RPIT_RS00010	PWY-5278	sulfite oxidation III
RPIT_RS00010	PWY-5340	sulfate activation for sulfonation
RPIT_RS00010	PWY-6683	sulfate reduction III (assimilatory)
RPIT_RS00010	PWY-6932	selenate reduction
RPIT_RS00020	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_RS00025	PWY-5392	reductive TCA cycle II
RPIT_RS00025	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS00035	PWY-5194	siroheme biosynthesis
RPIT_RS00035	PWY-5441	S-methyl-L-methionine cycle
RPIT_RS00035	PWY-702	L-methionine biosynthesis II
RPIT_RS00035	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_RS00040	PWY-5194	siroheme biosynthesis
RPIT_RS00040	PWY-5441	S-methyl-L-methionine cycle
RPIT_RS00040	PWY-702	L-methionine biosynthesis II
RPIT_RS00040	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_RS00060	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS00060	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS00060	PWY-5744	glyoxylate assimilation
RPIT_RS00060	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS00060	PWY-6679	jadomycin biosynthesis
RPIT_RS00060	PWY-6722	candicidin biosynthesis
RPIT_RS00060	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_RS00110	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS00110	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_RS00110	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_RS00110	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS00115	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RPIT_RS00115	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RPIT_RS00330	PWY-4981	L-proline biosynthesis II (from arginine)
RPIT_RS00330	PWY-4984	urea cycle
RPIT_RS00330	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS00360	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_RS00405	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
RPIT_RS00420	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
RPIT_RS00455	PWY-4983	L-citrulline-nitric oxide cycle
RPIT_RS00455	PWY-4984	urea cycle
RPIT_RS00455	PWY-5	canavanine biosynthesis
RPIT_RS00455	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS00455	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS00480	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
RPIT_RS00530	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
RPIT_RS00585	PWY-5515	L-arabinose degradation II
RPIT_RS00585	PWY-5525	D-glucuronate degradation I
RPIT_RS00585	PWY-7378	aminopropanol phosphate biosynthesis II
RPIT_RS00605	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_RS00605	PWY-5054	sorbitol biosynthesis I
RPIT_RS00605	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RPIT_RS00605	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_RS00605	PWY-5659	GDP-mannose biosynthesis
RPIT_RS00605	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS00605	PWY-621	sucrose degradation III (sucrose invertase)
RPIT_RS00605	PWY-622	starch biosynthesis
RPIT_RS00605	PWY-6981	chitin biosynthesis
RPIT_RS00605	PWY-6992	1,5-anhydrofructose degradation
RPIT_RS00605	PWY-7238	sucrose biosynthesis II
RPIT_RS00605	PWY-7347	sucrose biosynthesis III
RPIT_RS00605	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_RS00655	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS00655	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS00655	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS00655	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_RS00960	PWY-7205	CMP phosphorylation
RPIT_RS01050	PWY-6807	xyloglucan degradation II (exoglucanase)
RPIT_RS01090	PWY-4261	glycerol degradation I
RPIT_RS01090	PWY-6118	glycerol-3-phosphate shuttle
RPIT_RS01090	PWY-6952	glycerophosphodiester degradation
RPIT_RS01095	PWY-4261	glycerol degradation I
RPIT_RS01095	PWY-6118	glycerol-3-phosphate shuttle
RPIT_RS01095	PWY-6952	glycerophosphodiester degradation
RPIT_RS01200	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
RPIT_RS01205	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
RPIT_RS01265	PWY-7181	pyrimidine deoxyribonucleosides degradation
RPIT_RS01305	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_RS01440	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPIT_RS01440	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_RS01440	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS01440	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RPIT_RS01440	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_RS01440	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_RS01520	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS01520	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS01535	PWY-6599	guanine and guanosine salvage II
RPIT_RS01535	PWY-6609	adenine and adenosine salvage III
RPIT_RS01535	PWY-6610	adenine and adenosine salvage IV
RPIT_RS01535	PWY-6620	guanine and guanosine salvage
RPIT_RS01545	PWY-5663	tetrahydrobiopterin biosynthesis I
RPIT_RS01545	PWY-5664	tetrahydrobiopterin biosynthesis II
RPIT_RS01545	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_RS01545	PWY-6703	preQ<sub>0</sub> biosynthesis
RPIT_RS01545	PWY-6983	tetrahydrobiopterin biosynthesis III
RPIT_RS01545	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RPIT_RS01550	PWY-6614	tetrahydrofolate biosynthesis
RPIT_RS01555	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_RS01555	PWY-6148	tetrahydromethanopterin biosynthesis
RPIT_RS01555	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RPIT_RS01555	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RPIT_RS01560	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_RS01560	PWY-6148	tetrahydromethanopterin biosynthesis
RPIT_RS01560	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
RPIT_RS01560	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
RPIT_RS01570	PWY-6614	tetrahydrofolate biosynthesis
RPIT_RS01650	PWY-2941	L-lysine biosynthesis II
RPIT_RS01650	PWY-2942	L-lysine biosynthesis III
RPIT_RS01650	PWY-5097	L-lysine biosynthesis VI
RPIT_RS01650	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS01650	PWY-6559	spermidine biosynthesis II
RPIT_RS01650	PWY-6562	norspermidine biosynthesis
RPIT_RS01650	PWY-7153	grixazone biosynthesis
RPIT_RS01650	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS01655	PWY-3341	L-proline biosynthesis III
RPIT_RS01655	PWY-4981	L-proline biosynthesis II (from arginine)
RPIT_RS01655	PWY-6344	L-ornithine degradation II (Stickland reaction)
RPIT_RS01670	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS01670	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_RS01845	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS01875	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_RS01875	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_RS01875	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_RS01885	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
RPIT_RS01885	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
RPIT_RS01885	PWY-6920	6-gingerol analog biosynthesis
RPIT_RS01885	PWY-7007	methyl ketone biosynthesis
RPIT_RS01885	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
RPIT_RS01885	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
RPIT_RS01885	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
RPIT_RS01885	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
RPIT_RS01885	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
RPIT_RS01885	PWY-735	jasmonic acid biosynthesis
RPIT_RS01885	PWY-7606	docosahexaenoate biosynthesis III (mammals)
RPIT_RS01885	PWY-7726	RPIT_RS01885
RPIT_RS01915	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_RS01915	PWY-6124	inosine-5'-phosphate biosynthesis II
RPIT_RS01915	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS01915	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_RS01940	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_RS01945	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_RS01945	PWY-6124	inosine-5'-phosphate biosynthesis II
RPIT_RS01945	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_RS01960	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_RS01960	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_RS01960	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_RS01965	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_RS01965	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_RS01965	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_RS01975	PWY-4061	glutathione-mediated detoxification I
RPIT_RS01975	PWY-6842	glutathione-mediated detoxification II
RPIT_RS01975	PWY-7112	4-hydroxy-2-nonenal detoxification
RPIT_RS01985	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_RS01985	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_RS01985	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_RS02020	PWY-5392	reductive TCA cycle II
RPIT_RS02020	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_RS02020	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS02020	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS02020	PWY-6728	methylaspartate cycle
RPIT_RS02020	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS02020	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_RS02020	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_RS02025	PWY-723	alkylnitronates degradation
RPIT_RS02085	PWY-6823	molybdenum cofactor biosynthesis
RPIT_RS02130	PWY-6823	molybdenum cofactor biosynthesis
RPIT_RS02140	PWY-6823	molybdenum cofactor biosynthesis
RPIT_RS02330	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_RS02330	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_RS02330	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_RS02330	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_RS02335	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_RS02335	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
RPIT_RS02335	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
RPIT_RS02360	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS02360	PWY-6549	L-glutamine biosynthesis III
RPIT_RS02360	PWY-6728	methylaspartate cycle
RPIT_RS02360	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS02360	PWY-7124	ethylene biosynthesis V (engineered)
RPIT_RS02360	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_RS02360	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPIT_RS02380	PWY-5674	nitrate reduction IV (dissimilatory)
RPIT_RS02495	PWY-3821	galactose degradation III
RPIT_RS02495	PWY-6317	galactose degradation I (Leloir pathway)
RPIT_RS02495	PWY-6527	stachyose degradation
RPIT_RS02520	PWY-5839	menaquinol-7 biosynthesis
RPIT_RS02520	PWY-5851	demethylmenaquinol-9 biosynthesis
RPIT_RS02520	PWY-5852	demethylmenaquinol-8 biosynthesis I
RPIT_RS02520	PWY-5853	demethylmenaquinol-6 biosynthesis I
RPIT_RS02520	PWY-5890	menaquinol-10 biosynthesis
RPIT_RS02520	PWY-5891	menaquinol-11 biosynthesis
RPIT_RS02520	PWY-5892	menaquinol-12 biosynthesis
RPIT_RS02520	PWY-5895	menaquinol-13 biosynthesis
RPIT_RS02525	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS02525	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_RS02525	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RPIT_RS02525	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS02525	PWY-5723	Rubisco shunt
RPIT_RS02525	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_RS02525	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS02525	PWY-6886	1-butanol autotrophic biosynthesis
RPIT_RS02525	PWY-6901	superpathway of glucose and xylose degradation
RPIT_RS02525	PWY-7003	glycerol degradation to butanol
RPIT_RS02525	PWY-7124	ethylene biosynthesis V (engineered)
RPIT_RS02525	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RPIT_RS02530	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_RS02540	PWY-5839	menaquinol-7 biosynthesis
RPIT_RS02540	PWY-5844	menaquinol-9 biosynthesis
RPIT_RS02540	PWY-5849	menaquinol-6 biosynthesis
RPIT_RS02540	PWY-5890	menaquinol-10 biosynthesis
RPIT_RS02540	PWY-5891	menaquinol-11 biosynthesis
RPIT_RS02540	PWY-5892	menaquinol-12 biosynthesis
RPIT_RS02540	PWY-5895	menaquinol-13 biosynthesis
RPIT_RS02565	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_RS02565	PWY-5901	2,3-dihydroxybenzoate biosynthesis
RPIT_RS02565	PWY-6406	salicylate biosynthesis I
RPIT_RS02665	PWY-5392	reductive TCA cycle II
RPIT_RS02665	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS02730	PWY-4202	arsenate detoxification I (glutaredoxin)
RPIT_RS02730	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_RS02730	PWY-6608	guanosine nucleotides degradation III
RPIT_RS02730	PWY-6609	adenine and adenosine salvage III
RPIT_RS02730	PWY-6611	adenine and adenosine salvage V
RPIT_RS02730	PWY-6620	guanine and guanosine salvage
RPIT_RS02730	PWY-6627	salinosporamide A biosynthesis
RPIT_RS02730	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
RPIT_RS02730	PWY-7179	purine deoxyribonucleosides degradation I
RPIT_RS02730	PWY-7179-1	purine deoxyribonucleosides degradation
RPIT_RS02760	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_RS02760	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_RS02910	PWY-5480	pyruvate fermentation to ethanol I
RPIT_RS02910	PWY-5485	pyruvate fermentation to acetate IV
RPIT_RS02910	PWY-5493	reductive monocarboxylic acid cycle
RPIT_RS02940	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS02950	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS02955	PWY-4061	glutathione-mediated detoxification I
RPIT_RS02955	PWY-6842	glutathione-mediated detoxification II
RPIT_RS02955	PWY-7112	4-hydroxy-2-nonenal detoxification
RPIT_RS02955	PWY-7533	gliotoxin biosynthesis
RPIT_RS02980	PWY-6807	xyloglucan degradation II (exoglucanase)
RPIT_RS03060	PWY-5350	thiosulfate disproportionation III (rhodanese)
RPIT_RS03175	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS03175	PWY-5723	Rubisco shunt
RPIT_RS03180	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RPIT_RS03190	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
RPIT_RS03235	PWY-5642	2,4-dinitrotoluene degradation
RPIT_RS03235	PWY-6373	acrylate degradation
RPIT_RS03260	PWY-5940	streptomycin biosynthesis
RPIT_RS03260	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
RPIT_RS03260	PWY-7241	<I>myo</I>-inositol degradation II
RPIT_RS03365	PWY-6854	ethylene biosynthesis III (microbes)
RPIT_RS03405	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_RS03450	PWY-381	nitrate reduction II (assimilatory)
RPIT_RS03450	PWY-5675	nitrate reduction V (assimilatory)
RPIT_RS03450	PWY-6549	L-glutamine biosynthesis III
RPIT_RS03450	PWY-6963	ammonia assimilation cycle I
RPIT_RS03450	PWY-6964	ammonia assimilation cycle II
RPIT_RS03490	PWY-381	nitrate reduction II (assimilatory)
RPIT_RS03490	PWY-5675	nitrate reduction V (assimilatory)
RPIT_RS03490	PWY-6549	L-glutamine biosynthesis III
RPIT_RS03490	PWY-6963	ammonia assimilation cycle I
RPIT_RS03490	PWY-6964	ammonia assimilation cycle II
RPIT_RS03520	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
RPIT_RS03520	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
RPIT_RS03590	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_RS03590	PWY-4521	arsenite oxidation I (respiratory)
RPIT_RS03590	PWY-6692	Fe(II) oxidation
RPIT_RS03590	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_RS03595	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_RS03595	PWY-4521	arsenite oxidation I (respiratory)
RPIT_RS03595	PWY-6692	Fe(II) oxidation
RPIT_RS03595	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_RS03650	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_RS03650	PWY-6596	adenosine nucleotides degradation I
RPIT_RS03650	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS03745	PWY-6164	3-dehydroquinate biosynthesis I
RPIT_RS03765	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RPIT_RS03765	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RPIT_RS03765	PWY-6897	thiamin salvage II
RPIT_RS03765	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RPIT_RS03765	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RPIT_RS03765	PWY-7356	thiamin salvage IV (yeast)
RPIT_RS03765	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_RS03780	PWY-2201	folate transformations I
RPIT_RS03780	PWY-3841	folate transformations II
RPIT_RS03845	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
RPIT_RS03875	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS03875	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_RS03875	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_RS03875	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS03940	PWY-2201	folate transformations I
RPIT_RS03960	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_RS03960	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_RS03965	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS03965	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_RS03965	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS03970	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_RS03970	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_RS03980	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS03980	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_RS03980	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_RS03980	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS03985	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_RS03985	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_RS04030	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS04030	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RPIT_RS04030	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS04030	PWY-5723	Rubisco shunt
RPIT_RS04030	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS04030	PWY-6886	1-butanol autotrophic biosynthesis
RPIT_RS04030	PWY-6901	superpathway of glucose and xylose degradation
RPIT_RS04030	PWY-7003	glycerol degradation to butanol
RPIT_RS04030	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RPIT_RS04030	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_RS04160	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS04160	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS04160	PWY-6901	superpathway of glucose and xylose degradation
RPIT_RS04160	PWY-7003	glycerol degradation to butanol
RPIT_RS04165	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS04165	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS04165	PWY-6886	1-butanol autotrophic biosynthesis
RPIT_RS04165	PWY-6901	superpathway of glucose and xylose degradation
RPIT_RS04165	PWY-7003	glycerol degradation to butanol
RPIT_RS04170	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS04170	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS04170	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS04170	PWY-7003	glycerol degradation to butanol
RPIT_RS04210	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_RS04210	PWY-6855	chitin degradation I (archaea)
RPIT_RS04210	PWY-6906	chitin derivatives degradation
RPIT_RS04220	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPIT_RS04245	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_RS04245	PWY-4521	arsenite oxidation I (respiratory)
RPIT_RS04245	PWY-6692	Fe(II) oxidation
RPIT_RS04245	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_RS04310	PWY-6823	molybdenum cofactor biosynthesis
RPIT_RS04310	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_RS04310	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_RS04310	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RPIT_RS04355	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_RS04390	PWY-5971	palmitate biosynthesis II (bacteria and plants)
RPIT_RS04390	PWY-5973	<i>cis</i>-vaccenate biosynthesis
RPIT_RS04390	PWY-5989	stearate biosynthesis II (bacteria and plants)
RPIT_RS04390	PWY-6113	superpathway of mycolate biosynthesis
RPIT_RS04390	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
RPIT_RS04390	PWY-6519	8-amino-7-oxononanoate biosynthesis I
RPIT_RS04390	PWY-7663	gondoate biosynthesis (anaerobic)
RPIT_RS04390	PWY-7664	oleate biosynthesis IV (anaerobic)
RPIT_RS04390	PWYG-321	mycolate biosynthesis
RPIT_RS04415	PWY-5958	acridone alkaloid biosynthesis
RPIT_RS04415	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RPIT_RS04415	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RPIT_RS04475	PWY-5667	CDP-diacylglycerol biosynthesis I
RPIT_RS04475	PWY-5981	CDP-diacylglycerol biosynthesis III
RPIT_RS04480	PWY-2201	folate transformations I
RPIT_RS04495	PWY-7294	xylose degradation IV
RPIT_RS04495	PWY-7295	L-arabinose degradation IV
RPIT_RS04495	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS04575	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
RPIT_RS04575	PWY-6167	flavin biosynthesis II (archaea)
RPIT_RS04575	PWY-6168	flavin biosynthesis III (fungi)
RPIT_RS04595	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
RPIT_RS04595	PWY-6853	ethylene biosynthesis II (microbes)
RPIT_RS04595	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_RS04605	PWY-2941	L-lysine biosynthesis II
RPIT_RS04605	PWY-2942	L-lysine biosynthesis III
RPIT_RS04605	PWY-5097	L-lysine biosynthesis VI
RPIT_RS04640	PWY-3341	L-proline biosynthesis III
RPIT_RS04640	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_RS04650	PWY-3341	L-proline biosynthesis III
RPIT_RS04650	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_RS04655	PWY-5381	pyridine nucleotide cycling (plants)
RPIT_RS04655	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RPIT_RS04675	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS04680	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
RPIT_RS04680	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
RPIT_RS04690	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS04690	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_RS04695	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS04695	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_RS04700	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS04705	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS04705	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_RS04930	PWY-2201	folate transformations I
RPIT_RS04935	PWY-6700	queuosine biosynthesis
RPIT_RS04990	PWY-6871	3-methylbutanol biosynthesis
RPIT_RS05135	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_RS05160	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS05205	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_RS05205	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_RS05205	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS05215	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS05215	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS05215	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS05215	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_RS05475	PWY-7199	pyrimidine deoxyribonucleosides salvage
RPIT_RS05505	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPIT_RS05505	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_RS05505	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS05505	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
RPIT_RS05575	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_RS05575	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_RS05575	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS05630	PWY-5057	L-valine degradation II
RPIT_RS05630	PWY-5076	L-leucine degradation III
RPIT_RS05630	PWY-5078	L-isoleucine degradation II
RPIT_RS05630	PWY-5101	L-isoleucine biosynthesis II
RPIT_RS05630	PWY-5103	L-isoleucine biosynthesis III
RPIT_RS05630	PWY-5104	L-isoleucine biosynthesis IV
RPIT_RS05630	PWY-5108	L-isoleucine biosynthesis V
RPIT_RS05665	PWY-5269	cardiolipin biosynthesis II
RPIT_RS05665	PWY-5668	cardiolipin biosynthesis I
RPIT_RS05710	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS05710	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS05710	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS05710	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_RS05900	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RPIT_RS05900	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPIT_RS05910	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RPIT_RS05910	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_RS05950	PWY-5344	L-homocysteine biosynthesis
RPIT_RS05965	PWY-5344	L-homocysteine biosynthesis
RPIT_RS05965	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
RPIT_RS05980	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RPIT_RS05980	PWY-2161	folate polyglutamylation
RPIT_RS05980	PWY-2201	folate transformations I
RPIT_RS05980	PWY-3841	folate transformations II
RPIT_RS06035	PWY-7205	CMP phosphorylation
RPIT_RS06040	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
RPIT_RS06050	PWY-6829	tRNA methylation (yeast)
RPIT_RS06060	PWY-2201	folate transformations I
RPIT_RS06060	PWY-3841	folate transformations II
RPIT_RS06070	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS06070	PWY-5723	Rubisco shunt
RPIT_RS06075	PWY-6825	phosphatidylcholine biosynthesis V
RPIT_RS06090	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPIT_RS06090	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
RPIT_RS06100	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS06110	PWY-5686	UMP biosynthesis
RPIT_RS06115	PWY-5686	UMP biosynthesis
RPIT_RS06120	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS06120	PWY-5686	UMP biosynthesis
RPIT_RS06120	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS06125	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS06125	PWY-5686	UMP biosynthesis
RPIT_RS06125	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS06145	PWY-6164	3-dehydroquinate biosynthesis I
RPIT_RS06150	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_RS06155	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_RS06160	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_RS06245	PWY-6605	adenine and adenosine salvage II
RPIT_RS06245	PWY-6610	adenine and adenosine salvage IV
RPIT_RS06400	PWY-5958	acridone alkaloid biosynthesis
RPIT_RS06400	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RPIT_RS06400	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RPIT_RS06455	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
RPIT_RS06470	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPIT_RS06470	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
RPIT_RS06470	PWY-6936	seleno-amino acid biosynthesis
RPIT_RS06470	PWY-702	L-methionine biosynthesis II
RPIT_RS06485	PWY-6823	molybdenum cofactor biosynthesis
RPIT_RS06485	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_RS06485	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_RS06485	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
RPIT_RS06505	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
RPIT_RS06505	PWY-622	starch biosynthesis
RPIT_RS06525	PWY-2661	trehalose biosynthesis V
RPIT_RS06530	PWY-2661	trehalose biosynthesis V
RPIT_RS06530	PWY-6902	chitin degradation II
RPIT_RS06540	PWY-2723	trehalose degradation V
RPIT_RS06540	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_RS06540	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RPIT_RS06540	PWY-5661	GDP-glucose biosynthesis
RPIT_RS06540	PWY-5940	streptomycin biosynthesis
RPIT_RS06540	PWY-5941	glycogen degradation II (eukaryotic)
RPIT_RS06540	PWY-622	starch biosynthesis
RPIT_RS06540	PWY-6731	starch degradation III
RPIT_RS06540	PWY-6737	starch degradation V
RPIT_RS06540	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_RS06540	PWY-7238	sucrose biosynthesis II
RPIT_RS06540	PWY-7343	UDP-glucose biosynthesis
RPIT_RS06550	PWY-5741	ethylmalonyl-CoA pathway
RPIT_RS06550	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS06550	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS06550	PWY-6728	methylaspartate cycle
RPIT_RS06550	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_RS06595	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
RPIT_RS06595	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
RPIT_RS06595	PWY-6268	adenosylcobalamin salvage from cobalamin
RPIT_RS06595	PWY-6269	adenosylcobalamin salvage from cobinamide II
RPIT_RS06610	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS06620	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS06650	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS06650	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_RS06650	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS06675	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS06680	PWY-702	L-methionine biosynthesis II
RPIT_RS06690	PWY-2941	L-lysine biosynthesis II
RPIT_RS06690	PWY-2942	L-lysine biosynthesis III
RPIT_RS06690	PWY-5097	L-lysine biosynthesis VI
RPIT_RS06710	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPIT_RS06715	PWY-3821	galactose degradation III
RPIT_RS06715	PWY-6317	galactose degradation I (Leloir pathway)
RPIT_RS06715	PWY-6527	stachyose degradation
RPIT_RS06755	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_RS06875	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS06875	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
RPIT_RS06875	PWY-6638	sulfolactate degradation III
RPIT_RS06875	PWY-6642	(<i>R</i>)-cysteate degradation
RPIT_RS06875	PWY-6643	coenzyme M biosynthesis II
RPIT_RS06875	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPIT_RS06875	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RPIT_RS06875	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_RS06880	PWY-6840	homoglutathione biosynthesis
RPIT_RS06880	PWY-7255	ergothioneine biosynthesis I (bacteria)
RPIT_RS06940	PWY-5101	L-isoleucine biosynthesis II
RPIT_RS06940	PWY-5103	L-isoleucine biosynthesis III
RPIT_RS06940	PWY-5104	L-isoleucine biosynthesis IV
RPIT_RS06940	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_RS06950	PWY-5350	thiosulfate disproportionation III (rhodanese)
RPIT_RS06960	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPIT_RS06960	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_RS06960	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_RS06960	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_RS06960	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS06960	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS06960	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_RS06960	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RPIT_RS06990	PWY-2941	L-lysine biosynthesis II
RPIT_RS06990	PWY-5097	L-lysine biosynthesis VI
RPIT_RS06995	PWY-2781	<i>cis</i>-zeatin biosynthesis
RPIT_RS07050	PWY-5269	cardiolipin biosynthesis II
RPIT_RS07050	PWY-5668	cardiolipin biosynthesis I
RPIT_RS07065	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RPIT_RS07065	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RPIT_RS07065	PWY-6896	thiamin salvage I
RPIT_RS07065	PWY-6897	thiamin salvage II
RPIT_RS07070	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_RS07070	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_RS07120	PWY-3341	L-proline biosynthesis III
RPIT_RS07120	PWY-4981	L-proline biosynthesis II (from arginine)
RPIT_RS07120	PWY-6344	L-ornithine degradation II (Stickland reaction)
RPIT_RS07120	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
RPIT_RS07635	PWY-6825	phosphatidylcholine biosynthesis V
RPIT_RS07870	PWY-5101	L-isoleucine biosynthesis II
RPIT_RS07870	PWY-6871	3-methylbutanol biosynthesis
RPIT_RS07890	PWY-5103	L-isoleucine biosynthesis III
RPIT_RS07890	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_RS07895	PWY-5101	L-isoleucine biosynthesis II
RPIT_RS07895	PWY-5103	L-isoleucine biosynthesis III
RPIT_RS07895	PWY-5104	L-isoleucine biosynthesis IV
RPIT_RS07895	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RPIT_RS07895	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RPIT_RS07895	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RPIT_RS07895	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_RS07900	PWY-5101	L-isoleucine biosynthesis II
RPIT_RS07900	PWY-5103	L-isoleucine biosynthesis III
RPIT_RS07900	PWY-5104	L-isoleucine biosynthesis IV
RPIT_RS07900	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
RPIT_RS07900	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
RPIT_RS07900	PWY-6389	(<i>S</i>)-acetoin biosynthesis
RPIT_RS07900	PWY-7111	pyruvate fermentation to isobutanol (engineered)
RPIT_RS07980	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
RPIT_RS07980	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
RPIT_RS07980	PWY-7717	RPIT_RS07980
RPIT_RS07980	PWY-7733	RPIT_RS07980
RPIT_RS07980	PWY-7734	RPIT_RS07980
RPIT_RS08005	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RPIT_RS08005	PWY-7177	UTP and CTP dephosphorylation II
RPIT_RS08005	PWY-7185	UTP and CTP dephosphorylation I
RPIT_RS08020	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RPIT_RS08020	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPIT_RS08020	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RPIT_RS08120	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS08120	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS08120	PWY-5744	glyoxylate assimilation
RPIT_RS08120	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS08120	PWY-6679	jadomycin biosynthesis
RPIT_RS08120	PWY-6722	candicidin biosynthesis
RPIT_RS08120	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_RS08125	PWY-4983	L-citrulline-nitric oxide cycle
RPIT_RS08125	PWY-4984	urea cycle
RPIT_RS08125	PWY-5	canavanine biosynthesis
RPIT_RS08125	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS08125	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS08140	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS08140	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS08145	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS08150	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
RPIT_RS08150	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
RPIT_RS08260	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
RPIT_RS08490	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_RS08490	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RPIT_RS08490	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_RS08490	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS08490	PWY-6728	methylaspartate cycle
RPIT_RS08490	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS08490	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_RS08490	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_RS08495	PWY-3781	aerobic respiration I (cytochrome c)
RPIT_RS08495	PWY-4302	aerobic respiration III (alternative oxidase pathway)
RPIT_RS08495	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_RS08495	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS08495	PWY-6728	methylaspartate cycle
RPIT_RS08495	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS08495	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_RS08495	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
RPIT_RS08505	PWY-6829	tRNA methylation (yeast)
RPIT_RS08505	PWY-7285	methylwyosine biosynthesis
RPIT_RS08505	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
RPIT_RS08625	PWY-6825	phosphatidylcholine biosynthesis V
RPIT_RS08685	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
RPIT_RS08685	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
RPIT_RS08685	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_RS08685	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS08685	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
RPIT_RS08685	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_RS08685	PWY-7205	CMP phosphorylation
RPIT_RS08685	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_RS08685	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS08685	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS08685	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS08685	PWY-7224	purine deoxyribonucleosides salvage
RPIT_RS08685	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_RS08685	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
RPIT_RS08695	PWY-2161	folate polyglutamylation
RPIT_RS08850	PWY-4061	glutathione-mediated detoxification I
RPIT_RS08850	PWY-6842	glutathione-mediated detoxification II
RPIT_RS08850	PWY-7112	4-hydroxy-2-nonenal detoxification
RPIT_RS08860	PWY-7183	pyrimidine nucleobases salvage I
RPIT_RS08865	PWY-5686	UMP biosynthesis
RPIT_RS08870	PWY-5686	UMP biosynthesis
RPIT_RS09025	PWY-5663	tetrahydrobiopterin biosynthesis I
RPIT_RS09025	PWY-5664	tetrahydrobiopterin biosynthesis II
RPIT_RS09025	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
RPIT_RS09025	PWY-6703	preQ<sub>0</sub> biosynthesis
RPIT_RS09025	PWY-6983	tetrahydrobiopterin biosynthesis III
RPIT_RS09025	PWY-7442	drosopterin and aurodrosopterin biosynthesis
RPIT_RS09105	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS09105	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS09105	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS09105	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS09105	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_RS09120	PWY-2622	trehalose biosynthesis IV
RPIT_RS09210	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS09210	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_RS09210	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_RS09210	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS09385	PWY-3841	folate transformations II
RPIT_RS09385	PWY-6614	tetrahydrofolate biosynthesis
RPIT_RS09395	PWY-3841	folate transformations II
RPIT_RS09395	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
RPIT_RS09395	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
RPIT_RS09395	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
RPIT_RS09395	PWY-7199	pyrimidine deoxyribonucleosides salvage
RPIT_RS09395	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_RS09400	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
RPIT_RS09410	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_RS09410	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_RS09425	PWY-5381	pyridine nucleotide cycling (plants)
RPIT_RS09440	PWY-5941	glycogen degradation II (eukaryotic)
RPIT_RS09440	PWY-6724	starch degradation II
RPIT_RS09440	PWY-6737	starch degradation V
RPIT_RS09440	PWY-7238	sucrose biosynthesis II
RPIT_RS09460	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
RPIT_RS09465	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_RS09465	PWY-6416	quinate degradation II
RPIT_RS09465	PWY-6707	gallate biosynthesis
RPIT_RS09470	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_RS09470	PWY-3861	mannitol degradation II
RPIT_RS09470	PWY-3881	mannitol biosynthesis
RPIT_RS09470	PWY-5054	sorbitol biosynthesis I
RPIT_RS09470	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
RPIT_RS09470	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_RS09470	PWY-5659	GDP-mannose biosynthesis
RPIT_RS09470	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS09470	PWY-621	sucrose degradation III (sucrose invertase)
RPIT_RS09470	PWY-622	starch biosynthesis
RPIT_RS09470	PWY-6981	chitin biosynthesis
RPIT_RS09470	PWY-6992	1,5-anhydrofructose degradation
RPIT_RS09470	PWY-7238	sucrose biosynthesis II
RPIT_RS09470	PWY-7347	sucrose biosynthesis III
RPIT_RS09470	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_RS09470	PWY-7456	mannan degradation
RPIT_RS09470	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
RPIT_RS09470	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
RPIT_RS09480	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_RS09540	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_RS09540	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_RS09560	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS09560	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS09560	PWY-5744	glyoxylate assimilation
RPIT_RS09560	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS09560	PWY-6679	jadomycin biosynthesis
RPIT_RS09560	PWY-6722	candicidin biosynthesis
RPIT_RS09560	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_RS09610	PWY-4202	arsenate detoxification I (glutaredoxin)
RPIT_RS09610	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_RS09610	PWY-6608	guanosine nucleotides degradation III
RPIT_RS09610	PWY-6609	adenine and adenosine salvage III
RPIT_RS09610	PWY-6611	adenine and adenosine salvage V
RPIT_RS09610	PWY-6620	guanine and guanosine salvage
RPIT_RS09610	PWY-6627	salinosporamide A biosynthesis
RPIT_RS09610	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
RPIT_RS09610	PWY-7179	purine deoxyribonucleosides degradation I
RPIT_RS09610	PWY-7179-1	purine deoxyribonucleosides degradation
RPIT_RS09615	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_RS09630	PWY-7193	pyrimidine ribonucleosides salvage I
RPIT_RS09670	PWY-6556	pyrimidine ribonucleosides salvage II
RPIT_RS09670	PWY-7181	pyrimidine deoxyribonucleosides degradation
RPIT_RS09670	PWY-7193	pyrimidine ribonucleosides salvage I
RPIT_RS09670	PWY-7199	pyrimidine deoxyribonucleosides salvage
RPIT_RS09710	PWY-2201	folate transformations I
RPIT_RS09710	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_RS09725	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_RS09725	PWY-5392	reductive TCA cycle II
RPIT_RS09725	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_RS09725	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS09725	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS09725	PWY-6728	methylaspartate cycle
RPIT_RS09725	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS09725	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPIT_RS09725	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_RS09745	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
RPIT_RS09745	PWY-2201	folate transformations I
RPIT_RS09745	PWY-3841	folate transformations II
RPIT_RS09745	PWY-5030	L-histidine degradation III
RPIT_RS09745	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_RS09745	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RPIT_RS09750	PWY-6123	inosine-5'-phosphate biosynthesis I
RPIT_RS09750	PWY-6124	inosine-5'-phosphate biosynthesis II
RPIT_RS09750	PWY-7234	inosine-5'-phosphate biosynthesis III
RPIT_RS09755	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
RPIT_RS09755	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
RPIT_RS09770	PWY-5392	reductive TCA cycle II
RPIT_RS09770	PWY-5537	pyruvate fermentation to acetate V
RPIT_RS09770	PWY-5538	pyruvate fermentation to acetate VI
RPIT_RS09770	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS09770	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS09770	PWY-6728	methylaspartate cycle
RPIT_RS09770	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS09770	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_RS09775	PWY-5392	reductive TCA cycle II
RPIT_RS09775	PWY-5537	pyruvate fermentation to acetate V
RPIT_RS09775	PWY-5538	pyruvate fermentation to acetate VI
RPIT_RS09775	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS09775	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS09775	PWY-6728	methylaspartate cycle
RPIT_RS09775	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS09775	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_RS09830	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS09835	PWY-6936	seleno-amino acid biosynthesis
RPIT_RS09850	PWY-3461	L-tyrosine biosynthesis II
RPIT_RS09850	PWY-3462	L-phenylalanine biosynthesis II
RPIT_RS09850	PWY-6120	L-tyrosine biosynthesis III
RPIT_RS09850	PWY-6627	salinosporamide A biosynthesis
RPIT_RS09850	PWY-7626	bacilysin biosynthesis
RPIT_RS09860	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
RPIT_RS09860	PWY-6596	adenosine nucleotides degradation I
RPIT_RS09860	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS09880	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
RPIT_RS09945	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
RPIT_RS09945	PWY-5368	dimorphecolate biosynthesis
RPIT_RS09945	PWY-5995	linoleate biosynthesis I (plants)
RPIT_RS09945	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
RPIT_RS09945	PWY-6803	phosphatidylcholine acyl editing
RPIT_RS09945	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
RPIT_RS09945	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
RPIT_RS09945	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
RPIT_RS09945	PWY-7470	phosphatidylcholine biosynthesis VII
RPIT_RS09945	PWY-7618	ricinoleate biosynthesis
RPIT_RS09955	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
RPIT_RS09955	PWY-5368	dimorphecolate biosynthesis
RPIT_RS09955	PWY-5995	linoleate biosynthesis I (plants)
RPIT_RS09955	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
RPIT_RS09955	PWY-6803	phosphatidylcholine acyl editing
RPIT_RS09955	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
RPIT_RS09955	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
RPIT_RS09955	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
RPIT_RS09955	PWY-7470	phosphatidylcholine biosynthesis VII
RPIT_RS09955	PWY-7618	ricinoleate biosynthesis
RPIT_RS09985	PWY-6938	NADH repair
RPIT_RS09990	PWY-6012	acyl carrier protein metabolism I
RPIT_RS09990	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
RPIT_RS09995	PWY-6749	CMP-legionaminate biosynthesis I
RPIT_RS10000	PWY-3961	phosphopantothenate biosynthesis II
RPIT_RS10065	PWY-2941	L-lysine biosynthesis II
RPIT_RS10065	PWY-2942	L-lysine biosynthesis III
RPIT_RS10065	PWY-5097	L-lysine biosynthesis VI
RPIT_RS10075	PWY-622	starch biosynthesis
RPIT_RS10080	PWY-622	starch biosynthesis
RPIT_RS10145	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS10145	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS10145	PWY-5744	glyoxylate assimilation
RPIT_RS10145	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS10145	PWY-6679	jadomycin biosynthesis
RPIT_RS10145	PWY-6722	candicidin biosynthesis
RPIT_RS10145	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_RS10150	PWY-6339	syringate degradation
RPIT_RS10160	PWY-6339	syringate degradation
RPIT_RS10185	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS10185	PWY-5723	Rubisco shunt
RPIT_RS10185	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_RS10185	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_RS10185	PWY-6901	superpathway of glucose and xylose degradation
RPIT_RS10185	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS10245	PWY-6936	seleno-amino acid biosynthesis
RPIT_RS10245	PWY-7274	D-cycloserine biosynthesis
RPIT_RS10255	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
RPIT_RS10255	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
RPIT_RS10255	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
RPIT_RS10255	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
RPIT_RS10285	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RPIT_RS10285	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_RS10605	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS10605	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_RS10605	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RPIT_RS10605	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS10605	PWY-5723	Rubisco shunt
RPIT_RS10605	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS10605	PWY-6886	1-butanol autotrophic biosynthesis
RPIT_RS10605	PWY-6901	superpathway of glucose and xylose degradation
RPIT_RS10605	PWY-7003	glycerol degradation to butanol
RPIT_RS10605	PWY-7124	ethylene biosynthesis V (engineered)
RPIT_RS10605	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
RPIT_RS10625	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
RPIT_RS10645	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_RS10645	PWY-5667	CDP-diacylglycerol biosynthesis I
RPIT_RS10645	PWY-6453	stigma estolide biosynthesis
RPIT_RS10645	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
RPIT_RS10645	PWY-7587	oleate biosynthesis III (cyanobacteria)
RPIT_RS10700	PWY-2582	brassinosteroid biosynthesis II
RPIT_RS10700	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
RPIT_RS10700	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
RPIT_RS10700	PWY-6948	sitosterol degradation to androstenedione
RPIT_RS10700	PWY-699	brassinosteroid biosynthesis I
RPIT_RS10700	PWY-7299	progesterone biosynthesis
RPIT_RS10780	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
RPIT_RS10785	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
RPIT_RS10785	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
RPIT_RS10795	PWY-6683	sulfate reduction III (assimilatory)
RPIT_RS10850	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS10865	PWY-2201	folate transformations I
RPIT_RS10870	PWY-822	fructan biosynthesis
RPIT_RS10930	PWY-6823	molybdenum cofactor biosynthesis
RPIT_RS10960	PWY-3801	sucrose degradation II (sucrose synthase)
RPIT_RS10960	PWY-6527	stachyose degradation
RPIT_RS10960	PWY-7238	sucrose biosynthesis II
RPIT_RS10960	PWY-7343	UDP-glucose biosynthesis
RPIT_RS10965	PWY-6523	nitrite-dependent anaerobic methane oxidation
RPIT_RS10965	PWY-6748	nitrate reduction VII (denitrification)
RPIT_RS10965	PWY-7084	nitrifier denitrification
RPIT_RS11025	PWY-6906	chitin derivatives degradation
RPIT_RS11025	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
RPIT_RS11025	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
RPIT_RS11045	PWY-5750	itaconate biosynthesis
RPIT_RS11045	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS11045	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
RPIT_RS11075	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
RPIT_RS11075	PWY-6855	chitin degradation I (archaea)
RPIT_RS11075	PWY-6906	chitin derivatives degradation
RPIT_RS11100	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
RPIT_RS11120	PWY-3861	mannitol degradation II
RPIT_RS11120	PWY-3881	mannitol biosynthesis
RPIT_RS11120	PWY-5659	GDP-mannose biosynthesis
RPIT_RS11120	PWY-6992	1,5-anhydrofructose degradation
RPIT_RS11120	PWY-7456	mannan degradation
RPIT_RS11120	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
RPIT_RS11120	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
RPIT_RS11180	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_RS11180	PWY-181	photorespiration
RPIT_RS11180	PWY-2161	folate polyglutamylation
RPIT_RS11180	PWY-2201	folate transformations I
RPIT_RS11180	PWY-3661	glycine betaine degradation I
RPIT_RS11180	PWY-3661-1	glycine betaine degradation II (mammalian)
RPIT_RS11180	PWY-3841	folate transformations II
RPIT_RS11180	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_RS11195	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS11200	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS11230	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_RS11230	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS11235	PWY-1622	formaldehyde assimilation I (serine pathway)
RPIT_RS11235	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS11245	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
RPIT_RS11245	PWY-622	starch biosynthesis
RPIT_RS11270	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS11270	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS11270	PWY-5744	glyoxylate assimilation
RPIT_RS11270	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS11270	PWY-6679	jadomycin biosynthesis
RPIT_RS11270	PWY-6722	candicidin biosynthesis
RPIT_RS11270	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_RS11340	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
RPIT_RS11340	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
RPIT_RS11365	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS11365	PWY-5723	Rubisco shunt
RPIT_RS11460	PWY-1042	glycolysis IV (plant cytosol)
RPIT_RS11460	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS11460	PWY-5484	glycolysis II (from fructose 6-phosphate)
RPIT_RS11460	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
RPIT_RS11460	PWY-7385	1,3-propanediol biosynthesis (engineered)
RPIT_RS11500	PWY-5686	UMP biosynthesis
RPIT_RS11565	PWY-3861	mannitol degradation II
RPIT_RS11565	PWY-3881	mannitol biosynthesis
RPIT_RS11565	PWY-5659	GDP-mannose biosynthesis
RPIT_RS11565	PWY-6992	1,5-anhydrofructose degradation
RPIT_RS11565	PWY-7456	mannan degradation
RPIT_RS11565	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
RPIT_RS11565	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
RPIT_RS11695	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
RPIT_RS11695	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
RPIT_RS11740	PWY-6897	thiamin salvage II
RPIT_RS11740	PWY-7356	thiamin salvage IV (yeast)
RPIT_RS11740	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_RS11745	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
RPIT_RS11745	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
RPIT_RS11745	PWY-6897	thiamin salvage II
RPIT_RS11745	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
RPIT_RS11745	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
RPIT_RS11745	PWY-7356	thiamin salvage IV (yeast)
RPIT_RS11745	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_RS11750	PWY-6910	hydroxymethylpyrimidine salvage
RPIT_RS11750	PWY-7356	thiamin salvage IV (yeast)
RPIT_RS11750	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
RPIT_RS11780	PWY-5941	glycogen degradation II (eukaryotic)
RPIT_RS11780	PWY-6731	starch degradation III
RPIT_RS11780	PWY-6737	starch degradation V
RPIT_RS11780	PWY-7238	sucrose biosynthesis II
RPIT_RS11805	PWY-5481	pyruvate fermentation to lactate
RPIT_RS11805	PWY-6901	superpathway of glucose and xylose degradation
RPIT_RS12065	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
RPIT_RS12110	PWY-2941	L-lysine biosynthesis II
RPIT_RS12110	PWY-2942	L-lysine biosynthesis III
RPIT_RS12110	PWY-5097	L-lysine biosynthesis VI
RPIT_RS12110	PWY-6559	spermidine biosynthesis II
RPIT_RS12110	PWY-6562	norspermidine biosynthesis
RPIT_RS12110	PWY-7153	grixazone biosynthesis
RPIT_RS12165	PWY-7183	pyrimidine nucleobases salvage I
RPIT_RS12175	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
RPIT_RS12250	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
RPIT_RS12250	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
RPIT_RS12250	PWY-7242	D-fructuronate degradation
RPIT_RS12250	PWY-7310	D-glucosaminate degradation
RPIT_RS12250	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
RPIT_RS12295	PWY-2941	L-lysine biosynthesis II
RPIT_RS12295	PWY-2942	L-lysine biosynthesis III
RPIT_RS12295	PWY-5097	L-lysine biosynthesis VI
RPIT_RS12335	PWY-5350	thiosulfate disproportionation III (rhodanese)
RPIT_RS12405	PWY-5530	sorbitol biosynthesis II
RPIT_RS12405	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
RPIT_RS12485	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS12485	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS12485	PWY-6728	methylaspartate cycle
RPIT_RS12485	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_RS12535	PWY-3221	dTDP-L-rhamnose biosynthesis II
RPIT_RS12535	PWY-6808	dTDP-D-forosamine biosynthesis
RPIT_RS12535	PWY-6942	dTDP-D-desosamine biosynthesis
RPIT_RS12535	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RPIT_RS12535	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RPIT_RS12535	PWY-6974	dTDP-L-olivose biosynthesis
RPIT_RS12535	PWY-6976	dTDP-L-mycarose biosynthesis
RPIT_RS12535	PWY-7104	dTDP-L-megosamine biosynthesis
RPIT_RS12535	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RPIT_RS12535	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RPIT_RS12535	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RPIT_RS12535	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RPIT_RS12535	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RPIT_RS12535	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RPIT_RS12535	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RPIT_RS12535	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RPIT_RS12535	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RPIT_RS12535	PWY-7688	RPIT_RS12535
RPIT_RS12540	PWY-3221	dTDP-L-rhamnose biosynthesis II
RPIT_RS12540	PWY-6808	dTDP-D-forosamine biosynthesis
RPIT_RS12540	PWY-6942	dTDP-D-desosamine biosynthesis
RPIT_RS12540	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
RPIT_RS12540	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
RPIT_RS12540	PWY-6974	dTDP-L-olivose biosynthesis
RPIT_RS12540	PWY-6976	dTDP-L-mycarose biosynthesis
RPIT_RS12540	PWY-7104	dTDP-L-megosamine biosynthesis
RPIT_RS12540	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
RPIT_RS12540	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
RPIT_RS12540	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
RPIT_RS12540	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
RPIT_RS12540	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
RPIT_RS12540	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
RPIT_RS12540	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
RPIT_RS12540	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
RPIT_RS12540	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
RPIT_RS12540	PWY-7688	RPIT_RS12540
RPIT_RS12610	PWY-5958	acridone alkaloid biosynthesis
RPIT_RS12610	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
RPIT_RS12610	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
RPIT_RS12650	PWY-3121	linamarin degradation
RPIT_RS12650	PWY-5176	coumarin biosynthesis (via 2-coumarate)
RPIT_RS12650	PWY-6002	lotaustralin degradation
RPIT_RS12650	PWY-6788	cellulose degradation II (fungi)
RPIT_RS12650	PWY-7089	taxiphyllin bioactivation
RPIT_RS12650	PWY-7091	linustatin bioactivation
RPIT_RS12650	PWY-7092	neolinustatin bioactivation
RPIT_RS12680	PWY-5316	nicotine biosynthesis
RPIT_RS12680	PWY-7342	superpathway of nicotine biosynthesis
RPIT_RS12685	PWY-5316	nicotine biosynthesis
RPIT_RS12685	PWY-7342	superpathway of nicotine biosynthesis
RPIT_RS12690	PWY-5316	nicotine biosynthesis
RPIT_RS12690	PWY-5381	pyridine nucleotide cycling (plants)
RPIT_RS12690	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
RPIT_RS12690	PWY-7342	superpathway of nicotine biosynthesis
RPIT_RS12695	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
RPIT_RS12695	PWY-5723	Rubisco shunt
RPIT_RS12800	PWY-5386	methylglyoxal degradation I
RPIT_RS12840	PWY-5392	reductive TCA cycle II
RPIT_RS12840	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_RS12840	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS12840	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS12840	PWY-6728	methylaspartate cycle
RPIT_RS12840	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS12840	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_RS12840	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_RS12875	PWY-4621	arsenate detoxification II (glutaredoxin)
RPIT_RS12930	PWY-6558	heparan sulfate biosynthesis (late stages)
RPIT_RS12945	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
RPIT_RS12945	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
RPIT_RS12945	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
RPIT_RS12985	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
RPIT_RS13040	PWY-4261	glycerol degradation I
RPIT_RS13070	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
RPIT_RS13075	PWY-5839	menaquinol-7 biosynthesis
RPIT_RS13075	PWY-5844	menaquinol-9 biosynthesis
RPIT_RS13075	PWY-5849	menaquinol-6 biosynthesis
RPIT_RS13075	PWY-5890	menaquinol-10 biosynthesis
RPIT_RS13075	PWY-5891	menaquinol-11 biosynthesis
RPIT_RS13075	PWY-5892	menaquinol-12 biosynthesis
RPIT_RS13075	PWY-5895	menaquinol-13 biosynthesis
RPIT_RS13095	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
RPIT_RS13095	PWY-6174	mevalonate pathway II (archaea)
RPIT_RS13095	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
RPIT_RS13095	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
RPIT_RS13095	PWY-7102	bisabolene biosynthesis
RPIT_RS13095	PWY-7391	isoprene biosynthesis II (engineered)
RPIT_RS13095	PWY-7524	mevalonate pathway III (archaea)
RPIT_RS13095	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS13095	PWY-922	mevalonate pathway I
RPIT_RS13160	PWY-6527	stachyose degradation
RPIT_RS13170	PWY-4261	glycerol degradation I
RPIT_RS13410	PWY-4261	glycerol degradation I
RPIT_RS13410	PWY-6118	glycerol-3-phosphate shuttle
RPIT_RS13410	PWY-6952	glycerophosphodiester degradation
RPIT_RS13450	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
RPIT_RS13450	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
RPIT_RS13550	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
RPIT_RS13775	PWY-6891	thiazole biosynthesis II (Bacillus)
RPIT_RS13775	PWY-6892	thiazole biosynthesis I (E. coli)
RPIT_RS13775	PWY-7560	methylerythritol phosphate pathway II
RPIT_RS13970	PWY-5392	reductive TCA cycle II
RPIT_RS13970	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
RPIT_RS13970	PWY-5690	TCA cycle II (plants and fungi)
RPIT_RS13970	PWY-5913	TCA cycle VI (obligate autotrophs)
RPIT_RS13970	PWY-6728	methylaspartate cycle
RPIT_RS13970	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
RPIT_RS13970	PWY-7254	TCA cycle VII (acetate-producers)
RPIT_RS13970	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
RPIT_RS13995	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS13995	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS13995	PWY-5744	glyoxylate assimilation
RPIT_RS13995	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS13995	PWY-6679	jadomycin biosynthesis
RPIT_RS13995	PWY-6722	candicidin biosynthesis
RPIT_RS13995	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_RS14135	PWY-5057	L-valine degradation II
RPIT_RS14135	PWY-5076	L-leucine degradation III
RPIT_RS14135	PWY-5078	L-isoleucine degradation II
RPIT_RS14135	PWY-5101	L-isoleucine biosynthesis II
RPIT_RS14135	PWY-5103	L-isoleucine biosynthesis III
RPIT_RS14135	PWY-5104	L-isoleucine biosynthesis IV
RPIT_RS14135	PWY-5108	L-isoleucine biosynthesis V
RPIT_RS14160	PWY-2201	folate transformations I
RPIT_RS14160	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_RS14225	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
RPIT_RS14225	PWY-6549	L-glutamine biosynthesis III
RPIT_RS14225	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
RPIT_RS14225	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
RPIT_RS14295	PWY-5482	pyruvate fermentation to acetate II
RPIT_RS14295	PWY-5485	pyruvate fermentation to acetate IV
RPIT_RS14295	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_RS14300	PWY-1281	sulfoacetaldehyde degradation I
RPIT_RS14300	PWY-5482	pyruvate fermentation to acetate II
RPIT_RS14300	PWY-5485	pyruvate fermentation to acetate IV
RPIT_RS14300	PWY-5497	purine nucleobases degradation II (anaerobic)
RPIT_RS14300	PWY-6637	sulfolactate degradation II
RPIT_RS14540	PWY-6614	tetrahydrofolate biosynthesis
RPIT_RS14565	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
RPIT_RS14585	PWY-4381	fatty acid biosynthesis initiation I
RPIT_RS14585	PWY-5743	3-hydroxypropanoate cycle
RPIT_RS14585	PWY-5744	glyoxylate assimilation
RPIT_RS14585	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
RPIT_RS14585	PWY-6679	jadomycin biosynthesis
RPIT_RS14585	PWY-6722	candicidin biosynthesis
RPIT_RS14585	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
RPIT_RS14615	PWY-4261	glycerol degradation I
RPIT_RS14680	PWY-3821	galactose degradation III
RPIT_RS14680	PWY-6317	galactose degradation I (Leloir pathway)
RPIT_RS14680	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
RPIT_RS14680	PWY-6527	stachyose degradation
RPIT_RS14680	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
RPIT_RS14680	PWY-7344	UDP-D-galactose biosynthesis
RPIT_RS14755	PWY-6683	sulfate reduction III (assimilatory)
