THERJR_RS00010	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS00010	SM00760	Bacterial dnaA protein helix-turn-helix domain
THERJR_RS00015	SM00480	DNA polymerase III beta subunit
THERJR_RS00040	SM00387	Histidine kinase-like ATPases
THERJR_RS00040	SM00433	TopoisomeraseII
THERJR_RS00045	SM00434	DNA Topoisomerase IV
THERJR_RS00105	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS00105	SM00876	Biotin and Thiamin Synthesis associated domain
THERJR_RS00110	SM00345	helix_turn_helix gluconate operon transcriptional repressor
THERJR_RS00115	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS00125	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS00125	SM00245	tail specific protease
THERJR_RS00140	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS00160	SM01018	B12 binding domain
THERJR_RS00175	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS00195	SM00877	THERJR_RS00195
THERJR_RS00220	SM00877	THERJR_RS00220
THERJR_RS00235	SM00877	THERJR_RS00235
THERJR_RS00250	SM00877	THERJR_RS00250
THERJR_RS00260	SM00877	THERJR_RS00260
THERJR_RS00265	SM00877	THERJR_RS00265
THERJR_RS00290	SM00342	helix_turn_helix, arabinose operon control protein
THERJR_RS00295	SM01018	B12 binding domain
THERJR_RS00305	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS00310	SM00327	von Willebrand factor (vWF) type A domain
THERJR_RS00325	SM01018	B12 binding domain
THERJR_RS00360	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS00365	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
THERJR_RS00380	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS00390	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THERJR_RS00390	SM00493	THERJR_RS00390
THERJR_RS00400	SM00830	Chorismate mutase type II
THERJR_RS00520	SM00966	SpoVT / AbrB like domain 
THERJR_RS00560	SM01208	THERJR_RS00560
THERJR_RS00565	SM00650	Ribosomal RNA adenine dimethylases
THERJR_RS00605	SM00260	Two component signalling adaptor domain
THERJR_RS00610	SM00073	Histidine Phosphotransfer domain
THERJR_RS00610	SM00260	Two component signalling adaptor domain
THERJR_RS00610	SM00387	Histidine kinase-like ATPases
THERJR_RS00610	SM01231	THERJR_RS00610
THERJR_RS00615	SM00448	cheY-homologous receiver domain
THERJR_RS00620	SM00448	cheY-homologous receiver domain
THERJR_RS00645	SM00028	Tetratricopeptide repeats
THERJR_RS00700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
THERJR_RS00700	SM00895	THERJR_RS00700
THERJR_RS00720	SM01400	THERJR_RS00720
THERJR_RS00755	SM00834	Putative regulatory protein
THERJR_RS00760	SM01018	B12 binding domain
THERJR_RS00790	SM00363	S4 RNA-binding domain
THERJR_RS00840	SM00257	Lysin motif
THERJR_RS00840	SM01208	THERJR_RS00840
THERJR_RS00855	SM00749	bacterial OsmY and nodulation domain
THERJR_RS00865	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS00865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS00875	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS00900	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS00905	SM00267	diguanylate cyclase
THERJR_RS00915	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS00940	SM00487	DEAD-like helicases superfamily
THERJR_RS00940	SM00490	helicase superfamily c-terminal domain
THERJR_RS00940	SM00982	THERJR_RS00940
THERJR_RS00940	SM01058	CarD-like/TRCF domain
THERJR_RS00950	SM00966	SpoVT / AbrB like domain 
THERJR_RS00965	SM00411	bacterial (prokaryotic) histone like domain
THERJR_RS00975	SM00363	S4 RNA-binding domain
THERJR_RS01005	SM00316	Ribosomal protein S1-like RNA-binding domain
THERJR_RS01060	SM00331	Sigma factor PP2C-like phosphatases
THERJR_RS01070	SM00977	TilS substrate C-terminal domain
THERJR_RS01075	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS01080	SM00562	THERJR_RS01080
THERJR_RS01100	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS01110	SM00905	Dihydroneopterin aldolase
THERJR_RS01165	SM00327	von Willebrand factor (vWF) type A domain
THERJR_RS01170	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS01260	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS01265	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS01285	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS01285	SM01086	C-terminal, D2-small domain, of ClpB protein
THERJR_RS01300	SM00331	Sigma factor PP2C-like phosphatases
THERJR_RS01305	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS01320	SM01058	CarD-like/TRCF domain
THERJR_RS01325	SM00670	Large family of predicted nucleotide-binding domains
THERJR_RS01420	SM00840	THERJR_RS01420
THERJR_RS01425	SM00535	Ribonuclease III family
THERJR_RS01435	SM00967	RNA 2'-O ribose methyltransferase substrate binding
THERJR_RS01480	SM00347	helix_turn_helix multiple antibiotic resistance protein
THERJR_RS01505	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
THERJR_RS01505	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
THERJR_RS01510	SM00649	Ribosomal protein L11/L12
THERJR_RS01540	SM00663	RNA polymerase I subunit A N-terminus
THERJR_RS01560	SM00838	Elongation factor G C-terminus
THERJR_RS01560	SM00889	Elongation factor G, domain IV
THERJR_RS01570	SM01403	THERJR_RS01570
THERJR_RS01590	SM01382	THERJR_RS01590
THERJR_RS01590	SM01383	THERJR_RS01590
THERJR_RS01605	SM00322	K homology RNA-binding domain
THERJR_RS01625	SM01374	THERJR_RS01625
THERJR_RS01630	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
THERJR_RS01690	SM00316	Ribosomal protein S1-like RNA-binding domain
THERJR_RS01710	SM00363	S4 RNA-binding domain
THERJR_RS01710	SM01390	THERJR_RS01710
THERJR_RS01715	SM00662	RNA polymerases D
THERJR_RS01725	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS01730	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS01765	SM00646	THERJR_RS01765
THERJR_RS01775	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS01810	SM00859	Semialdehyde dehydrogenase, NAD binding domain
THERJR_RS01840	SM00851	MGS-like domain
THERJR_RS01840	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
THERJR_RS01895	SM00917	LeuA allosteric (dimerisation) domain
THERJR_RS01910	SM01329	THERJR_RS01910
THERJR_RS01915	SM00917	LeuA allosteric (dimerisation) domain
THERJR_RS01990	SM00858	THERJR_RS01990
THERJR_RS02125	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS02130	SM00267	diguanylate cyclase
THERJR_RS02155	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS02165	SM00062	Bacterial periplasmic substrate-binding proteins
THERJR_RS02165	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
THERJR_RS02180	SM01068	Putative carbohydrate binding domain
THERJR_RS02190	SM00267	diguanylate cyclase
THERJR_RS02275	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
THERJR_RS02300	SM00347	helix_turn_helix multiple antibiotic resistance protein
THERJR_RS02310	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
THERJR_RS02320	SM00450	Rhodanese Homology Domain
THERJR_RS02340	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
THERJR_RS02410	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
THERJR_RS02430	SM00014	Acid phosphatase homologues
THERJR_RS02460	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS02545	SM00450	Rhodanese Homology Domain
THERJR_RS02580	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS02655	SM00347	helix_turn_helix multiple antibiotic resistance protein
THERJR_RS02710	SM00966	SpoVT / AbrB like domain 
THERJR_RS02735	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THERJR_RS02735	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS02770	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS02775	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS02810	SM00422	helix_turn_helix, mercury resistance
THERJR_RS02820	SM00421	helix_turn_helix, Lux Regulon
THERJR_RS02835	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS02875	SM00421	helix_turn_helix, Lux Regulon
THERJR_RS02970	SM00487	DEAD-like helicases superfamily
THERJR_RS02970	SM00490	helicase superfamily c-terminal domain
THERJR_RS03015	SM00062	Bacterial periplasmic substrate-binding proteins
THERJR_RS03025	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS03055	SM00988	UreE urease accessory protein, N-terminal domain
THERJR_RS03085	SM00387	Histidine kinase-like ATPases
THERJR_RS03090	SM00342	helix_turn_helix, arabinose operon control protein
THERJR_RS03090	SM00448	cheY-homologous receiver domain
THERJR_RS03095	SM00877	THERJR_RS03095
THERJR_RS03100	SM00877	THERJR_RS03100
THERJR_RS03130	SM00877	THERJR_RS03130
THERJR_RS03135	SM00877	THERJR_RS03135
THERJR_RS03145	SM00842	Cell division protein FtsA
THERJR_RS03175	SM00877	THERJR_RS03175
THERJR_RS03195	SM00419	helix_turn_helix, cAMP Regulatory protein
THERJR_RS03205	SM00481	DNA polymerase alpha chain like domain
THERJR_RS03225	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS03235	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS03240	SM00257	Lysin motif
THERJR_RS03245	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS03265	SM00091	PAS domain
THERJR_RS03265	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS03270	SM00387	Histidine kinase-like ATPases
THERJR_RS03275	SM00448	cheY-homologous receiver domain
THERJR_RS03275	SM00850	LytTr DNA-binding domain
THERJR_RS03280	SM00260	Two component signalling adaptor domain
THERJR_RS03295	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS03300	SM01005	Alanine racemase, C-terminal domain
THERJR_RS03305	SM01245	THERJR_RS03305
THERJR_RS03310	SM00448	cheY-homologous receiver domain
THERJR_RS03310	SM01012	THERJR_RS03310
THERJR_RS03325	SM00448	cheY-homologous receiver domain
THERJR_RS03325	SM01012	THERJR_RS03325
THERJR_RS03345	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS03360	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS03450	SM00938	Nitrogen regulatory protein P-II
THERJR_RS03455	SM00938	Nitrogen regulatory protein P-II
THERJR_RS03480	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS03505	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS03520	SM00938	Nitrogen regulatory protein P-II
THERJR_RS03535	SM00938	Nitrogen regulatory protein P-II
THERJR_RS03540	SM00938	Nitrogen regulatory protein P-II
THERJR_RS03545	SM00448	cheY-homologous receiver domain
THERJR_RS03545	SM01012	THERJR_RS03545
THERJR_RS03550	SM01230	THERJR_RS03550
THERJR_RS03560	SM01230	THERJR_RS03560
THERJR_RS03625	SM00448	cheY-homologous receiver domain
THERJR_RS03680	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS03680	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS03715	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THERJR_RS03720	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS03720	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THERJR_RS03725	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS03725	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THERJR_RS03740	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS03780	SM00670	Large family of predicted nucleotide-binding domains
THERJR_RS03790	SM00852	Probable molybdopterin binding domain
THERJR_RS03795	SM00852	Probable molybdopterin binding domain
THERJR_RS03800	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS03815	SM00852	Probable molybdopterin binding domain
THERJR_RS03820	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS03850	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS03875	SM00883	Chaperonin 10 Kd subunit
THERJR_RS03890	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS03910	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS03955	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS03985	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04000	SM00387	Histidine kinase-like ATPases
THERJR_RS04000	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS04005	SM00448	cheY-homologous receiver domain
THERJR_RS04010	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04015	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04115	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04140	SM01211	THERJR_RS04140
THERJR_RS04150	SM01001	AIR carboxylase
THERJR_RS04155	SM00998	Adenylosuccinate lyase C-terminus
THERJR_RS04180	SM00798	AICARFT/IMPCHase bienzyme
THERJR_RS04180	SM00851	MGS-like domain
THERJR_RS04185	SM01209	THERJR_RS04185
THERJR_RS04185	SM01210	THERJR_RS04185
THERJR_RS04195	SM00387	Histidine kinase-like ATPases
THERJR_RS04245	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS04245	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS04280	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THERJR_RS04280	SM00292	breast cancer carboxy-terminal domain
THERJR_RS04280	SM00532	Ligase N family
THERJR_RS04310	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
THERJR_RS04335	SM00062	Bacterial periplasmic substrate-binding proteins
THERJR_RS04335	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
THERJR_RS04390	SM00845	GatB domain
THERJR_RS04405	SM01329	THERJR_RS04405
THERJR_RS04425	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04440	SM01066	Carbohydrate binding domain
THERJR_RS04505	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS04510	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04530	SM00487	DEAD-like helicases superfamily
THERJR_RS04535	SM00670	Large family of predicted nucleotide-binding domains
THERJR_RS04565	SM00155	Phospholipase D. Active site motifs.
THERJR_RS04590	SM00670	Large family of predicted nucleotide-binding domains
THERJR_RS04605	SM00347	helix_turn_helix multiple antibiotic resistance protein
THERJR_RS04630	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04645	SM00271	DnaJ molecular chaperone homology domain
THERJR_RS04655	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04655	SM01086	C-terminal, D2-small domain, of ClpB protein
THERJR_RS04670	SM00450	Rhodanese Homology Domain
THERJR_RS04745	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS04745	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THERJR_RS04760	SM00357	Cold shock protein domain
THERJR_RS04785	SM00947	Carbonic anhydrase
THERJR_RS04810	SM00028	Tetratricopeptide repeats
THERJR_RS04815	SM00028	Tetratricopeptide repeats
THERJR_RS04820	SM00028	Tetratricopeptide repeats
THERJR_RS04840	SM00028	Tetratricopeptide repeats
THERJR_RS04855	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
THERJR_RS04855	SM00475	5'-3' exonuclease
THERJR_RS04855	SM00482	DNA polymerase A domain
THERJR_RS04860	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
THERJR_RS04860	SM01232	THERJR_RS04860
THERJR_RS04895	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04900	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04960	SM01018	B12 binding domain
THERJR_RS04965	SM01018	B12 binding domain
THERJR_RS04970	SM00091	PAS domain
THERJR_RS04970	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS04975	SM01018	B12 binding domain
THERJR_RS04985	SM01018	B12 binding domain
THERJR_RS05050	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS05055	SM00062	Bacterial periplasmic substrate-binding proteins
THERJR_RS05095	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS05110	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THERJR_RS05115	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THERJR_RS05135	SM00028	Tetratricopeptide repeats
THERJR_RS05150	SM00135	Low-density lipoprotein-receptor YWTD domain
THERJR_RS05155	SM00060	Fibronectin type 3 domain
THERJR_RS05160	SM00060	Fibronectin type 3 domain
THERJR_RS05205	SM00914	THERJR_RS05205
THERJR_RS05215	SM00481	DNA polymerase alpha chain like domain
THERJR_RS05230	SM00646	THERJR_RS05230
THERJR_RS05290	SM00028	Tetratricopeptide repeats
THERJR_RS05390	SM00487	DEAD-like helicases superfamily
THERJR_RS05390	SM00490	helicase superfamily c-terminal domain
THERJR_RS05395	SM00487	DEAD-like helicases superfamily
THERJR_RS05395	SM00490	helicase superfamily c-terminal domain
THERJR_RS05420	SM00487	DEAD-like helicases superfamily
THERJR_RS05420	SM00490	helicase superfamily c-terminal domain
THERJR_RS05450	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS05465	SM00028	Tetratricopeptide repeats
THERJR_RS05475	SM00481	DNA polymerase alpha chain like domain
THERJR_RS05495	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS05515	SM00028	Tetratricopeptide repeats
THERJR_RS05545	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS05550	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS05620	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS05685	SM00028	Tetratricopeptide repeats
THERJR_RS05740	SM00060	Fibronectin type 3 domain
THERJR_RS05775	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS05780	SM01004	Delta-aminolevulinic acid dehydratase
THERJR_RS05785	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS05790	SM00344	helix_turn_helix ASNC type
THERJR_RS05810	SM00138	Methyltransferase, chemotaxis proteins 
THERJR_RS05815	SM00842	Cell division protein FtsA
THERJR_RS05825	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS05940	SM00257	Lysin motif
THERJR_RS05975	SM00930	THERJR_RS05975
THERJR_RS06010	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THERJR_RS06015	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06060	SM00062	Bacterial periplasmic substrate-binding proteins
THERJR_RS06060	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
THERJR_RS06070	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06080	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS06080	SM00387	Histidine kinase-like ATPases
THERJR_RS06080	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS06085	SM00448	cheY-homologous receiver domain
THERJR_RS06085	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS06110	SM01323	THERJR_RS06110
THERJR_RS06135	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS06135	SM00954	Region found in RelA / SpoT proteins
THERJR_RS06145	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS06165	SM00481	DNA polymerase alpha chain like domain
THERJR_RS06185	SM00257	Lysin motif
THERJR_RS06200	SM00448	cheY-homologous receiver domain
THERJR_RS06200	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS06205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS06205	SM00387	Histidine kinase-like ATPases
THERJR_RS06205	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS06270	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06275	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06315	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06390	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06420	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06470	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06480	SM00322	K homology RNA-binding domain
THERJR_RS06480	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS06555	SM00487	DEAD-like helicases superfamily
THERJR_RS06580	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06620	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06655	SM00855	Phosphoglycerate mutase family
THERJR_RS06685	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS06685	SM01240	THERJR_RS06685
THERJR_RS06695	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS06705	SM00899	THERJR_RS06705
THERJR_RS06790	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THERJR_RS06790	SM00267	diguanylate cyclase
THERJR_RS06820	SM00448	cheY-homologous receiver domain
THERJR_RS06820	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS06825	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS06825	SM00387	Histidine kinase-like ATPases
THERJR_RS06825	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS06910	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS06935	SM00479	THERJR_RS06935
THERJR_RS06935	SM00481	DNA polymerase alpha chain like domain
THERJR_RS06950	SM00316	Ribosomal protein S1-like RNA-binding domain
THERJR_RS06950	SM00322	K homology RNA-binding domain
THERJR_RS06985	SM00904	Riboflavin kinase
THERJR_RS07000	SM01387	THERJR_RS07000
THERJR_RS07005	SM00316	Ribosomal protein S1-like RNA-binding domain
THERJR_RS07005	SM00322	K homology RNA-binding domain
THERJR_RS07010	SM00518	AP endonuclease family 2
THERJR_RS07025	SM00636	THERJR_RS07025
THERJR_RS07045	SM00936	Penicillin-binding protein 5, C-terminal domain 
THERJR_RS07085	SM00859	Semialdehyde dehydrogenase, NAD binding domain
THERJR_RS07095	SM01130	THERJR_RS07095
THERJR_RS07100	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS07120	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07120	SM00843	THERJR_RS07120
THERJR_RS07170	SM00450	Rhodanese Homology Domain
THERJR_RS07175	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS07180	SM00028	Tetratricopeptide repeats
THERJR_RS07200	SM00060	Fibronectin type 3 domain
THERJR_RS07250	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS07255	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS07270	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07275	SM00852	Probable molybdopterin binding domain
THERJR_RS07285	SM00487	DEAD-like helicases superfamily
THERJR_RS07285	SM00490	helicase superfamily c-terminal domain
THERJR_RS07320	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07415	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS07440	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07455	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07515	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS07525	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
THERJR_RS07525	SM00534	ATPase domain of DNA mismatch repair MUTS family
THERJR_RS07540	SM00853	MutL C terminal dimerisation domain
THERJR_RS07540	SM01340	THERJR_RS07540
THERJR_RS07560	SM00411	bacterial (prokaryotic) histone like domain
THERJR_RS07565	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07575	SM00267	diguanylate cyclase
THERJR_RS07575	SM00448	cheY-homologous receiver domain
THERJR_RS07590	SM00257	Lysin motif
THERJR_RS07595	SM00091	PAS domain
THERJR_RS07610	SM00919	Malic enzyme, NAD binding domain
THERJR_RS07610	SM01274	THERJR_RS07610
THERJR_RS07660	SM00260	Two component signalling adaptor domain
THERJR_RS07665	SM00073	Histidine Phosphotransfer domain
THERJR_RS07665	SM00260	Two component signalling adaptor domain
THERJR_RS07665	SM00387	Histidine kinase-like ATPases
THERJR_RS07665	SM01231	THERJR_RS07665
THERJR_RS07670	SM00448	cheY-homologous receiver domain
THERJR_RS07685	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07685	SM00962	SRP54-type protein, GTPase domain
THERJR_RS07720	SM00448	cheY-homologous receiver domain
THERJR_RS07775	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07815	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07815	SM01086	C-terminal, D2-small domain, of ClpB protein
THERJR_RS07835	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
THERJR_RS07835	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
THERJR_RS07835	SM00493	THERJR_RS07835
THERJR_RS07855	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
THERJR_RS07865	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS07875	SM00257	Lysin motif
THERJR_RS07940	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS07960	SM00646	THERJR_RS07960
THERJR_RS07985	SM01207	THERJR_RS07985
THERJR_RS08030	SM00316	Ribosomal protein S1-like RNA-binding domain
THERJR_RS08035	SM00563	Phosphate acyltransferases
THERJR_RS08065	SM00260	Two component signalling adaptor domain
THERJR_RS08185	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS08195	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS08215	SM00363	S4 RNA-binding domain
THERJR_RS08280	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS08365	SM00387	Histidine kinase-like ATPases
THERJR_RS08375	SM00936	Penicillin-binding protein 5, C-terminal domain 
THERJR_RS08395	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
THERJR_RS08480	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS08490	SM00091	PAS domain
THERJR_RS08490	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS08515	SM00448	cheY-homologous receiver domain
THERJR_RS08520	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS08525	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS08555	SM00363	S4 RNA-binding domain
THERJR_RS08560	SM00861	Transketolase, pyrimidine binding domain
THERJR_RS08655	SM00878	Biotin carboxylase C-terminal domain
THERJR_RS08700	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS08705	SM00052	Putative diguanylate phosphodiesterase
THERJR_RS08705	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THERJR_RS08705	SM00091	PAS domain
THERJR_RS08705	SM00267	diguanylate cyclase
THERJR_RS08715	SM00841	Elongation factor P, C-terminal
THERJR_RS08715	SM01185	THERJR_RS08715
THERJR_RS08785	SM00842	Cell division protein FtsA
THERJR_RS08825	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS08830	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS08885	SM00267	diguanylate cyclase
THERJR_RS08885	SM00448	cheY-homologous receiver domain
THERJR_RS08910	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS08920	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS08995	SM00220	Serine/Threonine protein kinases, catalytic domain
THERJR_RS08995	SM00740	THERJR_RS08995
THERJR_RS09010	SM00331	Sigma factor PP2C-like phosphatases
THERJR_RS09010	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
THERJR_RS09015	SM00240	Forkhead associated domain
THERJR_RS09020	SM00240	Forkhead associated domain
THERJR_RS09025	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS09050	SM00487	DEAD-like helicases superfamily
THERJR_RS09050	SM00490	helicase superfamily c-terminal domain
THERJR_RS09100	SM01409	THERJR_RS09100
THERJR_RS09105	SM00072	Guanylate kinase homologues.
THERJR_RS09170	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS09175	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS09180	SM00838	Elongation factor G C-terminus
THERJR_RS09205	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
THERJR_RS09220	SM00851	MGS-like domain
THERJR_RS09220	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
THERJR_RS09220	SM01209	THERJR_RS09220
THERJR_RS09225	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
THERJR_RS09255	SM00363	S4 RNA-binding domain
THERJR_RS09300	SM00028	Tetratricopeptide repeats
THERJR_RS09310	SM00421	helix_turn_helix, Lux Regulon
THERJR_RS09310	SM00448	cheY-homologous receiver domain
THERJR_RS09340	SM01245	THERJR_RS09340
THERJR_RS09345	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS09370	SM00363	S4 RNA-binding domain
THERJR_RS09385	SM00463	Small MutS-related domain
THERJR_RS09385	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
THERJR_RS09385	SM00534	ATPase domain of DNA mismatch repair MUTS family
THERJR_RS09400	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THERJR_RS09400	SM00481	DNA polymerase alpha chain like domain
THERJR_RS09400	SM00483	DNA polymerase X family
THERJR_RS09410	SM00873	B3/4 domain
THERJR_RS09410	SM00874	tRNA synthetase B5 domain
THERJR_RS09410	SM00896	Ferredoxin-fold anticodon binding domain
THERJR_RS09420	SM00967	RNA 2'-O ribose methyltransferase substrate binding
THERJR_RS09450	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
THERJR_RS09485	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS09520	SM00487	DEAD-like helicases superfamily
THERJR_RS09560	SM01208	THERJR_RS09560
THERJR_RS09570	SM00732	Likely ribonuclease with RNase H fold.
THERJR_RS09590	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
THERJR_RS09640	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS09690	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS09755	SM00028	Tetratricopeptide repeats
THERJR_RS09765	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS09780	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS09790	SM00387	Histidine kinase-like ATPases
THERJR_RS09790	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS09845	SM00479	THERJR_RS09845
THERJR_RS09845	SM00487	DEAD-like helicases superfamily
THERJR_RS09845	SM00488	THERJR_RS09845
THERJR_RS09845	SM00491	THERJR_RS09845
THERJR_RS09860	SM00834	Putative regulatory protein
THERJR_RS09900	SM00100	Cyclic nucleotide-monophosphate binding domain
THERJR_RS09900	SM00419	helix_turn_helix, cAMP Regulatory protein
THERJR_RS09950	SM00478	endonuclease III
THERJR_RS09970	SM00903	Flavin reductase like domain
THERJR_RS10000	SM00763	PrkA AAA domain
THERJR_RS10020	SM00748	Higher Eukarytoes and Prokaryotes Nucleotide-binding domain
THERJR_RS10075	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS10100	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS10180	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS10245	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS10305	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS10305	SM00962	SRP54-type protein, GTPase domain
THERJR_RS10305	SM00963	SRP54-type protein, helical bundle domain
THERJR_RS10335	SM01007	Class II Aldolase and Adducin N-terminal domain
THERJR_RS10340	SM00996	S-adenosyl-L-homocysteine hydrolase
THERJR_RS10340	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
THERJR_RS10355	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS10355	SM00962	SRP54-type protein, GTPase domain
THERJR_RS10355	SM00963	SRP54-type protein, helical bundle domain
THERJR_RS10365	SM00968	SMC proteins Flexible Hinge Domain
THERJR_RS10390	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS10395	SM00358	Double-stranded RNA binding motif
THERJR_RS10395	SM00535	Ribonuclease III family
THERJR_RS10400	SM00825	Beta-ketoacyl synthase
THERJR_RS10415	SM00822	THERJR_RS10415
THERJR_RS10420	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
THERJR_RS10490	SM00984	UDP binding domain
THERJR_RS10515	SM00902	Iron hydrogenase small subunit
THERJR_RS10515	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THERJR_RS10530	SM00028	Tetratricopeptide repeats
THERJR_RS10535	SM00487	DEAD-like helicases superfamily
THERJR_RS10535	SM00490	helicase superfamily c-terminal domain
THERJR_RS10545	SM01120	THERJR_RS10545
THERJR_RS10545	SM01121	THERJR_RS10545
THERJR_RS10595	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS10655	SM00363	S4 RNA-binding domain
THERJR_RS10690	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS10695	SM00091	PAS domain
THERJR_RS10695	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS10695	SM00387	Histidine kinase-like ATPases
THERJR_RS10695	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS10700	SM00448	cheY-homologous receiver domain
THERJR_RS10700	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS10740	SM00257	Lysin motif
THERJR_RS10815	SM00864	Tubulin/FtsZ family, GTPase domain
THERJR_RS10815	SM00865	Tubulin/FtsZ family, C-terminal domain
THERJR_RS10820	SM00842	Cell division protein FtsA
THERJR_RS10885	SM00740	THERJR_RS10885
THERJR_RS10915	SM00481	DNA polymerase alpha chain like domain
THERJR_RS10995	SM00947	Carbonic anhydrase
THERJR_RS11005	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11040	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS11040	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS11055	SM00936	Penicillin-binding protein 5, C-terminal domain 
THERJR_RS11080	SM00646	THERJR_RS11080
THERJR_RS11085	SM00838	Elongation factor G C-terminus
THERJR_RS11085	SM00889	Elongation factor G, domain IV
THERJR_RS11095	SM00450	Rhodanese Homology Domain
THERJR_RS11100	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS11100	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS11110	SM00422	helix_turn_helix, mercury resistance
THERJR_RS11130	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS11195	SM00852	Probable molybdopterin binding domain
THERJR_RS11200	SM00852	Probable molybdopterin binding domain
THERJR_RS11205	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11230	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS11230	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
THERJR_RS11310	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11315	SM00062	Bacterial periplasmic substrate-binding proteins
THERJR_RS11335	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11340	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
THERJR_RS11375	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
THERJR_RS11380	SM00346	helix_turn_helix isocitrate lyase regulation
THERJR_RS11400	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11400	SM00930	THERJR_RS11400
THERJR_RS11410	SM00232	JAB/MPN domain
THERJR_RS11440	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11545	SM00244	prohibitin homologues
THERJR_RS11590	SM00400	zinc finger
THERJR_RS11590	SM00493	THERJR_RS11590
THERJR_RS11600	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS11615	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11655	SM00448	cheY-homologous receiver domain
THERJR_RS11655	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS11660	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS11690	SM00052	Putative diguanylate phosphodiesterase
THERJR_RS11690	SM00267	diguanylate cyclase
THERJR_RS11730	SM00481	DNA polymerase alpha chain like domain
THERJR_RS11735	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS11740	SM00052	Putative diguanylate phosphodiesterase
THERJR_RS11755	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS11780	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS11785	SM00100	Cyclic nucleotide-monophosphate binding domain
THERJR_RS11785	SM00419	helix_turn_helix, cAMP Regulatory protein
THERJR_RS11820	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS11855	SM01208	THERJR_RS11855
THERJR_RS11910	SM00478	endonuclease III
THERJR_RS11965	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS11975	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS11980	SM00448	cheY-homologous receiver domain
THERJR_RS11980	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS12050	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS12075	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS12150	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS12150	SM00924	MgtE intracellular N domain
THERJR_RS12175	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS12180	SM00322	K homology RNA-binding domain
THERJR_RS12220	SM00331	Sigma factor PP2C-like phosphatases
THERJR_RS12220	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
THERJR_RS12225	SM00240	Forkhead associated domain
THERJR_RS12275	SM00240	Forkhead associated domain
THERJR_RS12275	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS12295	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS12310	SM00271	DnaJ molecular chaperone homology domain
THERJR_RS12335	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS12340	SM00838	Elongation factor G C-terminus
THERJR_RS12380	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS12385	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THERJR_RS12400	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS12415	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
THERJR_RS12430	SM00357	Cold shock protein domain
THERJR_RS12485	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS12550	SM00091	PAS domain
THERJR_RS12550	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS12555	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
THERJR_RS12575	SM01078	THERJR_RS12575
THERJR_RS12585	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
THERJR_RS12615	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS12620	SM00360	RNA recognition motif
THERJR_RS12640	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
THERJR_RS12645	SM01103	THERJR_RS12645
THERJR_RS12725	SM00316	Ribosomal protein S1-like RNA-binding domain
THERJR_RS12735	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS12810	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
THERJR_RS12820	SM00881	CoA binding domain
THERJR_RS12835	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS12855	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS12855	SM00464	Found in ATP-dependent protease La (LON)
THERJR_RS12860	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS12865	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS12865	SM00994	ClpX C4-type zinc finger
THERJR_RS12865	SM01086	C-terminal, D2-small domain, of ClpB protein
THERJR_RS12935	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS12950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
THERJR_RS13020	SM00062	Bacterial periplasmic substrate-binding proteins
THERJR_RS13025	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13065	SM00481	DNA polymerase alpha chain like domain
THERJR_RS13110	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS13120	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS13125	SM00487	DEAD-like helicases superfamily
THERJR_RS13125	SM00490	helicase superfamily c-terminal domain
THERJR_RS13145	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13160	SM00342	helix_turn_helix, arabinose operon control protein
THERJR_RS13195	SM01018	B12 binding domain
THERJR_RS13210	SM00345	helix_turn_helix gluconate operon transcriptional repressor
THERJR_RS13210	SM00866	THERJR_RS13210
THERJR_RS13215	SM01018	B12 binding domain
THERJR_RS13235	SM01018	B12 binding domain
THERJR_RS13245	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS13245	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS13260	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13275	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13285	SM00448	cheY-homologous receiver domain
THERJR_RS13285	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS13290	SM00387	Histidine kinase-like ATPases
THERJR_RS13290	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS13295	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS13295	SM00387	Histidine kinase-like ATPases
THERJR_RS13295	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS13300	SM00448	cheY-homologous receiver domain
THERJR_RS13300	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS13320	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13360	SM00387	Histidine kinase-like ATPases
THERJR_RS13375	SM00793	Accessory gene regulator B
THERJR_RS13400	SM00052	Putative diguanylate phosphodiesterase
THERJR_RS13400	SM00091	PAS domain
THERJR_RS13400	SM00267	diguanylate cyclase
THERJR_RS13420	SM00529	Helix-turn-helix diphteria tox regulatory element
THERJR_RS13425	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13430	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13450	SM01133	THERJR_RS13450
THERJR_RS13485	SM00422	helix_turn_helix, mercury resistance
THERJR_RS13510	SM00347	helix_turn_helix multiple antibiotic resistance protein
THERJR_RS13515	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS13515	SM00387	Histidine kinase-like ATPases
THERJR_RS13515	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS13520	SM00448	cheY-homologous receiver domain
THERJR_RS13520	SM00862	Transcriptional regulatory protein, C terminal
THERJR_RS13530	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13560	SM00530	Helix-turn-helix XRE-family like proteins 
THERJR_RS13565	SM00316	Ribosomal protein S1-like RNA-binding domain
THERJR_RS13565	SM00357	Cold shock protein domain
THERJR_RS13565	SM00955	THERJR_RS13565
THERJR_RS13570	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS13600	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13605	SM00345	helix_turn_helix gluconate operon transcriptional repressor
THERJR_RS13615	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13620	SM00345	helix_turn_helix gluconate operon transcriptional repressor
THERJR_RS13635	SM01192	THERJR_RS13635
THERJR_RS13635	SM01193	THERJR_RS13635
THERJR_RS13655	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
THERJR_RS13670	SM00849	Metallo-beta-lactamase superfamily
THERJR_RS13695	SM00481	DNA polymerase alpha chain like domain
THERJR_RS13705	SM00481	DNA polymerase alpha chain like domain
THERJR_RS13745	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS13745	SM01131	THERJR_RS13745
THERJR_RS13750	SM00278	Helix-hairpin-helix DNA-binding motif class 1
THERJR_RS13750	SM00465	GIY-YIG type nucleases (URI domain)
THERJR_RS13760	SM00487	DEAD-like helicases superfamily
THERJR_RS13760	SM00490	helicase superfamily c-terminal domain
THERJR_RS13770	SM00986	Uracil DNA glycosylase superfamily
THERJR_RS13770	SM00987	UreE urease accessory protein, C-terminal domain 
THERJR_RS13780	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS13785	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
THERJR_RS13785	SM00245	tail specific protease
THERJR_RS13800	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS13885	SM00448	cheY-homologous receiver domain
THERJR_RS13885	SM00850	LytTr DNA-binding domain
THERJR_RS13890	SM00793	Accessory gene regulator B
THERJR_RS13895	SM00387	Histidine kinase-like ATPases
THERJR_RS13905	SM00861	Transketolase, pyrimidine binding domain
THERJR_RS13920	SM00937	THERJR_RS13920
THERJR_RS13925	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS13940	SM00957	SecA DEAD-like domain
THERJR_RS13940	SM00958	SecA preprotein cross-linking domain
THERJR_RS13955	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS13970	SM00357	Cold shock protein domain
THERJR_RS13985	SM00858	THERJR_RS13985
THERJR_RS14010	SM00116	Domain in cystathionine beta-synthase and other proteins.
THERJR_RS14100	SM00487	DEAD-like helicases superfamily
THERJR_RS14100	SM00490	helicase superfamily c-terminal domain
THERJR_RS14110	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THERJR_RS14110	SM00267	diguanylate cyclase
THERJR_RS14135	SM00448	cheY-homologous receiver domain
THERJR_RS14140	SM00858	THERJR_RS14140
THERJR_RS14170	SM00421	helix_turn_helix, Lux Regulon
THERJR_RS14170	SM00448	cheY-homologous receiver domain
THERJR_RS14175	SM00387	Histidine kinase-like ATPases
THERJR_RS14355	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS14365	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS14375	SM00635	Bacterial Ig-like domain 2
THERJR_RS14395	SM00060	Fibronectin type 3 domain
THERJR_RS14400	SM00060	Fibronectin type 3 domain
THERJR_RS14420	SM00028	Tetratricopeptide repeats
THERJR_RS14455	SM00966	SpoVT / AbrB like domain 
THERJR_RS14525	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS14590	SM00226	Low molecular weight phosphatase family
THERJR_RS14615	SM00937	THERJR_RS14615
THERJR_RS14630	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS14640	SM00257	Lysin motif
THERJR_RS14655	SM00357	Cold shock protein domain
THERJR_RS14655	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS14655	SM00959	Rho termination factor, N-terminal domain
THERJR_RS14690	SM00448	cheY-homologous receiver domain
THERJR_RS14715	SM00836	DALR anticodon binding domain
THERJR_RS14715	SM01016	Arginyl tRNA synthetase N terminal dom
THERJR_RS14750	SM00344	helix_turn_helix ASNC type
THERJR_RS14805	SM01018	B12 binding domain
THERJR_RS14835	SM01018	B12 binding domain
THERJR_RS14840	SM00342	helix_turn_helix, arabinose operon control protein
THERJR_RS14935	SM00100	Cyclic nucleotide-monophosphate binding domain
THERJR_RS14935	SM00419	helix_turn_helix, cAMP Regulatory protein
THERJR_RS14950	SM00788	Adenylosuccinate synthetase
THERJR_RS14955	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS14960	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS15010	SM00567	E-Z type HEAT repeats
THERJR_RS15055	SM00382	ATPases associated with a variety of cellular activities
THERJR_RS15095	SM01001	AIR carboxylase
THERJR_RS15120	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS15120	SM00876	Biotin and Thiamin Synthesis associated domain
THERJR_RS15125	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS15125	SM00876	Biotin and Thiamin Synthesis associated domain
THERJR_RS15135	SM00470	ParB-like nuclease domain
THERJR_RS15150	SM01228	THERJR_RS15150
THERJR_RS15160	SM00393	Putative single-stranded nucleic acids-binding domain
THERJR_RS15160	SM01245	THERJR_RS15160
THERJR_RS15170	SM01234	THERJR_RS15170
THERJR_RS15190	SM00257	Lysin motif
THERJR_RS15195	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS15195	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS15205	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS15205	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS15215	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS15215	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS15255	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS15260	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS15265	SM00091	PAS domain
THERJR_RS15265	SM00331	Sigma factor PP2C-like phosphatases
THERJR_RS15275	SM00421	helix_turn_helix, Lux Regulon
THERJR_RS15290	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS15295	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS15305	SM00460	Transglutaminase/protease-like homologues
THERJR_RS15315	SM00220	Serine/Threonine protein kinases, catalytic domain
THERJR_RS15350	SM00052	Putative diguanylate phosphodiesterase
THERJR_RS15350	SM00267	diguanylate cyclase
THERJR_RS15355	SM00052	Putative diguanylate phosphodiesterase
THERJR_RS15355	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
THERJR_RS15355	SM00091	PAS domain
THERJR_RS15355	SM00267	diguanylate cyclase
THERJR_RS15360	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
THERJR_RS15360	SM00267	diguanylate cyclase
THERJR_RS15360	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS15360	SM00897	FIST N domain
THERJR_RS15360	SM01204	THERJR_RS15360
THERJR_RS15375	SM00729	Elongator protein 3, MiaB family, Radical SAM
THERJR_RS15395	SM00487	DEAD-like helicases superfamily
THERJR_RS15395	SM00490	helicase superfamily c-terminal domain
THERJR_RS15395	SM00910	THERJR_RS15395
THERJR_RS15405	SM00257	Lysin motif
THERJR_RS15410	SM00318	Staphylococcal nuclease homologues
THERJR_RS15425	SM00257	Lysin motif
THERJR_RS15430	SM00060	Fibronectin type 3 domain
THERJR_RS15440	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS15450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
THERJR_RS15450	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
THERJR_RS15470	SM00257	Lysin motif
THERJR_RS15510	SM00267	diguanylate cyclase
THERJR_RS15515	SM00028	Tetratricopeptide repeats
THERJR_RS15520	SM00220	Serine/Threonine protein kinases, catalytic domain
THERJR_RS15550	SM00091	PAS domain
THERJR_RS15555	SM00267	diguanylate cyclase
THERJR_RS15565	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS15575	SM00257	Lysin motif
THERJR_RS15620	SM00387	Histidine kinase-like ATPases
THERJR_RS15620	SM00388	His Kinase A (phosphoacceptor) domain
THERJR_RS15635	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS15645	SM00287	Bacterial SH3 domain homologues
THERJR_RS15645	SM00646	THERJR_RS15645
THERJR_RS15650	SM00909	Sporulation and spore germination
THERJR_RS15665	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
THERJR_RS15675	SM00267	diguanylate cyclase
THERJR_RS15705	SM00387	Histidine kinase-like ATPases
THERJR_RS15705	SM00388	His Kinase A (phosphoacceptor) domain
