LOCUS NC_038788 8467 bp RNA linear VRL 24-AUG-2018 DEFINITION Tetterwort vein chlorosis virus segment RNA1, complete sequence. ACCESSION NC_038788 VERSION NC_038788.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Tetterwort vein chlorosis virus ORGANISM Tetterwort vein chlorosis virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Crinivirus; unclassified Crinivirus. REFERENCE 1 (bases 1 to 8467) AUTHORS Zhao,F., Yoo,R.H., Lim,S., Igori,D., Lee,S.H. and Moon,J.S. TITLE Nucleotide sequence and genome organization of Tetterwort vein chlorosis virus, a new member of the genus Crinivirus JOURNAL Unpublished REFERENCE 2 (bases 1 to 8467) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 8467) AUTHORS Zhao,F., Yoo,R.H., Lim,S., Igori,D., Lee,S.H. and Moon,J.S. TITLE Direct Submission JOURNAL Submitted (20-MAR-2015) Plant Systems Engineering Research Center, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahangno, Yuseong-Gu, Daejeon 305-806, South Korea COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KR002686. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..8467 /organism="Tetterwort vein chlorosis virus" /mol_type="genomic RNA" /isolate="Yesan" /host="Tetterwort" /db_xref="taxon:1712389" /segment="RNA1" /country="South Korea" /collection_date="04-May-2011" gene 67..6045 /locus_tag="D1S64_s1gp1" /db_xref="GeneID:37619171" CDS 67..6045 /locus_tag="D1S64_s1gp1" /note="contains methyltransferase and RNA helicase 1 motifs" /codon_start=1 /product="ORF1a polyprotein" /protein_id="YP_009507960.1" /db_xref="GeneID:37619171" /translation="MASTIVSRTHPLLPRGMAIPPCGVAYFLKCVPSYWRTSIKQNKQ NYKKSKNLKTNKTRRVTQTKLSRTTPAAPFATHNIVLKRSFKERLVYPGINPVNVKIL DNGNAVFIPISRVDVNRRLNVLRQLCNIPHCTFKRLPRAVVYKLGYNVDKINETIDDF LNREVGALPSETVEPDTVIQGKTRFNDGYKLFHFISKSYLDIYFLFNNYCDSTSHLKF RMQYKQRPDGTIAGTKVSTLIHGIAAGSHLYCDDFNLKARLDNRQFQAKMILLSILDR IPDYAEKFQVYLGAEFRKRVPRARDIIFATGRRMEEAGKRRMRNSAVGAEPKRVSTTD TKKTTVQVIWSADKRQREFFVVKIEGKEDIKIYNNKFCIANMYNATLNKGKFFIHPKC YTPFLTRFGEHTREYCWINAFALANMQMPRELVPYPTLKYGYLLGCGLGKVLRGRVMV IGPNLCHFDKSFNIKNATIPYFMSMGVKLENDVDGWSKNIEVLFDDISAGIITQTNLR SENRLMDTITARLSDRINQQCSKKKDLIISTCLSSKDKKELAEIFPEINFDFTDSNFS SHALATAMRHSENYLMAKRHNFNSFVDIGGDVVHYLHELVSNVHVCSPVVDIKDAHRH MTRSNQLDRMKGMNESITLCDNLAQNCCIEMQNLIAVQVYDMTLVDMAKALQSHKSKR LDFSVIIPPEIVEDDCDVSIFSDSVRVTCEGERVRYDYGDAGESYYHDRDNLIDILKT QIFEVNGVVYKKTLECSRKQLHFFSVVPCLDIANGKYKVTSHYSKSETDKLLVRVPVE NEDGEKEHIKIKMDKAAFHHLVEYSMNTVLRLDEKAFEYLLSQYRARKSISIKGGRVT QMSGDLPPKVVSGFIGAVIGYGLRLREHAHKSAKLSYHEFYTPSIYRILCKIIARILQ RLYNWTHDKLISVMKCCLNKDFFNEVTVNQCGVYEFQGEYSFTQHVNITGQDGNSRIL SSSFERFKKYNETMYDNLDAITADNQQLFSKDPNEILSELFELGGGRTNDRFIKKGCV YISELMYIKIHKFIFNCTKSLKSAKTYTNFICGAFEFFKRHSISIVGFVKDFLVSLFR SITSGVKQFSKGQFDAVKSAALATKDFLKNLNADWEEAVNVALKKERTDSYTNPSDIS KSEGSSVESHEEMQRTVEEDLASLGGGGRTIVDRGINWCRRTKFFSNLLRSIKSKLLN LLRDISKFFSNMRINARWLKNRLYSMIERLFDEENFSVVISGVCFTVTSLLFMVLTGG YNPLRFFIALFFLMSVRIFGYEKAITGGGIGTSIICHSLAGFGWLGPMTIPLKAVVFK CLESRLKRYVRRFKCLERTSDLMVAKDVLSRRYYNFLTIQNVRLLCIFLICRATIPPR FSLVMLMIVIGCYDYAQYLSTYCVKANVFISYQSRLMRTTPSKRYKVLKEIFVSKFNR NNIKVEEEKVEDSDVDFASSAQMMKVGSRMRDSDVEVEFDYDGSYVEKSKIHNTWGSE CSTSKAADRVDGLIFSTTRPTEDRTQINCVVHFPISHTMLDYPMTNTFDFNPTGVDEI DCVCEFYYLEAKKLHTEIGKLDNAVRICLENQLQEKRTRDVVWHLRNMCDDASLYVSN GGDEWYRLKKGDKGSCVIEGQCKITLDNALVDFNTRTTGLQLCSDEMIGLFANKKCLA LEQIIKRNRDKFTDVRNRDVVFFNKPPGAGKTTTIVRNMLDDVKARVTSIALTYTSNG KKEIIDKLKKQGVPNAQTMVFTYDSVLVNGTEAVVDKIYCDEIFMVHAGEWIAIMSLF KTKFVRCYGDRNQIPFINRVPHTLCVRHKDIYLTFKTIDDNVSYRCPVDVCHLLSTLT DAKGDLLYPKGVYAAGENRKILRSIEVEPFNSIDELDHDFEGKSITFTRPEREDVNVS CQKMTRKQISVQTVHEVQGGTFPKVYLYRLRKYDNPLYEDINQFVVSISRHTELMRYR VLSDKMFDKISTSIGALNKVQDYVLKEFMFKQRV" gene 6044..7561 /locus_tag="D1S64_s1gp2" /db_xref="GeneID:37619168" CDS <6044..7561 /locus_tag="D1S64_s1gp2" /note="RNA dependent RNA polymerase; putatively translated via a +1 frameshift mechanism characteristic of the Closteroviridae" /codon_start=1 /product="ORF1b" /protein_id="YP_009507961.1" /db_xref="GeneID:37619168" /translation="DTYTWVVDVQTHGQTFSRPSASHLQSINDFMSLVNTNLSAYDYI HRTLLFEYHDFDLPHLDDVDISLDKSKTYLPGDYIVSNLLGKGERARPNTWKQALISL SKRNFSAPRVNEKMDILATAERLCAGVFKAFNFSKLLENYDPVLPDIFKIDDWFGSRD GNKFGRIKRSMNHTLMVDQFQPMKFMIKGDMKPKMDTSSYATYDPPSNIIYYQHIINV YYSPLFLEIFDRITYCLSHKVILYSGMNLQDLASLISSQLKMPLDYYHTTEIDFRMFD KSQGVLFKTYEELIYKCFKFSEDLYENIKMTEYFTRFKGENGVSGDLGAQRRTGSPNT WLSNTLVTMGILLSQYDLDDIELILISGDDSLIFSKNPLPNVTAEINRDYGFEAKMMM NSVPYFCSKFILQDGGKLKVVPDAQRMFEKLSTPIRLRDFEEGTVLRERFTSYKDLMV EYDSDTTCLLVDSLMAKRHGIPPMSSYAALCFIHCMFANVVAFKRLFDDRFSLNI" gene 7577..7738 /locus_tag="D1S64_s1gp3" /db_xref="GeneID:37619169" CDS 7577..7738 /locus_tag="D1S64_s1gp3" /note="ORF2" /codon_start=1 /product="P6a protein" /protein_id="YP_009507962.1" /db_xref="GeneID:37619169" /translation="MRYDWLTYSCNIDSPLYSGPKCEVDAIVFWIVLSLCIILIVTGI YICVLRCRD" gene 7741..8232 /locus_tag="D1S64_s1gp4" /db_xref="GeneID:37619170" CDS 7741..8232 /locus_tag="D1S64_s1gp4" /note="ORF3" /codon_start=1 /product="P19 protein" /protein_id="YP_009507963.1" /db_xref="GeneID:37619170" /translation="MAEIKHIIDGVYDLVKAFLNNGTFIENYYSIINYASAVEDFLSK SKKVKIADVPMLKTGFRVCRDNGLPTDFLKNLFVKEYNREFLLHDVKLYKVMCHIVYK MLCDDDFFMFLSDFYSDGEVFCVLQDWTTGLTIRYNESNGHLNLVNEEFLTEPFKIFN DMI" ORIGIN 1 ggaaaatact ttccttgtgt taaagcgaga acgccgcagc acaattcacc tgccctctga 61 gatattatgg cctccaccat cgtgtctcgc actcacccac tccttccaag aggaatggct 121 attccaccat gtggcgtagc ctacttcttg aaatgtgttc catcatattg gcgcacatca 181 ataaaacaaa acaaacaaaa ctacaaaaaa tcaaaaaacc taaaaacaaa taaaactcgg 241 cgagtaactc aaactaagct gagcagaact actccagctg cacctttcgc cacccataat 301 atagtattaa aaagatcctt taaggagaga ttagtatatc ccggtataaa cccggttaat 361 gtaaagatat tagataatgg taatgcagtt tttattccta tttctagagt agatgtaaat 421 agacgtctca atgttttgag acaattatgt aacatcccac actgcacgtt taaaagacta 481 cctagagcag ttgtatataa attgggatat aatgtagata aaataaatga aacaattgac 541 gacttcctta atcgtgaagt cggagcctta ccatcggaaa cagtcgaacc cgacacggtc 601 atccagggca agactaggtt caatgatggt tacaagttgt ttcattttat tagtaaaagt 661 tatttagata tttattttct ttttaataac tattgtgact ctaccagtca cctgaagttc 721 cgcatgcagt ataaacagag acctgacggg actattgctg ggactaaagt cagtactctc 781 atccacggta ttgccgccgg gtctcatctc tactgtgacg acttcaacct aaaagctcgt 841 ctggataacc ggcaattcca ggcaaagatg attctactgt cgattctcga ccgtattcct 901 gattatgctg agaaattcca agtttacctt ggcgcggaat ttcgtaagcg cgttcctcgg 961 gcaagagaca tcatctttgc taccgggcgt aggatggaag aggccggaaa acgaagaatg 1021 agaaactctg cggttggggc cgaaccgaag agagtttcta ccactgacac gaagaagacc 1081 actgttcaag tcatttggtc cgctgataaa cgccaaaggg aattcttcgt cgtaaaaatt 1141 gaggggaaag aagatattaa aatatataat aataaatttt gcattgccaa tatgtacaat 1201 gccaccctca ataagggaaa attttttatt cacccgaagt gttacacccc tttcctaact 1261 aggttcggtg aacacactag ggagtactgt tggattaacg ccttcgccct ggccaacatg 1321 cagatgccca gagaattagt tccctaccca accttaaaat acgggtattt actaggctgt 1381 gggttgggta aggtcttaag aggcagggtg atggtgatcg gcccgaactt atgccatttt 1441 gacaaatctt tcaacataaa gaatgcgacc ataccatact ttatgagtat gggtgtgaag 1501 ttagaaaatg acgttgatgg atggtcaaaa aacatcgaag tgcttttcga tgacattagc 1561 gccgggatta tcactcagac aaatctgcgc tctgagaaca ggttgatgga tactatcaca 1621 gcgagattgt ccgaccgcat caaccaacaa tgctcaaaaa agaaagatct tatcatatcc 1681 acttgtttaa gcagtaaaga taagaaagaa cttgcagaaa tctttccaga gatcaatttt 1741 gactttactg attcaaactt ctcttctcat gccttagcta cggcgatgag gcattctgaa 1801 aattatttaa tggctaaaag gcataatttt aatagctttg tagacattgg tggtgacgtt 1861 gtgcattact tacacgaatt agtcagtaat gtacatgtct gctcaccagt tgttgacata 1921 aaagatgccc atcgccatat gacgagaagt aatcaattgg ataggatgaa aggcatgaac 1981 gaaagcatta cactttgcga caatctcgct cagaactgct gtattgaaat gcagaattta 2041 atagcagttc aagtttacga catgactcta gtggacatgg ctaaagcgct acagtctcac 2101 aagtcgaaga gattagattt ctccgtcatc atacccccag agatagtgga ggatgactgt 2161 gatgtttcga tcttctccga ctctgtcaga gtaacttgcg agggcgagcg cgtccgctat 2221 gattatggtg atgctggtga gtcgtattat catgatagag acaacctcat tgacatttta 2281 aaaactcaga tttttgaagt gaatggggtc gtttacaaga agaccttaga atgttccaga 2341 aaacagttgc attttttctc tgttgttcca tgtttagaca ttgctaatgg aaaatataag 2401 gtcacgtctc attacagtaa atctgagact gacaaattac ttgtcagagt gcctgtcgag 2461 aacgaagatg gtgagaagga gcacataaaa ataaaaatgg ataaagcagc ttttcaccat 2521 ctagtggaat actctatgaa cacggtattg aggttggatg aaaaagcttt tgaatatctt 2581 ttatctcaat acagagctcg aaagtccatc tcaataaaag gtggtagagt gacccagatg 2641 tccggcgact taccacctaa agtcgtctcc ggttttattg gtgccgtgat cggatatgga 2701 ctgagattga gagagcatgc tcacaaatcg gcgaaactca gttaccacga gttctataca 2761 ccatcaattt ataggatcct ttgtaagata attgcaagaa ttttgcagag gctttataat 2821 tggactcatg acaaactgat atccgtgatg aagtgctgtt taaacaaaga tttctttaat 2881 gaagttacgg tcaatcaatg cggtgtatat gaatttcaag gtgaatactc tttcactcaa 2941 cacgtaaata tcaccggtca ggacggaaac agtaggatcc tctcgtcgtc ttttgagaga 3001 tttaaaaaat acaacgagac gatgtatgat aacttggatg ctatcaccgc agacaatcaa 3061 cagctgtttt ccaaagaccc aaatgaaatt ttgagtgaac tttttgagtt aggaggtggg 3121 agaacaaacg accgatttat aaagaaagga tgcgtttata tctcagagtt gatgtacata 3181 aagattcata aattcatctt taactgtacc aagtcgctta agtccgcgaa aacttacacg 3241 aatttcatat gcggtgcttt cgaattcttt aaaaggcaca gtatatctat cgtaggtttc 3301 gtgaaagact ttctggtctc tctcttcaga tcaataacct cgggagttaa gcagttctcg 3361 aaaggtcaat ttgatgctgt taaaagcgcg gctttggcaa cgaaagactt tctcaagaat 3421 ttaaatgcag attgggagga agctgtgaat gtggccttaa agaaagagag gactgattct 3481 tatacgaatc ctagcgatat ctcaaaaagt gaaggatctt ctgttgaatc tcacgaggag 3541 atgcagagaa cggtggaaga agatctagct tccttggggg gaggaggaag aaccattgtt 3601 gacagaggta tcaactggtg ccggagaaca aaatttttct ccaatttgtt acgttccatc 3661 aaatcgaaac tcctcaattt actgcgtgat ataagtaagt tctttagtaa catgcgcatc 3721 aacgcacgat ggctaaaaaa ccgtttgtac agtatgattg agaggctgtt tgatgaagaa 3781 aatttttctg tggtgatatc tggtgtatgt ttcacagtta catcccttct cttcatggtt 3841 ttaactggag ggtataatcc tttgagattc ttcattgctt tattcttcct tatgtccgtg 3901 agaatctttg gatatgagaa ggctatcact ggcggtggga ttggaacctc cataatttgt 3961 cactccctag caggttttgg atggttggga ccaatgacga tacctctgaa agcggtggtt 4021 tttaaatgtt tggaatccag attaaaaagg tacgtgagga ggttcaaatg tcttgaacgc 4081 acatcggacc tgatggtagc gaaagatgtc ttgagcagac gttactacaa ttttttaact 4141 attcaaaacg tcaggttgct gtgcattttc ttaatatgta gggcgacgat tcccccaaga 4201 ttttctttag ttatgttgat gatagtgatt ggttgctacg attatgcaca atatttgtca 4261 acatactgtg ttaaggctaa cgttttcatc agttatcaaa gtcgactgat gaggactaca 4321 ccatctaaaa gatataaggt attaaaggag atttttgtct cgaaattcaa ccgaaataat 4381 atcaaagttg aggaagaaaa ggttgaagac tccgatgtgg actttgcctc atcagctcaa 4441 atgatgaaag ttggtagtcg aatgagagat agtgacgttg aagtggaatt cgactatgat 4501 ggcagttacg tggaaaagtc aaaaatacac aacacctggg gctctgaatg ttcaacgtcg 4561 aaagctgctg atagggttga tgggttgatc ttttcaacca ccagacctac agaggaccgg 4621 acccaaatca attgtgtagt acatttcccg atcagtcaca cgatgctcga ctacccgatg 4681 acaaatactt tcgactttaa tccaaccggg gtcgatgaga tcgactgtgt gtgtgagttt 4741 tactatctcg aagctaagaa gttacataca gagataggta aacttgataa cgcggttcgg 4801 atatgcctcg agaaccaact ccaagaaaaa cgaacgagag atgtggtgtg gcatttaaga 4861 aatatgtgcg acgatgcatc cctttatgtg tcgaacggtg gcgatgaatg gtatcggttg 4921 aagaaaggtg ataaaggttc gtgtgtgatc gaggggcaat gtaagataac actcgacaac 4981 gcactcgttg attttaacac caggacaact gggttgcaat tgtgtagcga tgaaatgata 5041 ggtcttttcg ccaacaagaa atgcctcgca ttggagcaaa tcataaaacg caaccgtgat 5101 aaattcacag atgttagaaa tagggatgtg gtatttttca ataaaccacc tggtgctggt 5161 aagaccacta ctattgttag gaatatgttg gacgatgtga aagcaagagt cacgtcgata 5221 gccctaacat acacatcaaa tggtaagaag gaaataatcg acaaattgaa gaagcaagga 5281 gtcccaaacg cgcaaaccat ggtattcaca tacgactcag tgttggttaa tggtactgag 5341 gcggttgtgg ataagatcta ttgtgatgag atatttatgg tccacgccgg agaatggata 5401 gcgatcatgt ccttgtttaa aaccaaattt gtgagatgct atggggacag aaatcaaata 5461 ccatttatta acagagtacc tcacacctta tgcgtcagac acaaagacat ctatttgacg 5521 ttcaaaacta tagatgataa cgtgtcatac agatgtcccg tcgatgtgtg tcaccttctt 5581 tcgactctca cagatgcaaa aggtgacctg ctatatccta aaggtgttta cgcggcagga 5641 gagaatagaa aaatccttcg atcgattgag gttgaacctt tcaacagtat cgatgagttg 5701 gaccatgatt ttgaaggtaa gagtataact ttcactcgcc cggagagaga agatgtgaat 5761 gtgagctgcc agaagatgac gaggaagcag atatcggtcc aaacagtgca tgaagttcaa 5821 ggtggaactt tcccgaaggt gtatctatac aggcttagaa agtatgacaa tcctttgtat 5881 gaggacatca atcagttcgt ggtcagcata tccagacata cagaattgat gagatatagg 5941 gtgttatccg acaagatgtt tgacaaaatc agtacctcaa taggcgcctt gaataaagtt 6001 caagactacg tgttgaagga gtttatgttt aaacagcgcg tttgacactt atacgtgggt 6061 ggtcgatgtt caaacacatg gccagacttt tagtagacca tccgcgtcac atctccaatc 6121 aataaatgat ttcatgtcct tggtgaacac aaatcttagt gcttatgatt acattcacag 6181 gacactatta tttgaatatc atgattttga ccttcctcac ctagatgatg tagatatatc 6241 tttagataaa agtaagacct atcttcctgg tgattacatc gtctcaaatt tgttgggcaa 6301 aggtgagaga gcacgaccaa acacttggaa gcaagcctta atatctctga gtaagagaaa 6361 tttttccgct ccacgtgtga acgagaaaat ggatatccta gcaacggctg agcgattgtg 6421 tgcaggtgtt ttcaaggcct tcaatttctc caagttgtta gagaactatg atccagtgtt 6481 acctgatatt ttcaagatcg atgactggtt cggctctaga gatggtaata agttcgggcg 6541 cattaaaagg agtatgaatc acactttaat ggttgatcaa tttcaaccca tgaaattcat 6601 gataaaaggt gatatgaagc caaagatgga tacgtcgtca tatgcgactt acgacccgcc 6661 ctcaaatatc atctattacc aacatataat aaatgtgtac tactcaccct tattcttgga 6721 gatttttgat aggataacat actgcttgag ccacaaggta atcttatact caggtatgaa 6781 ccttcaagat ctagcttcac tcatatcatc tcaattaaaa atgccattag attactatca 6841 tacaactgag attgacttca ggatgtttga taaatctcaa ggtgtacttt ttaaaacata 6901 tgaggagttg atatataagt gcttcaagtt ttccgaggat ctgtacgaaa atatcaagat 6961 gacggaatac tttaccaggt ttaaagggga aaacggggtg tctggtgatt tgggtgctca 7021 gaggagaact ggctcgccaa acacttggct gtccaacact ttggtcacca tgggaatttt 7081 gttgtcacag tatgatctag atgacattga gctgattttg ataagtggtg acgacagttt 7141 aattttttcg aagaaccctt tgccaaacgt aactgctgaa ataaacagag actatggttt 7201 tgaggcaaaa atgatgatga atagtgtccc atatttttgc tcaaaattta ttcttcaaga 7261 cggcggtaag ttgaaggttg tcccagatgc gcagaggatg tttgaaaaat tgtcaacccc 7321 tatccgtcta agggatttcg aggagggcac ggttcttaga gaaaggttca cttcttataa 7381 ggatctgatg gttgaatacg attcggacac cacttgctta ttggttgatt cgttaatggc 7441 aaagaggcat ggtataccac cgatgagttc ttatgcggcc ctttgtttca ttcactgcat 7501 gtttgccaat gttgttgctt tcaaaagatt gtttgatgat aggttttcat tgaatatctg 7561 atattttgaa tggagcatgc ggtatgattg gttgacatat agctgtaata tcgacagccc 7621 attatattct ggccctaagt gtgaggttga tgccatcgta ttttggattg tattgtcatt 7681 gtgtataata ttgatagtaa caggtattta tatttgcgtt ctcaggtgtc gagattgagt 7741 atggctgaaa ttaagcacat tatagatggt gtatacgatc tcgtgaaagc ctttttaaat 7801 aatggtacat ttatagaaaa ctattattct attataaatt atgccagtgc tgttgaggat 7861 tttcttagca aaagtaagaa ggtgaagatc gctgatgtac ctatgctaaa aactggtttt 7921 cgtgtgtgca gggataatgg tctacccaca gactttctga aaaatttatt tgtcaaagaa 7981 tataataggg agttcctgtt acacgatgtc aagttgtaca aggtcatgtg ccatatagta 8041 tataagatgt tgtgtgatga cgacttcttc atgtttttga gtgattttta ctctgatggc 8101 gaagtgttct gtgtattgca agattggacg actggactca ccatacgtta taatgaatct 8161 aatggtcatc taaatttagt gaatgaagag ttcctaaccg aaccgttcaa aatctttaat 8221 gatatgattt aacttaattt tgaaagaaaa acaaaagaaa aacaaaaaca aaaataaaag 8281 ggtatttacg atatatgttt tgtatccttg agtcaaccac cggcgaatac gctggagagt 8341 ggtttgtaaa atctcgaaat taactatata tattaatagg aagattgaag taaattagta 8401 tagtcgaagt tctaaagtgt cctttttgga ccaccttgaa cttctagtta gtaaataaac 8461 taggtcc // LOCUS NC_038789 8113 bp RNA linear VRL 24-AUG-2018 DEFINITION Tetterwort vein chlorosis virus segment RNA2, complete sequence. ACCESSION NC_038789 VERSION NC_038789.1 DBLINK BioProject: PRJNA485481 KEYWORDS RefSeq. SOURCE Tetterwort vein chlorosis virus ORGANISM Tetterwort vein chlorosis virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Closteroviridae; Crinivirus; unclassified Crinivirus. REFERENCE 1 (bases 1 to 8113) AUTHORS Zhao,F., Yoo,R.H., Lim,S., Igori,D., Lee,S.H. and Moon,J.S. TITLE Nucleotide sequence and genome organization of Tetterwort vein chlorosis virus, a new member of the genus Crinivirus JOURNAL Unpublished REFERENCE 2 (bases 1 to 8113) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 8113) AUTHORS Zhao,F., Yoo,R.H., Lim,S., Igori,D., Lee,S.H. and Moon,J.S. TITLE Direct Submission JOURNAL Submitted (20-MAR-2015) Plant Systems Engineering Research Center, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahangno, Yuseong-Gu, Daejeon 305-806, South Korea COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KR002687. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..8113 /organism="Tetterwort vein chlorosis virus" /mol_type="genomic RNA" /isolate="Yesan" /host="Tetterwort" /db_xref="taxon:1712389" /segment="RNA2" /country="South Korea" /collection_date="04-May-2011" gene 125..358 /locus_tag="D1S64_s2gp1" /db_xref="GeneID:37619181" CDS 125..358 /locus_tag="D1S64_s2gp1" /note="P9a" /codon_start=1 /product="9.5-kDa protein" /protein_id="YP_009507964.1" /db_xref="GeneID:37619181" /translation="MLTMYRTHVIHLFPHGRIWFHEKSIPKQKQNKKQKTKTKQNISR RLYLKLNKFTVVFAHTFRARCLCAMFRHVSRER" gene 526..660 /locus_tag="D1S64_s2gp2" /db_xref="GeneID:37619173" CDS 526..660 /locus_tag="D1S64_s2gp2" /note="P5" /codon_start=1 /product="5.4-kDa protein" /protein_id="YP_009507965.1" /db_xref="GeneID:37619173" /translation="MFLSFCSFYIFYWLLSILKNFFLYSSLSRFSLLVRLISEWVGLL " gene 1331..3004 /locus_tag="D1S64_s2gp3" /db_xref="GeneID:37619174" CDS 1331..3004 /locus_tag="D1S64_s2gp3" /note="Hsp70h" /codon_start=1 /product="heat shock 70-kDa protein-like protein" /protein_id="YP_009507966.1" /db_xref="GeneID:37619174" /translation="MATAKAGLDFGTTFSTISAYVNGVMRVLKLNNTEFIPTCLAITN TGDVVVGGPAQVLESGELANCYFYDLKRWVGVDKINFSIIKNKIRPQYVAELKGNDVY LTGINRGYSCTYTVKQLILLYIETLVRLFSKVEGLNIVSLNVSVPADYKCKQRMFMKS VCDSLGFSLRRIINEPSAAAIYFVSKYPNYDAFLMYDLGGGTYDSSLIVKDGKYVTVA DTEGDSFLGGRDIDRSISKYIMKKYDLQHPLSADYLAAIKEDANSKGRESFNVMDVTG RVLNVKFTKDEMDKCIQSYSDRSLKILENMVLRNNVTSGALFLVGGSSLLEKIQRDVK SFAKTHNLTCIIDPDLRSAVSYGCSMSHAQEDSGNMTYIDCNSHPLMDITLFCGPRVI VRKPMAIPYTYMKEELVKSHYSTILNVYEGSDPFVLYNDWLISARLKTADYCKLGQTL VYMYRYNVDGILELLVRNKETGVESVLPNTFTLTEKIDKLKLTLTQLSNIDELATLIT ILGHFRPELKDLLTYVKTPTIFENKINSFTTPKALYQELITYNANFVNK" gene 3005..3169 /locus_tag="D1S64_s2gp4" /db_xref="GeneID:37619175" CDS 3005..3169 /locus_tag="D1S64_s2gp4" /note="P6b" /codon_start=1 /product="6.4-kDa protein" /protein_id="YP_009507967.1" /db_xref="GeneID:37619175" /translation="MGLIIVVYKFYCGVNIYYCSNNRDFVGDFEVVTTTELEKLVEIF ESFPFVRTTW" gene 3163..4716 /locus_tag="D1S64_s2gp5" /db_xref="GeneID:37619176" CDS 3163..4716 /locus_tag="D1S64_s2gp5" /note="P60" /codon_start=1 /product="59.7-kDa protein" /protein_id="YP_009507968.1" /db_xref="GeneID:37619176" /translation="MVSIMNNPQLLSAFQLLFKISNVEEKLRGLNDYMLQNVSKENNN VFTAISGRNPMKFDSTFTKRSGDVYFDKDDGKSIVKLILIYFYNVEPSLLTKTGYKPE SFFISDDWRASLLQWKKYIDKSMNDFLSDNKDIGCTYTEDNISKHYPNQSKSRLITLY RVCNSQNRLIPLQEFLEGKVKGFEINPKADVEAIGEGFSNNNLFRECVECFKDYMLLS SSQSGRAKVLVVKKFFDTYIDSLVGNQLMETVRDNPLVLAKFVKDFDEFTAEGHGFSN NFKAIEKLDKNFQKFCKDVFKLSTSLDRDTLFVKLPKDSVVDILGQPIILSNFIRRSS IPKPISNSSSLPHDIDICVSEGIVDFLKQFGIEDKVLILDTMLFVFAAMTTNKKIWNT PNKVSFSVDGKKISFLTTDFTGFIINLVRRFDPNYDTNNIIRQWANLRGNRALALFRM TGFKPQLFSTVPGILPWMRFDFFKLLSQQDLTDEEVQSLHTLRLMTEWKSNNSTFNEK NLLRWISRN" gene 4698..4943 /locus_tag="D1S64_s2gp6" /db_xref="GeneID:37619177" CDS 4698..4943 /locus_tag="D1S64_s2gp6" /note="P9b" /codon_start=1 /product="9.7-kDa protein" /protein_id="YP_009507969.1" /db_xref="GeneID:37619177" /translation="MDLTELIERYGPDRVEKYFSLYMKSKYQPGGTANLVLDVLNFYL LDLGLEKIDTGIIKEEISDFFFCIYHFYRNLNVFHRQ" gene 5055..5780 /locus_tag="D1S64_s2gp7" /db_xref="GeneID:37619178" CDS 5055..5780 /locus_tag="D1S64_s2gp7" /note="CP" /codon_start=1 /product="capsid protein" /protein_id="YP_009507970.1" /db_xref="GeneID:37619178" /translation="MDNKKEERNQFSDEETTPQTDSERGGGMKKRDNSMSVRDIISEE HMNPAKLSSISVYSNRGDTMTQDDEAKFEQCMNEFCKNLVAGEPTTEQFTAFYVSLVQ CWLNQSTSMKNMRQRNLQNTFKINDQKFTWRTMDFMNYVKGNLPHISNPFRQYARSHE KEIEILKSTGKVVCDHHLQAKHGVVSQYWNLPADYVNGSLINISDDDLAANLLMRCQA LKRNKVEKKIYNVSQLAPGGCSE" gene 5780..7204 /locus_tag="D1S64_s2gp8" /db_xref="GeneID:37619179" CDS 5780..7204 /locus_tag="D1S64_s2gp8" /note="CPm" /codon_start=1 /product="minor coat protein" /protein_id="YP_009507971.1" /db_xref="GeneID:37619179" /translation="MDLEDLFSEDKSELLVRANNDIWSQSVGMNLKNIRRLELRYKYG SGEMETNYILHLKFIIPDGNLIHEFSFNHPGSHKFKQTGGRFWSSAFDELEKCRPNKI GHLGHFSVVEEGDYYYLAVNGWRHVRVKKSHQPTDLIISLVNTDTSGILDPAVQYQSN FVKWNSLFSEITLNNVKSEIKAVTISMTRSNTGKRTDLKPAQGLDFENARRFSDLNVK EVGRDDDNNDNIKPPKPNIPDDNIKPKPKNDSINPPGPKPEGKGDEEGKDVDNSNVKP EPNLVVDPSTIIDVSNSISTRSKLRGVGRYALRYDVLESIMKKMIAYYVTMGFDDIQA KLIIYQFGVSFCTSKNSTADKGSHLLWDTKDGRVLQLKKCDHVRMLNRLSPEPCNVER LLLRSRSKEIFQLLKNGVLKTSLVHCKKRSLKPEWAYLACDFYDLSVLDLSESELLAL NSPALYVLLRNKHKRSIVNVNQLH" gene 7211..7900 /locus_tag="D1S64_s2gp9" /db_xref="GeneID:37619180" CDS 7211..7900 /locus_tag="D1S64_s2gp9" /note="P27" /codon_start=1 /product="26.9-kDa protein" /protein_id="YP_009507972.1" /db_xref="GeneID:37619180" /translation="MMEYPIEYARNDGGNNESLINIISHNFNSIVNIIENYCMYDVHV IDAAIETSHILINMCKTCSGEINLYSLNNKRVESLRQMNISVNQVVEEKHTLFPTLKG WQLEEIIYQLIPVLSFLRSVMTCIMDDFNVNNLFAVHKITCVSELNDSLYYYLKNKFN FGENVLVDISLFVDNSDKLENLMLKQKIRKYLDKNAREYLKEYITKNIMFELNFSFTC FGINIKQIKNF" ORIGIN 1 aaaattaccc agttttccgc gggaatccgg cggttggccc ttctcccaaa aaactcctcc 61 tccgcgtttc atggtttggg taccatgaat cacgagaaat tccctcacgg gcgttctcgg 121 gttcatgtta accatgtacc gcactcatgt cattcatttg ttccctcacg ggcgcatctg 181 gtttcatgag aaatctatcc caaaacaaaa acaaaataaa aaacaaaaaa caaaaacaaa 241 acaaaacata tcacgtaggc tgtaccttaa actaaataaa tttacggtcg tttttgcaca 301 cacatttcga gcccggtgtc tgtgcgcaat gtttcggcac gtctcgcgag aacgctgacg 361 tgcatgttaa ctgccgcttg gcagacatgt tacattgttc ccgtaaaccc cctatcctta 421 gctttagttt tctttctgtc ttataaatta atagattatt acataaaaat ataaaaatac 481 caaaaatatt ttttgattgt ggttctttca ctttttcttc attttatgtt tttgtccttt 541 tgtagctttt atatttttta ttggttatta agtatattaa aaaatttttt cttatatagt 601 tcattgtcta ggtttagttt acttgttaga ttaattagtg agtgggttgg tttgctatag 661 tttatatagt ttatcattaa agtttagttt cttcactaga ttaagaagtt ttgtagattg 721 ttaaaatttt tcctcctctc ctttctcatc tcttctcttc gttctccctt ctcttttctt 781 ccttctgttt tgtgttttta gtttatttcg gtttttgtaa aatatgtttt atgtagcata 841 gaaacatttt ctttcttttt cgtttcttct ttccctcttc ttatggtggt gtattttgca 901 tgtattttca tactcctgct ttccacataa ggttttagtg tcgataaccg ttgcgtttcg 961 ccggatcgga agttcgtcaa ttgtaatggt gatggtcgcc taaatggtag cccatctttg 1021 ataattattt acattacatg aggcgttctc gattcgtagg gtattgcgga tttcatccgt 1081 cgtacctggt gttgatacta gactccttgt tcgaatagtt gtagtatggt tatttatgaa 1141 tagttcacca cctttcttct ccttatttaa ttagggtttt cttttcgttt ttctttcatt 1201 ttgacttcaa cctatcaaca ttatcttatg atgttgtcgg gttataaaat tttttctttc 1261 ttttagattt cattttattt ttactcgtat tttctttagg tcttaagaaa aaatcaaaaa 1321 atttttattt atggccactg ccaaagctgg tctcgatttc ggtaccacct tttcaaccat 1381 cagtgcgtac gtgaacgggg tcatgcgagt tttaaaattg aataacaccg aatttatccc 1441 aacttgtttg gcaatcacta atacaggtga tgtggttgtt ggcggaccgg cccaagtctt 1501 agagagtgga gagttagcta actgctactt ctacgatcta aagagatggg ttggtgtgga 1561 caagataaat tttagtatta tcaagaataa gattcgaccc caatatgtgg ccgagttaaa 1621 agggaacgat gtgtacttaa ctggcattaa tagaggttat agttgtacat atactgtaaa 1681 acaactaatc ttactgtata tagagacttt ggtcagactg ttttccaaag ttgaagggtt 1741 gaatatagtt agtcttaatg tctcagtacc ggcagactat aagtgcaaac aacggatgtt 1801 catgaagtct gtatgcgatt ctttgggttt ctctttaagg agaatcatta atgaaccgtc 1861 agcggctgcg atatatttcg tgtcaaagta tcccaattat gacgctttcc tcatgtatga 1921 tttaggcggt ggtacatacg attcatcttt aattgttaag gatggaaaat acgttaccgt 1981 tgctgatact gaaggagatt cctttttagg tgggagagat attgaccgca gtatatcaaa 2041 gtatatcatg aaaaagtacg atttgcaaca tcctttgtca gctgattatt tagccgcgat 2101 aaaagaagat gctaatagta agggcagaga gtctttcaat gtcatggatg tgacaggtag 2161 agtattgaat gtaaaattca ctaaagatga aatggacaaa tgcatccaat cctactctga 2221 tcgaagtcta aagatattgg agaatatggt cttgcggaat aatgtcacat ccggtgcact 2281 tttcctagta ggtggttcat ccctattaga gaaaatccag cgtgatgtaa aatcctttgc 2341 taagacacac aatctaactt gtatcataga tccggatctt aggtctgctg tatcatacgg 2401 ttgttccatg tcacatgctc aagaggattc cggtaatatg acttacatag attgtaactc 2461 tcacccgttg atggacataa cccttttctg cggtcctcga gttatagttc gtaaaccgat 2521 ggcaatcccg tatacataca tgaaggaaga gttggtcaaa tctcactatt caaccatctt 2581 aaatgtgtac gagggatctg atcctttcgt tctttataat gactggttga tcagtgcacg 2641 actcaagacc gcagattatt gcaagctggg gcagacactt gtgtatatgt atagatataa 2701 cgtagatggt attttagaat tattagttag aaataaggaa acaggtgtgg agagtgtgtt 2761 gcctaatacc tttactttga ccgagaagat tgataagtta aagttgactc taactcaatt 2821 gtcaaacatt gatgagttgg cgacacttat cactattttg ggtcacttca gaccagagtt 2881 aaaagatctc ctaacctatg taaagacacc aacaatattt gaaaataaga taaatagttt 2941 tacgacaccg aaagcattgt atcaagagtt gatcacttac aatgctaatt ttgtaaacaa 3001 atgaatggga ttgataattg ttgtatataa attttattgc ggtgtgaata tatattattg 3061 ttctaataat agagattttg tgggtgactt cgaggtcgta acaaccacgg aattggagaa 3121 actcgtcgag attttcgaga gtttcccttt cgtgcgaaca acatggtgag tataatgaat 3181 aatccgcaac tactcagtgc cttccaactt ctatttaaaa ttagtaatgt tgaagaaaaa 3241 ttgagaggtt tgaatgatta tatgcttcaa aatgtaagca aagaaaataa taacgttttc 3301 acagctattt cagggagaaa tccgatgaaa ttcgactcga ctttcactaa gcgaagtggt 3361 gatgtatact ttgataaaga tgatggtaag tctattgtca agttgatact catttacttc 3421 tacaacgtcg agccgtcact tctgacgaaa accggttaca aaccggaatc cttcttcatt 3481 agtgatgatt ggagagcatc gttgctgcaa tggaaaaagt acatagataa gtctatgaac 3541 gatttcttga gtgacaacaa ggatatcggg tgcacttaca ctgaagataa catatcaaag 3601 cattatccaa atcaatccaa gtcaagatta ataacccttt acagggtatg caattcccag 3661 aatagattga tccctcttca agagtttttg gaagggaagg taaaaggctt tgagatcaat 3721 ccaaaagctg atgttgaagc tattggagag ggtttctcga acaacaatct ctttagggag 3781 tgcgttgagt gctttaaaga ttacatgctt cttagcagtt ctcaaagcgg cagggcaaaa 3841 gttttagtgg taaagaaatt ctttgacact tacatagact ccttagtcgg aaaccagctg 3901 atggagacgg tccgtgacaa ccctttagta ctagcgaaat ttgtgaaaga tttcgatgag 3961 tttaccgctg agggccatgg tttctccaat aacttcaaag caatagaaaa attagataaa 4021 aattttcaga agttttgtaa agatgttttt aaactttcta ctagtttaga tagagacact 4081 ttatttgtaa aactaccaaa agactctgtg gttgatatct taggacaacc cattatcctg 4141 tcaaatttta taagacggag tagtatacca aaaccaataa gtaactcatc ttctttgccg 4201 catgacatcg atatttgcgt gtctgagggg attgtcgatt ttctaaaaca atttggcata 4261 gaggataagg tcttaatcct agatactatg ctttttgttt ttgcagcgat gacaacaaac 4321 aagaagattt ggaatactcc gaataaagta tccttttcag tcgatggtaa gaagataagt 4381 tttctcacca cagactttac gggattcata attaatcttg ttagaaggtt tgatcctaac 4441 tatgatacca ataatattat tagacaatgg gcgaatttga gaggtaacag agccttggca 4501 ttatttagaa tgactggttt caaacctcaa ttattctcca ctgtacctgg tattttacct 4561 tggatgagat tcgatttttt caaattatta tctcaacaag atttaactga tgaagaggtc 4621 caatctctcc acacacttcg tctgatgacg gaatggaagt ccaataattc tacttttaac 4681 gagaaaaatt tgttaagatg gatctcacgg aattaattga aagatatgga cctgacagag 4741 ttgaaaaata cttcagtctg tatatgaagt caaaatatca accaggtgga acagcaaatt 4801 tagtgttgga tgttttaaac ttttatcttt tagatctggg tttagaaaag atagatactg 4861 gtataattaa agaggagatt tcagatttct tcttttgtat ttatcacttc tatcgtaatt 4921 taaacgtctt tcacaggcaa taatcacagg tttgaccaaa aattttttat ctatccaaat 4981 aggagttaga tatagtattg atttagtttt acaaaaagaa tttttggcaa tttaataata 5041 aagttaagat tattatggat aataagaaag aagaaagaaa tcagttcagt gatgaggaaa 5101 ctactcctca aactgatagt gaacgcggag gagggatgaa gaagagagat aatagtatgt 5161 ctgtcagaga tatcatttca gaggaacata tgaacccagc aaaattgagt tcaatatcgg 5221 tttactctaa tagaggtgat acaatgacac aagatgatga agccaaattt gagcagtgta 5281 tgaacgagtt ttgtaagaat cttgttgctg gggagccgac aactgaacaa ttcacagcat 5341 tttatgttag tttggttcag tgttggctaa accaaagcac atcaatgaaa aatatgaggc 5401 aacggaattt acaaaatact tttaagatta acgatcagaa gttcacatgg aggaccatgg 5461 attttatgaa ttatgttaag gggaacttac cacatatcag taatccattc agacagtatg 5521 ctcgtagtca tgagaaggag atagaaatat tgaaaagtac tggcaaggtc gtatgtgatc 5581 accacctaca agctaaacat ggtgtggttt ctcagtattg gaatttacca gctgattatg 5641 taaatgggtc gttgattaat ataagtgacg acgatttggc agcgaatcta ttgatgaggt 5701 gtcaggcttt gaagagaaat aaagttgaga agaaaatcta taacgtttca caactagctc 5761 ctgggggttg cagtgaataa tggatcttga agatcttttt tctgaggata aatcagagtt 5821 attggtgcgg gctaataatg acatttggtc tcaatctgtg ggtatgaatt tgaaaaacat 5881 acgcagatta gaattgaggt acaaatatgg ttcgggcgaa atggaaacaa attacatact 5941 tcatctaaaa ttcataattc cagatggtaa tttgattcac gaattctcgt ttaatcatcc 6001 tggatctcat aagttcaaac agactggagg acgattttgg tctagcgcgt ttgatgagct 6061 tgagaaatgt agacccaaca aaattggcca tctcgggcat ttttcagttg ttgaagaagg 6121 agactactat tatttagcgg tcaatggttg gcgacacgtg agggtaaaga aatcacatca 6181 accgacagat ctgataataa gcttggtaaa caccgacact agtggaattc tcgatccggc 6241 tgtccaatat cagagtaatt ttgtcaaatg gaactcactc ttttcagaaa taacgttgaa 6301 caacgtcaaa tctgagataa aagcggttac catttccatg acgcggagta acactggtaa 6361 gcgcactgat ttaaaacccg cacaaggtct tgattttgag aatgcacggc ggttttcaga 6421 tcttaatgtc aaggaggtgg gtcgagatga tgataataat gataatatta aaccacccaa 6481 accaaacatc ccggatgata atatcaaacc caaaccgaag aatgatagca ttaatccacc 6541 aggtcccaaa cccgagggta agggagatga agagggtaaa gacgttgaca acagtaacgt 6601 gaagcccgaa ccgaatctag tggtagatcc aagtactatc atcgacgttt ccaattcaat 6661 ctcaacacgg tctaaattga gaggtgtcgg taggtatgcg ttgagatatg atgtcttgga 6721 aagcatcatg aagaaaatga tagcatacta cgtcaccatg ggtttcgatg acattcaggc 6781 aaaactgatc atttaccagt tcggggtatc cttttgtacg agtaagaatt caactgcgga 6841 taaaggaagt catttattat gggatactaa agacgggagg gtgttacaat taaagaaatg 6901 tgatcacgtg agaatgctta accgtctcag tcctgaacct tgcaacgtcg aaaggttgtt 6961 gttaagaagt cgaagtaaag agatttttca gttgctcaag aatggtgttc tcaaaacatc 7021 tctggtgcac tgtaagaaaa ggagtttgaa accagaatgg gcatatctgg cttgcgactt 7081 ctatgatctc agtgttctcg acttatctga aagtgaactg ttggcattga atagtccggc 7141 cttatacgtg ttacttcgca ataaacataa acgttcaatt gtgaatgtga atcaattgca 7201 ttaacttgat atgatggaat atcctataga gtatgcgaga aacgatggtg gtaataatga 7261 atcactaatc aacattattt cgcataattt caatagtata gtgaatataa tagaaaatta 7321 ttgtatgtat gatgttcatg taatagacgc ggctattgag acttcacata tactcatcaa 7381 catgtgtaag acttgttcag gtgaaataaa cctttactct ttaaataata aaagggtaga 7441 aagtttgcga cagatgaaca tttctgtaaa tcaagtagtg gaagaaaaac atacactctt 7501 tccaacttta aagggatggc aattggagga aataatctac cagttgatac ccgttttgag 7561 ttttttgaga agtgttatga cttgcattat ggatgatttt aatgtgaata atctttttgc 7621 cgtacataaa ataacttgcg tatccgaatt gaatgacagt ttgtactact acttaaaaaa 7681 caaattcaat ttcggtgaga acgtactagt cgacatcagc cttttcgtag ataattctga 7741 taaattagaa aatctgatgt tgaagcaaaa aataagaaaa tatctcgata agaatgcgcg 7801 tgagtatttg aaagagtata ttacaaaaaa tataatgttt gaattaaatt tttcttttac 7861 ttgttttggt ataaatataa aacaaataaa aaatttttaa gaataaagcc catcactttt 7921 gatggaaggg tatttacgat atacgttttg tatccttgag tcaactaccg gcgaatacgc 7981 tgagagtggt ttgtaaaatc tcaaaattaa ctatatatat taataggaag attgaagtaa 8041 attagtatag tcgaagttct aaagtgtcct tttgggacca ccttgaactt ctagttagta 8101 aataaactag gtc //