locus-tag	class	description
LT090_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LT090_RS00020	COG0187	DNA topoisomerase II activity
LT090_RS00030	COG0751	glycine-tRNA ligase activity
LT090_RS00035	COG0425	Belongs to the sulfur carrier protein TusA family
LT090_RS00040	COG0006	proline dipeptidase activity
LT090_RS00045	COG1739	Uncharacterized protein family UPF0029
LT090_RS00050	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LT090_RS00055	COG0569	domain protein
LT090_RS00060	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LT090_RS00060	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LT090_RS00075	COG1652	LysM domain
LT090_RS00080	COG0758	DNA mediated transformation
LT090_RS00085	COG2922	Belongs to the Smg family
LT090_RS00095	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LT090_RS00100	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LT090_RS00105	COG0318	PFAM AMP-dependent synthetase and ligase
LT090_RS00115	COG0408	coproporphyrinogen oxidase activity
LT090_RS00120	COG3083	sulfuric ester hydrolase activity
LT090_RS00125	COG3047	cAMP biosynthetic process
LT090_RS00140	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LT090_RS00190	COG0295	cytidine deaminase activity
LT090_RS00240	COG1946	Acyl-CoA thioesterase
LT090_RS00245	COG0668	transmembrane transport
LT090_RS00250	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LT090_RS00255	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LT090_RS00260	COG0252	asparaginase activity
LT090_RS00265	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LT090_RS00270	COG0583	DNA-binding transcription factor activity
LT090_RS00280	COG0606	chelatase, subunit chli
LT090_RS00290	COG0129	dihydroxy-acid dehydratase activity
LT090_RS00310	COG3706	GGDEF domain
LT090_RS00325	COG2177	Part of the ABC transporter FtsEX involved in
LT090_RS00330	COG2884	Cell division ATP-binding protein ftsE
LT090_RS00335	COG0552	protein localization to endoplasmic reticulum
LT090_RS00340	COG0742	ribosomal rna small subunit methyltransferase
LT090_RS00350	COG3068	Protein conserved in bacteria
LT090_RS00360	COG1162	GTPase activity
LT090_RS00370	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LT090_RS00400	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
LT090_RS00410	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LT090_RS00420	COG1187	pseudouridine synthase activity
LT090_RS00435	COG0431	NADPH-dependent FMN reductase
LT090_RS00440	COG1929	Belongs to the glycerate kinase type-1 family
LT090_RS00445	COG2183	response to ionizing radiation
LT090_RS00450	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LT090_RS00470	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LT090_RS00475	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LT090_RS00480	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LT090_RS00485	COG3031	protein transport across the cell outer membrane
LT090_RS00495	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LT090_RS00500	COG1459	type II secretion system
LT090_RS00505	COG2165	general secretion pathway protein
LT090_RS00515	COG2165	general secretion pathway protein
LT090_RS00520	COG4795	General secretion pathway protein
LT090_RS00525	COG3156	type II secretion system protein K
LT090_RS00535	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
LT090_RS00545	COG0584	glycerophosphoryl diester phosphodiesterase
LT090_RS00550	COG0688	phosphatidylethanolamine metabolic process
LT090_RS00560	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LT090_RS00575	COG3118	belongs to the thioredoxin family
LT090_RS00585	COG0248	Ppx GppA phosphatase
LT090_RS00605	COG0084	hydrolase, TatD family'
LT090_RS00615	COG0805	protein transport
LT090_RS00620	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LT090_RS00645	COG2226	methyltransferase
LT090_RS00650	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LT090_RS00655	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LT090_RS00665	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LT090_RS00670	COG1758	RNA polymerase activity
LT090_RS00675	COG0194	GDP metabolic process
LT090_RS00690	COG1448	Aminotransferase
LT090_RS00710	COG0833	amino acid
LT090_RS00725	COG0668	transmembrane transport
LT090_RS00730	COG1960	acyl-CoA dehydrogenase activity
LT090_RS00735	COG1380	Effector of murein hydrolase LrgA
LT090_RS00740	COG1346	cytolysis
LT090_RS00780	COG3132	Protein of unknown function, DUF480
LT090_RS00785	COG1561	YicC-like family, N-terminal region
LT090_RS00805	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
LT090_RS00810	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LT090_RS00815	COG2963	transposase activity
LT090_RS00820	COG2801	Transposase and inactivated derivatives
LT090_RS00850	COG0596	Alpha beta hydrolase
LT090_RS00855	COG1040	competence protein
LT090_RS00865	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
LT090_RS00865	COG0316	Belongs to the HesB IscA family
LT090_RS00870	COG2814	Major facilitator Superfamily
LT090_RS00875	COG0534	Mate efflux family protein
LT090_RS00880	COG0726	polysaccharide deacetylase
LT090_RS00880	COG1649	PFAM Uncharacterised BCR, COG1649
LT090_RS00885	COG0625	glutathione transferase activity
LT090_RS00890	COG0217	transcriptional regulatory protein
LT090_RS00895	COG1999	signal sequence binding
LT090_RS00900	COG0109	protoheme IX farnesyltransferase activity
LT090_RS00905	COG1612	heme a metabolic process
LT090_RS00930	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
LT090_RS00935	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LT090_RS00940	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LT090_RS00950	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LT090_RS00980	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LT090_RS00985	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LT090_RS00990	COG0338	D12 class N6 adenine-specific DNA methyltransferase
LT090_RS01005	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LT090_RS01020	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LT090_RS01030	COG2315	Protein conserved in bacteria
LT090_RS01040	COG2264	protein methyltransferase activity
LT090_RS01050	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LT090_RS01055	COG0138	bifunctional purine biosynthesis protein purh
LT090_RS01065	COG0151	Belongs to the GarS family
LT090_RS01100	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LT090_RS01115	COG2814	Major facilitator Superfamily
LT090_RS01125	COG1131	(ABC) transporter
LT090_RS01130	COG0842	Transport permease protein
LT090_RS01135	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LT090_RS01140	COG0076	glutamate decarboxylase activity
LT090_RS01145	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LT090_RS01150	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LT090_RS01155	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LT090_RS01190	COG1131	(ABC) transporter
LT090_RS01200	COG0668	transmembrane transport
LT090_RS01210	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LT090_RS01215	COG1643	Atp-dependent helicase
LT090_RS01220	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LT090_RS01225	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LT090_RS01245	COG1730	sister chromatid segregation
LT090_RS01270	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LT090_RS01275	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LT090_RS01280	COG1944	ATP diphosphatase activity
LT090_RS01285	COG1765	OsmC-like protein
LT090_RS01295	COG1012	belongs to the aldehyde dehydrogenase family
LT090_RS01305	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LT090_RS01320	COG0633	Ferredoxin
LT090_RS01320	COG3217	Mosc domain protein beta barrel domain protein
LT090_RS01325	COG2814	Major facilitator Superfamily
LT090_RS01330	COG1404	Belongs to the peptidase S8 family
LT090_RS01335	COG1404	Belongs to the peptidase S8 family
LT090_RS01345	COG0439	Biotin carboxylase
LT090_RS01350	COG0511	ligase activity, forming carbon-carbon bonds
LT090_RS01355	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LT090_RS01360	COG4232	protein-disulfide reductase activity
LT090_RS01365	COG1324	tolerance protein
LT090_RS01370	COG3030	protein affecting phage T7 exclusion by the F plasmid
LT090_RS01375	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LT090_RS01385	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LT090_RS01395	COG0659	secondary active sulfate transmembrane transporter activity
LT090_RS01400	COG0583	DNA-binding transcription factor activity
LT090_RS01415	COG1863	multisubunit Na H antiporter MnhE subunit
LT090_RS01420	COG2212	antiporter activity
LT090_RS01425	COG1320	monovalent cation:proton antiporter activity
LT090_RS01435	COG1006	Multisubunit Na H antiporter MnhC subunit
LT090_RS01440	COG0651	ATP synthesis coupled electron transport
LT090_RS01445	COG0651	ATP synthesis coupled electron transport
LT090_RS01455	COG0651	ATP synthesis coupled electron transport
LT090_RS01485	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LT090_RS01490	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LT090_RS01505	COG3852	Histidine kinase
LT090_RS01515	COG0174	glutamine synthetase
LT090_RS01525	COG1217	gtp-binding protein TYPA
LT090_RS01530	COG0010	Belongs to the arginase family
LT090_RS01535	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LT090_RS01570	COG1295	ribonuclease BN
LT090_RS01580	COG1490	D-aminoacyl-tRNA deacylase activity
LT090_RS01585	COG0456	acetyltransferase
LT090_RS01590	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LT090_RS01620	COG0330	HflC and HflK could
LT090_RS01630	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LT090_RS01640	COG2188	Transcriptional regulator
LT090_RS01655	COG1472	Belongs to the glycosyl hydrolase 3 family
LT090_RS01665	COG1472	Belongs to the glycosyl hydrolase 3 family
LT090_RS01675	COG2211	Major facilitator Superfamily
LT090_RS01690	COG2819	hydrolase of the alpha beta superfamily
LT090_RS01730	COG3250	beta-galactosidase activity
LT090_RS01735	COG1012	belongs to the aldehyde dehydrogenase family
LT090_RS01740	COG4948	Mandelate Racemase Muconate Lactonizing
LT090_RS01755	COG1802	Transcriptional regulator
LT090_RS01765	COG3250	beta-galactosidase activity
LT090_RS01770	COG3119	arylsulfatase activity
LT090_RS01790	COG3119	arylsulfatase activity
LT090_RS01805	COG3119	arylsulfatase activity
LT090_RS01810	COG3119	arylsulfatase activity
LT090_RS01835	COG3609	addiction module antidote protein, CC2985 family
LT090_RS01845	COG3250	beta-galactosidase activity
LT090_RS01860	COG3119	arylsulfatase activity
LT090_RS01865	COG3119	arylsulfatase activity
LT090_RS01865	COG3408	Glycogen debranching enzyme
LT090_RS01870	COG3119	arylsulfatase activity
LT090_RS01905	COG3119	arylsulfatase activity
LT090_RS01910	COG3119	arylsulfatase activity
LT090_RS01915	COG2706	6-phosphogluconolactonase activity
LT090_RS01920	COG3119	arylsulfatase activity
LT090_RS01930	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LT090_RS01940	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LT090_RS01970	COG0250	Participates in transcription elongation, termination and antitermination
LT090_RS01980	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LT090_RS01985	COG0081	regulation of translation
LT090_RS01990	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LT090_RS02000	COG0085	RNA polymerase activity
LT090_RS02005	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LT090_RS02010	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LT090_RS02015	COG0049	tRNA binding
LT090_RS02020	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LT090_RS02025	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LT090_RS02030	COG0668	transmembrane transport
LT090_RS02055	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LT090_RS02060	COG3314	Sporulation integral membrane protein YlbJ
LT090_RS02065	COG1902	pentaerythritol trinitrate reductase activity
LT090_RS02065	COG0446	pyridine nucleotide-disulphide oxidoreductase
LT090_RS02070	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LT090_RS02080	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LT090_RS02085	COG0051	transcription antitermination factor activity, RNA binding
LT090_RS02090	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LT090_RS02095	COG0088	Forms part of the polypeptide exit tunnel
LT090_RS02100	COG0089	rRNA binding
LT090_RS02105	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LT090_RS02110	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LT090_RS02115	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LT090_RS02120	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LT090_RS02125	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LT090_RS02130	COG0255	Belongs to the universal ribosomal protein uL29 family
LT090_RS02135	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LT090_RS02150	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LT090_RS02155	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LT090_RS02165	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LT090_RS02170	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LT090_RS02175	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LT090_RS02180	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LT090_RS02185	COG1841	ribosomal large subunit assembly
LT090_RS02190	COG0200	Binds to the 23S rRNA
LT090_RS02195	COG0201	protein transport
LT090_RS02200	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LT090_RS02205	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LT090_RS02210	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LT090_RS02215	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LT090_RS02220	COG0202	RNA polymerase activity
LT090_RS02225	COG0203	ribosomal protein L17
LT090_RS02230	COG3954	Phosphoribulokinase
LT090_RS02240	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LT090_RS02245	COG0540	Belongs to the ATCase OTCase family
LT090_RS02250	COG1981	membrane
LT090_RS02265	COG0316	Belongs to the HesB IscA family
LT090_RS02295	COG0557	exoribonuclease II activity
LT090_RS02300	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LT090_RS02305	COG0360	Binds together with S18 to 16S ribosomal RNA
LT090_RS02315	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LT090_RS02320	COG0359	binds to the 23S rRNA
LT090_RS02325	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LT090_RS02350	COG4796	Type ii and iii secretion system protein
LT090_RS02355	COG3267	Type II secretory pathway component ExeA
LT090_RS02355	COG3409	Peptidoglycan-binding domain 1 protein
LT090_RS02365	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LT090_RS02370	COG1459	type II secretion system
LT090_RS02380	COG2165	general secretion pathway protein
LT090_RS02385	COG2165	general secretion pathway protein
LT090_RS02425	COG1077	Cell shape determining protein MreB Mrl
LT090_RS02430	COG1792	Involved in formation and maintenance of cell shape
LT090_RS02435	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LT090_RS02440	COG0424	maF-like protein
LT090_RS02445	COG1530	ribonuclease E activity
LT090_RS02455	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LT090_RS02460	COG0312	modulator of DNA gyrase
LT090_RS02465	COG3028	Belongs to the UPF0307 family
LT090_RS02470	COG0312	modulator of DNA gyrase
LT090_RS02475	COG2239	Acts as a magnesium transporter
LT090_RS02480	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LT090_RS02485	COG1660	Displays ATPase and GTPase activities
LT090_RS02495	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LT090_RS02500	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LT090_RS02505	COG1137	ATPase activity
LT090_RS02520	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LT090_RS02540	COG1127	ABC transporter
LT090_RS02545	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LT090_RS02550	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LT090_RS02555	COG2854	intermembrane phospholipid transfer
LT090_RS02565	COG5007	Belongs to the BolA IbaG family
LT090_RS02570	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LT090_RS02575	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LT090_RS02580	COG1045	serine acetyltransferase
LT090_RS02590	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LT090_RS02600	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LT090_RS02605	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LT090_RS02610	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LT090_RS02615	COG0723	plastoquinol--plastocyanin reductase activity
LT090_RS02620	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LT090_RS02625	COG2857	Cytochrome c1
LT090_RS02630	COG0625	glutathione transferase activity
LT090_RS02635	COG2969	positive regulation of protein catabolic process
LT090_RS02640	COG2823	Periplasmic or secreted lipoprotein
LT090_RS02645	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LT090_RS02665	COG0625	glutathione transferase activity
LT090_RS02680	COG0281	malic enzyme
LT090_RS02685	COG5002	protein histidine kinase activity
LT090_RS02685	COG2205	protein histidine kinase activity
LT090_RS02685	COG0784	Response regulator, receiver
LT090_RS02690	COG0166	Belongs to the GPI family
LT090_RS02695	COG2001	Belongs to the MraZ family
LT090_RS02700	COG0275	rRNA processing
LT090_RS02705	COG3116	cell division
LT090_RS02710	COG0768	penicillin binding
LT090_RS02715	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LT090_RS02720	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LT090_RS02725	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LT090_RS02735	COG0772	Belongs to the SEDS family
LT090_RS02745	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LT090_RS02755	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LT090_RS02760	COG0849	cell division
LT090_RS02765	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LT090_RS02770	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
LT090_RS02785	COG0739	heme binding
LT090_RS02790	COG0653	protein targeting
LT090_RS02800	COG0583	DNA-binding transcription factor activity
LT090_RS02815	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
LT090_RS02820	COG0237	dephospho-CoA kinase activity
LT090_RS02825	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LT090_RS02830	COG1459	type II secretion system
LT090_RS02835	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LT090_RS02840	COG4969	Belongs to the N-Me-Phe pilin family
LT090_RS02855	COG3023	N-Acetylmuramoyl-L-alanine amidase
LT090_RS02870	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LT090_RS02875	COG0508	dehydrogenase complex catalyzes the overall conversion of
LT090_RS02880	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LT090_RS02885	COG1049	propionate catabolic process, 2-methylcitrate cycle
LT090_RS02900	COG1566	PFAM secretion protein HlyD family protein
LT090_RS02920	COG3112	Uncharacterised protein family (UPF0231)
LT090_RS02925	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LT090_RS02940	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LT090_RS02950	COG2366	antibiotic biosynthetic process
LT090_RS02960	COG0004	ammonium transporteR
LT090_RS03000	COG1376	ErfK ybiS ycfS ynhG family protein
LT090_RS03000	COG1388	LysM domain
LT090_RS03010	COG4948	Mandelate Racemase Muconate Lactonizing
LT090_RS03020	COG3040	lipid binding
LT090_RS03030	COG3618	amidohydrolase
LT090_RS03075	COG2827	Endonuclease containing a URI domain
LT090_RS03095	COG1793	dna ligase
LT090_RS03100	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LT090_RS03100	COG0116	Belongs to the methyltransferase superfamily
LT090_RS03105	COG0733	neurotransmitter:sodium symporter activity
LT090_RS03115	COG1196	nuclear chromosome segregation
LT090_RS03115	COG0741	lytic transglycosylase activity
LT090_RS03115	COG0739	heme binding
LT090_RS03135	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LT090_RS03140	COG4628	conserved protein (DUF2132)
LT090_RS03160	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LT090_RS03165	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LT090_RS03295	COG1610	YqeY-like protein
LT090_RS03300	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LT090_RS03305	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LT090_RS03310	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LT090_RS03315	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LT090_RS03325	COG1968	undecaprenyl-diphosphatase activity
LT090_RS03330	COG0617	tRNA 3'-terminal CCA addition
LT090_RS03335	COG3409	Peptidoglycan-binding domain 1 protein
LT090_RS03335	COG3267	Type II secretory pathway component ExeA
LT090_RS03345	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LT090_RS03355	COG0066	3-isopropylmalate dehydratase activity
LT090_RS03360	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LT090_RS03365	COG0473	3-isopropylmalate dehydrogenase activity
LT090_RS03370	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LT090_RS03390	COG4991	sh3 domain protein
LT090_RS03395	COG3025	triphosphatase activity
LT090_RS03425	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LT090_RS03445	COG1560	Kdo2-lipid A biosynthetic process
LT090_RS03450	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LT090_RS03450	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LT090_RS03460	COG2837	iron assimilation
LT090_RS03470	COG2967	ApaG domain
LT090_RS03475	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LT090_RS03480	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LT090_RS03485	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LT090_RS03490	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LT090_RS03500	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LT090_RS03505	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LT090_RS03515	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LT090_RS03520	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LT090_RS03525	COG1960	acyl-CoA dehydrogenase activity
LT090_RS03550	COG2205	protein histidine kinase activity
LT090_RS03555	COG0745	RESPONSE REGULATOR receiver
LT090_RS03575	COG2801	Transposase and inactivated derivatives
LT090_RS03580	COG2963	transposase activity
LT090_RS03600	COG3141	response to X-ray
LT090_RS03610	COG0460	homoserine dehydrogenase
LT090_RS03610	COG0527	aspartate kinase activity
LT090_RS03615	COG0083	homoserine kinase activity
LT090_RS03620	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LT090_RS03625	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LT090_RS03635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LT090_RS03655	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LT090_RS03690	COG0281	malic enzyme
LT090_RS03695	COG0786	glutamate:sodium symporter activity
LT090_RS03700	COG1301	dicarboxylic acid transport
LT090_RS03710	COG0105	UTP biosynthetic process
LT090_RS03715	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LT090_RS03720	COG0457	Tetratricopeptide repeat
LT090_RS03730	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LT090_RS03735	COG0124	histidyl-tRNA synthetase
LT090_RS03740	COG2976	Protein conserved in bacteria
LT090_RS03745	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LT090_RS03750	COG1160	GTP binding
LT090_RS03760	COG1570	exodeoxyribonuclease VII activity
LT090_RS03765	COG0517	IMP dehydrogenase activity
LT090_RS03765	COG0516	GMP reductase activity
LT090_RS03770	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LT090_RS03770	COG0519	Catalyzes the synthesis of GMP from XMP
LT090_RS03785	COG1166	arginine decarboxylase activity
LT090_RS03790	COG0010	Belongs to the arginase family
LT090_RS03800	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LT090_RS03870	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LT090_RS03875	COG0745	RESPONSE REGULATOR receiver
LT090_RS03880	COG5002	protein histidine kinase activity
LT090_RS03890	COG3111	PFAM Bacterial OB fold (BOF) protein
LT090_RS03905	COG5499	transcription regulator containing HTH domain
LT090_RS03910	COG4680	protein conserved in bacteria
LT090_RS03920	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LT090_RS03925	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LT090_RS03930	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
LT090_RS03940	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LT090_RS03945	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LT090_RS03950	COG1238	metal cluster binding
LT090_RS03965	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LT090_RS03970	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LT090_RS03980	COG0646	methionine synthase
LT090_RS03980	COG1410	methionine synthase
LT090_RS03985	COG4946	Tricorn protease homolog
LT090_RS03985	COG0793	Belongs to the peptidase S41A family
LT090_RS03995	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LT090_RS04000	COG0527	aspartate kinase activity
LT090_RS04005	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LT090_RS04045	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
LT090_RS04055	COG0513	Belongs to the DEAD box helicase family
LT090_RS04070	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LT090_RS04090	COG0271	Belongs to the BolA IbaG family
LT090_RS04105	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
LT090_RS04110	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LT090_RS04115	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LT090_RS04120	COG1805	sodium ion transport
LT090_RS04125	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LT090_RS04130	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LT090_RS04135	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LT090_RS04140	COG2871	sodium ion transport
LT090_RS04145	COG0259	pyridoxamine-phosphate oxidase activity
LT090_RS04150	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LT090_RS04155	COG4242	Belongs to the peptidase S51 family
LT090_RS04160	COG1181	Belongs to the D-alanine--D-alanine ligase family
LT090_RS04160	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LT090_RS04165	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LT090_RS04175	COG2203	Gaf domain
LT090_RS04175	COG4251	negative regulation of phosphorylation
LT090_RS04175	COG5001	Diguanylate cyclase
LT090_RS04175	COG3706	GGDEF domain
LT090_RS04215	COG0564	pseudouridine synthase activity
LT090_RS04220	COG1757	Na H antiporter
LT090_RS04230	COG3604	Transcriptional regulator
LT090_RS04245	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LT090_RS04245	COG1017	nitric oxide dioxygenase activity
LT090_RS04265	COG4536	flavin adenine dinucleotide binding
LT090_RS04275	COG0701	Predicted permease
LT090_RS04280	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LT090_RS04290	COG0697	spore germination
LT090_RS04295	COG0228	four-way junction DNA binding
LT090_RS04300	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LT090_RS04305	COG0336	Belongs to the RNA methyltransferase TrmD family
LT090_RS04310	COG0335	large ribosomal subunit rRNA binding
LT090_RS04335	COG3119	arylsulfatase activity
LT090_RS04340	COG3119	arylsulfatase activity
LT090_RS04345	COG3119	arylsulfatase activity
LT090_RS04350	COG3119	arylsulfatase activity
LT090_RS04360	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LT090_RS04360	COG2885	chlorophyll binding
LT090_RS04365	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LT090_RS04370	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LT090_RS04375	COG0287	Prephenate dehydrogenase
LT090_RS04375	COG1605	Chorismate mutase
LT090_RS04395	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LT090_RS04400	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LT090_RS04430	COG0077	Prephenate dehydratase
LT090_RS04430	COG1605	Chorismate mutase
LT090_RS04435	COG3122	Protein conserved in bacteria
LT090_RS04445	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LT090_RS04450	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
LT090_RS04455	COG0564	pseudouridine synthase activity
LT090_RS04480	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LT090_RS04490	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LT090_RS04495	COG1595	DNA-templated transcription, initiation
LT090_RS04505	COG3026	antisigma factor binding
LT090_RS04515	COG0481	GTPase activity
LT090_RS04525	COG0571	ribonuclease III activity
LT090_RS04530	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LT090_RS04535	COG1381	Involved in DNA repair and RecF pathway recombination
LT090_RS04540	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LT090_RS04550	COG4999	Histidine kinase
LT090_RS04550	COG3850	Histidine kinase
LT090_RS04550	COG3437	response regulator, receiver
LT090_RS04550	COG2205	protein histidine kinase activity
LT090_RS04560	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LT090_RS04565	COG3956	TIGRFAM MazG family protein
LT090_RS04575	COG0432	Pfam Uncharacterised protein family UPF0047
LT090_RS04580	COG0504	CTP synthase activity
LT090_RS04590	COG2814	Major facilitator Superfamily
LT090_RS04635	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LT090_RS04635	COG0047	phosphoribosylformylglycinamidine synthase activity
LT090_RS04640	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LT090_RS04645	COG0590	tRNA wobble adenosine to inosine editing
LT090_RS04655	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LT090_RS04660	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LT090_RS04670	COG0762	integral membrane protein
LT090_RS04675	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LT090_RS04680	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LT090_RS04695	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LT090_RS04700	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LT090_RS04705	COG0189	ligase activity
LT090_RS04715	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LT090_RS04720	COG5002	protein histidine kinase activity
LT090_RS04720	COG5001	Diguanylate cyclase
LT090_RS04720	COG3447	MASE1 domain protein
LT090_RS04725	COG3706	GGDEF domain
LT090_RS04740	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LT090_RS04745	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LT090_RS04775	COG0544	peptidyl-prolyl cis-trans isomerase activity
LT090_RS04780	COG0740	serine-type endopeptidase activity
LT090_RS04785	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LT090_RS04790	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LT090_RS04800	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LT090_RS04810	COG4172	Belongs to the ABC transporter superfamily
LT090_RS04815	COG4171	peptide transport system, permease
LT090_RS04820	COG4168	peptide transport system, permease
LT090_RS04825	COG0747	negative chemotaxis
LT090_RS04830	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LT090_RS04835	COG1842	Phage shock protein A
LT090_RS04845	COG1983	PspC domain protein
LT090_RS04850	COG3106	COG3106 Predicted ATPase
LT090_RS04855	COG3768	UPF0283 membrane protein
LT090_RS04865	COG2154	pterin-4-alpha-carbinolamine dehydratase
LT090_RS04875	COG0625	glutathione transferase activity
LT090_RS04910	COG0811	peptide transport
LT090_RS04915	COG0811	peptide transport
LT090_RS04920	COG0848	biopolymer transport protein
LT090_RS04940	COG0288	reversible hydration of carbon dioxide
LT090_RS04945	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LT090_RS04960	COG0135	phosphoribosylanthranilate isomerase activity
LT090_RS04960	COG0134	indole-3-glycerol-phosphate synthase activity
LT090_RS04975	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LT090_RS04985	COG0009	L-threonylcarbamoyladenylate synthase
LT090_RS04995	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LT090_RS05000	COG1187	pseudouridine synthase activity
LT090_RS05035	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LT090_RS05045	COG3108	Peptidase M15
LT090_RS05055	COG4771	TonB-dependent receptor
LT090_RS05070	COG1858	cytochrome C peroxidase
LT090_RS05080	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LT090_RS05110	COG1215	transferase activity, transferring glycosyl groups
LT090_RS05115	COG0071	Belongs to the small heat shock protein (HSP20) family
LT090_RS05125	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LT090_RS05130	COG1574	metal-dependent hydrolase with the TIM-barrel fold
LT090_RS05135	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LT090_RS05140	COG4535	Mg2 and Co2 transporter CorC
LT090_RS05150	COG1702	phosphate starvation-inducible protein PhoH
LT090_RS05155	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LT090_RS05165	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LT090_RS05220	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LT090_RS05225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LT090_RS05240	COG0166	Belongs to the GPI family
LT090_RS05245	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LT090_RS05270	COG2971	BadF BadG BcrA BcrD
LT090_RS05280	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LT090_RS05285	COG0738	Major facilitator superfamily
LT090_RS05325	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LT090_RS05330	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LT090_RS05360	COG1115	amino acid carrier protein
LT090_RS05365	COG0513	Belongs to the DEAD box helicase family
LT090_RS05375	COG3710	Transcriptional regulator
LT090_RS05395	COG4770	biotin carboxylase activity
LT090_RS05400	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LT090_RS05405	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LT090_RS05410	COG1960	acyl-CoA dehydrogenase activity
LT090_RS05415	COG0789	Transcriptional regulator
LT090_RS05420	COG0183	Belongs to the thiolase family
LT090_RS05425	COG1960	acyl-CoA dehydrogenase activity
LT090_RS05430	COG1024	Enoyl-CoA hydratase
LT090_RS05445	COG1028	Short-chain dehydrogenase reductase Sdr
LT090_RS05450	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LT090_RS05490	COG3119	arylsulfatase activity
LT090_RS05500	COG3119	arylsulfatase activity
LT090_RS05510	COG3119	arylsulfatase activity
LT090_RS05525	COG3119	arylsulfatase activity
LT090_RS05535	COG4953	penicillin-binding protein 1C
LT090_RS05550	COG0123	including yeast histone deacetylase and acetoin utilization protein
LT090_RS05555	COG1064	alcohol dehydrogenase
LT090_RS05605	COG0602	queuosine metabolic process
LT090_RS05610	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LT090_RS05615	COG0514	ATP-dependent DNA helicase (RecQ)
LT090_RS05635	COG0514	ATP-dependent DNA helicase (RecQ)
LT090_RS05670	COG0720	synthase
LT090_RS05680	COG0302	gtp cyclohydrolase
LT090_RS05755	COG1278	Cold shock
LT090_RS05795	COG2072	flavoprotein involved in K transport
LT090_RS05820	COG0440	acetolactate synthase activity
LT090_RS05825	COG0028	Belongs to the TPP enzyme family
LT090_RS05830	COG3724	N-succinylarginine dihydrolase activity
LT090_RS05835	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LT090_RS05840	COG4206	TonB-dependent receptor
LT090_RS05850	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
LT090_RS05855	COG1492	cobalamin metabolic process
LT090_RS05870	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
LT090_RS05875	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LT090_RS05880	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LT090_RS05885	COG1120	ATPase activity
LT090_RS05890	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LT090_RS05895	COG0436	Aminotransferase
LT090_RS05905	COG0442	prolyl-tRNA aminoacylation
LT090_RS05915	COG1054	Belongs to the UPF0176 family
LT090_RS05920	COG1720	tRNA m6t6A37 methyltransferase activity
LT090_RS05945	COG0346	lactoylglutathione lyase activity
LT090_RS05950	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LT090_RS05955	COG4660	Part of a membrane complex involved in electron transport
LT090_RS05960	COG4659	FMN binding
LT090_RS05965	COG4658	electron transport chain
LT090_RS05970	COG4656	Part of a membrane complex involved in electron transport
LT090_RS05975	COG2878	Part of a membrane complex involved in electron transport
LT090_RS05980	COG4657	Part of a membrane complex involved in electron transport
LT090_RS05985	COG4943	cyclic-guanylate-specific phosphodiesterase activity
LT090_RS05990	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LT090_RS05995	COG1253	flavin adenine dinucleotide binding
LT090_RS06005	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LT090_RS06010	COG0515	serine threonine protein kinase
LT090_RS06025	COG0232	Belongs to the dGTPase family. Type 2 subfamily
LT090_RS06035	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LT090_RS06040	COG2226	methyltransferase
LT090_RS06045	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LT090_RS06050	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LT090_RS06060	COG0632	four-way junction helicase activity
LT090_RS06065	COG2255	four-way junction helicase activity
LT090_RS06080	COG0824	Thioesterase
LT090_RS06085	COG0811	peptide transport
LT090_RS06100	COG0823	Involved in the tonB-independent uptake of proteins
LT090_RS06105	COG2885	chlorophyll binding
LT090_RS06135	COG0625	glutathione transferase activity
LT090_RS06145	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LT090_RS06160	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
LT090_RS06165	COG0730	response to heat
LT090_RS06175	COG1136	(ABC) transporter
LT090_RS06180	COG0577	efflux transmembrane transporter activity
LT090_RS06235	COG3098	single-species biofilm formation
LT090_RS06245	COG1278	Cold shock
LT090_RS06250	COG1022	Amp-dependent synthetase and ligase
LT090_RS06255	COG0012	GTP binding
LT090_RS06260	COG0193	aminoacyl-tRNA hydrolase activity
LT090_RS06265	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LT090_RS06270	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LT090_RS06275	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LT090_RS06280	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LT090_RS06285	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LT090_RS06290	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LT090_RS06295	COG2890	protein-(glutamine-N5) methyltransferase activity
LT090_RS06300	COG1028	Short-chain dehydrogenase reductase Sdr
LT090_RS06310	COG0616	signal peptide processing
LT090_RS06320	COG1301	dicarboxylic acid transport
LT090_RS06350	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LT090_RS06355	COG1760	l-serine dehydratase
LT090_RS06360	COG0494	nUDIX hydrolase
LT090_RS06365	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LT090_RS06375	COG0823	Involved in the tonB-independent uptake of proteins
LT090_RS06375	COG1506	peptidase
LT090_RS06385	COG0733	neurotransmitter:sodium symporter activity
LT090_RS06390	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LT090_RS06405	COG0735	belongs to the Fur family
LT090_RS06410	COG0716	FMN binding
LT090_RS06425	COG0596	Alpha beta hydrolase
LT090_RS06435	COG0033	Phosphoglucomutase
LT090_RS06440	COG2988	succinylglutamate desuccinylase activity
LT090_RS06445	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LT090_RS06450	COG0022	dehydrogenase e1 component
LT090_RS06480	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LT090_RS06480	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LT090_RS06485	COG0489	protein tyrosine kinase activity
LT090_RS06490	COG0717	Belongs to the dCTP deaminase family
LT090_RS06575	COG4181	ATPase activity
LT090_RS06580	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LT090_RS06585	COG1090	epimerase
LT090_RS06590	COG0628	permease
LT090_RS06595	COG2350	Protein conserved in bacteria
LT090_RS06600	COG2917	probably involved in intracellular septation
LT090_RS06615	COG1704	LemA family
LT090_RS06620	COG0501	Belongs to the peptidase M48B family
LT090_RS06630	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LT090_RS06635	COG0800	Aldolase
LT090_RS06645	COG2721	sulfolactate sulfo-lyase activity
LT090_RS06655	COG1063	alcohol dehydrogenase
LT090_RS06660	COG3119	arylsulfatase activity
LT090_RS06665	COG0738	Major facilitator superfamily
LT090_RS06670	COG3119	arylsulfatase activity
LT090_RS06675	COG3119	arylsulfatase activity
LT090_RS06690	COG3119	arylsulfatase activity
LT090_RS06720	COG3119	arylsulfatase activity
LT090_RS06740	COG3119	arylsulfatase activity
LT090_RS06740	COG3408	Glycogen debranching enzyme
LT090_RS06750	COG3119	arylsulfatase activity
LT090_RS06760	COG3119	arylsulfatase activity
LT090_RS06780	COG3119	arylsulfatase activity
LT090_RS06785	COG3119	arylsulfatase activity
LT090_RS06805	COG0738	Major facilitator superfamily
LT090_RS06840	COG0714	Associated with various cellular activities
LT090_RS06845	COG3119	arylsulfatase activity
LT090_RS06850	COG3119	arylsulfatase activity
LT090_RS06855	COG3119	arylsulfatase activity
LT090_RS06865	COG3119	arylsulfatase activity
LT090_RS06880	COG1802	Transcriptional regulator
LT090_RS06890	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LT090_RS06895	COG3273	potassium ion transport
LT090_RS06895	COG0471	metal ion transport
LT090_RS06900	COG1278	Cold shock
LT090_RS06915	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LT090_RS06920	COG0546	phosphoglycolate phosphatase activity
LT090_RS06925	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LT090_RS06945	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LT090_RS06950	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LT090_RS06955	COG0539	negative regulation of cytoplasmic translation
LT090_RS06960	COG0776	regulation of translation
LT090_RS06970	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LT090_RS06975	COG0284	orotidine-5'-phosphate decarboxylase activity
LT090_RS06980	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LT090_RS06985	COG1555	photosystem II stabilization
LT090_RS06990	COG1530	ribonuclease E activity
LT090_RS06995	COG0564	pseudouridine synthase activity
LT090_RS07005	COG0789	Transcriptional regulator
LT090_RS07020	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LT090_RS07025	COG0416	fatty acid biosynthetic process
LT090_RS07030	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LT090_RS07035	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LT090_RS07045	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LT090_RS07050	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LT090_RS07055	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LT090_RS07060	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LT090_RS07065	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LT090_RS07070	COG0470	DNA polymerase III
LT090_RS07080	COG0084	hydrolase, TatD family'
LT090_RS07085	COG0700	Nucleoside recognition
LT090_RS07095	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LT090_RS07100	COG0372	Belongs to the citrate synthase family
LT090_RS07140	COG1956	GAF domain-containing protein
LT090_RS07150	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
LT090_RS07160	COG1757	Na H antiporter
LT090_RS07165	COG0308	aminopeptidase N
LT090_RS07190	COG2902	Dehydrogenase
LT090_RS07195	COG0167	dihydroorotate dehydrogenase activity
LT090_RS07225	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LT090_RS07245	COG1309	transcriptional regulator
LT090_RS07250	COG1472	Belongs to the glycosyl hydrolase 3 family
LT090_RS07255	COG0471	metal ion transport
LT090_RS07270	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LT090_RS07275	COG2186	Transcriptional regulator
LT090_RS07280	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LT090_RS07285	COG0450	alkyl hydroperoxide reductase
LT090_RS07295	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LT090_RS07315	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
LT090_RS07330	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LT090_RS07350	COG0640	Transcriptional regulator
LT090_RS07355	COG0583	DNA-binding transcription factor activity
LT090_RS07380	COG0501	Belongs to the peptidase M48B family
LT090_RS07385	COG0545	Peptidyl-prolyl cis-trans isomerase
LT090_RS07390	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LT090_RS07395	COG0505	Belongs to the CarA family
LT090_RS07400	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LT090_RS07405	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LT090_RS07420	COG1534	Rna-binding protein
LT090_RS07425	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LT090_RS07430	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LT090_RS07435	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LT090_RS07440	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LT090_RS07445	COG0149	triose-phosphate isomerase activity
LT090_RS07450	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LT090_RS07475	COG5002	protein histidine kinase activity
LT090_RS07480	COG0745	RESPONSE REGULATOR receiver
LT090_RS07510	COG1073	alpha beta
LT090_RS07515	COG0779	Required for maturation of 30S ribosomal subunits
LT090_RS07520	COG0195	Participates in both transcription termination and antitermination
LT090_RS07525	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LT090_RS07530	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LT090_RS07535	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LT090_RS07540	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LT090_RS07555	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
LT090_RS07560	COG1185	polyribonucleotide nucleotidyltransferase activity
LT090_RS07580	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LT090_RS07590	COG0583	DNA-binding transcription factor activity
LT090_RS07595	COG1607	acyl-coa hydrolase
LT090_RS07610	COG0514	ATP-dependent DNA helicase (RecQ)
LT090_RS07615	COG0513	Belongs to the DEAD box helicase family
LT090_RS07625	COG0531	amino acid
LT090_RS07630	COG4638	Rieske (2fe-2S)
LT090_RS07645	COG1876	peptidase activity
LT090_RS07650	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LT090_RS07655	COG1393	Belongs to the ArsC family
LT090_RS07670	COG2226	methyltransferase
LT090_RS07675	COG0708	Exodeoxyribonuclease III
LT090_RS07685	COG0745	RESPONSE REGULATOR receiver
LT090_RS07690	COG2205	protein histidine kinase activity
LT090_RS07695	COG3012	SEC-C Motif Domain Protein
LT090_RS07705	COG0028	Belongs to the TPP enzyme family
LT090_RS07730	COG0857	belongs to the CobB CobQ family
LT090_RS07730	COG0280	phosphate acetyltransferase
LT090_RS07755	COG0307	riboflavin synthase, alpha
LT090_RS07765	COG3001	Fructosamine kinase
LT090_RS07770	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LT090_RS07775	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LT090_RS07780	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LT090_RS07785	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LT090_RS07790	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LT090_RS07800	COG1388	LysM domain
LT090_RS07800	COG0741	lytic transglycosylase activity
LT090_RS07805	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LT090_RS07810	COG2226	methyltransferase
LT090_RS07815	COG1070	Carbohydrate kinase
LT090_RS07820	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LT090_RS07825	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LT090_RS07830	COG0527	aspartate kinase activity
LT090_RS07835	COG1566	PFAM secretion protein HlyD family protein
LT090_RS07845	COG0386	Belongs to the glutathione peroxidase family
LT090_RS07850	COG2084	Dehydrogenase
LT090_RS07855	COG2925	Exonuclease
LT090_RS07890	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
LT090_RS07915	COG1404	Belongs to the peptidase S8 family
LT090_RS07930	COG2204	response regulator
LT090_RS07940	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LT090_RS07945	COG1074	ATP-dependent DNA helicase activity
LT090_RS07950	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LT090_RS07960	COG0745	RESPONSE REGULATOR receiver
LT090_RS07965	COG3152	Membrane
LT090_RS07970	COG2824	Alkylphosphonate utilization operon protein PhnA
LT090_RS07985	COG1643	Atp-dependent helicase
LT090_RS07995	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LT090_RS08000	COG1254	Belongs to the acylphosphatase family
LT090_RS08005	COG0604	alcohol dehydrogenase
LT090_RS08070	COG0116	Belongs to the methyltransferase superfamily
LT090_RS08070	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LT090_RS08080	COG0488	(ABC) transporter
LT090_RS08100	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LT090_RS08110	COG2197	response regulator
LT090_RS08115	COG0322	excinuclease ABC activity
LT090_RS08170	COG0537	adenosine 5'-monophosphoramidase activity
LT090_RS08185	COG3275	phosphorelay sensor kinase activity
LT090_RS08190	COG3279	Response regulator of the LytR AlgR family
LT090_RS08195	COG0205	6-phosphofructokinase activity
LT090_RS08205	COG1737	Transcriptional regulator
LT090_RS08210	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LT090_RS08215	COG0363	glucosamine-6-phosphate deaminase activity
LT090_RS08220	COG0129	dihydroxy-acid dehydratase activity
LT090_RS08230	COG0800	Aldolase
LT090_RS08240	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LT090_RS08245	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LT090_RS08260	COG2866	Carboxypeptidase
LT090_RS08265	COG1115	amino acid carrier protein
LT090_RS08275	COG3139	Protein of unknown function (DUF1315)
LT090_RS08285	COG0616	signal peptide processing
LT090_RS08295	COG0778	Nitroreductase
LT090_RS08320	COG0017	Asparaginyl-tRNA synthetase
LT090_RS08325	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LT090_RS08330	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LT090_RS08335	COG0156	8-amino-7-oxononanoate synthase activity
LT090_RS08340	COG2226	methyltransferase
LT090_RS08375	COG3082	Protein of unknown function (DUF1414)
LT090_RS08380	COG3081	Nucleoid-associated protein
LT090_RS08405	COG3008	intermembrane lipid transfer
LT090_RS08410	COG2995	paraquat-inducible protein a
LT090_RS08450	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LT090_RS08465	COG1984	allophanate hydrolase subunit 2
LT090_RS08475	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LT090_RS08480	COG4336	lyase activity
LT090_RS08495	COG0519	Catalyzes the synthesis of GMP from XMP
LT090_RS08500	COG0670	Belongs to the BI1 family
LT090_RS08510	COG2923	Belongs to the DsrF TusC family
LT090_RS08520	COG2920	part of a sulfur-relay system
LT090_RS08545	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LT090_RS08550	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LT090_RS08555	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LT090_RS08560	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LT090_RS08565	COG1674	ftsk spoiiie
LT090_RS08565	COG0531	amino acid
LT090_RS08575	COG0686	Belongs to the AlaDH PNT family
LT090_RS08580	COG0492	ferredoxin-NADP+ reductase activity
LT090_RS08590	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
LT090_RS08595	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LT090_RS08605	COG0542	response to heat
LT090_RS08615	COG1278	Cold shock
LT090_RS08635	COG1187	pseudouridine synthase activity
LT090_RS08645	COG0482	sulfurtransferase activity
LT090_RS08650	COG2915	High frequency lysogenization protein hflD homolog
LT090_RS08655	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LT090_RS08660	COG2850	peptidyl-arginine hydroxylation
LT090_RS08680	COG0247	lactate metabolic process
LT090_RS08680	COG0277	FAD linked oxidase domain protein
LT090_RS08690	COG0574	Belongs to the PEP-utilizing enzyme family
LT090_RS08690	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LT090_RS08695	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LT090_RS08700	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LT090_RS08705	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LT090_RS08720	COG2801	Transposase and inactivated derivatives
LT090_RS08740	COG0631	protein serine/threonine phosphatase activity
LT090_RS08745	COG0443	Heat shock 70 kDa protein
LT090_RS08765	COG2815	serine threonine protein kinase
LT090_RS08765	COG0515	serine threonine protein kinase
LT090_RS08770	COG2815	serine threonine protein kinase
LT090_RS08770	COG0515	serine threonine protein kinase
LT090_RS08815	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LT090_RS08840	COG0348	domain, Protein
LT090_RS08850	COG4946	Tricorn protease homolog
LT090_RS08850	COG0823	Involved in the tonB-independent uptake of proteins
LT090_RS08850	COG1506	peptidase
LT090_RS08855	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LT090_RS08865	COG0587	DNA-directed DNA polymerase activity
LT090_RS08885	COG0300	oxidoreductase activity
LT090_RS08895	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LT090_RS08905	COG0813	purine-nucleoside phosphorylase activity
LT090_RS08920	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LT090_RS08925	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LT090_RS08930	COG1435	thymidine kinase activity
LT090_RS08935	COG1785	Belongs to the alkaline phosphatase family
LT090_RS08945	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LT090_RS08950	COG0626	cystathionine gamma-synthase activity
LT090_RS08955	COG0417	DNA replication proofreading
LT090_RS08960	COG1199	ATP-dependent helicase activity
LT090_RS08965	COG0602	queuosine metabolic process
LT090_RS08970	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LT090_RS08975	COG0347	Belongs to the P(II) protein family
LT090_RS08980	COG0004	ammonium transporteR
LT090_RS08990	COG2205	protein histidine kinase activity
LT090_RS09005	COG0556	nucleotide-excision repair
LT090_RS09010	COG0534	Mate efflux family protein
LT090_RS09050	COG2040	homocysteine
LT090_RS09065	COG0625	glutathione transferase activity
LT090_RS09080	COG3278	Belongs to the heme-copper respiratory oxidase family
LT090_RS09095	COG2010	Cytochrome c
LT090_RS09105	COG2217	Heavy metal translocating P-type atpase
LT090_RS09120	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LT090_RS09130	COG0037	tRNA processing
LT090_RS09135	COG2252	PERMEase
LT090_RS09160	COG1280	lysine exporter protein (LysE YggA)
LT090_RS09180	COG0674	pyruvate-flavodoxin oxidoreductase activity
LT090_RS09180	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LT090_RS09195	COG0776	regulation of translation
LT090_RS09200	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LT090_RS09200	COG0072	phenylalanine-tRNA ligase activity
LT090_RS09205	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LT090_RS09210	COG1668	transmembrane transport
LT090_RS09215	COG4555	ABC transporter
LT090_RS09220	COG2234	aminopeptidase activity
LT090_RS09225	COG0367	asparagine synthase
LT090_RS09230	COG3038	cytochrome b561
LT090_RS09235	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
LT090_RS09245	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LT090_RS09250	COG0045	succinate-CoA ligase (ADP-forming) activity
LT090_RS09255	COG1648	precorrin-2 dehydrogenase activity
LT090_RS09255	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LT090_RS09260	COG0243	molybdopterin cofactor binding
LT090_RS09265	COG2146	nitrite reductase [NAD(P)H] activity
LT090_RS09270	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LT090_RS09270	COG2146	nitrite reductase [NAD(P)H] activity
LT090_RS09275	COG0673	inositol 2-dehydrogenase activity
LT090_RS09285	COG1119	ATPase activity
LT090_RS09290	COG1304	FMN binding
LT090_RS09300	COG3254	rhamnose metabolic process
LT090_RS09305	COG0738	Major facilitator superfamily
LT090_RS09310	COG1028	Short-chain dehydrogenase reductase Sdr
LT090_RS09325	COG2721	sulfolactate sulfo-lyase activity
LT090_RS09335	COG0515	serine threonine protein kinase
LT090_RS09335	COG2815	serine threonine protein kinase
LT090_RS09340	COG2223	nitrite transmembrane transporter activity
LT090_RS09350	COG1116	anion transmembrane transporter activity
LT090_RS09355	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LT090_RS09360	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LT090_RS09365	COG1116	anion transmembrane transporter activity
LT090_RS09365	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LT090_RS09370	COG2201	protein-glutamate methylesterase activity
LT090_RS09380	COG0508	dehydrogenase complex catalyzes the overall conversion of
LT090_RS09385	COG0567	Dehydrogenase, E1 component
LT090_RS09390	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LT090_RS09400	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LT090_RS09420	COG3437	response regulator, receiver
LT090_RS09425	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LT090_RS09430	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LT090_RS09435	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LT090_RS09445	COG0425	Belongs to the sulfur carrier protein TusA family
LT090_RS09450	COG4783	chaperone-mediated protein folding
LT090_RS09455	COG1393	Belongs to the ArsC family
LT090_RS09480	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LT090_RS09485	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LT090_RS09495	COG0121	glutamine amidotransferase
LT090_RS09500	COG1960	acyl-CoA dehydrogenase activity
LT090_RS09510	COG0612	Peptidase, M16
LT090_RS09535	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LT090_RS09620	COG0488	(ABC) transporter
LT090_RS09640	COG0513	Belongs to the DEAD box helicase family
LT090_RS09655	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LT090_RS09660	COG0730	response to heat
LT090_RS09720	COG1309	transcriptional regulator
LT090_RS09725	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LT090_RS09740	COG1304	FMN binding
LT090_RS09745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LT090_RS09755	COG1960	acyl-CoA dehydrogenase activity
LT090_RS09775	COG2271	Major facilitator Superfamily
LT090_RS09825	COG2151	metal-sulfur cluster biosynthetic enzyme
LT090_RS09835	COG2855	membrane
LT090_RS09840	COG1960	acyl-CoA dehydrogenase activity
LT090_RS09850	COG1404	Belongs to the peptidase S8 family
LT090_RS09935	COG0745	RESPONSE REGULATOR receiver
LT090_RS09940	COG2205	protein histidine kinase activity
LT090_RS09950	COG0612	Peptidase, M16
LT090_RS09955	COG1404	Belongs to the peptidase S8 family
LT090_RS09985	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LT090_RS09990	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LT090_RS09995	COG0183	Belongs to the thiolase family
LT090_RS10025	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LT090_RS10055	COG3104	oligopeptide transport
LT090_RS10060	COG2176	DNA-directed DNA polymerase activity
LT090_RS10065	COG0419	ATPase involved in DNA repair
LT090_RS10070	COG0420	3'-5' exonuclease activity
LT090_RS10080	COG1803	Methylglyoxal synthase
LT090_RS10085	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LT090_RS10090	COG3171	Protein conserved in bacteria
LT090_RS10100	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LT090_RS10120	COG3710	Transcriptional regulator
LT090_RS10125	COG1917	Cupin 2, conserved barrel domain protein
LT090_RS10125	COG2207	Transcriptional regulator
LT090_RS10130	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LT090_RS10140	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LT090_RS10145	COG0318	PFAM AMP-dependent synthetase and ligase
LT090_RS10190	COG1611	Belongs to the LOG family
LT090_RS10195	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LT090_RS10205	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
LT090_RS10220	COG0583	DNA-binding transcription factor activity
LT090_RS10250	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LT090_RS10260	COG2912	Transglutaminase-like superfamily
LT090_RS10265	COG3094	Invasion gene expression up-regulator, SirB
LT090_RS10270	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LT090_RS10280	COG0825	malonyl-CoA metabolic process
LT090_RS10285	COG0587	DNA-directed DNA polymerase activity
LT090_RS10290	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LT090_RS10295	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LT090_RS10300	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LT090_RS10305	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LT090_RS10310	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LT090_RS10325	COG0750	zinc metalloprotease
LT090_RS10330	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LT090_RS10335	COG0575	Belongs to the CDS family
LT090_RS10340	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LT090_RS10345	COG0233	cytoplasmic translational termination
LT090_RS10350	COG0528	UMP kinase activity
LT090_RS10355	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LT090_RS10360	COG0052	Belongs to the universal ribosomal protein uS2 family
LT090_RS10365	COG2171	N-acyltransferase activity
LT090_RS10370	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
LT090_RS10375	COG0024	Methionine aminopeptidase
LT090_RS10380	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LT090_RS10385	COG2835	tetraacyldisaccharide 4'-kinase activity
LT090_RS10395	COG1132	(ABC) transporter
LT090_RS10400	COG0658	competence protein
LT090_RS10400	COG2333	competence protein COMEC
LT090_RS10420	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LT090_RS10435	COG4591	ABC-type transport system involved in lipoprotein release permease component
LT090_RS10440	COG1187	pseudouridine synthase activity
LT090_RS10505	COG3148	PFAM DTW domain containing protein
LT090_RS10510	COG2983	Belongs to the UPF0260 family
LT090_RS10515	COG2951	lytic endotransglycosylase activity
LT090_RS10530	COG0318	PFAM AMP-dependent synthetase and ligase
LT090_RS10550	COG1214	PFAM Peptidase M22, glycoprotease
LT090_RS10555	COG1199	ATP-dependent helicase activity
LT090_RS10560	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LT090_RS10565	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LT090_RS10575	COG0131	Imidazoleglycerol-phosphate dehydratase
LT090_RS10575	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LT090_RS10580	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LT090_RS10585	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LT090_RS10590	COG0107	imidazoleglycerol-phosphate synthase activity
LT090_RS10595	COG0140	phosphoribosyl-ATP diphosphatase activity
LT090_RS10595	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LT090_RS10630	COG0563	adenylate kinase activity
LT090_RS10640	COG2801	Transposase and inactivated derivatives
LT090_RS10645	COG2963	transposase activity
LT090_RS10650	COG0326	Molecular chaperone. Has ATPase activity
LT090_RS10665	COG3609	addiction module antidote protein, CC2985 family
LT090_RS10670	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LT090_RS10675	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LT090_RS10680	COG1472	Belongs to the glycosyl hydrolase 3 family
LT090_RS10690	COG2723	6-phospho-beta-galactosidase activity
LT090_RS10695	COG2211	Major facilitator Superfamily
LT090_RS10705	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LT090_RS10710	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LT090_RS10735	COG0589	response to stress
LT090_RS10740	COG0589	response to stress
LT090_RS10830	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LT090_RS10840	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LT090_RS10900	COG1088	dTDP-glucose 4,6-dehydratase activity
LT090_RS10905	COG1091	dTDP-4-dehydrorhamnose reductase activity
LT090_RS10930	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LT090_RS10955	COG0438	transferase activity, transferring glycosyl groups
LT090_RS10960	COG1045	serine acetyltransferase
LT090_RS10965	COG1045	serine acetyltransferase
LT090_RS10980	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LT090_RS10995	COG1596	polysaccharide export
LT090_RS11030	COG3119	arylsulfatase activity
LT090_RS11110	COG3590	peptidase
LT090_RS11115	COG0529	Catalyzes the synthesis of activated sulfate
LT090_RS11120	COG3273	potassium ion transport
LT090_RS11120	COG0471	metal ion transport
LT090_RS11125	COG2895	sulfate adenylyltransferase (ATP) activity
LT090_RS11130	COG0175	sulfate reduction
LT090_RS11145	COG0513	Belongs to the DEAD box helicase family
LT090_RS11160	COG1007	ATP synthesis coupled electron transport
LT090_RS11185	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LT090_RS11190	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LT090_RS11195	COG1034	ATP synthesis coupled electron transport
LT090_RS11210	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LT090_RS11210	COG0649	NAD binding
LT090_RS11215	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LT090_RS11220	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LT090_RS11225	COG1067	ATP-dependent peptidase activity
LT090_RS11235	COG0495	leucyl-tRNA aminoacylation
LT090_RS11240	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
LT090_RS11250	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LT090_RS11255	COG0799	negative regulation of ribosome biogenesis
LT090_RS11260	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LT090_RS11265	COG0768	penicillin binding
LT090_RS11270	COG0772	Belongs to the SEDS family
LT090_RS11275	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LT090_RS11280	COG1686	Belongs to the peptidase S11 family
LT090_RS11290	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LT090_RS11295	COG2921	Belongs to the UPF0250 family
LT090_RS11300	COG0321	lipoyl(octanoyl) transferase activity
LT090_RS11305	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LT090_RS11330	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LT090_RS11335	COG2890	protein-(glutamine-N5) methyltransferase activity
LT090_RS11340	COG2840	Smr protein MutS2
LT090_RS11345	COG2062	phosphohistidine phosphatase, SixA
LT090_RS11370	COG1024	Enoyl-CoA hydratase
LT090_RS11370	COG1250	3-hydroxyacyl-CoA dehydrogenase
LT090_RS11375	COG0183	Belongs to the thiolase family
LT090_RS11380	COG0714	Associated with various cellular activities
LT090_RS11400	COG2304	oxidoreductase activity
LT090_RS11425	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LT090_RS11430	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LT090_RS11440	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LT090_RS11445	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LT090_RS11450	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LT090_RS11460	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LT090_RS11470	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LT090_RS11480	COG1083	cytidylyl-transferase
LT090_RS11485	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LT090_RS11495	COG2089	acid synthase
LT090_RS11500	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LT090_RS11505	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LT090_RS11520	COG0438	transferase activity, transferring glycosyl groups
LT090_RS11555	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LT090_RS11560	COG3104	oligopeptide transport
LT090_RS11570	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LT090_RS11575	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LT090_RS11580	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LT090_RS11585	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LT090_RS11590	COG2853	Lipoprotein
LT090_RS11610	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LT090_RS11615	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LT090_RS11620	COG0126	phosphoglycerate kinase activity
LT090_RS11645	COG2914	Belongs to the UPF0125 (RnfH) family
LT090_RS11650	COG2867	negative regulation of translational initiation
LT090_RS11655	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LT090_RS11660	COG0733	neurotransmitter:sodium symporter activity
LT090_RS11665	COG1666	GTP binding
LT090_RS11675	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LT090_RS11685	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LT090_RS11730	COG0542	response to heat
LT090_RS11740	COG0564	pseudouridine synthase activity
LT090_RS11745	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LT090_RS11750	COG0347	Belongs to the P(II) protein family
LT090_RS11810	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LT090_RS11815	COG1047	Peptidyl-prolyl cis-trans
LT090_RS11825	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LT090_RS11830	COG0196	riboflavin kinase activity
LT090_RS11835	COG0728	peptidoglycan biosynthetic process
LT090_RS11840	COG0268	Binds directly to 16S ribosomal RNA
LT090_RS11850	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
LT090_RS11860	COG0730	response to heat
LT090_RS11870	COG0494	nUDIX hydrolase
LT090_RS11875	COG3066	DNA modification
LT090_RS11880	COG0676	glucose-6-phosphate 1-epimerase activity
LT090_RS11930	COG4964	Belongs to the GSP D family
LT090_RS11995	COG1136	(ABC) transporter
LT090_RS12010	COG1451	nucleotide metabolic process
LT090_RS12020	COG0653	protein targeting
LT090_RS12060	COG0668	transmembrane transport
LT090_RS12085	COG1132	(ABC) transporter
LT090_RS12090	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LT090_RS12110	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LT090_RS12120	COG0513	Belongs to the DEAD box helicase family
LT090_RS12130	COG0488	(ABC) transporter
LT090_RS12135	COG0583	DNA-binding transcription factor activity
LT090_RS12140	COG2259	Doxx family
LT090_RS12145	COG0435	Glutathione S-transferase
LT090_RS12150	COG1741	Belongs to the pirin family
LT090_RS12155	COG3119	arylsulfatase activity
LT090_RS12160	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
LT090_RS12175	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LT090_RS12180	COG2271	Major facilitator Superfamily
LT090_RS12195	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LT090_RS12215	COG2186	Transcriptional regulator
LT090_RS12220	COG2186	Transcriptional regulator
LT090_RS12240	COG4771	TonB-dependent receptor
LT090_RS12250	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LT090_RS12285	COG3119	arylsulfatase activity
LT090_RS12300	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LT090_RS12300	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LT090_RS12310	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LT090_RS12315	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LT090_RS12320	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LT090_RS12325	COG0006	proline dipeptidase activity
LT090_RS12330	COG3079	Belongs to the UPF0149 family
LT090_RS12340	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LT090_RS12345	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LT090_RS12350	COG0215	cysteine-tRNA ligase activity
LT090_RS12355	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LT090_RS12360	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LT090_RS12380	COG1012	belongs to the aldehyde dehydrogenase family
LT090_RS12395	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LT090_RS12400	COG1286	toxin biosynthetic process
LT090_RS12410	COG0285	dihydrofolate synthase activity
LT090_RS12415	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LT090_RS12420	COG0101	tRNA pseudouridine synthase activity
LT090_RS12430	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LT090_RS12440	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LT090_RS12460	COG3101	peptidyl-lysine hydroxylation
LT090_RS12485	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LT090_RS12500	COG0484	heat shock protein binding
LT090_RS12505	COG0443	Heat shock 70 kDa protein
LT090_RS12510	COG3437	response regulator, receiver
LT090_RS12525	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LT090_RS12530	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LT090_RS12535	COG0497	DNA recombination
LT090_RS12540	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LT090_RS12555	COG1595	DNA-templated transcription, initiation
LT090_RS12560	COG0583	DNA-binding transcription factor activity
LT090_RS12570	COG0306	phosphate transporter
LT090_RS12575	COG1392	Phosphate transport regulator
LT090_RS12585	COG0339	signal peptide processing
LT090_RS12600	COG0488	(ABC) transporter
LT090_RS12605	COG1024	Enoyl-CoA hydratase
LT090_RS12610	COG3590	peptidase
LT090_RS12625	COG1472	Belongs to the glycosyl hydrolase 3 family
LT090_RS12630	COG1609	Transcriptional regulator
LT090_RS12645	COG3119	arylsulfatase activity
LT090_RS12650	COG3119	arylsulfatase activity
LT090_RS12660	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LT090_RS12665	COG0826	peptidase U32
LT090_RS12670	COG2974	May be involved in recombination
LT090_RS12680	COG5002	protein histidine kinase activity
LT090_RS12685	COG0745	RESPONSE REGULATOR receiver
LT090_RS12710	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LT090_RS12710	COG0301	tRNA thio-modification
LT090_RS12715	COG1722	exodeoxyribonuclease VII activity
LT090_RS12720	COG0142	geranyltranstransferase activity
LT090_RS12725	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LT090_RS12730	COG2354	Protein conserved in bacteria
LT090_RS12745	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LT090_RS12745	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LT090_RS12750	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LT090_RS12755	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LT090_RS12765	COG0443	Heat shock 70 kDa protein
LT090_RS12780	COG0822	iron-sulfur transferase activity
LT090_RS12785	COG1104	cysteine desulfurase activity
LT090_RS12790	COG1959	2 iron, 2 sulfur cluster binding
LT090_RS12800	COG0483	inositol monophosphate 1-phosphatase activity
LT090_RS12815	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LT090_RS12820	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LT090_RS12825	COG1862	Preprotein translocase
LT090_RS12830	COG0343	queuine tRNA-ribosyltransferase activity
LT090_RS12835	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LT090_RS12850	COG0788	formyltetrahydrofolate deformylase activity
LT090_RS12865	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LT090_RS12870	COG0018	arginyl-trna synthetase
LT090_RS12875	COG0084	hydrolase, TatD family'
LT090_RS12885	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LT090_RS12895	COG1648	precorrin-2 dehydrogenase activity
LT090_RS12895	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LT090_RS12910	COG0560	Phosphoserine phosphatase
LT090_RS12915	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LT090_RS12935	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LT090_RS12950	COG2991	Protein conserved in bacteria
LT090_RS12955	COG1477	protein flavinylation
LT090_RS12975	COG0023	Translation Initiation Factor
LT090_RS12980	COG2211	Major facilitator Superfamily
LT090_RS12985	COG0179	Fumarylacetoacetate (FAA) hydrolase
LT090_RS12995	COG1917	Cupin 2, conserved barrel domain protein
LT090_RS13010	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LT090_RS13015	COG4569	acetaldehyde dehydrogenase (acetylating) activity
LT090_RS13035	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
LT090_RS13050	COG0633	Ferredoxin
LT090_RS13055	COG1802	Transcriptional regulator
LT090_RS13060	COG1012	belongs to the aldehyde dehydrogenase family
LT090_RS13080	COG0179	Fumarylacetoacetate (FAA) hydrolase
LT090_RS13085	COG0730	response to heat
LT090_RS13090	COG0778	Nitroreductase
LT090_RS13135	COG0189	ligase activity
LT090_RS13150	COG0583	DNA-binding transcription factor activity
LT090_RS13160	COG4771	TonB-dependent receptor
LT090_RS13165	COG0733	neurotransmitter:sodium symporter activity
LT090_RS13180	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LT090_RS13185	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LT090_RS13190	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
LT090_RS13195	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LT090_RS13205	COG0716	FMN binding
LT090_RS13210	COG0513	Belongs to the DEAD box helicase family
LT090_RS13215	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LT090_RS13235	COG3022	response to hydroperoxide
LT090_RS13240	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LT090_RS13250	COG1272	protein, Hemolysin III
LT090_RS13255	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LT090_RS13260	COG0583	DNA-binding transcription factor activity
LT090_RS13275	COG1131	(ABC) transporter
LT090_RS13280	COG1444	tRNA N-acetyltransferase activity
LT090_RS13285	COG4459	periplasmic nitrate reductase
LT090_RS13290	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LT090_RS13300	COG0243	molybdopterin cofactor binding
LT090_RS13305	COG3043	anaerobic respiration
LT090_RS13310	COG3005	denitrification pathway
LT090_RS13335	COG0303	'Molybdopterin
LT090_RS13345	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LT090_RS13350	COG0746	molybdenum cofactor guanylyltransferase activity
LT090_RS13355	COG0521	Mo-molybdopterin cofactor biosynthetic process
LT090_RS13370	COG0314	molybdopterin synthase activity
LT090_RS13385	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LT090_RS13390	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LT090_RS13395	COG3130	regulation of translation
LT090_RS13400	COG3530	Putative quorum-sensing-regulated virulence factor
LT090_RS13405	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LT090_RS13410	COG3118	belongs to the thioredoxin family
LT090_RS13430	COG0167	dihydroorotate dehydrogenase activity
LT090_RS13450	COG1595	DNA-templated transcription, initiation
LT090_RS13460	COG4251	negative regulation of phosphorylation
LT090_RS13460	COG2203	Gaf domain
LT090_RS13460	COG3706	GGDEF domain
LT090_RS13460	COG5001	Diguanylate cyclase
LT090_RS13490	COG3313	Fe-S protein
LT090_RS13495	COG0659	secondary active sulfate transmembrane transporter activity
LT090_RS13500	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
LT090_RS13530	COG4133	protoheme IX ABC transporter activity
LT090_RS13535	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LT090_RS13540	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LT090_RS13545	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LT090_RS13550	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LT090_RS13560	COG0848	biopolymer transport protein
LT090_RS13565	COG0745	RESPONSE REGULATOR receiver
LT090_RS13575	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LT090_RS13590	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LT090_RS13605	COG4221	oxidoreductase activity
LT090_RS13615	COG0415	Belongs to the DNA photolyase family
LT090_RS13625	COG3806	Anti-sigma factor
LT090_RS13630	COG1595	DNA-templated transcription, initiation
LT090_RS13640	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
LT090_RS13680	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
LT090_RS13750	COG4974	Belongs to the 'phage' integrase family
LT090_RS13775	COG0795	lipopolysaccharide-transporting ATPase activity
LT090_RS13780	COG0795	lipopolysaccharide-transporting ATPase activity
LT090_RS13785	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LT090_RS13790	COG2927	DNA polymerase III (CHI subunit)
LT090_RS13795	COG0525	valine-tRNA ligase activity
LT090_RS13805	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
LT090_RS13855	COG3150	esterase
LT090_RS13865	COG3151	Protein conserved in bacteria
LT090_RS13870	COG0494	nUDIX hydrolase
LT090_RS13875	COG1538	Outer membrane efflux protein
LT090_RS13880	COG1438	arginine binding
LT090_RS13885	COG0039	L-malate dehydrogenase activity
LT090_RS13900	COG0142	geranyltranstransferase activity
LT090_RS13905	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LT090_RS13910	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LT090_RS13915	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LT090_RS13935	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LT090_RS13945	COG2203	Gaf domain
LT090_RS13945	COG3706	GGDEF domain
LT090_RS13945	COG4251	negative regulation of phosphorylation
LT090_RS13945	COG5001	Diguanylate cyclase
LT090_RS13985	COG1024	Enoyl-CoA hydratase
LT090_RS14015	COG0745	RESPONSE REGULATOR receiver
LT090_RS14025	COG1469	GTP cyclohydrolase I activity
LT090_RS14030	COG0067	glutamate synthase
LT090_RS14030	COG0070	glutamate synthase
LT090_RS14030	COG0069	glutamate synthase activity
LT090_RS14035	COG0493	'glutamate synthase
LT090_RS14045	COG1215	transferase activity, transferring glycosyl groups
LT090_RS14050	COG0366	Alpha amylase catalytic
LT090_RS14060	COG5002	protein histidine kinase activity
LT090_RS14065	COG0745	RESPONSE REGULATOR receiver
LT090_RS14075	COG1671	Belongs to the UPF0178 family
LT090_RS14085	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LT090_RS14090	COG0243	molybdopterin cofactor binding
LT090_RS14095	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LT090_RS14120	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LT090_RS14125	COG4942	peptidase
LT090_RS14140	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LT090_RS14145	COG4569	acetaldehyde dehydrogenase (acetylating) activity
LT090_RS14155	COG0583	DNA-binding transcription factor activity
LT090_RS14175	COG1917	Cupin 2, conserved barrel domain protein
LT090_RS14185	COG3844	kynureninase activity
LT090_RS14190	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LT090_RS14195	COG3483	tryptophan 2,3-dioxygenase activity
LT090_RS14200	COG0564	pseudouridine synthase activity
LT090_RS14210	COG4946	Tricorn protease homolog
LT090_RS14210	COG1506	peptidase
LT090_RS14210	COG0823	Involved in the tonB-independent uptake of proteins
LT090_RS14225	COG0163	prenyltransferase activity
LT090_RS14230	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LT090_RS14240	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
LT090_RS14320	COG0183	Belongs to the thiolase family
LT090_RS14325	COG1250	3-hydroxyacyl-CoA dehydrogenase
LT090_RS14325	COG1024	Enoyl-CoA hydratase
LT090_RS14330	COG1227	inorganic diphosphatase activity
LT090_RS14360	COG1842	Phage shock protein A
LT090_RS14370	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LT090_RS14375	COG0735	belongs to the Fur family
LT090_RS14385	COG0305	Participates in initiation and elongation during chromosome replication
LT090_RS14405	COG2832	Protein of unknown function (DUF454)
LT090_RS14410	COG4807	Protein conserved in bacteria
LT090_RS14420	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LT090_RS14425	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LT090_RS14435	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LT090_RS14440	COG0254	rRNA binding
LT090_RS14445	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LT090_RS14460	COG3279	Response regulator of the LytR AlgR family
LT090_RS14465	COG3275	phosphorelay sensor kinase activity
LT090_RS14500	COG0583	DNA-binding transcription factor activity
LT090_RS14525	COG0456	acetyltransferase
LT090_RS14545	COG3119	arylsulfatase activity
LT090_RS14550	COG3119	arylsulfatase activity
LT090_RS14555	COG3250	beta-galactosidase activity
LT090_RS14580	COG3119	arylsulfatase activity
LT090_RS14595	COG3119	arylsulfatase activity
LT090_RS14605	COG3119	arylsulfatase activity
LT090_RS14610	COG3119	arylsulfatase activity
LT090_RS14615	COG3734	2-keto-3-deoxy-galactonokinase
LT090_RS14640	COG3734	2-keto-3-deoxy-galactonokinase
LT090_RS14645	COG1028	Short-chain dehydrogenase reductase Sdr
LT090_RS14650	COG2186	Transcriptional regulator
LT090_RS14680	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
LT090_RS14680	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
LT090_RS14690	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LT090_RS14705	COG0545	Peptidyl-prolyl cis-trans isomerase
LT090_RS14710	COG2900	Belongs to the SlyX family
LT090_RS14715	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LT090_RS14720	COG0488	(ABC) transporter
LT090_RS14725	COG2824	Alkylphosphonate utilization operon protein PhnA
LT090_RS14735	COG0429	hydrolase of the alpha beta-hydrolase fold
LT090_RS14740	COG3089	Belongs to the UPF0270 family
LT090_RS14750	COG1218	3'(2'),5'-bisphosphate nucleotidase
LT090_RS14755	COG0494	nUDIX hydrolase
LT090_RS14760	COG1011	Hydrolase
LT090_RS14770	COG2195	Cleaves the N-terminal amino acid of tripeptides
LT090_RS14775	COG1309	transcriptional regulator
LT090_RS14780	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LT090_RS14785	COG2003	Belongs to the UPF0758 family
LT090_RS14790	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LT090_RS14795	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LT090_RS14805	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LT090_RS14810	COG0604	alcohol dehydrogenase
LT090_RS14820	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LT090_RS14830	COG3642	lipopolysaccharide core region biosynthetic process
LT090_RS14835	COG0859	PFAM glycosyl transferase family 9
LT090_RS14865	COG3813	Protein conserved in bacteria
LT090_RS14870	COG1519	Transferase
LT090_RS14880	COG1063	alcohol dehydrogenase
LT090_RS14885	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LT090_RS14890	COG0705	Rhomboid family
LT090_RS14900	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LT090_RS14915	COG2962	Rard protein
LT090_RS14925	COG2271	Major facilitator Superfamily
LT090_RS14935	COG0210	DNA helicase
LT090_RS14950	COG1011	Hydrolase
LT090_RS14960	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LT090_RS14965	COG0019	diaminopimelate decarboxylase activity
LT090_RS14970	COG1965	Belongs to the frataxin family
LT090_RS14975	COG0181	hydroxymethylbilane synthase activity
LT090_RS14980	COG1587	Uroporphyrinogen-III synthase
LT090_RS14985	COG2959	enzyme of heme biosynthesis
LT090_RS15035	COG2937	Belongs to the GPAT DAPAT family
LT090_RS15055	COG1396	sequence-specific DNA binding
LT090_RS15060	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LT090_RS15070	COG0137	argininosuccinate synthase activity
LT090_RS15075	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LT090_RS15080	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LT090_RS15085	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LT090_RS15105	COG0460	homoserine dehydrogenase
LT090_RS15105	COG0527	aspartate kinase activity
LT090_RS15110	COG0626	cystathionine gamma-synthase activity
LT090_RS15115	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
LT090_RS15130	COG0583	DNA-binding transcription factor activity
LT090_RS15135	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LT090_RS15145	COG0330	HflC and HflK could
LT090_RS15150	COG0330	HflC and HflK could
LT090_RS15155	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LT090_RS15160	COG1923	regulation of RNA biosynthetic process
LT090_RS15165	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LT090_RS15180	COG0802	atpase or kinase
LT090_RS15185	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LT090_RS15185	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LT090_RS15190	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LT090_RS15195	COG3678	ATP-independent chaperone mediated protein folding
LT090_RS15200	COG0745	RESPONSE REGULATOR receiver
LT090_RS15205	COG2205	protein histidine kinase activity
LT090_RS15210	COG2267	carboxylic ester hydrolase activity
LT090_RS15220	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LT090_RS15225	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LT090_RS15230	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LT090_RS15235	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LT090_RS15240	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LT090_RS15245	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LT090_RS15250	COG4942	peptidase
LT090_RS15260	COG2861	carbohydrate metabolic process
LT090_RS15270	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LT090_RS15295	COG0297	glycogen (starch) synthase activity
LT090_RS15300	COG0438	transferase activity, transferring glycosyl groups
LT090_RS15325	COG0297	glycogen (starch) synthase activity
LT090_RS15325	COG0438	transferase activity, transferring glycosyl groups
LT090_RS15330	COG0726	polysaccharide deacetylase
LT090_RS15370	COG1045	serine acetyltransferase
LT090_RS15385	COG0726	polysaccharide deacetylase
LT090_RS15390	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LT090_RS15395	COG1596	polysaccharide export
LT090_RS15405	COG0489	protein tyrosine kinase activity
LT090_RS15415	COG3409	Peptidoglycan-binding domain 1 protein
LT090_RS15415	COG3267	Type II secretory pathway component ExeA
LT090_RS15420	COG2204	response regulator
LT090_RS15425	COG3290	protein histidine kinase activity
LT090_RS15445	COG1085	galactose-1-phosphate uridylyltransferase
LT090_RS15450	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LT090_RS15455	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LT090_RS15460	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LT090_RS15465	COG0604	alcohol dehydrogenase
LT090_RS15465	COG1028	Short-chain dehydrogenase reductase Sdr
LT090_RS15465	COG3321	synthase
LT090_RS15470	COG1028	Short-chain dehydrogenase reductase Sdr
LT090_RS15480	COG0457	Tetratricopeptide repeat
LT090_RS15485	COG0583	DNA-binding transcription factor activity
LT090_RS15490	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LT090_RS15510	COG5520	Belongs to the glycosyl hydrolase 30 family
LT090_RS15520	COG2755	lipolytic protein G-D-S-L family
LT090_RS15520	COG0657	acetylesterase activity
LT090_RS15555	COG3119	arylsulfatase activity
LT090_RS15565	COG3119	arylsulfatase activity
LT090_RS15570	COG1472	Belongs to the glycosyl hydrolase 3 family
LT090_RS15615	COG3119	arylsulfatase activity
LT090_RS15620	COG1472	Belongs to the glycosyl hydrolase 3 family
LT090_RS15625	COG3119	arylsulfatase activity
LT090_RS15630	COG1609	Transcriptional regulator
LT090_RS15635	COG3119	arylsulfatase activity
LT090_RS15645	COG2755	lipolytic protein G-D-S-L family
LT090_RS15660	COG3119	arylsulfatase activity
LT090_RS15690	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LT090_RS15695	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LT090_RS15720	COG1349	DNA-binding transcription factor activity
LT090_RS15725	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LT090_RS15730	COG1960	acyl-CoA dehydrogenase activity
LT090_RS15735	COG1960	acyl-CoA dehydrogenase activity
LT090_RS15755	COG1454	alcohol dehydrogenase
LT090_RS15760	COG2072	flavoprotein involved in K transport
LT090_RS15770	COG4771	TonB-dependent receptor
LT090_RS15775	COG2211	Major facilitator Superfamily
LT090_RS15780	COG2272	Belongs to the type-B carboxylesterase lipase family
LT090_RS15790	COG0446	pyridine nucleotide-disulphide oxidoreductase
LT090_RS15790	COG1902	pentaerythritol trinitrate reductase activity
LT090_RS15810	COG0183	Belongs to the thiolase family
LT090_RS15815	COG1028	Short-chain dehydrogenase reductase Sdr
LT090_RS15825	COG0318	PFAM AMP-dependent synthetase and ligase
LT090_RS15840	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LT090_RS15850	COG0640	Transcriptional regulator
LT090_RS15855	COG0678	peroxiredoxin activity
LT090_RS15855	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LT090_RS15860	COG4628	conserved protein (DUF2132)
LT090_RS15885	COG1960	acyl-CoA dehydrogenase activity
LT090_RS15920	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LT090_RS15935	COG1476	TRANSCRIPTIONal
LT090_RS15960	COG2301	Belongs to the HpcH HpaI aldolase family
LT090_RS15965	COG2030	dehydratase
LT090_RS15975	COG0457	Tetratricopeptide repeat
LT090_RS15980	COG4771	TonB-dependent receptor
LT090_RS15985	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LT090_RS15995	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LT090_RS16015	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LT090_RS16025	COG4946	Tricorn protease homolog
LT090_RS16025	COG1506	peptidase
LT090_RS16025	COG0823	Involved in the tonB-independent uptake of proteins
LT090_RS16050	COG0346	lactoylglutathione lyase activity
LT090_RS16065	COG0667	Aldo Keto reductase
LT090_RS16070	COG0069	glutamate synthase activity
LT090_RS16080	COG2081	HI0933 family
LT090_RS16085	COG1528	Iron-storage protein
LT090_RS16090	COG0678	peroxiredoxin activity
LT090_RS16105	COG0742	ribosomal rna small subunit methyltransferase
LT090_RS16125	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LT090_RS16135	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LT090_RS16140	COG0581	inorganic phosphate transmembrane transporter activity
LT090_RS16145	COG0573	inorganic phosphate transmembrane transporter activity
LT090_RS16155	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LT090_RS16155	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LT090_RS16160	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LT090_RS16170	COG0574	Belongs to the PEP-utilizing enzyme family
LT090_RS16170	COG3848	Pyruvate phosphate dikinase
LT090_RS16175	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
LT090_RS16180	COG1213	nucleotidyl transferase
LT090_RS16185	COG3475	LICD family
LT090_RS16195	COG2199	diguanylate cyclase activity
LT090_RS16220	COG3078	GTPase activator activity
LT090_RS16230	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LT090_RS16240	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LT090_RS16240	COG0517	IMP dehydrogenase activity
LT090_RS16250	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LT090_RS16260	COG2205	protein histidine kinase activity
LT090_RS16270	COG1505	serine-type exopeptidase activity
LT090_RS16290	COG3119	arylsulfatase activity
LT090_RS16300	COG2814	Major facilitator Superfamily
LT090_RS16320	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
LT090_RS16335	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LT090_RS16370	COG0662	Cupin 2, conserved barrel domain protein
LT090_RS16390	COG5507	3-demethylubiquinone-9 3-methyltransferase
LT090_RS16395	COG1573	uracil-dna glycosylase
LT090_RS16405	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LT090_RS16425	COG3738	Protein conserved in bacteria
LT090_RS16450	COG0454	-acetyltransferase
LT090_RS16515	COG3093	addiction module antidote protein HigA
LT090_RS16545	COG3093	addiction module antidote protein HigA
LT090_RS16625	COG3119	arylsulfatase activity
LT090_RS16665	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LT090_RS16670	COG3615	Tellurite resistance protein tehB
LT090_RS16680	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LT090_RS16685	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LT090_RS16690	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LT090_RS16695	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LT090_RS16700	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LT090_RS16720	COG1475	DNA binding
LT090_RS16725	COG1192	Involved in chromosome partitioning
LT090_RS16730	COG0357	Ribosomal RNA small subunit methyltransferase G
LT090_RS16735	COG0445	tRNA wobble uridine modification
LT090_RS16740	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LT090_RS16745	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LT090_RS16755	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LT090_RS16760	COG0594	ribonuclease P activity
LT090_RS16765	COG0230	Belongs to the bacterial ribosomal protein bL34 family