_RS00355	SM01260	TF3313_RS00355
TF3313_RS00365	SM00245	tail specific protease
TF3313_RS00400	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS00440	SM00363	S4 RNA-binding domain
TF3313_RS00450	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS00465	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS00470	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS00530	SM00883	Chaperonin 10 Kd subunit
TF3313_RS00565	SM00448	cheY-homologous receiver domain
TF3313_RS00565	SM00850	LytTr DNA-binding domain
TF3313_RS00585	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS00610	SM00316	Ribosomal protein S1-like RNA-binding domain
TF3313_RS00615	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS00615	SM00448	cheY-homologous receiver domain
TF3313_RS00620	SM00387	Histidine kinase-like ATPases
TF3313_RS00670	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS00690	SM01323	TF3313_RS00690
TF3313_RS00700	SM00870	TF3313_RS00700
TF3313_RS00720	SM00965	Secretin and TonB N terminus short domain
TF3313_RS00845	SM00292	breast cancer carboxy-terminal domain
TF3313_RS00845	SM00532	Ligase N family
TF3313_RS00855	SM01130	TF3313_RS00855
TF3313_RS00860	SM01007	Class II Aldolase and Adducin N-terminal domain
TF3313_RS00890	SM00946	Prolyl-tRNA synthetase, C-terminal
TF3313_RS00900	SM00245	tail specific protease
TF3313_RS00915	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TF3313_RS00965	SM00271	DnaJ molecular chaperone homology domain
TF3313_RS00975	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TF3313_RS00980	SM00463	Small MutS-related domain
TF3313_RS00980	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
TF3313_RS00980	SM00534	ATPase domain of DNA mismatch repair MUTS family
TF3313_RS01020	SM00487	DEAD-like helicases superfamily
TF3313_RS01020	SM00490	helicase superfamily c-terminal domain
TF3313_RS01020	SM00982	TF3313_RS01020
TF3313_RS01020	SM01058	CarD-like/TRCF domain
TF3313_RS01030	SM00893	Electron transfer flavoprotein domain
TF3313_RS01040	SM00893	Electron transfer flavoprotein domain
TF3313_RS01065	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TF3313_RS01095	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS01095	SM00448	cheY-homologous receiver domain
TF3313_RS01100	SM00028	Tetratricopeptide repeats
TF3313_RS01100	SM00387	Histidine kinase-like ATPases
TF3313_RS01225	SM00028	Tetratricopeptide repeats
TF3313_RS01225	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS01240	SM01038	Beta galactosidase small chain
TF3313_RS01255	SM00849	Metallo-beta-lactamase superfamily
TF3313_RS01365	SM00901	TF3313_RS01365
TF3313_RS01525	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS01555	SM01321	TF3313_RS01555
TF3313_RS01610	SM00864	Tubulin/FtsZ family, GTPase domain
TF3313_RS01610	SM00865	Tubulin/FtsZ family, C-terminal domain
TF3313_RS01615	SM00842	Cell division protein FtsA
TF3313_RS01655	SM00740	TF3313_RS01655
TF3313_RS01670	SM00563	Phosphate acyltransferases
TF3313_RS01685	SM00861	Transketolase, pyrimidine binding domain
TF3313_RS01760	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TF3313_RS01805	SM01350	TF3313_RS01805
TF3313_RS01845	SM01038	Beta galactosidase small chain
TF3313_RS01850	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS01900	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS01950	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS02020	SM00487	DEAD-like helicases superfamily
TF3313_RS02030	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS02045	SM01359	TF3313_RS02045
TF3313_RS02045	SM01360	TF3313_RS02045
TF3313_RS02130	SM00710	Parallel beta-helix repeats
TF3313_RS02240	SM00861	Transketolase, pyrimidine binding domain
TF3313_RS02290	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS02300	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS02325	SM00487	DEAD-like helicases superfamily
TF3313_RS02325	SM00490	helicase superfamily c-terminal domain
TF3313_RS02335	SM00710	Parallel beta-helix repeats
TF3313_RS02345	SM00984	UDP binding domain
TF3313_RS02440	SM00387	Histidine kinase-like ATPases
TF3313_RS02445	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS02445	SM00448	cheY-homologous receiver domain
TF3313_RS02470	SM00635	Bacterial Ig-like domain 2
TF3313_RS02475	SM00635	Bacterial Ig-like domain 2
TF3313_RS02555	SM00937	TF3313_RS02555
TF3313_RS02570	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS02585	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS02640	SM00487	DEAD-like helicases superfamily
TF3313_RS02640	SM00490	helicase superfamily c-terminal domain
TF3313_RS02715	SM01252	TF3313_RS02715
TF3313_RS02875	SM00480	DNA polymerase III beta subunit
TF3313_RS02900	SM00028	Tetratricopeptide repeats
TF3313_RS02920	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TF3313_RS02920	SM00245	tail specific protease
TF3313_RS02935	SM00072	Guanylate kinase homologues.
TF3313_RS02975	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS03070	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS03075	SM00245	tail specific protease
TF3313_RS03100	SM00849	Metallo-beta-lactamase superfamily
TF3313_RS03125	SM01149	TF3313_RS03125
TF3313_RS03185	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS03225	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS03235	SM01217	TF3313_RS03235
TF3313_RS03265	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
TF3313_RS03265	SM00534	ATPase domain of DNA mismatch repair MUTS family
TF3313_RS03310	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS03330	SM00567	E-Z type HEAT repeats
TF3313_RS03340	SM00965	Secretin and TonB N terminus short domain
TF3313_RS03360	SM00710	Parallel beta-helix repeats
TF3313_RS03420	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS03430	SM00434	DNA Topoisomerase IV
TF3313_RS03440	SM00245	tail specific protease
TF3313_RS03450	SM00470	ParB-like nuclease domain
TF3313_RS03460	SM00257	Lysin motif
TF3313_RS03465	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TF3313_RS03465	SM00954	Region found in RelA / SpoT proteins
TF3313_RS03480	SM00422	helix_turn_helix, mercury resistance
TF3313_RS03490	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TF3313_RS03535	SM01221	TF3313_RS03535
TF3313_RS03535	SM01222	TF3313_RS03535
TF3313_RS03575	SM00316	Ribosomal protein S1-like RNA-binding domain
TF3313_RS03585	SM00014	Acid phosphatase homologues
TF3313_RS03605	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS03625	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS03630	SM00028	Tetratricopeptide repeats
TF3313_RS03660	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TF3313_RS03700	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS03725	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS03735	SM00642	Alpha-amylase domain
TF3313_RS03745	SM00917	LeuA allosteric (dimerisation) domain
TF3313_RS03765	SM00917	LeuA allosteric (dimerisation) domain
TF3313_RS03770	SM01329	TF3313_RS03770
TF3313_RS03795	SM00635	Bacterial Ig-like domain 2
TF3313_RS03815	SM01018	B12 binding domain
TF3313_RS03830	SM00852	Probable molybdopterin binding domain
TF3313_RS03850	SM00903	Flavin reductase like domain
TF3313_RS03955	SM00387	Histidine kinase-like ATPases
TF3313_RS03960	SM00448	cheY-homologous receiver domain
TF3313_RS03960	SM00862	Transcriptional regulatory protein, C terminal
TF3313_RS03980	SM00855	Phosphoglycerate mutase family
TF3313_RS04060	SM00448	cheY-homologous receiver domain
TF3313_RS04080	SM00487	DEAD-like helicases superfamily
TF3313_RS04080	SM00490	helicase superfamily c-terminal domain
TF3313_RS04285	SM00965	Secretin and TonB N terminus short domain
TF3313_RS04305	SM00642	Alpha-amylase domain
TF3313_RS04350	SM00881	CoA binding domain
TF3313_RS04405	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
TF3313_RS04405	SM00474	3'-5' exonuclease
TF3313_RS04405	SM00475	5'-3' exonuclease
TF3313_RS04405	SM00482	DNA polymerase A domain
TF3313_RS04435	SM00981	TF3313_RS04435
TF3313_RS04455	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
TF3313_RS04560	SM00316	Ribosomal protein S1-like RNA-binding domain
TF3313_RS04560	SM00322	K homology RNA-binding domain
TF3313_RS04595	SM00984	UDP binding domain
TF3313_RS04675	SM00858	TF3313_RS04675
TF3313_RS04725	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TF3313_RS04725	SM00245	tail specific protease
TF3313_RS04735	SM00387	Histidine kinase-like ATPases
TF3313_RS04735	SM00433	TopoisomeraseII
TF3313_RS04755	SM00460	Transglutaminase/protease-like homologues
TF3313_RS04780	SM00825	Beta-ketoacyl synthase
TF3313_RS04785	SM00358	Double-stranded RNA binding motif
TF3313_RS04785	SM00535	Ribonuclease III family
TF3313_RS04810	SM01228	TF3313_RS04810
TF3313_RS04815	SM00465	GIY-YIG type nucleases (URI domain)
TF3313_RS04890	SM01001	AIR carboxylase
TF3313_RS04930	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
TF3313_RS04940	SM00028	Tetratricopeptide repeats
TF3313_RS04950	SM00028	Tetratricopeptide repeats
TF3313_RS04955	SM00996	S-adenosyl-L-homocysteine hydrolase
TF3313_RS04955	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
TF3313_RS04960	SM00825	Beta-ketoacyl synthase
TF3313_RS04990	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TF3313_RS05025	SM00450	Rhodanese Homology Domain
TF3313_RS05040	SM01133	TF3313_RS05040
TF3313_RS05140	SM00812	Alpha-L-fucosidase
TF3313_RS05150	SM01209	TF3313_RS05150
TF3313_RS05150	SM01210	TF3313_RS05150
TF3313_RS05210	SM00560	LamG-like jellyroll fold domain
TF3313_RS05270	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS05320	SM00448	cheY-homologous receiver domain
TF3313_RS05320	SM00862	Transcriptional regulatory protein, C terminal
TF3313_RS05325	SM00387	Histidine kinase-like ATPases
TF3313_RS05325	SM00388	His Kinase A (phosphoacceptor) domain
TF3313_RS05355	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS05405	SM00028	Tetratricopeptide repeats
TF3313_RS05415	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS05415	SM00387	Histidine kinase-like ATPases
TF3313_RS05415	SM00388	His Kinase A (phosphoacceptor) domain
TF3313_RS05415	SM00448	cheY-homologous receiver domain
TF3313_RS05425	SM00840	TF3313_RS05425
TF3313_RS05430	SM00822	TF3313_RS05430
TF3313_RS05460	SM00825	Beta-ketoacyl synthase
TF3313_RS05585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TF3313_RS05625	SM00014	Acid phosphatase homologues
TF3313_RS05670	SM00487	DEAD-like helicases superfamily
TF3313_RS05815	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
TF3313_RS05820	SM00937	TF3313_RS05820
TF3313_RS05830	SM00047	Lysozyme subfamily 2
TF3313_RS05835	SM00047	Lysozyme subfamily 2
TF3313_RS05900	SM00650	Ribosomal RNA adenine dimethylases
TF3313_RS05910	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS05935	SM00965	Secretin and TonB N terminus short domain
TF3313_RS05965	SM00633	Glycosyl hydrolase family 10
TF3313_RS06020	SM00645	Papain family cysteine protease
TF3313_RS06050	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS06075	SM00841	Elongation factor P, C-terminal
TF3313_RS06075	SM01185	TF3313_RS06075
TF3313_RS06085	SM01118	TF3313_RS06085
TF3313_RS06095	SM00883	Chaperonin 10 Kd subunit
TF3313_RS06145	SM00935	Outer membrane protein (OmpH-like)
TF3313_RS06150	SM00935	Outer membrane protein (OmpH-like)
TF3313_RS06170	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS06195	SM00965	Secretin and TonB N terminus short domain
TF3313_RS06245	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TF3313_RS06250	SM00954	Region found in RelA / SpoT proteins
TF3313_RS06305	SM00893	Electron transfer flavoprotein domain
TF3313_RS06310	SM00893	Electron transfer flavoprotein domain
TF3313_RS06320	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS06330	SM00853	MutL C terminal dimerisation domain
TF3313_RS06330	SM01340	TF3313_RS06330
TF3313_RS06360	SM00341	Helicase and RNase D C-terminal
TF3313_RS06360	SM00487	DEAD-like helicases superfamily
TF3313_RS06360	SM00490	helicase superfamily c-terminal domain
TF3313_RS06360	SM00956	TF3313_RS06360
TF3313_RS06365	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS06365	SM00994	ClpX C4-type zinc finger
TF3313_RS06365	SM01086	C-terminal, D2-small domain, of ClpB protein
TF3313_RS06380	SM00360	RNA recognition motif
TF3313_RS06410	SM00487	DEAD-like helicases superfamily
TF3313_RS06410	SM00490	helicase superfamily c-terminal domain
TF3313_RS06425	SM00028	Tetratricopeptide repeats
TF3313_RS06485	SM00788	Adenylosuccinate synthetase
TF3313_RS06520	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
TF3313_RS06520	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
TF3313_RS06520	SM00493	TF3313_RS06520
TF3313_RS06550	SM00838	Elongation factor G C-terminus
TF3313_RS06550	SM00889	Elongation factor G, domain IV
TF3313_RS06555	SM01403	TF3313_RS06555
TF3313_RS06575	SM01382	TF3313_RS06575
TF3313_RS06575	SM01383	TF3313_RS06575
TF3313_RS06590	SM00322	K homology RNA-binding domain
TF3313_RS06610	SM01374	TF3313_RS06610
TF3313_RS06615	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TF3313_RS06665	SM00316	Ribosomal protein S1-like RNA-binding domain
TF3313_RS06680	SM00363	S4 RNA-binding domain
TF3313_RS06680	SM01390	TF3313_RS06680
TF3313_RS06685	SM00662	RNA polymerases D
TF3313_RS06695	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS06710	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS06715	SM00838	Elongation factor G C-terminus
TF3313_RS06715	SM00889	Elongation factor G, domain IV
TF3313_RS06720	SM00710	Parallel beta-helix repeats
TF3313_RS06760	SM00642	Alpha-amylase domain
TF3313_RS06765	SM01400	TF3313_RS06765
TF3313_RS06820	SM01321	TF3313_RS06820
TF3313_RS06875	SM01252	TF3313_RS06875
TF3313_RS06900	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS06910	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS06930	SM00904	Riboflavin kinase
TF3313_RS06955	SM00635	Bacterial Ig-like domain 2
TF3313_RS06980	SM00836	DALR anticodon binding domain
TF3313_RS06980	SM01016	Arginyl tRNA synthetase N terminal dom
TF3313_RS06985	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
TF3313_RS06985	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
TF3313_RS06985	SM00493	TF3313_RS06985
TF3313_RS07020	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS07040	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS07110	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS07135	SM00830	Chorismate mutase type II
TF3313_RS07195	SM00387	Histidine kinase-like ATPases
TF3313_RS07195	SM00433	TopoisomeraseII
TF3313_RS07200	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS07325	SM00481	DNA polymerase alpha chain like domain
TF3313_RS07340	SM00851	MGS-like domain
TF3313_RS07345	SM00028	Tetratricopeptide repeats
TF3313_RS07365	SM00487	DEAD-like helicases superfamily
TF3313_RS07365	SM00490	helicase superfamily c-terminal domain
TF3313_RS07395	SM01091	Transporter associated domain
TF3313_RS07410	SM00478	endonuclease III
TF3313_RS07455	SM00347	helix_turn_helix multiple antibiotic resistance protein
TF3313_RS07465	SM00450	Rhodanese Homology Domain
TF3313_RS07590	SM00316	Ribosomal protein S1-like RNA-binding domain
TF3313_RS07610	SM01387	TF3313_RS07610
TF3313_RS07625	SM00419	helix_turn_helix, cAMP Regulatory protein
TF3313_RS07655	SM00965	Secretin and TonB N terminus short domain
TF3313_RS07715	SM00849	Metallo-beta-lactamase superfamily
TF3313_RS07735	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TF3313_RS07755	SM00028	Tetratricopeptide repeats
TF3313_RS07765	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS07780	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS07805	SM00155	Phospholipase D. Active site motifs.
TF3313_RS07880	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS07975	SM00873	B3/4 domain
TF3313_RS07975	SM00874	tRNA synthetase B5 domain
TF3313_RS07975	SM00896	Ferredoxin-fold anticodon binding domain
TF3313_RS08080	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TF3313_RS08105	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS08120	SM01324	TF3313_RS08120
TF3313_RS08125	SM00635	Bacterial Ig-like domain 2
TF3313_RS08160	SM00635	Bacterial Ig-like domain 2
TF3313_RS08165	SM00028	Tetratricopeptide repeats
TF3313_RS08165	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS08165	SM00387	Histidine kinase-like ATPases
TF3313_RS08165	SM00388	His Kinase A (phosphoacceptor) domain
TF3313_RS08165	SM00448	cheY-homologous receiver domain
TF3313_RS08170	SM00758	TF3313_RS08170
TF3313_RS08210	SM00854	Bacterial capsule synthesis protein PGA_cap
TF3313_RS08260	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
TF3313_RS08265	SM00649	Ribosomal protein L11/L12
TF3313_RS08290	SM00663	RNA polymerase I subunit A N-terminus
TF3313_RS08315	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
TF3313_RS08340	SM00487	DEAD-like helicases superfamily
TF3313_RS08425	SM00518	AP endonuclease family 2
TF3313_RS08455	SM00642	Alpha-amylase domain
TF3313_RS08530	SM00635	Bacterial Ig-like domain 2
TF3313_RS08545	SM00341	Helicase and RNase D C-terminal
TF3313_RS08560	SM00387	Histidine kinase-like ATPases
TF3313_RS08560	SM00388	His Kinase A (phosphoacceptor) domain
TF3313_RS08565	SM00448	cheY-homologous receiver domain
TF3313_RS08565	SM00862	Transcriptional regulatory protein, C terminal
TF3313_RS08605	SM00822	TF3313_RS08605
TF3313_RS08690	SM00316	Ribosomal protein S1-like RNA-binding domain
TF3313_RS08690	SM00732	Likely ribonuclease with RNase H fold.
TF3313_RS08725	SM01240	TF3313_RS08725
TF3313_RS08730	SM00899	TF3313_RS08730
TF3313_RS08745	SM00448	cheY-homologous receiver domain
TF3313_RS08745	SM00850	LytTr DNA-binding domain
TF3313_RS08825	SM01192	TF3313_RS08825
TF3313_RS08825	SM01193	TF3313_RS08825
TF3313_RS08935	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS08980	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
TF3313_RS09025	SM00322	K homology RNA-binding domain
TF3313_RS09025	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TF3313_RS09035	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS09055	SM00493	TF3313_RS09055
TF3313_RS09085	SM00986	Uracil DNA glycosylase superfamily
TF3313_RS09085	SM00987	UreE urease accessory protein, C-terminal domain 
TF3313_RS09120	SM00900	TF3313_RS09120
TF3313_RS09250	SM00822	TF3313_RS09250
TF3313_RS09285	SM01217	TF3313_RS09285
TF3313_RS09295	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS09295	SM01086	C-terminal, D2-small domain, of ClpB protein
TF3313_RS09340	SM01130	TF3313_RS09340
TF3313_RS09435	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TF3313_RS09505	SM01126	TF3313_RS09505
TF3313_RS09510	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS09535	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS09585	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS09590	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS09750	SM01290	TF3313_RS09750
TF3313_RS09840	SM01230	TF3313_RS09840
TF3313_RS09905	SM00487	DEAD-like helicases superfamily
TF3313_RS10010	SM00047	Lysozyme subfamily 2
TF3313_RS10255	SM00411	bacterial (prokaryotic) histone like domain
TF3313_RS10260	SM00905	Dihydroneopterin aldolase
TF3313_RS10270	SM01065	Starch binding domain
TF3313_RS10295	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS10355	SM00670	Large family of predicted nucleotide-binding domains
TF3313_RS10400	SM00479	TF3313_RS10400
TF3313_RS10420	SM00967	RNA 2'-O ribose methyltransferase substrate binding
TF3313_RS10440	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TF3313_RS10460	SM00935	Outer membrane protein (OmpH-like)
TF3313_RS10475	SM00100	Cyclic nucleotide-monophosphate binding domain
TF3313_RS10475	SM00419	helix_turn_helix, cAMP Regulatory protein
TF3313_RS10565	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS10600	SM00563	Phosphate acyltransferases
TF3313_RS10745	SM01005	Alanine racemase, C-terminal domain
TF3313_RS10755	SM00257	Lysin motif
TF3313_RS10835	SM00460	Transglutaminase/protease-like homologues
TF3313_RS10920	SM00257	Lysin motif
TF3313_RS10960	SM00098	Alkaline phosphatase homologues
TF3313_RS11055	SM00843	TF3313_RS11055
TF3313_RS11075	SM00977	TilS substrate C-terminal domain
TF3313_RS11080	SM00357	Cold shock protein domain
TF3313_RS11080	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS11080	SM00959	Rho termination factor, N-terminal domain
TF3313_RS11095	SM00421	helix_turn_helix, Lux Regulon
TF3313_RS11245	SM00812	Alpha-L-fucosidase
TF3313_RS11290	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS11315	SM00534	ATPase domain of DNA mismatch repair MUTS family
TF3313_RS11345	SM00900	TF3313_RS11345
TF3313_RS11470	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS11505	SM00965	Secretin and TonB N terminus short domain
TF3313_RS11555	SM00965	Secretin and TonB N terminus short domain
TF3313_RS11625	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS11635	SM00487	DEAD-like helicases superfamily
TF3313_RS11635	SM00490	helicase superfamily c-terminal domain
TF3313_RS11640	SM00062	Bacterial periplasmic substrate-binding proteins
TF3313_RS11685	SM00028	Tetratricopeptide repeats
TF3313_RS11730	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS11730	SM00387	Histidine kinase-like ATPases
TF3313_RS11730	SM00388	His Kinase A (phosphoacceptor) domain
TF3313_RS11730	SM00448	cheY-homologous receiver domain
TF3313_RS11750	SM00060	Fibronectin type 3 domain
TF3313_RS11750	SM00635	Bacterial Ig-like domain 2
TF3313_RS11755	SM00635	Bacterial Ig-like domain 2
TF3313_RS11760	SM00060	Fibronectin type 3 domain
TF3313_RS11765	SM00060	Fibronectin type 3 domain
TF3313_RS11765	SM00635	Bacterial Ig-like domain 2
TF3313_RS11770	SM00635	Bacterial Ig-like domain 2
TF3313_RS11775	SM00060	Fibronectin type 3 domain
TF3313_RS11775	SM00635	Bacterial Ig-like domain 2
TF3313_RS11785	SM00849	Metallo-beta-lactamase superfamily
TF3313_RS11800	SM00434	DNA Topoisomerase IV
TF3313_RS11805	SM00028	Tetratricopeptide repeats
TF3313_RS11820	SM00014	Acid phosphatase homologues
TF3313_RS11825	SM00028	Tetratricopeptide repeats
TF3313_RS11835	SM00028	Tetratricopeptide repeats
TF3313_RS11840	SM00327	von Willebrand factor (vWF) type A domain
TF3313_RS11845	SM00327	von Willebrand factor (vWF) type A domain
TF3313_RS11865	SM00411	bacterial (prokaryotic) histone like domain
TF3313_RS11870	SM00411	bacterial (prokaryotic) histone like domain
TF3313_RS11875	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS11880	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS11880	SM00962	SRP54-type protein, GTPase domain
TF3313_RS11880	SM00963	SRP54-type protein, helical bundle domain
TF3313_RS11945	SM00316	Ribosomal protein S1-like RNA-binding domain
TF3313_RS11950	SM00411	bacterial (prokaryotic) histone like domain
TF3313_RS11955	SM00478	endonuclease III
TF3313_RS11965	SM00116	Domain in cystathionine beta-synthase and other proteins.
TF3313_RS11965	SM01091	Transporter associated domain
TF3313_RS11980	SM00635	Bacterial Ig-like domain 2
TF3313_RS12020	SM00014	Acid phosphatase homologues
TF3313_RS12025	SM00014	Acid phosphatase homologues
TF3313_RS12115	SM00984	UDP binding domain
TF3313_RS12165	SM01011	Aminopeptidase P, N-terminal domain
TF3313_RS12220	SM00028	Tetratricopeptide repeats
TF3313_RS12240	SM00062	Bacterial periplasmic substrate-binding proteins
TF3313_RS12255	SM00850	LytTr DNA-binding domain
TF3313_RS12260	SM00240	Forkhead associated domain
TF3313_RS12280	SM00220	Serine/Threonine protein kinases, catalytic domain
TF3313_RS12370	SM00387	Histidine kinase-like ATPases
TF3313_RS12405	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TF3313_RS12405	SM00245	tail specific protease
TF3313_RS12465	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS12470	SM00563	Phosphate acyltransferases
TF3313_RS12515	SM00028	Tetratricopeptide repeats
TF3313_RS12535	SM00957	SecA DEAD-like domain
TF3313_RS12535	SM00958	SecA preprotein cross-linking domain
TF3313_RS12540	SM00342	helix_turn_helix, arabinose operon control protein
TF3313_RS12540	SM00387	Histidine kinase-like ATPases
TF3313_RS12540	SM00388	His Kinase A (phosphoacceptor) domain
TF3313_RS12540	SM00448	cheY-homologous receiver domain
TF3313_RS12545	SM00028	Tetratricopeptide repeats
TF3313_RS12555	SM00732	Likely ribonuclease with RNase H fold.
TF3313_RS12570	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS12570	SM00962	SRP54-type protein, GTPase domain
TF3313_RS12570	SM00963	SRP54-type protein, helical bundle domain
TF3313_RS12620	SM00400	zinc finger
TF3313_RS12620	SM00493	TF3313_RS12620
TF3313_RS12680	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS12680	SM00464	Found in ATP-dependent protease La (LON)
TF3313_RS12800	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS12830	SM00530	Helix-turn-helix XRE-family like proteins 
TF3313_RS12865	SM00890	Domain of unknown function
TF3313_RS12885	SM00244	prohibitin homologues
TF3313_RS13000	SM00729	Elongator protein 3, MiaB family, Radical SAM
TF3313_RS13020	SM00487	DEAD-like helicases superfamily
TF3313_RS13020	SM00490	helicase superfamily c-terminal domain
TF3313_RS13035	SM00506	Appr-1"-p processing enzyme
TF3313_RS13150	SM01126	TF3313_RS13150
TF3313_RS13255	SM00047	Lysozyme subfamily 2
TF3313_RS13325	SM01252	TF3313_RS13325
TF3313_RS13385	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS13520	SM00857	Resolvase, N terminal domain
TF3313_RS13605	SM00487	DEAD-like helicases superfamily
TF3313_RS13605	SM00490	helicase superfamily c-terminal domain
TF3313_RS13660	SM00740	TF3313_RS13660
TF3313_RS13665	SM00363	S4 RNA-binding domain
TF3313_RS13680	SM00881	CoA binding domain
TF3313_RS13705	SM00245	tail specific protease
TF3313_RS13725	SM00563	Phosphate acyltransferases
TF3313_RS13790	SM00487	DEAD-like helicases superfamily
TF3313_RS13865	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS13895	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
TF3313_RS13900	SM00474	3'-5' exonuclease
TF3313_RS13910	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
TF3313_RS13940	SM00382	ATPases associated with a variety of cellular activities
TF3313_RS13945	SM00798	AICARFT/IMPCHase bienzyme
TF3313_RS13945	SM00851	MGS-like domain
TF3313_RS14010	SM00646	TF3313_RS14010
