TH3_RS00005	SM00382	ATPases associated with a variety of cellular activities
TH3_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
TH3_RS00010	SM00480	DNA polymerase III beta subunit
TH3_RS00015	SM00382	ATPases associated with a variety of cellular activities
TH3_RS00020	SM00387	Histidine kinase-like ATPases
TH3_RS00020	SM00433	TopoisomeraseII
TH3_RS00165	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS00310	SM00382	ATPases associated with a variety of cellular activities
TH3_RS00310	SM00448	cheY-homologous receiver domain
TH3_RS00315	SM00387	Histidine kinase-like ATPases
TH3_RS00315	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS00320	SM00448	cheY-homologous receiver domain
TH3_RS00320	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS00325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS00325	SM00387	Histidine kinase-like ATPases
TH3_RS00325	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS00355	SM00996	S-adenosyl-L-homocysteine hydrolase
TH3_RS00355	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
TH3_RS00390	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS00395	SM00091	PAS domain
TH3_RS00395	SM00387	Histidine kinase-like ATPases
TH3_RS00395	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS00420	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS00425	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS00425	SM00419	helix_turn_helix, cAMP Regulatory protein
TH3_RS00450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS00450	SM00895	TH3_RS00450
TH3_RS00470	SM00493	TH3_RS00470
TH3_RS00480	SM00382	ATPases associated with a variety of cellular activities
TH3_RS00530	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
TH3_RS00550	SM00052	Putative diguanylate phosphodiesterase
TH3_RS00550	SM00091	PAS domain
TH3_RS00615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS00615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS00620	SM00028	Tetratricopeptide repeats
TH3_RS00655	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TH3_RS00660	SM00267	diguanylate cyclase
TH3_RS00690	SM00387	Histidine kinase-like ATPases
TH3_RS00725	SM00226	Low molecular weight phosphatase family
TH3_RS00730	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS00795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS00795	SM00387	Histidine kinase-like ATPases
TH3_RS00795	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS00800	SM00382	ATPases associated with a variety of cellular activities
TH3_RS00800	SM00448	cheY-homologous receiver domain
TH3_RS00815	SM00382	ATPases associated with a variety of cellular activities
TH3_RS00855	SM00487	DEAD-like helicases superfamily
TH3_RS00855	SM00490	helicase superfamily c-terminal domain
TH3_RS00860	SM00487	DEAD-like helicases superfamily
TH3_RS00860	SM00490	helicase superfamily c-terminal domain
TH3_RS00880	SM00954	Region found in RelA / SpoT proteins
TH3_RS00980	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01005	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS01075	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01100	SM00072	Guanylate kinase homologues.
TH3_RS01110	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01115	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01140	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS01140	SM00866	TH3_RS01140
TH3_RS01150	SM00267	diguanylate cyclase
TH3_RS01195	SM00267	diguanylate cyclase
TH3_RS01200	SM00028	Tetratricopeptide repeats
TH3_RS01300	SM00506	Appr-1"-p processing enzyme
TH3_RS01305	SM00851	MGS-like domain
TH3_RS01330	SM00861	Transketolase, pyrimidine binding domain
TH3_RS01335	SM00881	CoA binding domain
TH3_RS01400	SM01230	TH3_RS01400
TH3_RS01435	SM00487	DEAD-like helicases superfamily
TH3_RS01435	SM00490	helicase superfamily c-terminal domain
TH3_RS01440	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS01470	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01480	SM00448	cheY-homologous receiver domain
TH3_RS01485	SM00028	Tetratricopeptide repeats
TH3_RS01515	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TH3_RS01520	SM00226	Low molecular weight phosphatase family
TH3_RS01525	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS01545	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS01550	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS01575	SM00354	helix_turn _helix lactose operon repressor
TH3_RS01590	SM01152	TH3_RS01590
TH3_RS01620	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01655	SM00965	Secretin and TonB N terminus short domain
TH3_RS01675	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TH3_RS01705	SM01329	TH3_RS01705
TH3_RS01745	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01745	SM00962	SRP54-type protein, GTPase domain
TH3_RS01745	SM00963	SRP54-type protein, helical bundle domain
TH3_RS01760	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS01760	SM00419	helix_turn_helix, cAMP Regulatory protein
TH3_RS01855	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TH3_RS01855	SM00245	tail specific protease
TH3_RS01905	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01920	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TH3_RS01920	SM00267	diguanylate cyclase
TH3_RS01925	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TH3_RS01925	SM00267	diguanylate cyclase
TH3_RS01955	SM00903	Flavin reductase like domain
TH3_RS01975	SM00382	ATPases associated with a variety of cellular activities
TH3_RS01995	SM00478	endonuclease III
TH3_RS01995	SM00525	TH3_RS01995
TH3_RS02065	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02100	SM00052	Putative diguanylate phosphodiesterase
TH3_RS02100	SM00267	diguanylate cyclase
TH3_RS02130	SM01091	Transporter associated domain
TH3_RS02135	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS02165	SM00271	DnaJ molecular chaperone homology domain
TH3_RS02175	SM00327	von Willebrand factor (vWF) type A domain
TH3_RS02195	SM00052	Putative diguanylate phosphodiesterase
TH3_RS02195	SM00267	diguanylate cyclase
TH3_RS02210	SM00507	HNH nucleases
TH3_RS02220	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS02260	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02265	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02290	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02290	SM00448	cheY-homologous receiver domain
TH3_RS02295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS02295	SM00387	Histidine kinase-like ATPases
TH3_RS02295	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS02300	SM00829	Enoylreductase
TH3_RS02320	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS02320	SM00895	TH3_RS02320
TH3_RS02345	SM00965	Secretin and TonB N terminus short domain
TH3_RS02370	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02390	SM00354	helix_turn _helix lactose operon repressor
TH3_RS02395	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS02400	SM00448	cheY-homologous receiver domain
TH3_RS02400	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS02415	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
TH3_RS02425	SM00344	helix_turn_helix ASNC type
TH3_RS02460	SM00346	helix_turn_helix isocitrate lyase regulation
TH3_RS02465	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS02490	SM00344	helix_turn_helix ASNC type
TH3_RS02520	SM00354	helix_turn _helix lactose operon repressor
TH3_RS02525	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02610	SM00344	helix_turn_helix ASNC type
TH3_RS02650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS02675	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS02705	SM00829	Enoylreductase
TH3_RS02715	SM00267	diguanylate cyclase
TH3_RS02730	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
TH3_RS02760	SM00267	diguanylate cyclase
TH3_RS02775	SM00919	Malic enzyme, NAD binding domain
TH3_RS02775	SM01274	TH3_RS02775
TH3_RS02780	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS02780	SM00924	MgtE intracellular N domain
TH3_RS02785	SM00052	Putative diguanylate phosphodiesterase
TH3_RS02785	SM00267	diguanylate cyclase
TH3_RS02785	SM01079	TH3_RS02785
TH3_RS02810	SM00831	Cation transporter/ATPase, N-terminus
TH3_RS02850	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS02875	SM00422	helix_turn_helix, mercury resistance
TH3_RS02880	SM00490	helicase superfamily c-terminal domain
TH3_RS02885	SM00363	S4 RNA-binding domain
TH3_RS02890	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02895	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02905	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
TH3_RS02935	SM00267	diguanylate cyclase
TH3_RS02940	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS02945	SM00382	ATPases associated with a variety of cellular activities
TH3_RS02945	SM00962	SRP54-type protein, GTPase domain
TH3_RS02945	SM00963	SRP54-type protein, helical bundle domain
TH3_RS03010	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS03020	SM00363	S4 RNA-binding domain
TH3_RS03050	SM00822	TH3_RS03050
TH3_RS03055	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS03070	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03075	SM01209	TH3_RS03075
TH3_RS03075	SM01210	TH3_RS03075
TH3_RS03095	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS03125	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03145	SM00046	Diacylglycerol kinase catalytic domain (presumed)
TH3_RS03210	SM00830	Chorismate mutase type II
TH3_RS03230	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03240	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS03240	SM01134	TH3_RS03240
TH3_RS03280	SM00829	Enoylreductase
TH3_RS03290	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03295	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03325	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS03325	SM01080	TH3_RS03325
TH3_RS03385	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS03415	SM00344	helix_turn_helix ASNC type
TH3_RS03445	SM00354	helix_turn _helix lactose operon repressor
TH3_RS03505	SM00840	TH3_RS03505
TH3_RS03515	SM00422	helix_turn_helix, mercury resistance
TH3_RS03545	SM00917	LeuA allosteric (dimerisation) domain
TH3_RS03560	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03580	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS03580	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS03585	SM00363	S4 RNA-binding domain
TH3_RS03585	SM01390	TH3_RS03585
TH3_RS03630	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS03650	SM00073	Histidine Phosphotransfer domain
TH3_RS03650	SM00260	Two component signalling adaptor domain
TH3_RS03650	SM00387	Histidine kinase-like ATPases
TH3_RS03650	SM00448	cheY-homologous receiver domain
TH3_RS03650	SM01231	TH3_RS03650
TH3_RS03655	SM00260	Two component signalling adaptor domain
TH3_RS03660	SM00448	cheY-homologous receiver domain
TH3_RS03665	SM00448	cheY-homologous receiver domain
TH3_RS03675	SM00448	cheY-homologous receiver domain
TH3_RS03675	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS03680	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03710	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03715	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
TH3_RS03720	SM00344	helix_turn_helix ASNC type
TH3_RS03745	SM00962	SRP54-type protein, GTPase domain
TH3_RS03755	SM00382	ATPases associated with a variety of cellular activities
TH3_RS03880	SM00858	TH3_RS03880
TH3_RS03915	SM00448	cheY-homologous receiver domain
TH3_RS03940	SM00671	Sel1-like repeats.
TH3_RS04010	SM00091	PAS domain
TH3_RS04010	SM00387	Histidine kinase-like ATPases
TH3_RS04010	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS04010	SM00448	cheY-homologous receiver domain
TH3_RS04050	SM00382	ATPases associated with a variety of cellular activities
TH3_RS04055	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS04090	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TH3_RS04110	SM00028	Tetratricopeptide repeats
TH3_RS04125	SM00382	ATPases associated with a variety of cellular activities
TH3_RS04140	SM00344	helix_turn_helix ASNC type
TH3_RS04195	SM01329	TH3_RS04195
TH3_RS04245	SM00382	ATPases associated with a variety of cellular activities
TH3_RS04250	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS04250	SM01134	TH3_RS04250
TH3_RS04285	SM00257	Lysin motif
TH3_RS04325	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS04405	SM00984	UDP binding domain
TH3_RS04485	SM00487	DEAD-like helicases superfamily
TH3_RS04485	SM00490	helicase superfamily c-terminal domain
TH3_RS04485	SM00847	Helicase associated domain (HA2)  Add an annotation
TH3_RS04535	SM00052	Putative diguanylate phosphodiesterase
TH3_RS04535	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TH3_RS04535	SM00091	PAS domain
TH3_RS04535	SM00267	diguanylate cyclase
TH3_RS04575	SM00491	TH3_RS04575
TH3_RS04585	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS04620	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS04640	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS04640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS04645	SM00052	Putative diguanylate phosphodiesterase
TH3_RS04645	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TH3_RS04645	SM00091	PAS domain
TH3_RS04645	SM00267	diguanylate cyclase
TH3_RS04645	SM00448	cheY-homologous receiver domain
TH3_RS04650	SM00091	PAS domain
TH3_RS04650	SM00387	Histidine kinase-like ATPases
TH3_RS04675	SM00354	helix_turn _helix lactose operon repressor
TH3_RS04690	SM00382	ATPases associated with a variety of cellular activities
TH3_RS04700	SM00387	Histidine kinase-like ATPases
TH3_RS04700	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS04700	SM00448	cheY-homologous receiver domain
TH3_RS04700	SM01079	TH3_RS04700
TH3_RS04865	SM00953	TH3_RS04865
TH3_RS04880	SM00465	GIY-YIG type nucleases (URI domain)
TH3_RS05005	SM00382	ATPases associated with a variety of cellular activities
TH3_RS05030	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS05030	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS05060	SM00965	Secretin and TonB N terminus short domain
TH3_RS05085	SM00382	ATPases associated with a variety of cellular activities
TH3_RS05120	SM00287	Bacterial SH3 domain homologues
TH3_RS05150	SM00450	Rhodanese Homology Domain
TH3_RS05160	SM00487	DEAD-like helicases superfamily
TH3_RS05160	SM00490	helicase superfamily c-terminal domain
TH3_RS05165	SM00357	Cold shock protein domain
TH3_RS05170	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS05170	SM00895	TH3_RS05170
TH3_RS05175	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS05190	SM00382	ATPases associated with a variety of cellular activities
TH3_RS05210	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS05220	SM00829	Enoylreductase
TH3_RS05230	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS05230	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS05230	SM01049	TH3_RS05230
TH3_RS05235	SM00833	Cobalamin synthesis protein cobW C-terminal domain
TH3_RS05330	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TH3_RS05330	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS05370	SM00052	Putative diguanylate phosphodiesterase
TH3_RS05370	SM00267	diguanylate cyclase
TH3_RS05380	SM00331	Sigma factor PP2C-like phosphatases
TH3_RS05380	SM00448	cheY-homologous receiver domain
TH3_RS05390	SM00382	ATPases associated with a variety of cellular activities
TH3_RS05390	SM00448	cheY-homologous receiver domain
TH3_RS05430	SM00267	diguanylate cyclase
TH3_RS05465	SM00917	LeuA allosteric (dimerisation) domain
TH3_RS05485	SM00267	diguanylate cyclase
TH3_RS05490	SM00357	Cold shock protein domain
TH3_RS05530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS05535	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS05535	SM01240	TH3_RS05535
TH3_RS05575	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS05595	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS05625	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS05640	SM00382	ATPases associated with a variety of cellular activities
TH3_RS05650	SM00346	helix_turn_helix isocitrate lyase regulation
TH3_RS05680	SM00813	Alpha-L-arabinofuranosidase C-terminus
TH3_RS05685	SM00382	ATPases associated with a variety of cellular activities
TH3_RS05705	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS05745	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS05765	SM00642	Alpha-amylase domain
TH3_RS05770	SM00382	ATPases associated with a variety of cellular activities
TH3_RS05890	SM00763	PrkA AAA domain
TH3_RS05895	SM00450	Rhodanese Homology Domain
TH3_RS05900	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS05960	SM00967	RNA 2'-O ribose methyltransferase substrate binding
TH3_RS05990	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
TH3_RS05990	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TH3_RS05995	SM00649	Ribosomal protein L11/L12
TH3_RS06020	SM00663	RNA polymerase I subunit A N-terminus
TH3_RS06035	SM00838	Elongation factor G C-terminus
TH3_RS06035	SM00889	Elongation factor G, domain IV
TH3_RS06045	SM01403	TH3_RS06045
TH3_RS06065	SM01382	TH3_RS06065
TH3_RS06065	SM01383	TH3_RS06065
TH3_RS06080	SM00322	K homology RNA-binding domain
TH3_RS06100	SM01374	TH3_RS06100
TH3_RS06105	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
TH3_RS06170	SM00662	RNA polymerases D
TH3_RS06180	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TH3_RS06195	SM00382	ATPases associated with a variety of cellular activities
TH3_RS06250	SM00382	ATPases associated with a variety of cellular activities
TH3_RS06275	SM00878	Biotin carboxylase C-terminal domain
TH3_RS06335	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS06340	SM00450	Rhodanese Homology Domain
TH3_RS06405	SM00382	ATPases associated with a variety of cellular activities
TH3_RS06445	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS06460	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS06480	SM00869	Autotransporter beta-domain
TH3_RS06485	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS06495	SM00382	ATPases associated with a variety of cellular activities
TH3_RS06500	SM00562	TH3_RS06500
TH3_RS06555	SM00341	Helicase and RNase D C-terminal
TH3_RS06555	SM00474	3'-5' exonuclease
TH3_RS06610	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS06645	SM00861	Transketolase, pyrimidine binding domain
TH3_RS06695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS06695	SM00895	TH3_RS06695
TH3_RS06700	SM00363	S4 RNA-binding domain
TH3_RS06760	SM01236	TH3_RS06760
TH3_RS06775	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS06790	SM00271	DnaJ molecular chaperone homology domain
TH3_RS06805	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS06900	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS06935	SM00382	ATPases associated with a variety of cellular activities
TH3_RS06935	SM00448	cheY-homologous receiver domain
TH3_RS06940	SM00387	Histidine kinase-like ATPases
TH3_RS06940	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS06985	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS07025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS07025	SM00895	TH3_RS07025
TH3_RS07055	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS07055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS07120	SM00841	Elongation factor P, C-terminal
TH3_RS07120	SM01185	TH3_RS07120
TH3_RS07135	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
TH3_RS07140	SM00861	Transketolase, pyrimidine binding domain
TH3_RS07180	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TH3_RS07185	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07235	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07245	SM00448	cheY-homologous receiver domain
TH3_RS07245	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS07250	SM00387	Histidine kinase-like ATPases
TH3_RS07250	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS07285	SM00028	Tetratricopeptide repeats
TH3_RS07330	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
TH3_RS07330	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
TH3_RS07335	SM00344	helix_turn_helix ASNC type
TH3_RS07370	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07380	SM01230	TH3_RS07380
TH3_RS07390	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
TH3_RS07395	SM00267	diguanylate cyclase
TH3_RS07420	SM00679	Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.
TH3_RS07430	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07445	SM00052	Putative diguanylate phosphodiesterase
TH3_RS07445	SM00448	cheY-homologous receiver domain
TH3_RS07450	SM00886	Stress responsive A/B Barrel Domain
TH3_RS07455	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TH3_RS07455	SM00091	PAS domain
TH3_RS07455	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS07475	SM00953	TH3_RS07475
TH3_RS07485	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07495	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS07555	SM01266	TH3_RS07555
TH3_RS07570	SM00448	cheY-homologous receiver domain
TH3_RS07570	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS07575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS07575	SM00387	Histidine kinase-like ATPases
TH3_RS07575	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS07600	SM00354	helix_turn _helix lactose operon repressor
TH3_RS07620	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07705	SM00869	Autotransporter beta-domain
TH3_RS07745	SM00867	YceI-like domain 
TH3_RS07755	SM00867	YceI-like domain 
TH3_RS07760	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS07760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS07760	SM01049	TH3_RS07760
TH3_RS07770	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS07770	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS07770	SM01049	TH3_RS07770
TH3_RS07785	SM00344	helix_turn_helix ASNC type
TH3_RS07800	SM00487	DEAD-like helicases superfamily
TH3_RS07800	SM00490	helicase superfamily c-terminal domain
TH3_RS07835	SM00387	Histidine kinase-like ATPases
TH3_RS07835	SM00433	TopoisomeraseII
TH3_RS07860	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS07870	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07875	SM00382	ATPases associated with a variety of cellular activities
TH3_RS07915	SM00448	cheY-homologous receiver domain
TH3_RS07965	SM00881	CoA binding domain
TH3_RS08040	SM00859	Semialdehyde dehydrogenase, NAD binding domain
TH3_RS08055	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS08175	SM00849	Metallo-beta-lactamase superfamily
TH3_RS08190	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS08190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS08250	SM00382	ATPases associated with a variety of cellular activities
TH3_RS08260	SM00912	haemagglutination activity domain
TH3_RS08300	SM00829	Enoylreductase
TH3_RS08390	SM00833	Cobalamin synthesis protein cobW C-terminal domain
TH3_RS08405	SM00382	ATPases associated with a variety of cellular activities
TH3_RS08445	SM00450	Rhodanese Homology Domain
TH3_RS08450	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TH3_RS08470	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS08530	SM00091	PAS domain
TH3_RS08530	SM00267	diguanylate cyclase
TH3_RS08545	SM00271	DnaJ molecular chaperone homology domain
TH3_RS08560	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS08560	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS08565	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS08565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS08570	SM00344	helix_turn_helix ASNC type
TH3_RS08580	SM00028	Tetratricopeptide repeats
TH3_RS08615	SM00091	PAS domain
TH3_RS08615	SM00267	diguanylate cyclase
TH3_RS08620	SM00052	Putative diguanylate phosphodiesterase
TH3_RS08625	SM00267	diguanylate cyclase
TH3_RS08650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS08690	SM00788	Adenylosuccinate synthetase
TH3_RS08695	SM00220	Serine/Threonine protein kinases, catalytic domain
TH3_RS08710	SM00363	S4 RNA-binding domain
TH3_RS08720	SM00232	JAB/MPN domain
TH3_RS08730	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS08735	SM00382	ATPases associated with a variety of cellular activities
TH3_RS08810	SM00382	ATPases associated with a variety of cellular activities
TH3_RS08830	SM00382	ATPases associated with a variety of cellular activities
TH3_RS08835	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS08865	SM00852	Probable molybdopterin binding domain
TH3_RS08870	SM00849	Metallo-beta-lactamase superfamily
TH3_RS08870	SM01027	Beta-Casp domain
TH3_RS08890	SM00855	Phosphoglycerate mutase family
TH3_RS08910	SM00382	ATPases associated with a variety of cellular activities
TH3_RS08975	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS08975	SM00419	helix_turn_helix, cAMP Regulatory protein
TH3_RS08990	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TH3_RS08990	SM00245	tail specific protease
TH3_RS09005	SM00316	Ribosomal protein S1-like RNA-binding domain
TH3_RS09005	SM00955	TH3_RS09005
TH3_RS09010	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
TH3_RS09010	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
TH3_RS09010	SM00493	TH3_RS09010
TH3_RS09020	SM01207	TH3_RS09020
TH3_RS09045	SM00732	Likely ribonuclease with RNase H fold.
TH3_RS09060	SM00845	GatB domain
TH3_RS09065	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS09070	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS09070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS09070	SM01358	TH3_RS09070
TH3_RS09075	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS09135	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS09185	SM01230	TH3_RS09185
TH3_RS09230	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09260	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
TH3_RS09275	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS09275	SM01134	TH3_RS09275
TH3_RS09280	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09290	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09305	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS09315	SM00852	Probable molybdopterin binding domain
TH3_RS09335	SM00346	helix_turn_helix isocitrate lyase regulation
TH3_RS09360	SM00028	Tetratricopeptide repeats
TH3_RS09365	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
TH3_RS09415	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09450	SM00710	Parallel beta-helix repeats
TH3_RS09455	SM00422	helix_turn_helix, mercury resistance
TH3_RS09460	SM00881	CoA binding domain
TH3_RS09495	SM00450	Rhodanese Homology Domain
TH3_RS09555	SM00836	DALR anticodon binding domain
TH3_RS09555	SM01016	Arginyl tRNA synthetase N terminal dom
TH3_RS09585	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09620	SM00257	Lysin motif
TH3_RS09630	SM01323	TH3_RS09630
TH3_RS09710	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS09710	SM00866	TH3_RS09710
TH3_RS09740	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09750	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09780	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09830	SM00487	DEAD-like helicases superfamily
TH3_RS09830	SM00490	helicase superfamily c-terminal domain
TH3_RS09840	SM00487	DEAD-like helicases superfamily
TH3_RS09840	SM00490	helicase superfamily c-terminal domain
TH3_RS09840	SM00982	TH3_RS09840
TH3_RS09840	SM01058	CarD-like/TRCF domain
TH3_RS09855	SM01133	TH3_RS09855
TH3_RS09875	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS09880	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09885	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS09885	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS09905	SM00936	Penicillin-binding protein 5, C-terminal domain 
TH3_RS09930	SM00849	Metallo-beta-lactamase superfamily
TH3_RS09935	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS09990	SM00382	ATPases associated with a variety of cellular activities
TH3_RS09990	SM00448	cheY-homologous receiver domain
TH3_RS09995	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS09995	SM00387	Histidine kinase-like ATPases
TH3_RS09995	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS10000	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10000	SM00448	cheY-homologous receiver domain
TH3_RS10005	SM00091	PAS domain
TH3_RS10005	SM00387	Histidine kinase-like ATPases
TH3_RS10005	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS10055	SM00411	bacterial (prokaryotic) histone like domain
TH3_RS10145	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10150	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10190	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS10190	SM01134	TH3_RS10190
TH3_RS10200	SM01004	Delta-aminolevulinic acid dehydratase
TH3_RS10235	SM00903	Flavin reductase like domain
TH3_RS10270	SM00434	DNA Topoisomerase IV
TH3_RS10290	SM00358	Double-stranded RNA binding motif
TH3_RS10290	SM00535	Ribonuclease III family
TH3_RS10315	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS10315	SM00954	Region found in RelA / SpoT proteins
TH3_RS10320	SM01409	TH3_RS10320
TH3_RS10335	SM00986	Uracil DNA glycosylase superfamily
TH3_RS10335	SM00987	UreE urease accessory protein, C-terminal domain 
TH3_RS10340	SM00341	Helicase and RNase D C-terminal
TH3_RS10340	SM00487	DEAD-like helicases superfamily
TH3_RS10340	SM00490	helicase superfamily c-terminal domain
TH3_RS10340	SM00956	TH3_RS10340
TH3_RS10360	SM01130	TH3_RS10360
TH3_RS10400	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS10415	SM00861	Transketolase, pyrimidine binding domain
TH3_RS10430	SM01192	TH3_RS10430
TH3_RS10430	SM01193	TH3_RS10430
TH3_RS10555	SM00935	Outer membrane protein (OmpH-like)
TH3_RS10565	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TH3_RS10610	SM00481	DNA polymerase alpha chain like domain
TH3_RS10615	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10645	SM00849	Metallo-beta-lactamase superfamily
TH3_RS10695	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
TH3_RS10700	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
TH3_RS10755	SM00411	bacterial (prokaryotic) histone like domain
TH3_RS10760	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10760	SM00464	Found in ATP-dependent protease La (LON)
TH3_RS10765	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10765	SM00994	ClpX C4-type zinc finger
TH3_RS10765	SM01086	C-terminal, D2-small domain, of ClpB protein
TH3_RS10795	SM00387	Histidine kinase-like ATPases
TH3_RS10795	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS10805	SM00422	helix_turn_helix, mercury resistance
TH3_RS10850	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10855	SM00387	Histidine kinase-like ATPases
TH3_RS10855	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS10860	SM00448	cheY-homologous receiver domain
TH3_RS10860	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS10900	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS10905	SM01230	TH3_RS10905
TH3_RS10965	SM00382	ATPases associated with a variety of cellular activities
TH3_RS10995	SM00382	ATPases associated with a variety of cellular activities
TH3_RS11060	SM01119	TH3_RS11060
TH3_RS11125	SM00849	Metallo-beta-lactamase superfamily
TH3_RS11145	SM00998	Adenylosuccinate lyase C-terminus
TH3_RS11155	SM00882	Coenzyme A transferase
TH3_RS11160	SM00882	Coenzyme A transferase
TH3_RS11205	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS11220	SM00382	ATPases associated with a variety of cellular activities
TH3_RS11255	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS11340	SM00642	Alpha-amylase domain
TH3_RS11370	SM00346	helix_turn_helix isocitrate lyase regulation
TH3_RS11385	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS11390	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS11410	SM00966	SpoVT / AbrB like domain 
TH3_RS11445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS11445	SM00895	TH3_RS11445
TH3_RS11465	SM00382	ATPases associated with a variety of cellular activities
TH3_RS11505	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS11505	SM00895	TH3_RS11505
TH3_RS11585	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS11585	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS11600	SM00421	helix_turn_helix, Lux Regulon
TH3_RS11600	SM00448	cheY-homologous receiver domain
TH3_RS11615	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS11635	SM00091	PAS domain
TH3_RS11635	SM00387	Histidine kinase-like ATPases
TH3_RS11635	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS11635	SM00448	cheY-homologous receiver domain
TH3_RS11660	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS11665	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS11730	SM00434	DNA Topoisomerase IV
TH3_RS11780	SM00938	Nitrogen regulatory protein P-II
TH3_RS11785	SM01230	TH3_RS11785
TH3_RS11790	SM00091	PAS domain
TH3_RS11790	SM00267	diguanylate cyclase
TH3_RS11815	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS11840	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS11840	SM00895	TH3_RS11840
TH3_RS11860	SM00052	Putative diguanylate phosphodiesterase
TH3_RS11865	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS11905	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS11965	SM00271	DnaJ molecular chaperone homology domain
TH3_RS12045	SM00829	Enoylreductase
TH3_RS12060	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS12060	SM00478	endonuclease III
TH3_RS12060	SM01009	AlkA N-terminal domain
TH3_RS12075	SM00937	TH3_RS12075
TH3_RS12090	SM00646	TH3_RS12090
TH3_RS12145	SM00878	Biotin carboxylase C-terminal domain
TH3_RS12175	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS12175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS12190	SM00382	ATPases associated with a variety of cellular activities
TH3_RS12190	SM01086	C-terminal, D2-small domain, of ClpB protein
TH3_RS12220	SM00984	UDP binding domain
TH3_RS12230	SM00271	DnaJ molecular chaperone homology domain
TH3_RS12270	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
TH3_RS12290	SM00344	helix_turn_helix ASNC type
TH3_RS12310	SM00878	Biotin carboxylase C-terminal domain
TH3_RS12320	SM01006	Siderophore biosynthesis protein domain
TH3_RS12390	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TH3_RS12390	SM00245	tail specific protease
TH3_RS12425	SM00650	Ribosomal RNA adenine dimethylases
TH3_RS12430	SM00072	Guanylate kinase homologues.
TH3_RS12450	SM00825	Beta-ketoacyl synthase
TH3_RS12460	SM00822	TH3_RS12460
TH3_RS12465	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
TH3_RS12495	SM01005	Alanine racemase, C-terminal domain
TH3_RS12505	SM00382	ATPases associated with a variety of cellular activities
TH3_RS12510	SM00382	ATPases associated with a variety of cellular activities
TH3_RS12555	SM00564	beta-propeller repeat
TH3_RS12575	SM00671	Sel1-like repeats.
TH3_RS12590	SM00564	beta-propeller repeat
TH3_RS12620	SM00883	Chaperonin 10 Kd subunit
TH3_RS12675	SM00382	ATPases associated with a variety of cellular activities
TH3_RS12700	SM00318	Staphylococcal nuclease homologues
TH3_RS12715	SM00855	Phosphoglycerate mutase family
TH3_RS12720	SM00849	Metallo-beta-lactamase superfamily
TH3_RS12725	SM00382	ATPases associated with a variety of cellular activities
TH3_RS12740	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS12740	SM01134	TH3_RS12740
TH3_RS12815	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS12820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS12820	SM00387	Histidine kinase-like ATPases
TH3_RS12820	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS12825	SM00448	cheY-homologous receiver domain
TH3_RS12825	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS12865	SM00344	helix_turn_helix ASNC type
TH3_RS12870	SM00382	ATPases associated with a variety of cellular activities
TH3_RS12955	SM00344	helix_turn_helix ASNC type
TH3_RS12985	SM00481	DNA polymerase alpha chain like domain
TH3_RS13010	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13025	SM00448	cheY-homologous receiver domain
TH3_RS13025	SM01012	TH3_RS13025
TH3_RS13050	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
TH3_RS13150	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS13155	SM00893	Electron transfer flavoprotein domain
TH3_RS13160	SM00893	Electron transfer flavoprotein domain
TH3_RS13215	SM00965	Secretin and TonB N terminus short domain
TH3_RS13220	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13255	SM01006	Siderophore biosynthesis protein domain
TH3_RS13285	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS13310	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13400	SM00487	DEAD-like helicases superfamily
TH3_RS13430	SM00487	DEAD-like helicases superfamily
TH3_RS13430	SM00490	helicase superfamily c-terminal domain
TH3_RS13485	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS13485	SM00895	TH3_RS13485
TH3_RS13500	SM01130	TH3_RS13500
TH3_RS13550	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13555	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13580	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS13580	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS13595	SM00244	prohibitin homologues
TH3_RS13630	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13650	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS13680	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13695	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS13695	SM01134	TH3_RS13695
TH3_RS13745	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13770	SM00965	Secretin and TonB N terminus short domain
TH3_RS13805	SM01130	TH3_RS13805
TH3_RS13820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS13820	SM00895	TH3_RS13820
TH3_RS13830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS13830	SM00895	TH3_RS13830
TH3_RS13880	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13905	SM01130	TH3_RS13905
TH3_RS13930	SM00354	helix_turn _helix lactose operon repressor
TH3_RS13945	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
TH3_RS13945	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
TH3_RS13950	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
TH3_RS13970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS13970	SM00387	Histidine kinase-like ATPases
TH3_RS13970	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS13975	SM00382	ATPases associated with a variety of cellular activities
TH3_RS13975	SM00448	cheY-homologous receiver domain
TH3_RS13990	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14005	SM00823	Phosphopantetheine attachment site
TH3_RS14005	SM00825	Beta-ketoacyl synthase
TH3_RS14005	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
TH3_RS14010	SM00822	TH3_RS14010
TH3_RS14010	SM00823	Phosphopantetheine attachment site
TH3_RS14010	SM00825	Beta-ketoacyl synthase
TH3_RS14010	SM01294	TH3_RS14010
TH3_RS14015	SM00823	Phosphopantetheine attachment site
TH3_RS14015	SM00824	Thioesterase
TH3_RS14080	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14085	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14090	SM00824	Thioesterase
TH3_RS14110	SM00563	Phosphate acyltransferases
TH3_RS14170	SM00825	Beta-ketoacyl synthase
TH3_RS14180	SM00822	TH3_RS14180
TH3_RS14185	SM00825	Beta-ketoacyl synthase
TH3_RS14200	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14205	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14250	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS14255	SM00822	TH3_RS14255
TH3_RS14300	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14335	SM00354	helix_turn _helix lactose operon repressor
TH3_RS14355	SM00857	Resolvase, N terminal domain
TH3_RS14375	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS14425	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14460	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14480	SM01012	TH3_RS14480
TH3_RS14505	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14545	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TH3_RS14545	SM00091	PAS domain
TH3_RS14545	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS14590	SM00822	TH3_RS14590
TH3_RS14605	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14710	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS14725	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14735	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14740	SM01219	TH3_RS14740
TH3_RS14750	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS14765	SM00829	Enoylreductase
TH3_RS14785	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS14785	SM01134	TH3_RS14785
TH3_RS14805	SM00869	Autotransporter beta-domain
TH3_RS14850	SM00267	diguanylate cyclase
TH3_RS14855	SM01001	AIR carboxylase
TH3_RS14860	SM01209	TH3_RS14860
TH3_RS14920	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
TH3_RS14920	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
TH3_RS14955	SM00382	ATPases associated with a variety of cellular activities
TH3_RS14955	SM01086	C-terminal, D2-small domain, of ClpB protein
TH3_RS14980	SM00937	TH3_RS14980
TH3_RS15005	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TH3_RS15040	SM00098	Alkaline phosphatase homologues
TH3_RS15050	SM00382	ATPases associated with a variety of cellular activities
TH3_RS15075	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS15075	SM00895	TH3_RS15075
TH3_RS15085	SM00858	TH3_RS15085
TH3_RS15155	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS15160	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS15190	SM00382	ATPases associated with a variety of cellular activities
TH3_RS15195	SM00382	ATPases associated with a variety of cellular activities
TH3_RS15225	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS15230	SM00822	TH3_RS15230
TH3_RS15235	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TH3_RS15235	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS15240	SM00849	Metallo-beta-lactamase superfamily
TH3_RS15250	SM00998	Adenylosuccinate lyase C-terminus
TH3_RS15275	SM00421	helix_turn_helix, Lux Regulon
TH3_RS15275	SM00448	cheY-homologous receiver domain
TH3_RS15300	SM01211	TH3_RS15300
TH3_RS15310	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS15320	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS15330	SM00244	prohibitin homologues
TH3_RS15335	SM00244	prohibitin homologues
TH3_RS15345	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TH3_RS15400	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS15410	SM00880	TH3_RS15410
TH3_RS15410	SM01118	TH3_RS15410
TH3_RS15450	SM00316	Ribosomal protein S1-like RNA-binding domain
TH3_RS15460	SM00226	Low molecular weight phosphatase family
TH3_RS15515	SM00421	helix_turn_helix, Lux Regulon
TH3_RS15515	SM00448	cheY-homologous receiver domain
TH3_RS15525	SM00091	PAS domain
TH3_RS15525	SM00387	Histidine kinase-like ATPases
TH3_RS15525	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS15525	SM00448	cheY-homologous receiver domain
TH3_RS15530	SM00829	Enoylreductase
TH3_RS15685	SM00448	cheY-homologous receiver domain
TH3_RS15710	SM00965	Secretin and TonB N terminus short domain
TH3_RS15770	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS15820	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS15855	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TH3_RS15855	SM00267	diguanylate cyclase
TH3_RS15940	SM00271	DnaJ molecular chaperone homology domain
TH3_RS15945	SM00382	ATPases associated with a variety of cellular activities
TH3_RS15955	SM00644	TH3_RS15955
TH3_RS15980	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS16100	SM00354	helix_turn _helix lactose operon repressor
TH3_RS16105	SM00382	ATPases associated with a variety of cellular activities
TH3_RS16135	SM00382	ATPases associated with a variety of cellular activities
TH3_RS16140	SM00382	ATPases associated with a variety of cellular activities
TH3_RS16160	SM00346	helix_turn_helix isocitrate lyase regulation
TH3_RS16165	SM00842	Cell division protein FtsA
TH3_RS16170	SM00864	Tubulin/FtsZ family, GTPase domain
TH3_RS16170	SM00865	Tubulin/FtsZ family, C-terminal domain
TH3_RS16190	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TH3_RS16190	SM00292	breast cancer carboxy-terminal domain
TH3_RS16190	SM00532	Ligase N family
TH3_RS16205	SM00318	Staphylococcal nuclease homologues
TH3_RS16235	SM00822	TH3_RS16235
TH3_RS16285	SM01018	B12 binding domain
TH3_RS16300	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS16315	SM00382	ATPases associated with a variety of cellular activities
TH3_RS16330	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS16330	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS16335	SM00479	TH3_RS16335
TH3_RS16355	SM00382	ATPases associated with a variety of cellular activities
TH3_RS16390	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS16390	SM00419	helix_turn_helix, cAMP Regulatory protein
TH3_RS16395	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS16400	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS16400	SM00419	helix_turn_helix, cAMP Regulatory protein
TH3_RS16450	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS16470	SM00327	von Willebrand factor (vWF) type A domain
TH3_RS16525	SM00382	ATPases associated with a variety of cellular activities
TH3_RS16530	SM00710	Parallel beta-helix repeats
TH3_RS16530	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
TH3_RS16540	SM00900	TH3_RS16540
TH3_RS16545	SM00448	cheY-homologous receiver domain
TH3_RS16545	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS16580	SM00400	zinc finger
TH3_RS16580	SM00493	TH3_RS16580
TH3_RS16590	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
TH3_RS16595	SM00851	MGS-like domain
TH3_RS16595	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
TH3_RS16610	SM00344	helix_turn_helix ASNC type
TH3_RS16635	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS16640	SM00838	Elongation factor G C-terminus
TH3_RS16640	SM00889	Elongation factor G, domain IV
TH3_RS16695	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS16700	SM00487	DEAD-like helicases superfamily
TH3_RS16700	SM00490	helicase superfamily c-terminal domain
TH3_RS16735	SM00829	Enoylreductase
TH3_RS16755	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
TH3_RS16795	SM01400	TH3_RS16795
TH3_RS16855	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TH3_RS16855	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS16865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS16865	SM00895	TH3_RS16865
TH3_RS16875	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS16875	SM00387	Histidine kinase-like ATPases
TH3_RS16875	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS16880	SM00448	cheY-homologous receiver domain
TH3_RS16880	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS16885	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS16945	SM00849	Metallo-beta-lactamase superfamily
TH3_RS16955	SM00419	helix_turn_helix, cAMP Regulatory protein
TH3_RS16970	SM00382	ATPases associated with a variety of cellular activities
TH3_RS16995	SM00822	TH3_RS16995
TH3_RS17020	SM00344	helix_turn_helix ASNC type
TH3_RS17045	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS17055	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
TH3_RS17080	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS17080	SM00529	Helix-turn-helix diphteria tox regulatory element
TH3_RS17090	SM00382	ATPases associated with a variety of cellular activities
TH3_RS17135	SM00853	MutL C terminal dimerisation domain
TH3_RS17135	SM01340	TH3_RS17135
TH3_RS17165	SM00904	Riboflavin kinase
TH3_RS17235	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS17320	SM01058	CarD-like/TRCF domain
TH3_RS17330	SM00052	Putative diguanylate phosphodiesterase
TH3_RS17330	SM00091	PAS domain
TH3_RS17330	SM00267	diguanylate cyclase
TH3_RS17335	SM00448	cheY-homologous receiver domain
TH3_RS17345	SM00091	PAS domain
TH3_RS17345	SM00387	Histidine kinase-like ATPases
TH3_RS17345	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS17350	SM00422	helix_turn_helix, mercury resistance
TH3_RS17430	SM00382	ATPases associated with a variety of cellular activities
TH3_RS17455	SM00382	ATPases associated with a variety of cellular activities
TH3_RS17465	SM00052	Putative diguanylate phosphodiesterase
TH3_RS17465	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TH3_RS17465	SM00091	PAS domain
TH3_RS17465	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS17465	SM00267	diguanylate cyclase
TH3_RS17480	SM00382	ATPases associated with a variety of cellular activities
TH3_RS17525	SM00420	helix_turn_helix, Deoxyribose operon repressor
TH3_RS17525	SM01134	TH3_RS17525
TH3_RS17530	SM01133	TH3_RS17530
TH3_RS17540	SM00382	ATPases associated with a variety of cellular activities
TH3_RS17575	SM00986	Uracil DNA glycosylase superfamily
TH3_RS17575	SM00987	UreE urease accessory protein, C-terminal domain 
TH3_RS17620	SM00028	Tetratricopeptide repeats
TH3_RS17670	SM00857	Resolvase, N terminal domain
TH3_RS17725	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS17850	SM00052	Putative diguanylate phosphodiesterase
TH3_RS17850	SM00267	diguanylate cyclase
TH3_RS17860	SM00829	Enoylreductase
TH3_RS17870	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS17880	SM00996	S-adenosyl-L-homocysteine hydrolase
TH3_RS17880	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
TH3_RS17890	SM01116	TH3_RS17890
TH3_RS17895	SM00382	ATPases associated with a variety of cellular activities
TH3_RS17910	SM00091	PAS domain
TH3_RS17910	SM00382	ATPases associated with a variety of cellular activities
TH3_RS17925	SM00893	Electron transfer flavoprotein domain
TH3_RS17930	SM00893	Electron transfer flavoprotein domain
TH3_RS17970	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS17990	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18005	SM00563	Phosphate acyltransferases
TH3_RS18035	SM00830	Chorismate mutase type II
TH3_RS18075	SM00278	Helix-hairpin-helix DNA-binding motif class 1
TH3_RS18075	SM00465	GIY-YIG type nucleases (URI domain)
TH3_RS18080	SM00905	Dihydroneopterin aldolase
TH3_RS18100	SM00448	cheY-homologous receiver domain
TH3_RS18100	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS18110	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18155	SM00878	Biotin carboxylase C-terminal domain
TH3_RS18160	SM00387	Histidine kinase-like ATPases
TH3_RS18160	SM01049	TH3_RS18160
TH3_RS18165	SM00421	helix_turn_helix, Lux Regulon
TH3_RS18165	SM00448	cheY-homologous receiver domain
TH3_RS18170	SM00100	Cyclic nucleotide-monophosphate binding domain
TH3_RS18200	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS18200	SM00387	Histidine kinase-like ATPases
TH3_RS18200	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS18200	SM00448	cheY-homologous receiver domain
TH3_RS18270	SM00852	Probable molybdopterin binding domain
TH3_RS18285	SM00957	SecA DEAD-like domain
TH3_RS18285	SM00958	SecA preprotein cross-linking domain
TH3_RS18315	SM00448	cheY-homologous receiver domain
TH3_RS18320	SM00448	cheY-homologous receiver domain
TH3_RS18325	SM00091	PAS domain
TH3_RS18325	SM00387	Histidine kinase-like ATPases
TH3_RS18340	SM00344	helix_turn_helix ASNC type
TH3_RS18350	SM00448	cheY-homologous receiver domain
TH3_RS18370	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18400	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18420	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS18430	SM00861	Transketolase, pyrimidine binding domain
TH3_RS18440	SM00091	PAS domain
TH3_RS18440	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18470	SM00829	Enoylreductase
TH3_RS18485	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18495	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS18515	SM00988	UreE urease accessory protein, N-terminal domain
TH3_RS18540	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18545	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18570	SM00849	Metallo-beta-lactamase superfamily
TH3_RS18590	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS18620	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18635	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
TH3_RS18640	SM01092	CO dehydrogenase flavoprotein C-terminal domain
TH3_RS18730	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS18770	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18785	SM00947	Carbonic anhydrase
TH3_RS18815	SM00062	Bacterial periplasmic substrate-binding proteins
TH3_RS18820	SM00487	DEAD-like helicases superfamily
TH3_RS18820	SM00490	helicase superfamily c-terminal domain
TH3_RS18825	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS18825	SM01049	TH3_RS18825
TH3_RS18875	SM00344	helix_turn_helix ASNC type
TH3_RS18905	SM00986	Uracil DNA glycosylase superfamily
TH3_RS18905	SM00987	UreE urease accessory protein, C-terminal domain 
TH3_RS18920	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS18935	SM00382	ATPases associated with a variety of cellular activities
TH3_RS18970	SM00829	Enoylreductase
TH3_RS19025	SM00344	helix_turn_helix ASNC type
TH3_RS19070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS19070	SM00866	TH3_RS19070
TH3_RS19100	SM00897	FIST N domain
TH3_RS19100	SM01204	TH3_RS19100
TH3_RS19120	SM00382	ATPases associated with a variety of cellular activities
TH3_RS19210	SM00464	Found in ATP-dependent protease La (LON)
TH3_RS19235	SM00938	Nitrogen regulatory protein P-II
TH3_RS19255	SM00843	TH3_RS19255
TH3_RS19260	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS19260	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS19260	SM01049	TH3_RS19260
TH3_RS19265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS19265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS19265	SM01049	TH3_RS19265
TH3_RS19330	SM00838	Elongation factor G C-terminus
TH3_RS19335	SM00091	PAS domain
TH3_RS19335	SM00387	Histidine kinase-like ATPases
TH3_RS19335	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS19345	SM00873	B3/4 domain
TH3_RS19345	SM00874	tRNA synthetase B5 domain
TH3_RS19345	SM00896	Ferredoxin-fold anticodon binding domain
TH3_RS19365	SM00448	cheY-homologous receiver domain
TH3_RS19435	SM00798	AICARFT/IMPCHase bienzyme
TH3_RS19435	SM00851	MGS-like domain
TH3_RS19465	SM00316	Ribosomal protein S1-like RNA-binding domain
TH3_RS19465	SM00732	Likely ribonuclease with RNase H fold.
TH3_RS19515	SM01150	TH3_RS19515
TH3_RS19570	SM00422	helix_turn_helix, mercury resistance
TH3_RS19620	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS19655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS19655	SM00895	TH3_RS19655
TH3_RS19680	SM00382	ATPases associated with a variety of cellular activities
TH3_RS19685	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS19685	SM00895	TH3_RS19685
TH3_RS19730	SM00448	cheY-homologous receiver domain
TH3_RS19735	SM00448	cheY-homologous receiver domain
TH3_RS19740	SM00387	Histidine kinase-like ATPases
TH3_RS19750	SM00052	Putative diguanylate phosphodiesterase
TH3_RS19750	SM00448	cheY-homologous receiver domain
TH3_RS19755	SM00421	helix_turn_helix, Lux Regulon
TH3_RS19755	SM00448	cheY-homologous receiver domain
TH3_RS19760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS19760	SM00387	Histidine kinase-like ATPases
TH3_RS19760	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS19765	SM00448	cheY-homologous receiver domain
TH3_RS19765	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS19800	SM00346	helix_turn_helix isocitrate lyase regulation
TH3_RS19820	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS19820	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS19860	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS19860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS19870	SM00382	ATPases associated with a variety of cellular activities
TH3_RS19905	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
TH3_RS19905	SM00474	3'-5' exonuclease
TH3_RS19905	SM00475	5'-3' exonuclease
TH3_RS19905	SM00482	DNA polymerase A domain
TH3_RS19915	SM00271	DnaJ molecular chaperone homology domain
TH3_RS19930	SM00478	endonuclease III
TH3_RS19930	SM00525	TH3_RS19930
TH3_RS19955	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS19975	SM00838	Elongation factor G C-terminus
TH3_RS20000	SM00382	ATPases associated with a variety of cellular activities
TH3_RS20015	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS20020	SM00474	3'-5' exonuclease
TH3_RS20040	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS20070	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
TH3_RS20125	SM00932	Scaffold protein Nfu/NifU N terminal
TH3_RS20130	SM00047	Lysozyme subfamily 2
TH3_RS20145	SM00919	Malic enzyme, NAD binding domain
TH3_RS20145	SM01274	TH3_RS20145
TH3_RS20155	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
TH3_RS20155	SM00534	ATPase domain of DNA mismatch repair MUTS family
TH3_RS20160	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS20185	SM00448	cheY-homologous receiver domain
TH3_RS20185	SM00862	Transcriptional regulatory protein, C terminal
TH3_RS20240	SM00470	ParB-like nuclease domain
TH3_RS20255	SM01228	TH3_RS20255
TH3_RS20285	SM00829	Enoylreductase
TH3_RS20290	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS20295	SM00357	Cold shock protein domain
TH3_RS20295	SM00382	ATPases associated with a variety of cellular activities
TH3_RS20295	SM00959	Rho termination factor, N-terminal domain
TH3_RS20300	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS20300	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS20305	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS20310	SM00463	Small MutS-related domain
TH3_RS20325	SM00479	TH3_RS20325
TH3_RS20375	SM00978	TH3_RS20375
TH3_RS20380	SM00925	MltA specific insert domain
TH3_RS20385	SM00886	Stress responsive A/B Barrel Domain
TH3_RS20440	SM00347	helix_turn_helix multiple antibiotic resistance protein
TH3_RS20460	SM00382	ATPases associated with a variety of cellular activities
TH3_RS20485	SM00822	TH3_RS20485
TH3_RS20560	SM00382	ATPases associated with a variety of cellular activities
TH3_RS20560	SM01086	C-terminal, D2-small domain, of ClpB protein
TH3_RS20565	SM00387	Histidine kinase-like ATPases
TH3_RS20565	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS20625	SM00354	helix_turn _helix lactose operon repressor
TH3_RS20650	SM00382	ATPases associated with a variety of cellular activities
TH3_RS20685	SM00563	Phosphate acyltransferases
TH3_RS20690	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS20705	SM00116	Domain in cystathionine beta-synthase and other proteins.
TH3_RS20705	SM01091	Transporter associated domain
TH3_RS20715	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS20740	SM00965	Secretin and TonB N terminus short domain
TH3_RS20750	SM00382	ATPases associated with a variety of cellular activities
TH3_RS20770	SM00316	Ribosomal protein S1-like RNA-binding domain
TH3_RS20770	SM00322	K homology RNA-binding domain
TH3_RS20795	SM01387	TH3_RS20795
TH3_RS20800	SM00316	Ribosomal protein S1-like RNA-binding domain
TH3_RS20800	SM00322	K homology RNA-binding domain
TH3_RS20825	SM00382	ATPases associated with a variety of cellular activities
TH3_RS20850	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS20850	SM00895	TH3_RS20850
TH3_RS20870	SM00729	Elongator protein 3, MiaB family, Radical SAM
TH3_RS20870	SM00876	Biotin and Thiamin Synthesis associated domain
TH3_RS20880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
TH3_RS20880	SM00895	TH3_RS20880
TH3_RS20890	SM00460	Transglutaminase/protease-like homologues
TH3_RS20970	SM00855	Phosphoglycerate mutase family
TH3_RS21030	SM00028	Tetratricopeptide repeats
TH3_RS21045	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS21045	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS21080	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
TH3_RS21080	SM00091	PAS domain
TH3_RS21080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS21085	SM00849	Metallo-beta-lactamase superfamily
TH3_RS21100	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS21125	SM00028	Tetratricopeptide repeats
TH3_RS21150	SM00316	Ribosomal protein S1-like RNA-binding domain
TH3_RS21160	SM00411	bacterial (prokaryotic) histone like domain
TH3_RS21170	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
TH3_RS21185	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
TH3_RS21185	SM01232	TH3_RS21185
TH3_RS22180	SM00855	Phosphoglycerate mutase family
TH3_RS22185	SM00857	Resolvase, N terminal domain
TH3_RS22190	SM01040	BRO family, N-terminal domain
TH3_RS22205	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
TH3_RS22215	SM01359	TH3_RS22215
TH3_RS22215	SM01360	TH3_RS22215
TH3_RS22225	SM00138	Methyltransferase, chemotaxis proteins 
TH3_RS22245	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS22265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS22265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS22275	SM00671	Sel1-like repeats.
TH3_RS22280	SM00869	Autotransporter beta-domain
TH3_RS22290	SM00387	Histidine kinase-like ATPases
TH3_RS22290	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS22290	SM00448	cheY-homologous receiver domain
TH3_RS22315	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS22315	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS22320	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS22320	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
TH3_RS22330	SM00387	Histidine kinase-like ATPases
TH3_RS22330	SM00388	His Kinase A (phosphoacceptor) domain
TH3_RS22370	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
TH3_RS22395	SM00422	helix_turn_helix, mercury resistance
TH3_RS22405	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
TH3_RS22415	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS22430	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS22440	SM01040	BRO family, N-terminal domain
TH3_RS22455	SM00244	prohibitin homologues
TH3_RS22465	SM00342	helix_turn_helix, arabinose operon control protein
TH3_RS22470	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
TH3_RS22485	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
TH3_RS22490	SM01358	TH3_RS22490
TH3_RS22510	SM00530	Helix-turn-helix XRE-family like proteins 
TH3_RS22515	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
