locus-tag class description CA604_RS00005 PF11638 DnaA N-terminal domain CA604_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CA604_RS00005 PF00308 Bacterial dnaA protein CA604_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CA604_RS00010 PF02767 DNA polymerase III beta subunit, central domain CA604_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CA604_RS00015 PF00204 DNA gyrase B CA604_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CA604_RS00015 PF18053 DNA gyrase B subunit insert domain CA604_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS00015 PF01751 Toprim domain CA604_RS00020 PF00849 RNA pseudouridylate synthase CA604_RS00020 PF01479 S4 domain CA604_RS00025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CA604_RS00025 PF00005 ABC transporter CA604_RS00030 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS00035 PF12911 N-terminal TM domain of oligopeptide transport permease C CA604_RS00035 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS00040 PF00005 ABC transporter CA604_RS00040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CA604_RS00045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CA604_RS00055 PF13361 UvrD-like helicase C-terminal domain CA604_RS00055 PF00580 UvrD/REP helicase N-terminal domain CA604_RS00060 PF00175 Oxidoreductase NAD-binding domain CA604_RS00060 PF00970 Oxidoreductase FAD-binding domain CA604_RS00070 PF01131 DNA topoisomerase CA604_RS00070 PF01751 Toprim domain CA604_RS00075 PF04055 Radical SAM superfamily CA604_RS00075 PF06969 HemN C-terminal domain CA604_RS00085 PF00749 tRNA synthetases class I (E and Q), catalytic domain CA604_RS00090 PF04361 Protein of unknown function (DUF494) CA604_RS00100 PF01323 DSBA-like thioredoxin domain CA604_RS00100 PF00085 Thioredoxin CA604_RS00110 PF00750 tRNA synthetases class I (R) CA604_RS00110 PF05746 DALR anticodon binding domain CA604_RS00110 PF03485 Arginyl tRNA synthetase N terminal domain CA604_RS00120 PF00682 HMGL-like CA604_RS00120 PF08502 LeuA allosteric (dimerisation) domain CA604_RS00140 PF00210 Ferritin-like domain CA604_RS00150 PF00009 Elongation factor Tu GTP binding domain CA604_RS00150 PF16658 Class II release factor RF3, C-terminal domain CA604_RS00150 PF03144 Elongation factor Tu domain 2 CA604_RS00170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CA604_RS00170 PF01926 50S ribosome-binding GTPase CA604_RS00190 PF03956 Lysine exporter LysO CA604_RS00195 PF00497 Bacterial extracellular solute-binding proteins, family 3 CA604_RS00200 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS00205 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS00210 PF00005 ABC transporter CA604_RS00215 PF01925 Sulfite exporter TauE/SafE CA604_RS00230 PF01040 UbiA prenyltransferase family CA604_RS00240 PF02938 GAD domain CA604_RS00240 PF00152 tRNA synthetases class II (D, K and N) CA604_RS00240 PF01336 OB-fold nucleic acid binding domain CA604_RS00250 PF02163 Peptidase family M50 CA604_RS00255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CA604_RS00260 PF00534 Glycosyl transferases group 1 CA604_RS00260 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CA604_RS00270 PF03309 Type III pantothenate kinase CA604_RS00280 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CA604_RS00285 PF07943 Penicillin-binding protein 5, C-terminal domain CA604_RS00285 PF00768 D-alanyl-D-alanine carboxypeptidase CA604_RS00290 PF01063 Amino-transferase class IV CA604_RS00295 PF04359 Protein of unknown function (DUF493) CA604_RS00300 PF03099 Biotin/lipoate A/B protein ligase family CA604_RS00315 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CA604_RS00315 PF04055 Radical SAM superfamily CA604_RS00320 PF16363 GDP-mannose 4,6 dehydratase CA604_RS00325 PF07690 Major Facilitator Superfamily CA604_RS00330 PF00132 Bacterial transferase hexapeptide (six repeats) CA604_RS00330 PF12804 MobA-like NTP transferase domain CA604_RS00330 PF14602 Hexapeptide repeat of succinyl-transferase CA604_RS00340 PF04545 Sigma-70, region 4 CA604_RS00340 PF00140 Sigma-70 factor, region 1.2 CA604_RS00340 PF04542 Sigma-70 region 2 CA604_RS00350 PF00271 Helicase conserved C-terminal domain CA604_RS00350 PF03880 DbpA RNA binding domain CA604_RS00350 PF00270 DEAD/DEAH box helicase CA604_RS00355 PF00551 Formyl transferase CA604_RS00355 PF02911 Formyl transferase, C-terminal domain CA604_RS00360 PF01189 16S rRNA methyltransferase RsmB/F CA604_RS00360 PF01029 NusB family CA604_RS00370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS00370 PF00672 HAMP domain CA604_RS00375 PF02954 Bacterial regulatory protein, Fis family CA604_RS00375 PF00072 Response regulator receiver domain CA604_RS00375 PF00158 Sigma-54 interaction domain CA604_RS00380 PF02254 TrkA-N domain CA604_RS00380 PF02080 TrkA-C domain CA604_RS00385 PF02386 Cation transport protein CA604_RS00390 PF00588 SpoU rRNA Methylase family CA604_RS00395 PF00156 Phosphoribosyl transferase domain CA604_RS00400 PF08241 Methyltransferase domain CA604_RS00410 PF00004 ATPase family associated with various cellular activities (AAA) CA604_RS00410 PF07724 AAA domain (Cdc48 subfamily) CA604_RS00410 PF17871 AAA lid domain CA604_RS00410 PF10431 C-terminal, D2-small domain, of ClpB protein CA604_RS00430 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CA604_RS00435 PF13677 Membrane MotB of proton-channel complex MotA/MotB CA604_RS00435 PF00691 OmpA family CA604_RS00440 PF14331 ImcF-related N-terminal domain CA604_RS00440 PF06744 Type VI secretion protein IcmF C-terminal CA604_RS00440 PF06761 Intracellular multiplication and human macrophage-killing CA604_RS00460 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CA604_RS00465 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CA604_RS00470 PF05638 Type VI secretion system effector, Hcp CA604_RS00475 PF07024 ImpE protein CA604_RS00480 PF04965 Gene 25-like lysozyme CA604_RS00485 PF05947 Type VI secretion system, TssF CA604_RS00495 PF00593 TonB dependent receptor CA604_RS00495 PF07715 TonB-dependent Receptor Plug Domain CA604_RS00550 PF06715 Gp5 C-terminal repeat (3 copies) CA604_RS00550 PF04717 Type VI secretion system, phage-baseplate injector CA604_RS00720 PF02556 Preprotein translocase subunit SecB CA604_RS00725 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CA604_RS00725 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CA604_RS00730 PF00462 Glutaredoxin CA604_RS00740 PF00300 Histidine phosphatase superfamily (branch 1) CA604_RS00745 PF01551 Peptidase family M23 CA604_RS00750 PF03572 Peptidase family S41 CA604_RS00750 PF13180 PDZ domain CA604_RS00755 PF00899 ThiF family CA604_RS00760 PF03480 Bacterial extracellular solute-binding protein, family 7 CA604_RS00775 PF00119 ATP synthase A chain CA604_RS00780 PF00137 ATP synthase subunit C CA604_RS00785 PF00430 ATP synthase B/B' CF(0) CA604_RS00790 PF00213 ATP synthase delta (OSCP) subunit CA604_RS00795 PF02874 ATP synthase alpha/beta family, beta-barrel domain CA604_RS00795 PF00306 ATP synthase alpha/beta chain, C terminal domain CA604_RS00795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CA604_RS00800 PF00231 ATP synthase CA604_RS00805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CA604_RS00805 PF02874 ATP synthase alpha/beta family, beta-barrel domain CA604_RS00810 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CA604_RS00830 PF00005 ABC transporter CA604_RS00845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CA604_RS00850 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CA604_RS00855 PF03480 Bacterial extracellular solute-binding protein, family 7 CA604_RS00860 PF07683 Cobalamin synthesis protein cobW C-terminal domain CA604_RS00860 PF02492 CobW/HypB/UreG, nucleotide-binding domain CA604_RS00865 PF01475 Ferric uptake regulator family CA604_RS00870 PF00005 ABC transporter CA604_RS00875 PF00950 ABC 3 transport family CA604_RS00885 PF02899 Phage integrase, N-terminal SAM-like domain CA604_RS00885 PF00589 Phage integrase family CA604_RS00895 PF01678 Diaminopimelate epimerase CA604_RS00900 PF02934 GatB/GatE catalytic domain CA604_RS00900 PF02637 GatB domain CA604_RS00905 PF01425 Amidase CA604_RS00910 PF02686 Glu-tRNAGln amidotransferase C subunit CA604_RS00930 PF03717 Penicillin-binding Protein dimerisation domain CA604_RS00930 PF00905 Penicillin binding protein transpeptidase domain CA604_RS00935 PF01098 Cell cycle protein CA604_RS00940 PF18075 FtsX extracellular domain CA604_RS00945 PF00005 ABC transporter CA604_RS00950 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS00955 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS00960 PF00005 ABC transporter CA604_RS00975 PF02569 Pantoate-beta-alanine ligase CA604_RS00980 PF02616 Segregation and condensation protein ScpA CA604_RS00990 PF00196 Bacterial regulatory proteins, luxR family CA604_RS00990 PF00072 Response regulator receiver domain CA604_RS01000 PF01121 Dephospho-CoA kinase CA604_RS01005 PF07072 Cell division protein CA604_RS01010 PF00132 Bacterial transferase hexapeptide (six repeats) CA604_RS01015 PF00293 NUDIX domain CA604_RS01025 PF00348 Polyprenyl synthetase CA604_RS01030 PF00920 Dehydratase family CA604_RS01035 PF01018 GTP1/OBG CA604_RS01035 PF01926 50S ribosome-binding GTPase CA604_RS01050 PF00004 ATPase family associated with various cellular activities (AAA) CA604_RS01050 PF07724 AAA domain (Cdc48 subfamily) CA604_RS01050 PF10431 C-terminal, D2-small domain, of ClpB protein CA604_RS01055 PF00227 Proteasome subunit CA604_RS01065 PF01258 Prokaryotic dksA/traR C4-type zinc finger CA604_RS01075 PF01208 Uroporphyrinogen decarboxylase (URO-D) CA604_RS01080 PF00270 DEAD/DEAH box helicase CA604_RS01080 PF00271 Helicase conserved C-terminal domain CA604_RS01080 PF17764 3′ DNA-binding domain (3′BD) CA604_RS01080 PF18074 Primosomal protein N C-terminal domain CA604_RS01080 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CA604_RS01085 PF01557 Fumarylacetoacetate (FAA) hydrolase family CA604_RS01095 PF16325 Peptidase family U32 C-terminal domain CA604_RS01095 PF01136 Peptidase family U32 CA604_RS01105 PF09827 CRISPR associated protein Cas2 CA604_RS01110 PF01867 CRISPR associated protein Cas1 CA604_RS01140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CA604_RS01145 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS01150 PF12911 N-terminal TM domain of oligopeptide transport permease C CA604_RS01150 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS01155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CA604_RS01155 PF00005 ABC transporter CA604_RS01160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CA604_RS01160 PF00005 ABC transporter CA604_RS01175 PF01016 Ribosomal L27 protein CA604_RS01180 PF00829 Ribosomal prokaryotic L21 protein CA604_RS01190 PF00834 Ribulose-phosphate 3 epimerase family CA604_RS01195 PF03562 MltA specific insert domain CA604_RS01195 PF06725 3D domain CA604_RS01200 PF13098 Thioredoxin-like domain CA604_RS01200 PF10411 Disulfide bond isomerase protein N-terminus CA604_RS01210 PF04972 BON domain CA604_RS01215 PF13580 SIS domain CA604_RS01220 PF02021 Uncharacterised protein family UPF0102 CA604_RS01225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CA604_RS01230 PF03330 Lytic transglycolase CA604_RS01230 PF05036 Sporulation related domain CA604_RS01235 PF03668 P-loop ATPase protein family CA604_RS01240 PF07475 HPr Serine kinase C-terminal domain CA604_RS01240 PF02603 HPr Serine kinase N terminus CA604_RS01245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CA604_RS01250 PF00005 ABC transporter CA604_RS01270 PF01380 SIS domain CA604_RS01270 PF00571 CBS domain CA604_RS01275 PF00156 Phosphoribosyl transferase domain CA604_RS01280 PF00585 C-terminal regulatory domain of Threonine dehydratase CA604_RS01280 PF00291 Pyridoxal-phosphate dependent enzyme CA604_RS01285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS01285 PF00512 His Kinase A (phospho-acceptor) domain CA604_RS01285 PF00989 PAS fold CA604_RS01285 PF11808 Phosphate regulon sensor protein PhoR CA604_RS01290 PF00072 Response regulator receiver domain CA604_RS01290 PF00486 Transcriptional regulatory protein, C terminal CA604_RS01295 PF01209 ubiE/COQ5 methyltransferase family CA604_RS01305 PF03109 ABC1 family CA604_RS01310 PF01467 Cytidylyltransferase-like CA604_RS01320 PF08543 Phosphomethylpyrimidine kinase CA604_RS01325 PF03976 Polyphosphate kinase 2 (PPK2) CA604_RS01330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CA604_RS01330 PF07992 Pyridine nucleotide-disulphide oxidoreductase CA604_RS01340 PF06508 Queuosine biosynthesis protein QueC CA604_RS01345 PF01242 6-pyruvoyl tetrahydropterin synthase CA604_RS01350 PF04055 Radical SAM superfamily CA604_RS01375 PF01488 Shikimate / quinate 5-dehydrogenase CA604_RS01375 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CA604_RS01375 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CA604_RS01380 PF00472 RF-1 domain CA604_RS01380 PF03462 PCRF domain CA604_RS01385 PF13847 Methyltransferase domain CA604_RS01385 PF17827 PrmC N-terminal domain CA604_RS01390 PF00462 Glutaredoxin CA604_RS01395 PF02441 Flavoprotein CA604_RS01405 PF00939 Sodium:sulfate symporter transmembrane region CA604_RS01410 PF01266 FAD dependent oxidoreductase CA604_RS01440 PF00202 Aminotransferase class-III CA604_RS01440 PF04055 Radical SAM superfamily CA604_RS01440 PF06968 Biotin and Thiamin Synthesis associated domain CA604_RS01445 PF00155 Aminotransferase class I and II CA604_RS01450 PF04301 Protein of unknown function (DUF452) CA604_RS01455 PF08241 Methyltransferase domain CA604_RS01465 PF03009 Glycerophosphoryl diester phosphodiesterase family CA604_RS01470 PF08240 Alcohol dehydrogenase GroES-like domain CA604_RS01470 PF00107 Zinc-binding dehydrogenase CA604_RS01485 PF01169 Uncharacterized protein family UPF0016 CA604_RS01490 PF04575 Protein of unknown function (DUF560) CA604_RS01495 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CA604_RS01495 PF14489 QueF-like protein CA604_RS01500 PF17484 N-Lobe handle Tf-binding protein B CA604_RS01500 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B CA604_RS01500 PF17483 C-lobe handle domain of Tf-binding protein B CA604_RS01505 PF00593 TonB dependent receptor CA604_RS01505 PF07715 TonB-dependent Receptor Plug Domain CA604_RS01510 PF01171 PP-loop family CA604_RS01520 PF07992 Pyridine nucleotide-disulphide oxidoreductase CA604_RS01525 PF13396 Phospholipase_D-nuclease N-terminal CA604_RS01525 PF13091 PLD-like domain CA604_RS01530 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS01535 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS01540 PF00497 Bacterial extracellular solute-binding proteins, family 3 CA604_RS01550 PF06968 Biotin and Thiamin Synthesis associated domain CA604_RS01550 PF04055 Radical SAM superfamily CA604_RS01555 PF00582 Universal stress protein family CA604_RS01560 PF00929 Exonuclease CA604_RS01565 PF00929 Exonuclease CA604_RS01575 PF00551 Formyl transferase CA604_RS01600 PF01510 N-acetylmuramoyl-L-alanine amidase CA604_RS01610 PF01578 Cytochrome C assembly protein CA604_RS01615 PF02978 Signal peptide binding domain CA604_RS01615 PF02881 SRP54-type protein, helical bundle domain CA604_RS01615 PF00448 SRP54-type protein, GTPase domain CA604_RS01620 PF01476 LysM domain CA604_RS01620 PF04972 BON domain CA604_RS01625 PF02390 Putative methyltransferase CA604_RS01630 PF01588 Putative tRNA binding domain CA604_RS01630 PF09334 tRNA synthetases class I (M) CA604_RS01640 PF10609 NUBPL iron-transfer P-loop NTPase CA604_RS01655 PF00692 dUTPase CA604_RS01670 PF01571 Aminomethyltransferase folate-binding domain CA604_RS01670 PF08669 Glycine cleavage T-protein C-terminal barrel domain CA604_RS01675 PF01597 Glycine cleavage H-protein CA604_RS01680 PF02347 Glycine cleavage system P-protein CA604_RS01685 PF00303 Thymidylate synthase CA604_RS01690 PF00186 Dihydrofolate reductase CA604_RS01695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CA604_RS01695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CA604_RS01695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CA604_RS01700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CA604_RS01700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CA604_RS01700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CA604_RS01700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CA604_RS01705 PF02913 FAD linked oxidases, C-terminal domain CA604_RS01705 PF01565 FAD binding domain CA604_RS01710 PF13181 Tetratricopeptide repeat CA604_RS01710 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CA604_RS01715 PF03550 Outer membrane lipoprotein LolB CA604_RS01720 PF08544 GHMP kinases C terminal CA604_RS01720 PF00288 GHMP kinases N terminal domain CA604_RS01730 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CA604_RS01730 PF14572 Phosphoribosyl synthetase-associated domain CA604_RS01735 PF01386 Ribosomal L25p family CA604_RS01735 PF14693 Ribosomal protein TL5, C-terminal domain CA604_RS01740 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS01740 PF05658 Head domain of trimeric autotransporter adhesin CA604_RS01740 PF03895 YadA-like membrane anchor domain CA604_RS01740 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS01745 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS01745 PF03895 YadA-like membrane anchor domain CA604_RS01745 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CA604_RS01745 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS01760 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS01760 PF03895 YadA-like membrane anchor domain CA604_RS01760 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS01760 PF05658 Head domain of trimeric autotransporter adhesin CA604_RS01770 PF01195 Peptidyl-tRNA hydrolase CA604_RS01780 PF01926 50S ribosome-binding GTPase CA604_RS01780 PF06071 Protein of unknown function (DUF933) CA604_RS01785 PF00037 4Fe-4S binding domain CA604_RS01790 PF01467 Cytidylyltransferase-like CA604_RS01800 PF02881 SRP54-type protein, helical bundle domain CA604_RS01800 PF00448 SRP54-type protein, GTPase domain CA604_RS01815 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CA604_RS01815 PF00925 GTP cyclohydrolase II CA604_RS01820 PF00885 6,7-dimethyl-8-ribityllumazine synthase CA604_RS01825 PF01029 NusB family CA604_RS01830 PF02769 AIR synthase related protein, C-terminal domain CA604_RS01830 PF00586 AIR synthase related protein, N-terminal domain CA604_RS01835 PF04608 Phosphatidylglycerophosphatase A CA604_RS01840 PF02464 Competence-damaged protein CA604_RS01845 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CA604_RS01850 PF01219 Prokaryotic diacylglycerol kinase CA604_RS01855 PF00118 TCP-1/cpn60 chaperonin family CA604_RS01860 PF00166 Chaperonin 10 Kd subunit CA604_RS01865 PF00497 Bacterial extracellular solute-binding proteins, family 3 CA604_RS01880 PF00561 alpha/beta hydrolase fold CA604_RS01890 PF00691 OmpA family CA604_RS01895 PF04052 TolB amino-terminal domain CA604_RS01895 PF07676 WD40-like Beta Propeller Repeat CA604_RS01905 PF02472 Biopolymer transport protein ExbD/TolR CA604_RS01910 PF01618 MotA/TolQ/ExbB proton channel family CA604_RS01915 PF03061 Thioesterase superfamily CA604_RS01920 PF04073 Aminoacyl-tRNA editing domain CA604_RS01920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CA604_RS01920 PF03129 Anticodon binding domain CA604_RS01925 PF00293 NUDIX domain CA604_RS01930 PF12631 MnmE helical domain CA604_RS01930 PF01926 50S ribosome-binding GTPase CA604_RS01930 PF10396 GTP-binding protein TrmE N-terminus CA604_RS01950 PF01790 Prolipoprotein diacylglyceryl transferase CA604_RS01955 PF01619 Proline dehydrogenase CA604_RS01955 PF14850 DNA-binding domain of Proline dehydrogenase CA604_RS01955 PF00171 Aldehyde dehydrogenase family CA604_RS01955 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CA604_RS01960 PF00474 Sodium:solute symporter family CA604_RS01965 PF04072 Leucine carboxyl methyltransferase CA604_RS02005 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS02005 PF03895 YadA-like membrane anchor domain CA604_RS02005 PF05658 Head domain of trimeric autotransporter adhesin CA604_RS02010 PF00209 Sodium:neurotransmitter symporter family CA604_RS02015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CA604_RS02015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CA604_RS02020 PF00132 Bacterial transferase hexapeptide (six repeats) CA604_RS02030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CA604_RS02035 PF01061 ABC-2 type transporter CA604_RS02040 PF14524 Wzt C-terminal domain CA604_RS02040 PF00005 ABC transporter CA604_RS02060 PF13537 Glutamine amidotransferase domain CA604_RS02060 PF00733 Asparagine synthase CA604_RS02070 PF02350 UDP-N-acetylglucosamine 2-epimerase CA604_RS02075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CA604_RS02080 PF02397 Bacterial sugar transferase CA604_RS02095 PF01757 Acyltransferase family CA604_RS02100 PF02719 Polysaccharide biosynthesis protein CA604_RS02105 PF03971 Monomeric isocitrate dehydrogenase CA604_RS02115 PF01979 Amidohydrolase family CA604_RS02120 PF01596 O-methyltransferase CA604_RS02130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CA604_RS02135 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CA604_RS02140 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS02145 PF12911 N-terminal TM domain of oligopeptide transport permease C CA604_RS02145 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS02150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CA604_RS02150 PF00005 ABC transporter CA604_RS02155 PF00005 ABC transporter CA604_RS02155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CA604_RS02160 PF08240 Alcohol dehydrogenase GroES-like domain CA604_RS02160 PF08659 KR domain CA604_RS02160 PF16197 Ketoacyl-synthetase C-terminal extension CA604_RS02160 PF00109 Beta-ketoacyl synthase, N-terminal domain CA604_RS02160 PF00698 Acyl transferase domain CA604_RS02160 PF02801 Beta-ketoacyl synthase, C-terminal domain CA604_RS02160 PF14765 Polyketide synthase dehydratase CA604_RS02160 PF00550 Phosphopantetheine attachment site CA604_RS02170 PF00121 Triosephosphate isomerase CA604_RS02175 PF03840 Preprotein translocase SecG subunit CA604_RS02195 PF00127 Copper binding proteins, plastocyanin/azurin family CA604_RS02200 PF13609 Gram-negative porin CA604_RS02205 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CA604_RS02210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CA604_RS02215 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CA604_RS02220 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CA604_RS02230 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CA604_RS02230 PF10531 SLBB domain CA604_RS02230 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CA604_RS02235 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CA604_RS02235 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CA604_RS02235 PF00384 Molybdopterin oxidoreductase CA604_RS02240 PF00146 NADH dehydrogenase CA604_RS02245 PF12838 4Fe-4S dicluster domain CA604_RS02250 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CA604_RS02255 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CA604_RS02260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CA604_RS02260 PF00361 Proton-conducting membrane transporter CA604_RS02265 PF00361 Proton-conducting membrane transporter CA604_RS02265 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CA604_RS02270 PF00361 Proton-conducting membrane transporter CA604_RS02285 PF02559 CarD-like/TRCF domain CA604_RS02285 PF00270 DEAD/DEAH box helicase CA604_RS02285 PF17757 UvrB interaction domain CA604_RS02285 PF03461 TRCF domain CA604_RS02285 PF00271 Helicase conserved C-terminal domain CA604_RS02290 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CA604_RS02290 PF02542 YgbB family CA604_RS02295 PF02627 Carboxymuconolactone decarboxylase family CA604_RS02300 PF00578 AhpC/TSA family CA604_RS02305 PF00512 His Kinase A (phospho-acceptor) domain CA604_RS02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS02305 PF00672 HAMP domain CA604_RS02310 PF00486 Transcriptional regulatory protein, C terminal CA604_RS02310 PF00072 Response regulator receiver domain CA604_RS02315 PF00814 Glycoprotease family CA604_RS02325 PF07690 Major Facilitator Superfamily CA604_RS02330 PF02463 RecF/RecN/SMC N terminal domain CA604_RS02330 PF06470 SMC proteins Flexible Hinge Domain CA604_RS02340 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CA604_RS02340 PF12826 Helix-hairpin-helix motif CA604_RS02340 PF03120 NAD-dependent DNA ligase OB-fold domain CA604_RS02340 PF00533 BRCA1 C Terminus (BRCT) domain CA604_RS02340 PF01653 NAD-dependent DNA ligase adenylation domain CA604_RS02355 PF04279 Intracellular septation protein A CA604_RS02380 PF12399 Branched-chain amino acid ATP-binding cassette transporter CA604_RS02380 PF00005 ABC transporter CA604_RS02385 PF00005 ABC transporter CA604_RS02390 PF00730 HhH-GPD superfamily base excision DNA repair protein CA604_RS02390 PF00633 Helix-hairpin-helix motif CA604_RS02390 PF10576 Iron-sulfur binding domain of endonuclease III CA604_RS02395 PF04060 Putative Fe-S cluster CA604_RS02400 PF00970 Oxidoreductase FAD-binding domain CA604_RS02400 PF00175 Oxidoreductase NAD-binding domain CA604_RS02405 PF11953 Domain of unknown function (DUF3470) CA604_RS02405 PF00037 4Fe-4S binding domain CA604_RS02410 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CA604_RS02410 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CA604_RS02415 PF13291 ACT domain CA604_RS02415 PF04607 Region found in RelA / SpoT proteins CA604_RS02415 PF02824 TGS domain CA604_RS02420 PF17848 Acetyl-coA carboxylase zinc finger domain CA604_RS02420 PF01039 Carboxyl transferase domain CA604_RS02425 PF00575 S1 RNA binding domain CA604_RS02425 PF10150 Ribonuclease E/G family CA604_RS02425 PF12111 Polyribonucleotide phosphorylase C terminal CA604_RS02430 PF00849 RNA pseudouridylate synthase CA604_RS02430 PF01479 S4 domain CA604_RS02435 PF13419 Haloacid dehalogenase-like hydrolase CA604_RS02440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CA604_RS02445 PF02545 Maf-like protein CA604_RS02455 PF01783 Ribosomal L32p protein family CA604_RS02460 PF02504 Fatty acid synthesis protein CA604_RS02465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CA604_RS02465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CA604_RS02470 PF00698 Acyl transferase domain CA604_RS02480 PF00550 Phosphopantetheine attachment site CA604_RS02485 PF00109 Beta-ketoacyl synthase, N-terminal domain CA604_RS02485 PF02801 Beta-ketoacyl synthase, C-terminal domain CA604_RS02495 PF13180 PDZ domain CA604_RS02500 PF00679 Elongation factor G C-terminus CA604_RS02500 PF00009 Elongation factor Tu GTP binding domain CA604_RS02500 PF03144 Elongation factor Tu domain 2 CA604_RS02500 PF06421 GTP-binding protein LepA C-terminus CA604_RS02505 PF10502 Signal peptidase, peptidase S26 CA604_RS02510 PF00035 Double-stranded RNA binding motif CA604_RS02510 PF14622 Ribonuclease-III-like CA604_RS02515 PF01926 50S ribosome-binding GTPase CA604_RS02515 PF07650 KH domain CA604_RS02520 PF11967 Recombination protein O N terminal CA604_RS02520 PF02565 Recombination protein O C terminal CA604_RS02525 PF01027 Inhibitor of apoptosis-promoting Bax1 CA604_RS02535 PF02789 Cytosol aminopeptidase family, N-terminal domain CA604_RS02535 PF00883 Cytosol aminopeptidase family, catalytic domain CA604_RS02545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CA604_RS02545 PF03466 LysR substrate binding domain CA604_RS02550 PF13977 BetI-type transcriptional repressor, C-terminal CA604_RS02550 PF00440 Bacterial regulatory proteins, tetR family CA604_RS02560 PF00877 NlpC/P60 family CA604_RS02570 PF00557 Metallopeptidase family M24 CA604_RS02570 PF01321 Creatinase/Prolidase N-terminal domain CA604_RS02580 PF00471 Ribosomal protein L33 CA604_RS02585 PF00830 Ribosomal L28 family CA604_RS02590 PF01554 MatE CA604_RS02600 PF01197 Ribosomal protein L31 CA604_RS02605 PF04002 RadC-like JAB domain CA604_RS02610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CA604_RS02615 PF02401 LytB protein CA604_RS02620 PF02545 Maf-like protein CA604_RS02625 PF02590 Predicted SPOUT methyltransferase CA604_RS02635 PF01467 Cytidylyltransferase-like CA604_RS02640 PF02844 Phosphoribosylglycinamide synthetase, N domain CA604_RS02640 PF02843 Phosphoribosylglycinamide synthetase, C domain CA604_RS02640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CA604_RS02645 PF01709 Transcriptional regulator CA604_RS02650 PF05872 Bacterial protein of unknown function (DUF853) CA604_RS02655 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CA604_RS02660 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CA604_RS02660 PF11940 Domain of unknown function (DUF3458) Ig-like fold CA604_RS02660 PF01433 Peptidase family M1 domain CA604_RS02665 PF01523 Putative modulator of DNA gyrase CA604_RS02675 PF08328 Adenylosuccinate lyase C-terminal CA604_RS02675 PF00206 Lyase CA604_RS02680 PF01322 Cytochrome C' CA604_RS02700 PF01645 Conserved region in glutamate synthase CA604_RS02710 PF00545 ribonuclease CA604_RS02725 PF12848 ABC transporter CA604_RS02725 PF00005 ABC transporter CA604_RS02725 PF16326 ABC transporter C-terminal domain CA604_RS02730 PF13406 Transglycosylase SLT domain CA604_RS02735 PF00595 PDZ domain CA604_RS02735 PF03572 Peptidase family S41 CA604_RS02735 PF17804 Tail specific protease N-terminal domain CA604_RS02735 PF11818 C-terminal domain of tail specific protease (DUF3340) CA604_RS02760 PF00691 OmpA family CA604_RS02765 PF00521 DNA gyrase/topoisomerase IV, subunit A CA604_RS02765 PF03989 DNA gyrase C-terminal domain, beta-propeller CA604_RS02770 PF00266 Aminotransferase class-V CA604_RS02775 PF00800 Prephenate dehydratase CA604_RS02775 PF01842 ACT domain CA604_RS02775 PF01817 Chorismate mutase type II CA604_RS02780 PF02153 Prephenate dehydrogenase CA604_RS02780 PF01842 ACT domain CA604_RS02785 PF02224 Cytidylate kinase CA604_RS02790 PF00575 S1 RNA binding domain CA604_RS02795 PF00216 Bacterial DNA-binding protein CA604_RS02805 PF18073 Rubredoxin metal binding domain CA604_RS02810 PF00294 pfkB family carbohydrate kinase CA604_RS02815 PF10531 SLBB domain CA604_RS02820 PF00403 Heavy-metal-associated domain CA604_RS02830 PF00115 Cytochrome C and Quinol oxidase polypeptide I CA604_RS02845 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CA604_RS02845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CA604_RS02850 PF13746 4Fe-4S dicluster domain CA604_RS02850 PF12801 4Fe-4S binding domain CA604_RS02850 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CA604_RS02860 PF00027 Cyclic nucleotide-binding domain CA604_RS02860 PF13545 Crp-like helix-turn-helix domain CA604_RS02870 PF01430 Hsp33 protein CA604_RS02880 PF16177 Acetyl-coenzyme A synthetase N-terminus CA604_RS02880 PF13193 AMP-binding enzyme C-terminal domain CA604_RS02880 PF00501 AMP-binding enzyme CA604_RS02890 PF02926 THUMP domain CA604_RS02890 PF01170 Putative RNA methylase family UPF0020 CA604_RS02895 PF03653 Uncharacterised protein family (UPF0093) CA604_RS02910 PF09334 tRNA synthetases class I (M) CA604_RS02910 PF08264 Anticodon-binding domain of tRNA CA604_RS02910 PF00133 tRNA synthetases class I (I, L, M and V) CA604_RS02910 PF13603 Leucyl-tRNA synthetase, Domain 2 CA604_RS02915 PF01546 Peptidase family M20/M25/M40 CA604_RS02915 PF07687 Peptidase dimerisation domain CA604_RS02920 PF08007 Cupin superfamily protein CA604_RS02925 PF00488 MutS domain V CA604_RS02925 PF05188 MutS domain II CA604_RS02925 PF05190 MutS family domain IV CA604_RS02925 PF01624 MutS domain I CA604_RS02925 PF05192 MutS domain III CA604_RS02930 PF00924 Mechanosensitive ion channel CA604_RS02930 PF05552 Conserved TM helix CA604_RS02935 PF00588 SpoU rRNA Methylase family CA604_RS02940 PF00459 Inositol monophosphatase family CA604_RS02945 PF02673 Bacitracin resistance protein BacA CA604_RS02950 PF00149 Calcineurin-like phosphoesterase CA604_RS02955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CA604_RS02965 PF01406 tRNA synthetases class I (C) catalytic domain CA604_RS02965 PF09190 DALR domain CA604_RS02970 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CA604_RS02975 PF01171 PP-loop family CA604_RS02975 PF09179 TilS substrate binding domain CA604_RS02990 PF16868 NMT1-like family CA604_RS03010 PF06472 ABC transporter transmembrane region 2 CA604_RS03010 PF00005 ABC transporter CA604_RS03015 PF00593 TonB dependent receptor CA604_RS03015 PF07715 TonB-dependent Receptor Plug Domain CA604_RS03020 PF13840 ACT domain CA604_RS03020 PF00696 Amino acid kinase family CA604_RS03020 PF01842 ACT domain CA604_RS03030 PF04461 Protein of unknown function (DUF520) CA604_RS03035 PF09285 Elongation factor P, C-terminal CA604_RS03035 PF01132 Elongation factor P (EF-P) OB domain CA604_RS03035 PF08207 Elongation factor P (EF-P) KOW-like domain CA604_RS03045 PF00155 Aminotransferase class I and II CA604_RS03050 PF11791 Aconitate B N-terminal domain CA604_RS03050 PF06434 Aconitate hydratase 2 N-terminus CA604_RS03050 PF00330 Aconitase family (aconitate hydratase) CA604_RS03065 PF00579 tRNA synthetases class I (W and Y) CA604_RS03070 PF01427 D-ala-D-ala dipeptidase CA604_RS03075 PF01569 PAP2 superfamily CA604_RS03085 PF01964 Radical SAM ThiC family CA604_RS03085 PF13667 ThiC-associated domain CA604_RS03095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CA604_RS03095 PF07498 Rho termination factor, N-terminal domain CA604_RS03095 PF07497 Rho termination factor, RNA-binding domain CA604_RS03100 PF00085 Thioredoxin CA604_RS03105 PF00204 DNA gyrase B CA604_RS03105 PF01751 Toprim domain CA604_RS03105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS03105 PF00986 DNA gyrase B subunit, carboxyl terminus CA604_RS03110 PF00521 DNA gyrase/topoisomerase IV, subunit A CA604_RS03115 PF00970 Oxidoreductase FAD-binding domain CA604_RS03115 PF00175 Oxidoreductase NAD-binding domain CA604_RS03115 PF00111 2Fe-2S iron-sulfur cluster binding domain CA604_RS03125 PF02272 DHHA1 domain CA604_RS03125 PF01411 tRNA synthetases class II (A) CA604_RS03125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CA604_RS03130 PF01206 Sulfurtransferase TusA CA604_RS03135 PF00886 Ribosomal protein S16 CA604_RS03140 PF01782 RimM N-terminal domain CA604_RS03145 PF01746 tRNA (Guanine-1)-methyltransferase CA604_RS03150 PF01451 Low molecular weight phosphotyrosine protein phosphatase CA604_RS03155 PF02082 Transcriptional regulator CA604_RS03160 PF00266 Aminotransferase class-V CA604_RS03165 PF01592 NifU-like N terminal domain CA604_RS03170 PF01521 Iron-sulphur cluster biosynthesis CA604_RS03175 PF07743 HSCB C-terminal oligomerisation domain CA604_RS03180 PF00012 Hsp70 protein CA604_RS03185 PF00111 2Fe-2S iron-sulfur cluster binding domain CA604_RS03215 PF01336 OB-fold nucleic acid binding domain CA604_RS03215 PF00152 tRNA synthetases class II (D, K and N) CA604_RS03220 PF00472 RF-1 domain CA604_RS03220 PF03462 PCRF domain CA604_RS03225 PF01368 DHH family CA604_RS03225 PF17768 RecJ OB domain CA604_RS03225 PF02272 DHHA1 domain CA604_RS03235 PF02687 FtsX-like permease family CA604_RS03235 PF12704 MacB-like periplasmic core domain CA604_RS03240 PF00005 ABC transporter CA604_RS03245 PF01494 FAD binding domain CA604_RS03250 PF01026 TatD related DNase CA604_RS03255 PF00753 Metallo-beta-lactamase superfamily CA604_RS03255 PF03772 Competence protein CA604_RS03260 PF02811 PHP domain CA604_RS03265 PF01272 Transcription elongation factor, GreA/GreB, C-term CA604_RS03265 PF03449 Transcription elongation factor, N-terminal CA604_RS03270 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CA604_RS03275 PF13145 PPIC-type PPIASE domain CA604_RS03280 PF01632 Ribosomal protein L35 CA604_RS03285 PF00453 Ribosomal protein L20 CA604_RS03290 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CA604_RS03290 PF01409 tRNA synthetases class II core domain (F) CA604_RS03295 PF03484 tRNA synthetase B5 domain CA604_RS03295 PF03483 B3/4 domain CA604_RS03295 PF03147 Ferredoxin-fold anticodon binding domain CA604_RS03295 PF01588 Putative tRNA binding domain CA604_RS03295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CA604_RS03300 PF00216 Bacterial DNA-binding protein CA604_RS03310 PF01177 Asp/Glu/Hydantoin racemase CA604_RS03315 PF01070 FMN-dependent dehydrogenase CA604_RS03320 PF00291 Pyridoxal-phosphate dependent enzyme CA604_RS03330 PF13361 UvrD-like helicase C-terminal domain CA604_RS03330 PF00580 UvrD/REP helicase N-terminal domain CA604_RS03330 PF12462 DNA helicase IV / RNA helicase N terminal CA604_RS03335 PF09424 Yqey-like protein CA604_RS03345 PF00768 D-alanyl-D-alanine carboxypeptidase CA604_RS03350 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CA604_RS03350 PF02769 AIR synthase related protein, C-terminal domain CA604_RS03350 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CA604_RS03355 PF00571 CBS domain CA604_RS03355 PF00478 IMP dehydrogenase / GMP reductase domain CA604_RS03365 PF00117 Glutamine amidotransferase class-I CA604_RS03365 PF00958 GMP synthase C terminal domain CA604_RS03365 PF02540 NAD synthase CA604_RS03400 PF00474 Sodium:solute symporter family CA604_RS03410 PF03806 AbgT putative transporter family CA604_RS03415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CA604_RS03425 PF07690 Major Facilitator Superfamily CA604_RS03435 PF00005 ABC transporter CA604_RS03435 PF12857 TOBE-like domain CA604_RS03460 PF04575 Protein of unknown function (DUF560) CA604_RS03465 PF00005 ABC transporter CA604_RS03465 PF00664 ABC transporter transmembrane region CA604_RS03470 PF00664 ABC transporter transmembrane region CA604_RS03470 PF00005 ABC transporter CA604_RS03475 PF03616 Sodium/glutamate symporter CA604_RS03490 PF01515 Phosphate acetyl/butaryl transferase CA604_RS03490 PF03949 Malic enzyme, NAD binding domain CA604_RS03490 PF00390 Malic enzyme, N-terminal domain CA604_RS03495 PF16078 2-oxoglutarate dehydrogenase N-terminus CA604_RS03495 PF00676 Dehydrogenase E1 component CA604_RS03495 PF16870 2-oxoglutarate dehydrogenase C-terminal CA604_RS03495 PF02779 Transketolase, pyrimidine binding domain CA604_RS03500 PF00364 Biotin-requiring enzyme CA604_RS03500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CA604_RS03500 PF02817 e3 binding domain CA604_RS03505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CA604_RS03505 PF07992 Pyridine nucleotide-disulphide oxidoreductase CA604_RS03510 PF03969 AFG1-like ATPase CA604_RS03515 PF01078 Magnesium chelatase, subunit ChlI CA604_RS03515 PF13335 Magnesium chelatase, subunit ChlI C-terminal CA604_RS03520 PF03180 NLPA lipoprotein CA604_RS03530 PF13291 ACT domain CA604_RS03530 PF04607 Region found in RelA / SpoT proteins CA604_RS03530 PF02824 TGS domain CA604_RS03535 PF01192 RNA polymerase Rpb6 CA604_RS03540 PF00625 Guanylate kinase CA604_RS03545 PF13638 PIN domain CA604_RS03545 PF02562 PhoH-like protein CA604_RS03550 PF00578 AhpC/TSA family CA604_RS03555 PF04430 Protein of unknown function (DUF498/DUF598) CA604_RS03560 PF00742 Homoserine dehydrogenase CA604_RS03560 PF03447 Homoserine dehydrogenase, NAD binding domain CA604_RS03560 PF01842 ACT domain CA604_RS03565 PF00291 Pyridoxal-phosphate dependent enzyme CA604_RS03565 PF14821 Threonine synthase N terminus CA604_RS03575 PF01168 Alanine racemase, N-terminal domain CA604_RS03575 PF00842 Alanine racemase, C-terminal domain CA604_RS03580 PF18073 Rubredoxin metal binding domain CA604_RS03585 PF13416 Bacterial extracellular solute-binding protein CA604_RS03590 PF08402 TOBE domain CA604_RS03590 PF00005 ABC transporter CA604_RS03595 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS03600 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS03605 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CA604_RS03610 PF01895 PhoU domain CA604_RS03615 PF04362 Bacterial Fe(2+) trafficking CA604_RS03620 PF11898 Domain of unknown function (DUF3418) CA604_RS03620 PF00270 DEAD/DEAH box helicase CA604_RS03620 PF00271 Helicase conserved C-terminal domain CA604_RS03620 PF04408 Helicase associated domain (HA2) CA604_RS03620 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CA604_RS03625 PF07733 Bacterial DNA polymerase III alpha NTPase domain CA604_RS03625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CA604_RS03625 PF14579 Helix-hairpin-helix motif CA604_RS03625 PF02811 PHP domain CA604_RS03625 PF01336 OB-fold nucleic acid binding domain CA604_RS03635 PF00005 ABC transporter CA604_RS03635 PF00664 ABC transporter transmembrane region CA604_RS03640 PF10150 Ribonuclease E/G family CA604_RS03640 PF00575 S1 RNA binding domain CA604_RS03645 PF01227 GTP cyclohydrolase I CA604_RS03675 PF00565 Staphylococcal nuclease homologue CA604_RS03680 PF00881 Nitroreductase family CA604_RS03685 PF03544 Gram-negative bacterial TonB protein C-terminal CA604_RS03690 PF01618 MotA/TolQ/ExbB proton channel family CA604_RS03695 PF02472 Biopolymer transport protein ExbD/TolR CA604_RS03705 PF04305 Protein of unknown function (DUF455) CA604_RS03710 PF00005 ABC transporter CA604_RS03710 PF06472 ABC transporter transmembrane region 2 CA604_RS03715 PF13673 Acetyltransferase (GNAT) domain CA604_RS03725 PF01925 Sulfite exporter TauE/SafE CA604_RS03730 PF00773 RNB domain CA604_RS03730 PF08461 Ribonuclease R winged-helix domain CA604_RS03730 PF17876 Cold shock domain CA604_RS03730 PF00575 S1 RNA binding domain CA604_RS03730 PF08206 Ribonuclease B OB domain CA604_RS03735 PF00588 SpoU rRNA Methylase family CA604_RS03735 PF08032 RNA 2'-O ribose methyltransferase substrate binding CA604_RS03740 PF01053 Cys/Met metabolism PLP-dependent enzyme CA604_RS03745 PF00216 Bacterial DNA-binding protein CA604_RS03750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CA604_RS03755 PF00005 ABC transporter CA604_RS03765 PF02321 Outer membrane efflux protein CA604_RS03775 PF00764 Arginosuccinate synthase CA604_RS03780 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CA604_RS03780 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CA604_RS03790 PF01649 Ribosomal protein S20 CA604_RS03795 PF03023 Lipid II flippase MurJ CA604_RS03800 PF05191 Adenylate kinase, active site lid CA604_RS03805 PF02348 Cytidylyltransferase CA604_RS03810 PF03966 Trm112p-like protein CA604_RS03815 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CA604_RS03820 PF13742 OB-fold nucleic acid binding domain CA604_RS03820 PF02601 Exonuclease VII, large subunit CA604_RS03825 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CA604_RS03825 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CA604_RS03830 PF13458 Periplasmic binding protein CA604_RS03835 PF14748 Pyrroline-5-carboxylate reductase dimerisation CA604_RS03835 PF03807 NADP oxidoreductase coenzyme F420-dependent CA604_RS03840 PF02653 Branched-chain amino acid transport system / permease component CA604_RS03845 PF02653 Branched-chain amino acid transport system / permease component CA604_RS03845 PF11862 Domain of unknown function (DUF3382) CA604_RS03850 PF00005 ABC transporter CA604_RS03850 PF12399 Branched-chain amino acid ATP-binding cassette transporter CA604_RS03855 PF00005 ABC transporter CA604_RS03860 PF02630 SCO1/SenC CA604_RS03865 PF01432 Peptidase family M3 CA604_RS03870 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CA604_RS03870 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CA604_RS03875 PF00196 Bacterial regulatory proteins, luxR family CA604_RS03875 PF00072 Response regulator receiver domain CA604_RS03880 PF00512 His Kinase A (phospho-acceptor) domain CA604_RS03880 PF00989 PAS fold CA604_RS03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS03885 PF00456 Transketolase, thiamine diphosphate binding domain CA604_RS03885 PF17831 Pyruvate dehydrogenase E1 component middle domain CA604_RS03890 PF00364 Biotin-requiring enzyme CA604_RS03890 PF02817 e3 binding domain CA604_RS03890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CA604_RS03895 PF07992 Pyridine nucleotide-disulphide oxidoreductase CA604_RS03895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CA604_RS03900 PF01292 Prokaryotic cytochrome b561 CA604_RS03905 PF08245 Mur ligase middle domain CA604_RS03905 PF02875 Mur ligase family, glutamate ligase domain CA604_RS03915 PF02674 Colicin V production protein CA604_RS03920 PF00156 Phosphoribosyl transferase domain CA604_RS03925 PF02423 Ornithine cyclodeaminase/mu-crystallin family CA604_RS03935 PF01914 MarC family integral membrane protein CA604_RS03940 PF01966 HD domain CA604_RS03940 PF01909 Nucleotidyltransferase domain CA604_RS03940 PF08335 GlnD PII-uridylyltransferase CA604_RS03945 PF00557 Metallopeptidase family M24 CA604_RS03950 PF00318 Ribosomal protein S2 CA604_RS03955 PF00889 Elongation factor TS CA604_RS03960 PF00696 Amino acid kinase family CA604_RS03965 PF01765 Ribosome recycling factor CA604_RS03970 PF01255 Putative undecaprenyl diphosphate synthase CA604_RS03980 PF13288 DXP reductoisomerase C-terminal domain CA604_RS03980 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CA604_RS03980 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CA604_RS03985 PF17820 PDZ domain CA604_RS03985 PF02163 Peptidase family M50 CA604_RS03990 PF01103 Surface antigen CA604_RS03990 PF07244 Surface antigen variable number repeat CA604_RS03995 PF03938 Outer membrane protein (OmpH-like) CA604_RS04000 PF00132 Bacterial transferase hexapeptide (six repeats) CA604_RS04000 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CA604_RS04000 PF14602 Hexapeptide repeat of succinyl-transferase CA604_RS04005 PF07977 FabA-like domain CA604_RS04010 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CA604_RS04010 PF00132 Bacterial transferase hexapeptide (six repeats) CA604_RS04015 PF02684 Lipid-A-disaccharide synthetase CA604_RS04020 PF01351 Ribonuclease HII CA604_RS04030 PF00588 SpoU rRNA Methylase family CA604_RS04030 PF08032 RNA 2'-O ribose methyltransferase substrate binding CA604_RS04035 PF03618 Kinase/pyrophosphorylase CA604_RS04040 PF00391 PEP-utilising enzyme, mobile domain CA604_RS04040 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CA604_RS04040 PF02896 PEP-utilising enzyme, TIM barrel domain CA604_RS04050 PF01145 SPFH domain / Band 7 family CA604_RS04055 PF01668 SmpB protein CA604_RS04060 PF03364 Polyketide cyclase / dehydrase and lipid transport CA604_RS04065 PF03658 RnfH family Ubiquitin CA604_RS04070 PF01571 Aminomethyltransferase folate-binding domain CA604_RS04075 PF02618 YceG-like family CA604_RS04080 PF02223 Thymidylate kinase CA604_RS04085 PF09115 DNA polymerase III, delta subunit, C terminal CA604_RS04090 PF01026 TatD related DNase CA604_RS04100 PF03334 Na+/H+ antiporter subunit CA604_RS04105 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CA604_RS04110 PF01899 Na+/H+ ion antiporter subunit CA604_RS04115 PF00361 Proton-conducting membrane transporter CA604_RS04120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CA604_RS04125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CA604_RS04125 PF00361 Proton-conducting membrane transporter CA604_RS04125 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CA604_RS04125 PF13244 Domain of unknown function (DUF4040) CA604_RS04135 PF00529 HlyD membrane-fusion protein of T1SS CA604_RS04135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CA604_RS04140 PF00873 AcrB/AcrD/AcrF family CA604_RS04145 PF02321 Outer membrane efflux protein CA604_RS04150 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CA604_RS04155 PF00881 Nitroreductase family CA604_RS04160 PF00171 Aldehyde dehydrogenase family CA604_RS04170 PF00873 AcrB/AcrD/AcrF family CA604_RS04175 PF00873 AcrB/AcrD/AcrF family CA604_RS04180 PF13533 Biotin-lipoyl like CA604_RS04185 PF00892 EamA-like transporter family CA604_RS04195 PF03401 Tripartite tricarboxylate transporter family receptor CA604_RS04205 PF03372 Endonuclease/Exonuclease/phosphatase family CA604_RS04215 PF01479 S4 domain CA604_RS04215 PF00849 RNA pseudouridylate synthase CA604_RS04220 PF00543 Nitrogen regulatory protein P-II CA604_RS04225 PF02540 NAD synthase CA604_RS04225 PF00795 Carbon-nitrogen hydrolase CA604_RS04230 PF14698 Argininosuccinate lyase C-terminal CA604_RS04230 PF00206 Lyase CA604_RS04235 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CA604_RS04240 PF02631 RecX family CA604_RS04245 PF00154 recA bacterial DNA recombination protein CA604_RS04250 PF04381 Putative exonuclease, RdgC CA604_RS04260 PF00271 Helicase conserved C-terminal domain CA604_RS04260 PF04851 Type III restriction enzyme, res subunit CA604_RS04260 PF02151 UvrB/uvrC motif CA604_RS04260 PF12344 Ultra-violet resistance protein B CA604_RS04260 PF17757 UvrB interaction domain CA604_RS04265 PF00155 Aminotransferase class I and II CA604_RS04270 PF01726 LexA DNA binding domain CA604_RS04270 PF00717 Peptidase S24-like CA604_RS04280 PF16868 NMT1-like family CA604_RS04290 PF01594 AI-2E family transporter CA604_RS04315 PF00132 Bacterial transferase hexapeptide (six repeats) CA604_RS04315 PF14602 Hexapeptide repeat of succinyl-transferase CA604_RS04315 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CA604_RS04320 PF07687 Peptidase dimerisation domain CA604_RS04320 PF01546 Peptidase family M20/M25/M40 CA604_RS04325 PF05175 Methyltransferase small domain CA604_RS04330 PF12848 ABC transporter CA604_RS04330 PF00005 ABC transporter CA604_RS04335 PF00005 ABC transporter CA604_RS04340 PF02653 Branched-chain amino acid transport system / permease component CA604_RS04350 PF01416 tRNA pseudouridine synthase CA604_RS04355 PF01118 Semialdehyde dehydrogenase, NAD binding domain CA604_RS04355 PF02774 Semialdehyde dehydrogenase, dimerisation domain CA604_RS04360 PF00180 Isocitrate/isopropylmalate dehydrogenase CA604_RS04365 PF00694 Aconitase C-terminal domain CA604_RS04370 PF00330 Aconitase family (aconitate hydratase) CA604_RS04380 PF03631 Virulence factor BrkB CA604_RS04385 PF00111 2Fe-2S iron-sulfur cluster binding domain CA604_RS04390 PF00268 Ribonucleotide reductase, small chain CA604_RS04395 PF00317 Ribonucleotide reductase, all-alpha domain CA604_RS04395 PF02867 Ribonucleotide reductase, barrel domain CA604_RS04395 PF03477 ATP cone domain CA604_RS04400 PF01207 Dihydrouridine synthase (Dus) CA604_RS04405 PF00654 Voltage gated chloride channel CA604_RS04410 PF01636 Phosphotransferase enzyme family CA604_RS04420 PF01012 Electron transfer flavoprotein domain CA604_RS04420 PF00766 Electron transfer flavoprotein FAD-binding domain CA604_RS04425 PF01012 Electron transfer flavoprotein domain CA604_RS04430 PF01066 CDP-alcohol phosphatidyltransferase CA604_RS04435 PF01541 GIY-YIG catalytic domain CA604_RS04435 PF02151 UvrB/uvrC motif CA604_RS04435 PF08459 UvrC Helix-hairpin-helix N-terminal CA604_RS04440 PF00933 Glycosyl hydrolase family 3 N terminal domain CA604_RS04445 PF01648 4'-phosphopantetheinyl transferase superfamily CA604_RS04450 PF00929 Exonuclease CA604_RS04455 PF03193 RsgA GTPase CA604_RS04460 PF01245 Ribosomal protein L19 CA604_RS04480 PF00437 Type II/IV secretion system protein CA604_RS04485 PF04972 BON domain CA604_RS04485 PF00263 Bacterial type II and III secretion system protein CA604_RS04485 PF13629 Pilus formation protein N terminal region CA604_RS04515 PF03167 Uracil DNA glycosylase superfamily CA604_RS04525 PF00589 Phage integrase family CA604_RS04525 PF13356 Arm DNA-binding domain CA604_RS04525 PF14659 Phage integrase, N-terminal SAM-like domain CA604_RS04565 PF04542 Sigma-70 region 2 CA604_RS04565 PF00140 Sigma-70 factor, region 1.2 CA604_RS04565 PF03979 Sigma-70 factor, region 1.1 CA604_RS04565 PF04546 Sigma-70, non-essential region CA604_RS04565 PF04545 Sigma-70, region 4 CA604_RS04565 PF04539 Sigma-70 region 3 CA604_RS04570 PF08275 DNA primase catalytic core, N-terminal domain CA604_RS04570 PF10410 DnaB-helicase binding domain of primase CA604_RS04570 PF08278 DNA primase DnaG DnaB-binding CA604_RS04570 PF01807 CHC2 zinc finger CA604_RS04575 PF01165 Ribosomal protein S21 CA604_RS04580 PF00156 Phosphoribosyl transferase domain CA604_RS04585 PF00709 Adenylosuccinate synthetase CA604_RS04590 PF01145 SPFH domain / Band 7 family CA604_RS04595 PF01145 SPFH domain / Band 7 family CA604_RS04600 PF16360 GTP-binding GTPase Middle Region CA604_RS04600 PF01926 50S ribosome-binding GTPase CA604_RS04600 PF13167 GTP-binding GTPase N-terminal CA604_RS04605 PF17209 Hfq protein CA604_RS04610 PF01926 50S ribosome-binding GTPase CA604_RS04610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CA604_RS04615 PF13360 PQQ-like domain CA604_RS04620 PF09976 Tetratricopeptide repeat-like domain CA604_RS04625 PF13393 Histidyl-tRNA synthetase CA604_RS04625 PF03129 Anticodon binding domain CA604_RS04630 PF04551 GcpE protein CA604_RS04640 PF04055 Radical SAM superfamily CA604_RS04645 PF00334 Nucleoside diphosphate kinase CA604_RS04650 PF08264 Anticodon-binding domain of tRNA CA604_RS04650 PF00133 tRNA synthetases class I (I, L, M and V) CA604_RS04650 PF10458 Valyl tRNA synthetase tRNA binding arm CA604_RS04660 PF00719 Inorganic pyrophosphatase CA604_RS04680 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CA604_RS04680 PF03900 Porphobilinogen deaminase, C-terminal domain CA604_RS04685 PF03741 Integral membrane protein TerC family CA604_RS04690 PF02629 CoA binding domain CA604_RS04690 PF00549 CoA-ligase CA604_RS04695 PF08442 ATP-grasp domain CA604_RS04695 PF00549 CoA-ligase CA604_RS04715 PF05958 tRNA (Uracil-5-)-methyltransferase CA604_RS04725 PF01476 LysM domain CA604_RS04725 PF01551 Peptidase family M23 CA604_RS04735 PF01975 Survival protein SurE CA604_RS04740 PF02660 Glycerol-3-phosphate acyltransferase CA604_RS04745 PF00814 Glycoprotease family CA604_RS04750 PF00860 Permease family CA604_RS04755 PF01205 Uncharacterized protein family UPF0029 CA604_RS04760 PF00005 ABC transporter CA604_RS04760 PF12848 ABC transporter CA604_RS04765 PF02016 LD-carboxypeptidase N-terminal domain CA604_RS04765 PF17676 LD-carboxypeptidase C-terminal domain CA604_RS04770 PF14437 MafB19-like deaminase CA604_RS04775 PF00145 C-5 cytosine-specific DNA methylase CA604_RS04785 PF00145 C-5 cytosine-specific DNA methylase CA604_RS04790 PF05726 Pirin C-terminal cupin domain CA604_RS04790 PF02678 Pirin CA604_RS04800 PF00593 TonB dependent receptor CA604_RS04800 PF07715 TonB-dependent Receptor Plug Domain CA604_RS04805 PF00842 Alanine racemase, C-terminal domain CA604_RS04805 PF01168 Alanine racemase, N-terminal domain CA604_RS04840 PF02492 CobW/HypB/UreG, nucleotide-binding domain CA604_RS04840 PF07683 Cobalamin synthesis protein cobW C-terminal domain CA604_RS04850 PF01522 Polysaccharide deacetylase CA604_RS04855 PF08402 TOBE domain CA604_RS04855 PF00005 ABC transporter CA604_RS04865 PF01547 Bacterial extracellular solute-binding protein CA604_RS04885 PF00285 Citrate synthase, C-terminal domain CA604_RS04890 PF03937 Flavinator of succinate dehydrogenase CA604_RS04895 PF13085 2Fe-2S iron-sulfur cluster binding domain CA604_RS04900 PF00890 FAD binding domain CA604_RS04900 PF02910 Fumarate reductase flavoprotein C-term CA604_RS04910 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CA604_RS04915 PF00056 lactate/malate dehydrogenase, NAD binding domain CA604_RS04915 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CA604_RS04920 PF00171 Aldehyde dehydrogenase family CA604_RS04950 PF05593 RHS Repeat CA604_RS04950 PF03527 RHS protein CA604_RS04960 PF05593 RHS Repeat CA604_RS04960 PF03527 RHS protein CA604_RS04970 PF03527 RHS protein CA604_RS04970 PF05593 RHS Repeat CA604_RS04980 PF05593 RHS Repeat CA604_RS04980 PF03527 RHS protein CA604_RS05000 PF06715 Gp5 C-terminal repeat (3 copies) CA604_RS05000 PF04717 Type VI secretion system, phage-baseplate injector CA604_RS05015 PF04717 Type VI secretion system, phage-baseplate injector CA604_RS05025 PF04717 Type VI secretion system, phage-baseplate injector CA604_RS05035 PF04380 Membrane fusogenic activity CA604_RS05040 PF02861 Clp amino terminal domain, pathogenicity island component CA604_RS05040 PF17871 AAA lid domain CA604_RS05040 PF07724 AAA domain (Cdc48 subfamily) CA604_RS05040 PF10431 C-terminal, D2-small domain, of ClpB protein CA604_RS05040 PF00004 ATPase family associated with various cellular activities (AAA) CA604_RS05050 PF04977 Septum formation initiator CA604_RS05055 PF03952 Enolase, N-terminal domain CA604_RS05055 PF00113 Enolase, C-terminal TIM barrel domain CA604_RS05060 PF00793 DAHP synthetase I family CA604_RS05065 PF00117 Glutamine amidotransferase class-I CA604_RS05065 PF06418 CTP synthase N-terminus CA604_RS05075 PF03466 LysR substrate binding domain CA604_RS05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CA604_RS05080 PF01266 FAD dependent oxidoreductase CA604_RS05085 PF03553 Na+/H+ antiporter family CA604_RS05090 PF00171 Aldehyde dehydrogenase family CA604_RS05095 PF02423 Ornithine cyclodeaminase/mu-crystallin family CA604_RS05100 PF00375 Sodium:dicarboxylate symporter family CA604_RS05105 PF00202 Aminotransferase class-III CA604_RS05110 PF07063 Domain of unknown function (DUF1338) CA604_RS05145 PF04325 Protein of unknown function (DUF465) CA604_RS05155 PF07715 TonB-dependent Receptor Plug Domain CA604_RS05155 PF00593 TonB dependent receptor CA604_RS05165 PF10615 Protein of unknown function (DUF2470) CA604_RS05165 PF01243 Pyridoxamine 5'-phosphate oxidase CA604_RS05180 PF00009 Elongation factor Tu GTP binding domain CA604_RS05180 PF03144 Elongation factor Tu domain 2 CA604_RS05180 PF00679 Elongation factor G C-terminus CA604_RS05185 PF01509 TruB family pseudouridylate synthase (N terminal domain) CA604_RS05185 PF16198 tRNA pseudouridylate synthase B C-terminal domain CA604_RS05190 PF02033 Ribosome-binding factor A CA604_RS05195 PF04760 Translation initiation factor IF-2, N-terminal region CA604_RS05195 PF08364 Bacterial translation initiation factor IF-2 associated region CA604_RS05195 PF00009 Elongation factor Tu GTP binding domain CA604_RS05195 PF11987 Translation-initiation factor 2 CA604_RS05200 PF13184 NusA-like KH domain CA604_RS05200 PF08529 NusA N-terminal domain CA604_RS05205 PF17384 RimP C-terminal SH3 domain CA604_RS05205 PF02576 RimP N-terminal domain CA604_RS05210 PF00849 RNA pseudouridylate synthase CA604_RS05210 PF01479 S4 domain CA604_RS05215 PF04079 Segregation and condensation complex subunit ScpB CA604_RS05225 PF01479 S4 domain CA604_RS05225 PF00849 RNA pseudouridylate synthase CA604_RS05230 PF13525 Outer membrane lipoprotein CA604_RS05235 PF11799 impB/mucB/samB family C-terminal domain CA604_RS05235 PF00817 impB/mucB/samB family CA604_RS05235 PF13438 Domain of unknown function (DUF4113) CA604_RS05235 PF11798 IMS family HHH motif CA604_RS05240 PF00717 Peptidase S24-like CA604_RS05245 PF13361 UvrD-like helicase C-terminal domain CA604_RS05245 PF00580 UvrD/REP helicase N-terminal domain CA604_RS05250 PF01029 NusB family CA604_RS05250 PF01189 16S rRNA methyltransferase RsmB/F CA604_RS05255 PF00551 Formyl transferase CA604_RS05260 PF06574 FAD synthetase CA604_RS05260 PF01687 Riboflavin kinase CA604_RS05265 PF06827 Zinc finger found in FPG and IleRS CA604_RS05265 PF00133 tRNA synthetases class I (I, L, M and V) CA604_RS05265 PF08264 Anticodon-binding domain of tRNA CA604_RS05270 PF01252 Signal peptidase (SPase) II CA604_RS05275 PF02441 Flavoprotein CA604_RS05275 PF04127 DNA / pantothenate metabolism flavoprotein CA604_RS05280 PF09335 SNARE associated Golgi protein CA604_RS05285 PF00692 dUTPase CA604_RS05290 PF00593 TonB dependent receptor CA604_RS05290 PF07715 TonB-dependent Receptor Plug Domain CA604_RS05295 PF17484 N-Lobe handle Tf-binding protein B CA604_RS05295 PF17483 C-lobe handle domain of Tf-binding protein B CA604_RS05295 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B CA604_RS05305 PF17871 AAA lid domain CA604_RS05305 PF10431 C-terminal, D2-small domain, of ClpB protein CA604_RS05305 PF00004 ATPase family associated with various cellular activities (AAA) CA604_RS05305 PF02861 Clp amino terminal domain, pathogenicity island component CA604_RS05305 PF07724 AAA domain (Cdc48 subfamily) CA604_RS05310 PF00313 'Cold-shock' DNA-binding domain CA604_RS05320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CA604_RS05320 PF03466 LysR substrate binding domain CA604_RS05325 PF00270 DEAD/DEAH box helicase CA604_RS05325 PF00271 Helicase conserved C-terminal domain CA604_RS05325 PF17191 RecG wedge domain CA604_RS05330 PF01042 Endoribonuclease L-PSP CA604_RS05335 PF13416 Bacterial extracellular solute-binding protein CA604_RS05340 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS05345 PF00005 ABC transporter CA604_RS05345 PF08402 TOBE domain CA604_RS05360 PF03951 Glutamine synthetase, beta-Grasp domain CA604_RS05360 PF00120 Glutamine synthetase, catalytic domain CA604_RS05365 PF06969 HemN C-terminal domain CA604_RS05365 PF04055 Radical SAM superfamily CA604_RS05370 PF01725 Ham1 family CA604_RS05375 PF01138 3' exoribonuclease family, domain 1 CA604_RS05375 PF03725 3' exoribonuclease family, domain 2 CA604_RS05380 PF03755 YicC-like family, N-terminal region CA604_RS05380 PF08340 Domain of unknown function (DUF1732) CA604_RS05385 PF00772 DnaB-like helicase N terminal domain CA604_RS05385 PF03796 DnaB-like helicase C terminal domain CA604_RS05390 PF03948 Ribosomal protein L9, C-terminal domain CA604_RS05390 PF01281 Ribosomal protein L9, N-terminal domain CA604_RS05395 PF01084 Ribosomal protein S18 CA604_RS05405 PF01250 Ribosomal protein S6 CA604_RS05410 PF02649 Type I GTP cyclohydrolase folE2 CA604_RS05415 PF02780 Transketolase, C-terminal domain CA604_RS05415 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CA604_RS05415 PF02779 Transketolase, pyrimidine binding domain CA604_RS05420 PF00348 Polyprenyl synthetase CA604_RS05425 PF02609 Exonuclease VII small subunit CA604_RS05435 PF01979 Amidohydrolase family CA604_RS05440 PF00221 Aromatic amino acid lyase CA604_RS05445 PF01175 Urocanase Rossmann-like domain CA604_RS05445 PF17392 Urocanase C-terminal domain CA604_RS05445 PF17391 Urocanase N-terminal domain CA604_RS05450 PF07702 UTRA domain CA604_RS05450 PF00392 Bacterial regulatory proteins, gntR family CA604_RS05455 PF00581 Rhodanese-like domain CA604_RS05465 PF01435 Peptidase family M48 CA604_RS05470 PF01367 5'-3' exonuclease, C-terminal SAM fold CA604_RS05470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CA604_RS05470 PF00476 DNA polymerase family A CA604_RS05470 PF01612 3'-5' exonuclease CA604_RS05475 PF03641 Possible lysine decarboxylase CA604_RS05480 PF06827 Zinc finger found in FPG and IleRS CA604_RS05480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CA604_RS05480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CA604_RS05490 PF05524 PEP-utilising enzyme, N-terminal CA604_RS05490 PF00391 PEP-utilising enzyme, mobile domain CA604_RS05490 PF02896 PEP-utilising enzyme, TIM barrel domain CA604_RS05495 PF00381 PTS HPr component phosphorylation site CA604_RS05505 PF05198 Translation initiation factor IF-3, N-terminal domain CA604_RS05505 PF00707 Translation initiation factor IF-3, C-terminal domain CA604_RS05510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CA604_RS05510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CA604_RS05510 PF03129 Anticodon binding domain CA604_RS05510 PF02824 TGS domain CA604_RS05520 PF00004 ATPase family associated with various cellular activities (AAA) CA604_RS05520 PF02190 ATP-dependent protease La (LON) substrate-binding domain CA604_RS05520 PF05362 Lon protease (S16) C-terminal proteolytic domain CA604_RS05525 PF07724 AAA domain (Cdc48 subfamily) CA604_RS05525 PF10431 C-terminal, D2-small domain, of ClpB protein CA604_RS05525 PF06689 ClpX C4-type zinc finger CA604_RS05530 PF00574 Clp protease CA604_RS05535 PF05698 Bacterial trigger factor protein (TF) C-terminus CA604_RS05535 PF05697 Bacterial trigger factor protein (TF) CA604_RS05535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CA604_RS05545 PF08335 GlnD PII-uridylyltransferase CA604_RS05545 PF03710 Glutamate-ammonia ligase adenylyltransferase CA604_RS05550 PF02677 Epoxyqueuosine reductase QueH CA604_RS05575 PF01464 Transglycosylase SLT domain CA604_RS05590 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CA604_RS05680 PF08401 Domain of unknown function (DUF1738) CA604_RS05680 PF18818 Metallopeptidase superfamily domain CA604_RS05680 PF13362 Toprim domain CA604_RS05695 PF04335 VirB8 protein CA604_RS05700 PF03524 Conjugal transfer protein CA604_RS05705 PF03743 Bacterial conjugation TrbI-like protein CA604_RS05725 PF00437 Type II/IV secretion system protein CA604_RS05730 PF02534 Type IV secretory system Conjugative DNA transfer CA604_RS05830 PF13356 Arm DNA-binding domain CA604_RS05830 PF00589 Phage integrase family CA604_RS05845 PF04607 Region found in RelA / SpoT proteins CA604_RS05845 PF02824 TGS domain CA604_RS05845 PF13291 ACT domain CA604_RS05855 PF00701 Dihydrodipicolinate synthetase family CA604_RS05860 PF06804 NlpB/DapX lipoprotein CA604_RS05890 PF02687 FtsX-like permease family CA604_RS05890 PF00005 ABC transporter CA604_RS05890 PF12704 MacB-like periplasmic core domain CA604_RS05900 PF03781 Sulfatase-modifying factor enzyme 1 CA604_RS05920 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CA604_RS05920 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CA604_RS05925 PF07715 TonB-dependent Receptor Plug Domain CA604_RS05925 PF00593 TonB dependent receptor CA604_RS05930 PF00575 S1 RNA binding domain CA604_RS05930 PF03725 3' exoribonuclease family, domain 2 CA604_RS05930 PF00013 KH domain CA604_RS05930 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CA604_RS05930 PF01138 3' exoribonuclease family, domain 1 CA604_RS05935 PF00312 Ribosomal protein S15 CA604_RS05945 PF01235 Sodium:alanine symporter family CA604_RS05950 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CA604_RS05950 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CA604_RS05955 PF10369 Small subunit of acetolactate synthase CA604_RS05960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CA604_RS05960 PF00205 Thiamine pyrophosphate enzyme, central domain CA604_RS05960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CA604_RS05965 PF03883 Peroxide stress protein YaaA CA604_RS05970 PF02403 Seryl-tRNA synthetase N-terminal domain CA604_RS05970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CA604_RS05975 PF12002 MgsA AAA+ ATPase C terminal CA604_RS05975 PF00004 ATPase family associated with various cellular activities (AAA) CA604_RS05975 PF16193 AAA C-terminal domain CA604_RS05980 PF03548 Outer membrane lipoprotein carrier protein LolA CA604_RS05985 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CA604_RS05985 PF09397 Ftsk gamma domain CA604_RS05985 PF01580 FtsK/SpoIIIE family CA604_RS05985 PF17854 FtsK alpha domain CA604_RS05990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CA604_RS06000 PF04284 Protein of unknown function (DUF441) CA604_RS06010 PF03601 Conserved hypothetical protein 698 CA604_RS06020 PF03797 Autotransporter beta-domain CA604_RS06025 PF00684 DnaJ central domain CA604_RS06025 PF01556 DnaJ C terminal domain CA604_RS06025 PF00226 DnaJ domain CA604_RS06030 PF00012 Hsp70 protein CA604_RS06035 PF01025 GrpE CA604_RS06040 PF00132 Bacterial transferase hexapeptide (six repeats) CA604_RS06045 PF00762 Ferrochelatase CA604_RS06050 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CA604_RS06050 PF01628 HrcA protein C terminal domain CA604_RS06055 PF01513 ATP-NAD kinase CA604_RS06060 PF02463 RecF/RecN/SMC N terminal domain CA604_RS06065 PF05173 Dihydrodipicolinate reductase, C-terminus CA604_RS06065 PF01113 Dihydrodipicolinate reductase, N-terminus CA604_RS06070 PF04355 SmpA / OmlA family CA604_RS06075 PF01475 Ferric uptake regulator family CA604_RS06080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CA604_RS06080 PF01565 FAD binding domain CA604_RS06090 PF01545 Cation efflux family CA604_RS06100 PF00145 C-5 cytosine-specific DNA methylase CA604_RS06100 PF01381 Helix-turn-helix CA604_RS06105 PF04261 Dyp-type peroxidase family CA604_RS06115 PF00005 ABC transporter CA604_RS06120 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS06125 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS06130 PF12849 PBP superfamily domain CA604_RS06135 PF02541 Ppx/GppA phosphatase family CA604_RS06145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CA604_RS06145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CA604_RS06145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CA604_RS06145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CA604_RS06150 PF00809 Pterin binding enzyme CA604_RS06155 PF00004 ATPase family associated with various cellular activities (AAA) CA604_RS06155 PF01434 Peptidase family M41 CA604_RS06155 PF06480 FtsH Extracellular CA604_RS06155 PF17862 AAA+ lid domain CA604_RS06160 PF01728 FtsJ-like methyltransferase CA604_RS06165 PF01985 CRS1 / YhbY (CRM) domain CA604_RS06170 PF03449 Transcription elongation factor, N-terminal CA604_RS06170 PF01272 Transcription elongation factor, GreA/GreB, C-term CA604_RS06175 PF00860 Permease family CA604_RS06180 PF00210 Ferritin-like domain CA604_RS06185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CA604_RS06185 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CA604_RS06185 PF02142 MGS-like domain CA604_RS06190 PF00117 Glutamine amidotransferase class-I CA604_RS06190 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CA604_RS06195 PF13662 Toprim domain CA604_RS06195 PF02132 RecR protein CA604_RS06200 PF02575 YbaB/EbfC DNA-binding family CA604_RS06210 PF12169 DNA polymerase III subunits gamma and tau domain III CA604_RS06210 PF12170 DNA polymerase III tau subunit V interacting with alpha CA604_RS06210 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CA604_RS06220 PF13361 UvrD-like helicase C-terminal domain CA604_RS06220 PF00580 UvrD/REP helicase N-terminal domain CA604_RS06220 PF12705 PD-(D/E)XK nuclease superfamily CA604_RS06240 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CA604_RS06275 PF00589 Phage integrase family CA604_RS06275 PF02899 Phage integrase, N-terminal SAM-like domain CA604_RS06280 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CA604_RS06285 PF01520 N-acetylmuramoyl-L-alanine amidase CA604_RS06285 PF11741 AMIN domain CA604_RS06290 PF01119 DNA mismatch repair protein, C-terminal domain CA604_RS06290 PF08676 MutL C terminal dimerisation domain CA604_RS06300 PF00586 AIR synthase related protein, N-terminal domain CA604_RS06300 PF02769 AIR synthase related protein, C-terminal domain CA604_RS06305 PF00308 Bacterial dnaA protein CA604_RS06305 PF08299 Bacterial dnaA protein helix-turn-helix CA604_RS06305 PF11638 DnaA N-terminal domain CA604_RS06310 PF01743 Poly A polymerase head domain CA604_RS06310 PF12627 Probable RNA and SrmB- binding site of polymerase A CA604_RS06310 PF12626 Polymerase A arginine-rich C-terminus CA604_RS06315 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CA604_RS06320 PF00483 Nucleotidyl transferase CA604_RS06325 PF00342 Phosphoglucose isomerase CA604_RS06330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CA604_RS06370 PF01180 Dihydroorotate dehydrogenase CA604_RS06380 PF00270 DEAD/DEAH box helicase CA604_RS06380 PF00271 Helicase conserved C-terminal domain CA604_RS06390 PF01207 Dihydrouridine synthase (Dus) CA604_RS06395 PF02954 Bacterial regulatory protein, Fis family CA604_RS06400 PF01808 AICARFT/IMPCHase bienzyme CA604_RS06400 PF02142 MGS-like domain CA604_RS06405 PF02075 Crossover junction endodeoxyribonuclease RuvC CA604_RS06410 PF07499 RuvA, C-terminal domain CA604_RS06410 PF01330 RuvA N terminal domain CA604_RS06420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CA604_RS06425 PF05496 Holliday junction DNA helicase RuvB P-loop domain CA604_RS06425 PF05491 RuvB C-terminal winged helix domain CA604_RS06425 PF17864 RuvB AAA lid domain CA604_RS06430 PF01266 FAD dependent oxidoreductase CA604_RS06440 PF05690 Thiazole biosynthesis protein ThiG CA604_RS06480 PF01266 FAD dependent oxidoreductase CA604_RS06480 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CA604_RS06485 PF03448 MgtE intracellular N domain CA604_RS06485 PF01769 Divalent cation transporter CA604_RS06485 PF00571 CBS domain CA604_RS06490 PF07516 SecA Wing and Scaffold domain CA604_RS06490 PF01043 SecA preprotein cross-linking domain CA604_RS06490 PF02810 SEC-C motif CA604_RS06490 PF07517 SecA DEAD-like domain CA604_RS06495 PF08525 Opacity-associated protein A N-terminal motif CA604_RS06495 PF01551 Peptidase family M23 CA604_RS06495 PF01476 LysM domain CA604_RS06505 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CA604_RS06510 PF12327 FtsZ family, C-terminal domain CA604_RS06510 PF00091 Tubulin/FtsZ family, GTPase domain CA604_RS06515 PF02491 SHS2 domain inserted in FTSA CA604_RS06520 PF03799 Cell division protein FtsQ CA604_RS06520 PF08478 POTRA domain, FtsQ-type CA604_RS06525 PF01820 D-ala D-ala ligase N-terminus CA604_RS06525 PF07478 D-ala D-ala ligase C-terminus CA604_RS06530 PF01225 Mur ligase family, catalytic domain CA604_RS06530 PF08245 Mur ligase middle domain CA604_RS06530 PF02875 Mur ligase family, glutamate ligase domain CA604_RS06535 PF03033 Glycosyltransferase family 28 N-terminal domain CA604_RS06535 PF04101 Glycosyltransferase family 28 C-terminal domain CA604_RS06540 PF01098 Cell cycle protein CA604_RS06545 PF08245 Mur ligase middle domain CA604_RS06545 PF02875 Mur ligase family, glutamate ligase domain CA604_RS06550 PF00953 Glycosyl transferase family 4 CA604_RS06555 PF02875 Mur ligase family, glutamate ligase domain CA604_RS06555 PF08245 Mur ligase middle domain CA604_RS06555 PF01225 Mur ligase family, catalytic domain CA604_RS06560 PF03717 Penicillin-binding Protein dimerisation domain CA604_RS06560 PF00905 Penicillin binding protein transpeptidase domain CA604_RS06570 PF01795 MraW methylase family CA604_RS06575 PF02381 MraZ protein, putative antitoxin-like CA604_RS06585 PF06628 Catalase-related immune-responsive CA604_RS06585 PF00199 Catalase CA604_RS06590 PF02091 Glycyl-tRNA synthetase alpha subunit CA604_RS06595 PF02092 Glycyl-tRNA synthetase beta subunit CA604_RS06595 PF05746 DALR anticodon binding domain CA604_RS06615 PF00398 Ribosomal RNA adenine dimethylase CA604_RS06620 PF09312 SurA N-terminal domain CA604_RS06620 PF00639 PPIC-type PPIASE domain CA604_RS06625 PF04453 LPS transport system D CA604_RS06630 PF01636 Phosphotransferase enzyme family CA604_RS06635 PF00483 Nucleotidyl transferase CA604_RS06645 PF00486 Transcriptional regulatory protein, C terminal CA604_RS06645 PF00072 Response regulator receiver domain CA604_RS06650 PF00512 His Kinase A (phospho-acceptor) domain CA604_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS06650 PF00672 HAMP domain CA604_RS06655 PF00749 tRNA synthetases class I (E and Q), catalytic domain CA604_RS06655 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CA604_RS06660 PF03775 Septum formation inhibitor MinC, C-terminal domain CA604_RS06660 PF05209 Septum formation inhibitor MinC, N-terminal domain CA604_RS06665 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CA604_RS06670 PF03776 Septum formation topological specificity factor MinE CA604_RS06680 PF12848 ABC transporter CA604_RS06680 PF00005 ABC transporter CA604_RS06690 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CA604_RS06695 PF00005 ABC transporter CA604_RS06695 PF17755 UvrA DNA-binding domain CA604_RS06695 PF17760 UvrA interaction domain CA604_RS06700 PF00899 ThiF family CA604_RS06705 PF01243 Pyridoxamine 5'-phosphate oxidase CA604_RS06705 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CA604_RS06710 PF03150 Di-haem cytochrome c peroxidase CA604_RS06710 PF00034 Cytochrome c CA604_RS06715 PF03481 Putative GTP-binding controlling metal-binding CA604_RS06715 PF01300 Telomere recombination CA604_RS06720 PF02222 ATP-grasp domain CA604_RS06720 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CA604_RS06725 PF00731 AIR carboxylase CA604_RS06730 PF01259 SAICAR synthetase CA604_RS06735 PF01116 Fructose-bisphosphate aldolase class-II CA604_RS06740 PF00795 Carbon-nitrogen hydrolase CA604_RS06745 PF00162 Phosphoglycerate kinase CA604_RS06750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CA604_RS06750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CA604_RS06755 PF00456 Transketolase, thiamine diphosphate binding domain CA604_RS06755 PF02779 Transketolase, pyrimidine binding domain CA604_RS06755 PF02780 Transketolase, C-terminal domain CA604_RS06760 PF04452 RNA methyltransferase CA604_RS06775 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CA604_RS06800 PF02547 Queuosine biosynthesis protein CA604_RS06805 PF01702 Queuine tRNA-ribosyltransferase CA604_RS06810 PF02699 Preprotein translocase subunit CA604_RS06815 PF02355 Protein export membrane protein CA604_RS06815 PF07549 SecD/SecF GG Motif CA604_RS06815 PF13721 SecD export protein N-terminal TM region CA604_RS06820 PF02355 Protein export membrane protein CA604_RS06820 PF07549 SecD/SecF GG Motif CA604_RS06825 PF04055 Radical SAM superfamily CA604_RS06825 PF01938 TRAM domain CA604_RS06825 PF00919 Uncharacterized protein family UPF0004 CA604_RS06830 PF02562 PhoH-like protein CA604_RS06835 PF02130 Uncharacterized protein family UPF0054 CA604_RS06840 PF03471 Transporter associated domain CA604_RS06840 PF00571 CBS domain CA604_RS06845 PF00795 Carbon-nitrogen hydrolase CA604_RS06860 PF03895 YadA-like membrane anchor domain CA604_RS06860 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS06860 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS06860 PF05658 Head domain of trimeric autotransporter adhesin CA604_RS06865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CA604_RS06865 PF00005 ABC transporter CA604_RS06870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CA604_RS06875 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS06880 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS06880 PF12911 N-terminal TM domain of oligopeptide transport permease C CA604_RS06885 PF03576 Peptidase family S58 CA604_RS06895 PF01112 Asparaginase CA604_RS06900 PF00075 RNase H CA604_RS06910 PF00753 Metallo-beta-lactamase superfamily CA604_RS06910 PF16123 Hydroxyacylglutathione hydrolase C-terminus CA604_RS06915 PF01464 Transglycosylase SLT domain CA604_RS06915 PF01476 LysM domain CA604_RS06920 PF00691 OmpA family CA604_RS06920 PF01389 OmpA-like transmembrane domain CA604_RS06930 PF00677 Lumazine binding domain CA604_RS06935 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CA604_RS06935 PF01872 RibD C-terminal domain CA604_RS06940 PF03477 ATP cone domain CA604_RS06945 PF00464 Serine hydroxymethyltransferase CA604_RS06950 PF01479 S4 domain CA604_RS06950 PF00579 tRNA synthetases class I (W and Y) CA604_RS06955 PF03702 Anhydro-N-acetylmuramic acid kinase CA604_RS06960 PF01521 Iron-sulphur cluster biosynthesis CA604_RS06970 PF00380 Ribosomal protein S9/S16 CA604_RS06975 PF00572 Ribosomal protein L13 CA604_RS06980 PF01523 Putative modulator of DNA gyrase CA604_RS06985 PF04751 Protein of unknown function (DUF615) CA604_RS06990 PF02230 Phospholipase/Carboxylesterase CA604_RS06995 PF00749 tRNA synthetases class I (E and Q), catalytic domain CA604_RS07010 PF00294 pfkB family carbohydrate kinase CA604_RS07025 PF00289 Biotin carboxylase, N-terminal domain CA604_RS07025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CA604_RS07025 PF02785 Biotin carboxylase C-terminal domain CA604_RS07030 PF00364 Biotin-requiring enzyme CA604_RS07035 PF02875 Mur ligase family, glutamate ligase domain CA604_RS07035 PF08245 Mur ligase middle domain CA604_RS07035 PF01225 Mur ligase family, catalytic domain CA604_RS07040 PF08206 Ribonuclease B OB domain CA604_RS07040 PF00773 RNB domain CA604_RS07050 PF00149 Calcineurin-like phosphoesterase CA604_RS07055 PF01553 Acyltransferase CA604_RS07060 PF01979 Amidohydrolase family CA604_RS07065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CA604_RS07065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CA604_RS07070 PF03652 Holliday junction resolvase CA604_RS07075 PF02622 Uncharacterized ACR, COG1678 CA604_RS07080 PF00301 Rubredoxin CA604_RS07085 PF02581 Thiamine monophosphate synthase CA604_RS07090 PF00202 Aminotransferase class-III CA604_RS07095 PF00271 Helicase conserved C-terminal domain CA604_RS07095 PF00270 DEAD/DEAH box helicase CA604_RS07105 PF12627 Probable RNA and SrmB- binding site of polymerase A CA604_RS07105 PF01743 Poly A polymerase head domain CA604_RS07130 PF03527 RHS protein CA604_RS07130 PF05593 RHS Repeat CA604_RS07140 PF03527 RHS protein CA604_RS07140 PF05593 RHS Repeat CA604_RS07150 PF06715 Gp5 C-terminal repeat (3 copies) CA604_RS07150 PF04717 Type VI secretion system, phage-baseplate injector CA604_RS07160 PF04328 Selenoprotein, putative CA604_RS07165 PF13722 5TM C-terminal transporter carbon starvation CstA CA604_RS07165 PF02554 Carbon starvation protein CstA CA604_RS07180 PF05145 Transition state regulatory protein AbrB CA604_RS07185 PF01970 Tripartite tricarboxylate transporter TctA family CA604_RS07200 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CA604_RS07200 PF05221 S-adenosyl-L-homocysteine hydrolase CA604_RS07205 PF02773 S-adenosylmethionine synthetase, C-terminal domain CA604_RS07205 PF02772 S-adenosylmethionine synthetase, central domain CA604_RS07205 PF00438 S-adenosylmethionine synthetase, N-terminal domain CA604_RS07210 PF03279 Bacterial lipid A biosynthesis acyltransferase CA604_RS07215 PF00156 Phosphoribosyl transferase domain CA604_RS07220 PF03372 Endonuclease/Exonuclease/phosphatase family CA604_RS07230 PF07690 Major Facilitator Superfamily CA604_RS07235 PF00561 alpha/beta hydrolase fold CA604_RS07240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CA604_RS07250 PF00375 Sodium:dicarboxylate symporter family CA604_RS07255 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CA604_RS07255 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CA604_RS07255 PF01276 Orn/Lys/Arg decarboxylase, major domain CA604_RS07265 PF00005 ABC transporter CA604_RS07275 PF00245 Alkaline phosphatase CA604_RS07280 PF00072 Response regulator receiver domain CA604_RS07280 PF00196 Bacterial regulatory proteins, luxR family CA604_RS07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CA604_RS07285 PF00512 His Kinase A (phospho-acceptor) domain CA604_RS07290 PF00034 Cytochrome c CA604_RS07290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CA604_RS07295 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CA604_RS07300 PF03150 Di-haem cytochrome c peroxidase CA604_RS07355 PF04386 Stringent starvation protein B CA604_RS07360 PF00043 Glutathione S-transferase, C-terminal domain CA604_RS07360 PF02798 Glutathione S-transferase, N-terminal domain CA604_RS07365 PF02167 Cytochrome C1 family CA604_RS07370 PF00033 Cytochrome b/b6/petB CA604_RS07370 PF00032 Cytochrome b(C-terminal)/b6/petD CA604_RS07375 PF00355 Rieske [2Fe-2S] domain CA604_RS07375 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CA604_RS07380 PF01741 Large-conductance mechanosensitive channel, MscL CA604_RS07385 PF01784 NIF3 (NGG1p interacting factor 3) CA604_RS07390 PF00595 PDZ domain CA604_RS07395 PF00902 Sec-independent protein translocase protein (TatC) CA604_RS07400 PF02416 mttA/Hcf106 family CA604_RS07405 PF02416 mttA/Hcf106 family CA604_RS07410 PF00977 Histidine biosynthesis protein CA604_RS07415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CA604_RS07425 PF01061 ABC-2 type transporter CA604_RS07430 PF00005 ABC transporter CA604_RS07440 PF04333 MlaA lipoprotein CA604_RS07445 PF02470 MlaD protein CA604_RS07450 PF02405 Permease MlaE CA604_RS07455 PF00005 ABC transporter CA604_RS07460 PF02481 DNA recombination-mediator protein A CA604_RS07460 PF18255 DNA processing protein A sterile alpha motif domain CA604_RS07465 PF01327 Polypeptide deformylase CA604_RS07470 PF01168 Alanine racemase, N-terminal domain CA604_RS07475 PF01595 Cyclin M transmembrane N-terminal domain CA604_RS07475 PF03471 Transporter associated domain CA604_RS07475 PF00571 CBS domain CA604_RS07480 PF01380 SIS domain CA604_RS07485 PF08534 Redoxin CA604_RS07485 PF01641 SelR domain CA604_RS07485 PF01625 Peptide methionine sulfoxide reductase CA604_RS07495 PF00436 Single-strand binding protein family CA604_RS07500 PF00436 Single-strand binding protein family CA604_RS07505 PF07690 Major Facilitator Superfamily CA604_RS07510 PF17755 UvrA DNA-binding domain CA604_RS07510 PF17760 UvrA interaction domain CA604_RS07515 PF07715 TonB-dependent Receptor Plug Domain CA604_RS07515 PF00593 TonB dependent receptor CA604_RS07520 PF01966 HD domain CA604_RS07520 PF13286 Phosphohydrolase-associated domain CA604_RS07525 PF17092 Penicillin-binding protein OB-like domain CA604_RS07525 PF00905 Penicillin binding protein transpeptidase domain CA604_RS07525 PF00912 Transglycosylase CA604_RS07530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CA604_RS07530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CA604_RS07540 PF01491 Frataxin-like domain CA604_RS07545 PF01578 Cytochrome C assembly protein CA604_RS07550 PF05140 ResB-like family CA604_RS07560 PF01926 50S ribosome-binding GTPase CA604_RS07570 PF00490 Delta-aminolevulinic acid dehydratase CA604_RS07575 PF02683 Cytochrome C biogenesis protein transmembrane region CA604_RS07575 PF11412 Disulphide bond corrector protein DsbC CA604_RS07585 PF03616 Sodium/glutamate symporter CA604_RS07590 PF00491 Arginase family CA604_RS07605 PF01196 Ribosomal protein L17 CA604_RS07610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CA604_RS07610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CA604_RS07610 PF01000 RNA polymerase Rpb3/RpoA insert domain CA604_RS07615 PF01479 S4 domain CA604_RS07615 PF00163 Ribosomal protein S4/S9 N-terminal domain CA604_RS07620 PF00411 Ribosomal protein S11 CA604_RS07625 PF00416 Ribosomal protein S13/S18 CA604_RS07630 PF00444 Ribosomal protein L36 CA604_RS07635 PF01176 Translation initiation factor 1A / IF-1 CA604_RS07640 PF00344 SecY translocase CA604_RS07645 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CA604_RS07650 PF00327 Ribosomal protein L30p/L7e CA604_RS07655 PF03719 Ribosomal protein S5, C-terminal domain CA604_RS07655 PF00333 Ribosomal protein S5, N-terminal domain CA604_RS07660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CA604_RS07665 PF00347 Ribosomal protein L6 CA604_RS07670 PF00410 Ribosomal protein S8 CA604_RS07675 PF00253 Ribosomal protein S14p/S29e CA604_RS07680 PF00673 ribosomal L5P family C-terminus CA604_RS07680 PF00281 Ribosomal protein L5 CA604_RS07685 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CA604_RS07690 PF00238 Ribosomal protein L14p/L23e CA604_RS07695 PF03553 Na+/H+ antiporter family CA604_RS07695 PF13726 Na+-H+ antiporter family CA604_RS07700 PF03553 Na+/H+ antiporter family CA604_RS07700 PF13726 Na+-H+ antiporter family CA604_RS07705 PF07732 Multicopper oxidase CA604_RS07705 PF00394 Multicopper oxidase CA604_RS07710 PF02630 SCO1/SenC CA604_RS07720 PF00403 Heavy-metal-associated domain CA604_RS07730 PF01970 Tripartite tricarboxylate transporter TctA family CA604_RS07740 PF02798 Glutathione S-transferase, N-terminal domain CA604_RS07740 PF00043 Glutathione S-transferase, C-terminal domain CA604_RS07745 PF13635 Domain of unknown function (DUF4143) CA604_RS07745 PF13173 AAA domain CA604_RS07760 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS07760 PF03895 YadA-like membrane anchor domain CA604_RS07760 PF05658 Head domain of trimeric autotransporter adhesin CA604_RS07765 PF03895 YadA-like membrane anchor domain CA604_RS07765 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS07765 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS07765 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CA604_RS07770 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS07770 PF03895 YadA-like membrane anchor domain CA604_RS07770 PF05658 Head domain of trimeric autotransporter adhesin CA604_RS07770 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS07770 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS07770 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS07770 PF03895 YadA-like membrane anchor domain CA604_RS07770 PF05658 Head domain of trimeric autotransporter adhesin CA604_RS07775 PF13018 Extended Signal Peptide of Type V secretion system CA604_RS07775 PF05662 Coiled stalk of trimeric autotransporter adhesin CA604_RS07775 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CA604_RS07775 PF03895 YadA-like membrane anchor domain CA604_RS07780 PF00366 Ribosomal protein S17 CA604_RS07785 PF00831 Ribosomal L29 protein CA604_RS07790 PF00252 Ribosomal protein L16p/L10e CA604_RS07795 PF07650 KH domain CA604_RS07795 PF00189 Ribosomal protein S3, C-terminal domain CA604_RS07800 PF00237 Ribosomal protein L22p/L17e CA604_RS07805 PF00203 Ribosomal protein S19 CA604_RS07810 PF00181 Ribosomal Proteins L2, RNA binding domain CA604_RS07810 PF03947 Ribosomal Proteins L2, C-terminal domain CA604_RS07815 PF00276 Ribosomal protein L23 CA604_RS07820 PF00573 Ribosomal protein L4/L1 family CA604_RS07825 PF00297 Ribosomal protein L3 CA604_RS07830 PF02646 RmuC family CA604_RS07835 PF03180 NLPA lipoprotein CA604_RS07840 PF00528 Binding-protein-dependent transport system inner membrane component CA604_RS07845 PF09383 NIL domain CA604_RS07845 PF00005 ABC transporter CA604_RS07865 PF00338 Ribosomal protein S10p/S20e CA604_RS07870 PF00664 ABC transporter transmembrane region CA604_RS07870 PF00005 ABC transporter CA604_RS07880 PF03143 Elongation factor Tu C-terminal domain CA604_RS07880 PF03144 Elongation factor Tu domain 2 CA604_RS07880 PF00009 Elongation factor Tu GTP binding domain CA604_RS07885 PF03144 Elongation factor Tu domain 2 CA604_RS07885 PF00009 Elongation factor Tu GTP binding domain CA604_RS07885 PF03764 Elongation factor G, domain IV CA604_RS07885 PF14492 Elongation Factor G, domain II CA604_RS07885 PF00679 Elongation factor G C-terminus CA604_RS07890 PF00177 Ribosomal protein S7p/S5e CA604_RS07895 PF00164 Ribosomal protein S12/S23 CA604_RS07915 PF03328 HpcH/HpaI aldolase/citrate lyase family CA604_RS07920 PF02515 CoA-transferase family III CA604_RS07930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CA604_RS07930 PF02770 Acyl-CoA dehydrogenase, middle domain CA604_RS07930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CA604_RS07950 PF01555 DNA methylase CA604_RS07955 PF06945 Protein of unknown function (DUF1289) CA604_RS07960 PF00696 Amino acid kinase family CA604_RS07965 PF00202 Aminotransferase class-III CA604_RS07970 PF01118 Semialdehyde dehydrogenase, NAD binding domain CA604_RS07970 PF02774 Semialdehyde dehydrogenase, dimerisation domain CA604_RS07985 PF00491 Arginase family CA604_RS07990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CA604_RS07990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CA604_RS07995 PF05000 RNA polymerase Rpb1, domain 4 CA604_RS07995 PF04998 RNA polymerase Rpb1, domain 5 CA604_RS07995 PF04997 RNA polymerase Rpb1, domain 1 CA604_RS07995 PF00623 RNA polymerase Rpb1, domain 2 CA604_RS07995 PF04983 RNA polymerase Rpb1, domain 3 CA604_RS08000 PF04561 RNA polymerase Rpb2, domain 2 CA604_RS08000 PF04563 RNA polymerase beta subunit CA604_RS08000 PF04560 RNA polymerase Rpb2, domain 7 CA604_RS08000 PF04565 RNA polymerase Rpb2, domain 3 CA604_RS08000 PF00562 RNA polymerase Rpb2, domain 6 CA604_RS08000 PF10385 RNA polymerase beta subunit external 1 domain CA604_RS08005 PF00542 Ribosomal protein L7/L12 C-terminal domain CA604_RS08005 PF16320 Ribosomal protein L7/L12 dimerisation domain CA604_RS08010 PF00466 Ribosomal protein L10 CA604_RS08015 PF00687 Ribosomal protein L1p/L10e family CA604_RS08020 PF03946 Ribosomal protein L11, N-terminal domain CA604_RS08020 PF00298 Ribosomal protein L11, RNA binding domain CA604_RS08025 PF00467 KOW motif CA604_RS08025 PF02357 Transcription termination factor nusG CA604_RS08030 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CA604_RS08040 PF03143 Elongation factor Tu C-terminal domain CA604_RS08040 PF03144 Elongation factor Tu domain 2 CA604_RS08040 PF00009 Elongation factor Tu GTP binding domain CA604_RS08065 PF02195 ParB-like nuclease domain CA604_RS08065 PF17762 HTH domain found in ParB protein CA604_RS08070 PF13614 AAA domain CA604_RS08075 PF02527 rRNA small subunit methyltransferase G CA604_RS08080 PF01134 Glucose inhibited division protein A CA604_RS08080 PF13932 GidA associated domain CA604_RS08085 PF01230 HIT domain CA604_RS08090 PF14849 YidC periplasmic domain CA604_RS08090 PF02096 60Kd inner membrane protein CA604_RS08095 PF01809 Putative membrane protein insertion efficiency factor CA604_RS08100 PF00825 Ribonuclease P CA604_RS08105 PF00468 Ribosomal protein L34